Citrus Sinensis ID: 015956

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
Protein Sequence
MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRFVKLMIITVAYELLKI
Secondary Structure (PSIPRED)
cHHHHHHHHHcccEEccccccccccccccccEEEEEEEcccccccccccccEEcEEccccccccccccccEEcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHcccccccccccccccccccccccccEEEEEEcccccccccccEEEccccEEEEEcccccEEEEEcccccccccccccEEEccEEEEEcccEEEcccccEEEccccccccccccEEEEEEEccEEEEEccccccccccccccccccccEEEEEEEEEEcccHHHHHHccccccccccccccccccccccccEEEEEEEcEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEHHHHHHcccEEEEccccccccccccccEEEEEEEccccccHHHHcHHHHHccccccccccccccccEEEHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHcccccccccccccHHccEEEEccHHHcccccccccEEcccEEEEEEcccccEEEEccccccccccccccEEEccEEEEccccEEEcccccEEEcccccccccccccccEEEEccEEEEEcccccccccccccccccccccccccEEEccccHHHHHHHccccccccEEccccccccccccccccEEcccccEEEEEc
Coil and Loop (DISEMBL)
MTAIATAAALSlpislyrpakintkksvrgGFRVFALFgeegglvdkksawstlfdvedprskvpqckgkfldVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDrllqdrhtsgtdqtcaspstskqsldivkgklprkslnvsgpvqpyntrlknfwfpvafstdlkddtmvpfdcfeepwvifrgkdgipgcvqntcahracplhlgsvnegriqcpyhgweystdgkcekmpstqlrnvkikslpcfeqegmiwiwpgdepptatipcllppsgfeIHAEIVMELPIEHGLLLDNLLdlahapfthtstfakgwsvpRFVKLMIITVAYELLKI
Flexible Loop (DISEMBL)
MTAIATaaalslpislyrpakintkksvrGGFRVFALFgeegglvdkKSAWSTLFDvedprskvpqckgkfldvnQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTsgtdqtcaspstskqsldivkgklprkslnvsgpvqpyntrlknFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFThtstfakgwsvprFVKLMIITVAYELLKI
Low Complexity Region (SEG)
MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGllldnlldlAHAPFTHTSTFAKGWSVPRFVKLMIITVAYELLKI
Disordered region (IsUnstruct)
*****TAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLL**************************************PVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRFVKLMIITVAYELL**
Disordered Region (DISOPRED)
*****TAAALSLPISLYRPAKINTKKSVRGGFRVFAL****************LFDVEDP********GKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEAL************************************************YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRFVKLMIITV*YELLKI
Disordered Region (DISEMBL)
MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDR******************LDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRFVKLMIITVAYELLKI
Disordered Region (DISPRO)
*TAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ*****************************************YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRFVKLMIITVAYELLKI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSxxxxxxxxxxxxxxxxxxxxxxxxxxxxVATALDKLAYMEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRFVKLMIITVAYELLKI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	397	2.2.26 [Sep-21-2011]
Q8S7E1	541	Chlorophyllide a oxygenas	yes	no	0.962	0.706	0.730	1e-162
Q9MBA1	536	Chlorophyllide a oxygenas	no	no	0.984	0.729	0.717	1e-162
Q9ZWM5	645	Chlorophyllide a oxygenas	N/A	no	0.738	0.454	0.387	7e-67
Q9XJ38	463	Chlorophyllide a oxygenas	N/A	no	0.659	0.565	0.391	4e-56
Q9SK50	539	Protein TIC 55, chloropla	no	no	0.380	0.280	0.293	6e-19
O49931	553	Protein TIC 55, chloropla	N/A	no	0.403	0.289	0.289	7e-19
O05616	354	Vanillate O-demethylase o	N/A	no	0.397	0.446	0.323	3e-17
P12609	329	Vanillate O-demethylase o	N/A	no	0.337	0.407	0.309	8e-17
P94679	347	Toluene-4-sulfonate monoo	no	no	0.400	0.458	0.279	6e-15
Q44256	432	3-chlorobenzoate-3,4-diox	no	no	0.413	0.379	0.288	2e-14

>sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica GN=CAO PE=2 SV=1

 Score =  570 bits (1469), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 284/389 (73%), Positives = 327/389 (84%), Gaps = 7/389 (1%)

Query: 4   IATAAALSL-PISLYRPA-KINTKKSV--RGGFRVFALFGEEGGLVDKKSAWSTLFDVED 59
           + T A+LSL P  L +P+ +  ++K V   GG +V+A+ G++G    K +AW  LF V+D
Sbjct: 1   MTTVASLSLLPHLLIKPSFRCCSRKGVGRYGGIKVYAVLGDDGADYAKNNAWEALFHVDD 60

Query: 60  PRSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKS 119
           P  +VP  KGKFLDVNQALEV R+DIQYCDWRARQD+LTIM+LH KVVEVLNPLAR++KS
Sbjct: 61  PGPRVPIAKGKFLDVNQALEVVRFDIQYCDWRARQDLLTIMVLHNKVVEVLNPLAREFKS 120

Query: 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTC 179
           IGT++KELAELQE+LA+AH QVH+SE RV++ALDKLA ME LVNDRLLQD  +S +   C
Sbjct: 121 IGTLRKELAELQEELAKAHNQVHLSETRVSSALDKLAQMETLVNDRLLQDGGSSASTAEC 180

Query: 180 AS--PSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDC 237
            S  PSTS  S  +V  K PR+SLNVSGPVQPYN  LKNFW+PVAFS+DLKDDTMVP DC
Sbjct: 181 TSLAPSTSSAS-RVVNKKPPRRSLNVSGPVQPYNPSLKNFWYPVAFSSDLKDDTMVPIDC 239

Query: 238 FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 297
           FEE WVIFRGKDG PGCV NTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST
Sbjct: 240 FEEQWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST 299

Query: 298 QLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLD 357
           ++ NV+I+SLPCFEQEGM+WIWPG++PP +TIP LLPPSGF IHAEIVMELP+EHGLLLD
Sbjct: 300 KMLNVRIRSLPCFEQEGMVWIWPGNDPPKSTIPSLLPPSGFTIHAEIVMELPVEHGLLLD 359

Query: 358 NLLDLAHAPFTHTSTFAKGWSVPRFVKLM 386
           NLLDLAHAPFTHTSTFAKGWSVP  VK +
Sbjct: 360 NLLDLAHAPFTHTSTFAKGWSVPSLVKFL 388

Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b. Acts specifically on the non-esterified chlorophyllide a and not on chlorophyll a.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 1EC: 2EC: 2

>sp|Q9MBA1|CAO_ARATH Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=1

 Score =  570 bits (1469), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 282/393 (71%), Positives = 327/393 (83%), Gaps = 2/393 (0%)

Query: 3   AIATAAALSLPISLY--RPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           A+ + +ALSLPIS    R + ++ KK V+G FRVFA+FG+E GLV+KKS W  LFDVEDP
Sbjct: 4   AVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDP 63

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSK P  KGKFLDVNQA+EVAR+DIQY DWRARQD+LTIM+LH+KVV+VLNPLAR+YKSI
Sbjct: 64  RSKAPPYKGKFLDVNQAIEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSI 123

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GT+KKELA LQE+L++AH+QVHISEARV+TALDKLA+ME LVNDRLL  R  +  D+  +
Sbjct: 124 GTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEELVNDRLLPGRVVTELDKPSS 183

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           S + S   LD  K     KSLNVSGPV PY+  LKNFW+PVAF+ DLK DTMVP +CFE+
Sbjct: 184 STTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIECFEQ 243

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWVIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQCPYHGWEYSTDG+C+KMPST+L 
Sbjct: 244 PWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLL 303

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
            VKIKSLPC EQEGMIWIWPGDEPP   +P L PPSGF IHAE+VM+LP+EHGLLLDNLL
Sbjct: 304 KVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLL 363

Query: 361 DLAHAPFTHTSTFAKGWSVPRFVKLMIITVAYE 393
           DLAHAPFTHTSTFAKGWSVP  VK +  T   +
Sbjct: 364 DLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQ 396

Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b. Acts specifically on the non-esterified chlorophyllide a and not on chlorophyll a.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 2

>sp|Q9ZWM5|CAO_CHLRE Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii GN=CAO PE=2 SV=2

 Score =  254 bits (649), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 134/346 (38%), Positives = 193/346 (55%), Gaps = 53/346 (15%)

Query: 93  RQDVLTIMLLHE----KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARV 148
           RQD    + + E    KV E L+  AR+  ++G ++ +L  L+  +AQA  ++ ++++RV
Sbjct: 129 RQDAAATLAMIEEANRKVEESLSEEAREKTAVGDLRDQLESLRAQVAQAQERLAMTQSRV 188

Query: 149 ATALDKLAYM--EALVNDRLLQDRHTSGTDQTCASPST---------------------- 184
              L ++  +  EA   +R+ +       ++   + ST                      
Sbjct: 189 EQNLQRVNELKAEATTLERMRKASDLDIKERERIAISTVAAKGPASSSSSAAAVSAPATS 248

Query: 185 -----SKQSLDIVKGKLPRKSLNVSGPVQPYNTR------------------LKNFWFPV 221
                 + +   V  ++P  S        P  ++                  L+NFW+P 
Sbjct: 249 ATLTVERPAATTVTQEVPSTSYGTPVDRAPRRSKAAIRRSRGLESSMEIEEGLRNFWYPA 308

Query: 222 AFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYH 281
            FS  L  DT+VPF+ F EPWV+FR + G P C+++ CAHR CPL LG V EG++ CPYH
Sbjct: 309 EFSARLPKDTLVPFELFGEPWVMFRDEKGQPSCIRDECAHRGCPLSLGKVVEGQVMCPYH 368

Query: 282 GWEYSTDGKCEKMPSTQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL-PPSGFE 339
           GWE++ DG C KMPST   RNV + +LPC E++G IW+WPGD  P  T+P    PP GF 
Sbjct: 369 GWEFNGDGACTKMPSTPFCRNVGVAALPCAEKDGFIWVWPGDGLPAETLPDFAQPPEGFL 428

Query: 340 IHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRFVKL 385
           IHAEI++++P+EHGLL++NLLDLAHAPFTHTSTFA+GW VP FVK 
Sbjct: 429 IHAEIMVDVPVEHGLLIENLLDLAHAPFTHTSTFARGWPVPDFVKF 474

Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b. Acts specifically on the non-esterified chlorophyllide a and not on chlorophyll a.

Chlamydomonas reinhardtii (taxid: 3055)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 2

>sp|Q9XJ38|CAO_DUNSA Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina GN=CAO PE=2 SV=1

 Score =  219 bits (557), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 175/304 (57%), Gaps = 42/304 (13%)

Query: 123 MKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA----LVNDRL------------ 166
           M+ +L  LQ+++++A  ++  SEARVA  L ++  ++A    L   RL            
Sbjct: 1   MQSKLLGLQDEISEARDKLRTSEARVAQNLKRVDELKAEAASLERMRLASSSSTDSTVSI 60

Query: 167 ----------------------LQDR-HTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNV 203
                                 +Q R   SG   T       + S  + +G  P+ S  +
Sbjct: 61  ASRGGAAVAATTSVPDHVEREGIQSRVRGSGMASTSYPSHVPQPSQAVRRGPKPKDSRRL 120

Query: 204 SGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRA 263
              ++     L+NFW+P  F+  L+   MVPFD F  PWV+FR +   P C++++CAHRA
Sbjct: 121 RSSLE-LEDGLRNFWYPTEFAKKLEPGMMVPFDLFGVPWVLFRDEHSAPTCIKDSCAHRA 179

Query: 264 CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL-RNVKIKSLPCFEQEGMIWIWPGD 322
           CPL LG V  G +QCPYHGWE+   G C KMPST++   V + +LPC E++G +W+WPGD
Sbjct: 180 CPLSLGKVINGHVQCPYHGWEFDGSGACTKMPSTRMCHGVGVAALPCVEKDGFVWVWPGD 239

Query: 323 EPPTATIPCLL-PPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPR 381
            PP    P    PP+G+++HAEI++++P+EHGLL++NLLDLAHAPFTHT+TFA+GW +P 
Sbjct: 240 GPPPDLPPDFTAPPAGYDVHAEIMVDVPVEHGLLMENLLDLAHAPFTHTTTFARGWPIPE 299

Query: 382 FVKL 385
            V+ 
Sbjct: 300 AVRF 303

Catalyzes a two-step oxygenase reaction involved in the synthesis of chlorophyll b. Acts specifically on the non-esterified chlorophyllide a and not on chlorophyll a.

Dunaliella salina (taxid: 3046)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 2

EC: 2

>sp|Q9SK50|TIC55_ARATH Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 89/167 (53%), Gaps = 16/167 (9%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           W+P+  + ++ +D  +    ++   V+++  +G   C ++ C HR   L  G + +GR++
Sbjct: 88  WYPLYLTKNVPEDAPLGLTVYDRQIVLYKDGEGTLRCYEDRCPHRLAKLSEGQLIDGRLE 147

Query: 278 CPYHGWEYSTDGKCEKMP----STQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 332
           C YHGW++  +GKC K+P    S ++ +   +K+    + +G++W+W   + P    P  
Sbjct: 148 CLYHGWQFEGEGKCVKIPQLPASAKIPKAACVKTYEVKDSQGVVWVWMSTKTPPN--PEK 205

Query: 333 LP-------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTST 372
           LP       P  F+I      ELP +H +LL+NL+D AH P +H  T
Sbjct: 206 LPWFENFARPGFFDI--STTHELPYDHSILLENLMDPAHVPISHDRT 250

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62.

Arabidopsis thaliana (taxid: 3702)

>sp|O49931|TIC55_PEA Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 13/173 (7%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           W+P+  + ++  D  +    +++  V+FR  +    C ++ C HR   L  G + +GR++
Sbjct: 103 WYPLYLTKNVPHDAPLGLKVYDKNIVLFRDGNDQFQCYEDRCPHRLAKLSEGQLIDGRLE 162

Query: 278 CPYHGWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPP--TATIP 330
           C YHGW++  +GKC K+P         ++  +K+    + +G++W+W   + P   + IP
Sbjct: 163 CLYHGWQFEGEGKCVKIPQLPADAKIPKSACVKTYEVRDSQGVLWVWMSRKTPPNVSKIP 222

Query: 331 CL--LPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPR 381
                   GF+       ELP +H +LL+NL+D AH P +H  T    WS  R
Sbjct: 223 WFENFARPGFQ-DISTTHELPYDHSILLENLMDPAHVPISHDRT---DWSAKR 271

Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62.

Pisum sativum (taxid: 3888)

>sp|O05616|VANA_PSEUH Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp. (strain HR199 / DSM 7063) GN=vanA PE=3 SV=1

 Score = 89.7 bits (221), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG 274
           KN W+ VA + D   D  +      E  V +RG +G    V++ C HR  PL LG V +G
Sbjct: 4   KNAWY-VACTPDEIADKPLGRQICNEKIVFYRGPEGRVAAVEDFCPHRGAPLSLGFVRDG 62

Query: 275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVK-IKSLPCFEQEGMIWIWPGDEPPTATIPCLL 333
           ++ C YHG E   +GK   MP  +++    IKS    E+ G IW+WPGD       P L+
Sbjct: 63  KLICGYHGLEMGCEGKTLAMPGQRVQGFPCIKSYAVEERYGFIWVWPGDR--ELADPALI 120

Query: 334 PPSGFEIHAEI-----VMELPIEHGLLLDNLLDLAHAPFTHTSTFAK 375
               +  + E      +  +  ++ L++DNL+DL H  + H S+  +
Sbjct: 121 HHLEWADNPEWAYGGGLYHIACDYRLMIDNLMDLTHETYVHASSIGQ 167

Pseudomonas sp. (strain HR199 / DSM 7063) (taxid: 86003)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 8

EC: 2

>sp|P12609|VANA_PSES9 Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp. (strain ATCC 19151) GN=vanA PE=3 SV=1

 Score = 88.6 bits (218), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 8/142 (5%)

Query: 240 EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL 299
           E  VI+RG       +++ C HR  PL LGS+ +G++ C YHG     DG+   MP+ ++
Sbjct: 5   ERMVIYRGAGQRVAALEDFCPHRGAPLSLGSIQDGKLVCGYHGLVMDCDGRTASMPAQRV 64

Query: 300 RNVK-IKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFE-----IHAEIVMELPIEHG 353
           +    I++ P  E+ G IW+WPGD       P L+P   +       +   +  +  ++ 
Sbjct: 65  QAFPCIRAFPAQERHGFIWVWPGDA--ALADPALIPHLEWAENPAWAYGGGLYHIACDYR 122

Query: 354 LLLDNLLDLAHAPFTHTSTFAK 375
           L++DNL+DL H  + H S+  +
Sbjct: 123 LMIDNLMDLTHETYVHASSIGQ 144

Pseudomonas sp. (strain ATCC 19151) (taxid: 315)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 8

EC: 2

>sp|P94679|TSAM1_COMTE Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1 OS=Comamonas testosteroni GN=tsaM1 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
           ++N W+  A+ T++  + +       EP +++R   G    ++N C HR+ PLH+G    
Sbjct: 3   IRNCWYVAAWDTEIPAEGLFHRTLLNEPVLLYRDTQGRVVALENRCCHRSAPLHIGRQEG 62

Query: 274 GRIQCPYHGWEYSTDGKCEKMPSTQLRNVK--IKSLPCFEQEGMIWIWPGDEPPTATIPC 331
             ++C YHG +++  G C ++P  +    K  IKS P  E+  ++WIW GD  P    P 
Sbjct: 63  DCVRCLYHGLKFNPSGACVEIPGQEQIPPKTCIKSYPVVERNRLVWIWMGD--PARANPD 120

Query: 332 LLPPSGFEIHAEIVME-----LPIEHGLLLDNLLDLAHAPFTHTSTFA 374
            +    +    E  M+         + L++DNLLD  H  + H +T  
Sbjct: 121 DIVDYFWHDSPEWRMKPGYIHYQANYKLIVDNLLDFTHLAWVHPTTLG 168

Involved in the toluene-4-sulfonate degradation pathway. Does not discriminate between the sulfonate and the carboxyl substituents and can also be involved in the p-toluenecarboxylate degradation pathway. Can use toluene-4-sulfonate, p-toluate, m-toluate and 4-ethylbenzoate as substrates, but not p-xylene, toluene and p-cresol. Catalyzes also the demethylation of 4-methoxybenzoate to 4-hydroxybenzoate.

Comamonas testosteroni (taxid: 285)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 4

EC: .

EC: -

>sp|Q44256|CBAA_COMTE 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit OS=Comamonas testosteroni GN=cbaA PE=3 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 13/177 (7%)

Query: 205 GPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRA 263
           G   P    ++ +W P   ST+L+   + V      E  V FR   G  G + + C HR 
Sbjct: 14  GRGTPMGGLMREYWIPALKSTELEAGGSPVRLLLLGEKLVAFREPSGAVGVMDSRCPHRG 73

Query: 264 CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST----QLRN-VKIKSLPCFEQEGMIWI 318
             L +G V EG ++C YHGW++S +GKC  MPS     + +N V++   P  E  G++W+
Sbjct: 74  VSLFMGRVEEGGLRCVYHGWKFSAEGKCVDMPSVRPEDEFKNSVRVARYPVKEMAGVVWV 133

Query: 319 WPGDEPPTATIPCL----LPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTS 371
           + G       +P L    LP +  ++   I ++        L+  +D +H  F H  
Sbjct: 134 YMGTRKVLPELPRLEVLNLPENEVDV---ICLQRKSNWLQNLEGEIDTSHFNFLHVG 187

Comamonas testosteroni (taxid: 285)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
255545394	535	chlorophyll synthase, putative [Ricinus	0.972	0.721	0.826	0.0
449465447	534	PREDICTED: chlorophyllide a oxygenase, c	0.969	0.720	0.790	0.0
359492578	537	PREDICTED: chlorophyllide a oxygenase, c	0.972	0.718	0.817	0.0
224082298	531	predicted protein [Populus trichocarpa]	0.972	0.726	0.818	1e-180
338173749	536	chlorophyllide a oxygenase [Camellia sin	0.969	0.718	0.817	1e-180
356509409	530	PREDICTED: chlorophyllide a oxygenase, c	0.964	0.722	0.813	1e-178
356515896	530	PREDICTED: chlorophyllide a oxygenase, c	0.964	0.722	0.803	1e-175
356552681	534	PREDICTED: chlorophyllide a oxygenase, c	0.959	0.713	0.803	1e-172
356549331	532	PREDICTED: chlorophyllide a oxygenase, c	0.959	0.716	0.795	1e-171
312282087	534	unnamed protein product [Thellungiella h	0.962	0.715	0.756	1e-166

>gi|255545394|ref|XP_002513757.1| chlorophyll synthase, putative [Ricinus communis] gi|223546843|gb|EEF48340.1| chlorophyll synthase, putative [Ricinus communis]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/386 (82%), Positives = 350/386 (90%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           M  +ATAAALSLPISL R +K N+KK VRGGF VFA+FGEEGG++DKKS WSTLFDVEDP
Sbjct: 1   MNTVATAAALSLPISLCRSSKHNSKKGVRGGFGVFAVFGEEGGVLDKKSVWSTLFDVEDP 60

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSK+PQ KGKFLDVNQALEVAR+DIQYCDWRARQDVLTIMLLHEKVV+VLNPLARDYKSI
Sbjct: 61  RSKMPQLKGKFLDVNQALEVARFDIQYCDWRARQDVLTIMLLHEKVVDVLNPLARDYKSI 120

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GT+KKELA LQE LAQAH+QVH+SEARV+TALDKLAYMEALVNDRLL DR T+ T  T  
Sbjct: 121 GTVKKELAGLQEALAQAHQQVHLSEARVSTALDKLAYMEALVNDRLLPDRSTTETSHTSP 180

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           S ST+ QSLD V+ + PRKSLNVSGPVQPY++ LKNFW+PVAFSTDLKDDTM+P DCFEE
Sbjct: 181 STSTAPQSLDTVQRRSPRKSLNVSGPVQPYHSHLKNFWYPVAFSTDLKDDTMIPIDCFEE 240

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWVIFRGKDG PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY+TDGKCEKMPST+L 
Sbjct: 241 PWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYTTDGKCEKMPSTRLL 300

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
           NVKIKSLPCFEQEGMIW+WPG +PP AT+P L PP+GF +HAEIVMELP+EHGLLLDNLL
Sbjct: 301 NVKIKSLPCFEQEGMIWVWPGSDPPAATLPSLQPPAGFHVHAEIVMELPVEHGLLLDNLL 360

Query: 361 DLAHAPFTHTSTFAKGWSVPRFVKLM 386
           DLAHAPFTHTSTFAKGW+VP  V  +
Sbjct: 361 DLAHAPFTHTSTFAKGWTVPSLVTFL 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465447|ref|XP_004150439.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Cucumis sativus] gi|449513335|ref|XP_004164299.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Cucumis sativus]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/386 (79%), Positives = 346/386 (89%), Gaps = 1/386 (0%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           MT +ATAAALSLPIS  +  ++N KKSV+GGFRVFA+FGEEG  +++KS W TLFDVEDP
Sbjct: 1   MTVVATAAALSLPISFSKSPRLNFKKSVKGGFRVFAVFGEEGA-IERKSGWETLFDVEDP 59

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           R+KVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVL IMLLHEKVVEVLNPLARDYKSI
Sbjct: 60  RTKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLAIMLLHEKVVEVLNPLARDYKSI 119

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GTMKKELA LQ++LA+AHRQVHISEARVATALDKLAYME LV+DRLLQDR+T+  D    
Sbjct: 120 GTMKKELAGLQDELAEAHRQVHISEARVATALDKLAYMEELVHDRLLQDRNTAELDSPST 179

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
            P TS Q LD +    P+KSLNVSGPV+PY+ RLKNFW+PVAFS+DLK+D M+PFDCFEE
Sbjct: 180 LPGTSTQPLDSINRSSPKKSLNVSGPVEPYHPRLKNFWYPVAFSSDLKNDIMIPFDCFEE 239

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWV+FRGKDG PGC++NTCAHRACPLHLGSVN+GR+QCPYHGWEYSTDGKCEKMPST+L 
Sbjct: 240 PWVLFRGKDGNPGCIRNTCAHRACPLHLGSVNDGRVQCPYHGWEYSTDGKCEKMPSTRLL 299

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
           NVKIKSLPCFE+EGMIW+WPG++PP A +P L PP GF+IHAE+V+E+P+EHGLLLDNLL
Sbjct: 300 NVKIKSLPCFEKEGMIWVWPGNDPPAANLPSLKPPPGFQIHAELVIEIPVEHGLLLDNLL 359

Query: 361 DLAHAPFTHTSTFAKGWSVPRFVKLM 386
           DLAHAPFTHTSTFAKGWSVP  VK +
Sbjct: 360 DLAHAPFTHTSTFAKGWSVPSLVKFL 385

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492578|ref|XP_002284499.2| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Vitis vinifera] gi|302141810|emb|CBI19013.3| unnamed protein product [Vitis vinifera]

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/388 (81%), Positives = 349/388 (89%), Gaps = 2/388 (0%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           MT +ATAAALSLP+SL   +KINTKK  R G RVFA+FG+E G V++KS W T+FDVEDP
Sbjct: 1   MTIVATAAALSLPLSLCPTSKINTKKGERRGLRVFAVFGDESGSVERKSTWGTIFDVEDP 60

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSK PQ KGKFLDVNQALEVAR+DIQYCDWRARQD+LTIMLLHEKVVEVLNPLAR+YKSI
Sbjct: 61  RSKFPQSKGKFLDVNQALEVARFDIQYCDWRARQDLLTIMLLHEKVVEVLNPLAREYKSI 120

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GT+KK+LA LQE+LAQAHRQVHISEARV TALDKLAYME LVNDRLLQDR+T+ ++QT  
Sbjct: 121 GTLKKDLAGLQEELAQAHRQVHISEARVGTALDKLAYMEELVNDRLLQDRNTADSNQTST 180

Query: 181 SPSTSKQ--SLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCF 238
           S S S    SLD+VK KLP+KSLNVSGPVQPY+ RLKNFW+PVAFSTDLKDDTM+P DCF
Sbjct: 181 STSPSTSTASLDMVKRKLPQKSLNVSGPVQPYHPRLKNFWYPVAFSTDLKDDTMIPIDCF 240

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 298
           EEPWV+FRG+DG PGCV+NTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPST+
Sbjct: 241 EEPWVVFRGQDGKPGCVRNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTR 300

Query: 299 LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDN 358
           L NVKIKSLPC EQEGMIWIWPG +PPTAT+P L PP GF+IHAEIVMELP+EHGLLLDN
Sbjct: 301 LLNVKIKSLPCLEQEGMIWIWPGSDPPTATLPSLQPPPGFKIHAEIVMELPVEHGLLLDN 360

Query: 359 LLDLAHAPFTHTSTFAKGWSVPRFVKLM 386
           LLDLAHAPFTHTSTFAKGWSVP  VK +
Sbjct: 361 LLDLAHAPFTHTSTFAKGWSVPSLVKFL 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082298|ref|XP_002306638.1| predicted protein [Populus trichocarpa] gi|222856087|gb|EEE93634.1| predicted protein [Populus trichocarpa]

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 316/386 (81%), Positives = 347/386 (89%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           MTA ATAAALS+PISL R +K+N KK VRGGFRVFA+ GEEGGL+DKKS W  LFDVEDP
Sbjct: 1   MTAFATAAALSVPISLCRSSKLNCKKGVRGGFRVFAVLGEEGGLLDKKSTWGPLFDVEDP 60

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSK+PQ KGKFLD  QALEVARYDIQYCDWRARQD+LTIM+LHEKVVEVLNPLARDYKSI
Sbjct: 61  RSKMPQFKGKFLDAYQALEVARYDIQYCDWRARQDLLTIMILHEKVVEVLNPLARDYKSI 120

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GTMKKELAELQ++L+QAHRQVHISEARV+TALDKLAYME LVNDRLLQDR+ + +DQ   
Sbjct: 121 GTMKKELAELQDELSQAHRQVHISEARVSTALDKLAYMEELVNDRLLQDRNPAESDQASP 180

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           SPSTS QSLD VK K PRK+L VSGPVQPY+  LKNFW+PVAFSTDLKD TM+P DCFEE
Sbjct: 181 SPSTSTQSLDTVKNKSPRKNLKVSGPVQPYHPHLKNFWYPVAFSTDLKDGTMIPIDCFEE 240

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWV+FRG DG PGCV+NTCAHRACPLHLGSVNEGR++CPYHGWEYSTDGKCEKMPST+L 
Sbjct: 241 PWVLFRGMDGKPGCVRNTCAHRACPLHLGSVNEGRVRCPYHGWEYSTDGKCEKMPSTRLL 300

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
           NVKIKSLPCFEQEGMI +WPG +PP AT+P L PP GF++HAEIVMELP+EHGLLLDNLL
Sbjct: 301 NVKIKSLPCFEQEGMILVWPGSDPPAATLPSLQPPPGFQVHAEIVMELPVEHGLLLDNLL 360

Query: 361 DLAHAPFTHTSTFAKGWSVPRFVKLM 386
           DLAHAPFTHTSTFAKGWSVP  VK +
Sbjct: 361 DLAHAPFTHTSTFAKGWSVPSLVKFL 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338173749|gb|AEI83421.1| chlorophyllide a oxygenase [Camellia sinensis]

 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 317/388 (81%), Positives = 349/388 (89%), Gaps = 3/388 (0%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           M+AIAT A +SLPISL R +K + K+ VR GF VFA+FGEEGGL DKKSAWSTLFDVEDP
Sbjct: 1   MSAIATVATISLPISLSRSSKFSNKRGVRAGFGVFAVFGEEGGLEDKKSAWSTLFDVEDP 60

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSKVPQCKGKFLDVNQALE+ R+DIQYCDWRARQD+LTIMLLHEKVVEVLNPLARDYKSI
Sbjct: 61  RSKVPQCKGKFLDVNQALELVRFDIQYCDWRARQDLLTIMLLHEKVVEVLNPLARDYKSI 120

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTC- 179
           GT+KK+LAELQ++LAQAH+QVHISEARV+TALDKLAYME LV+DRLLQD+ T+ T+  C 
Sbjct: 121 GTLKKDLAELQDELAQAHKQVHISEARVSTALDKLAYMEELVHDRLLQDKPTT-TESECM 179

Query: 180 -ASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCF 238
             S STS +SLD V+ KL RK LNVSGPVQPY+ RLKNFW+PVAFSTDLKDDTMVP DCF
Sbjct: 180 SPSSSTSTESLDTVRNKLSRKILNVSGPVQPYHPRLKNFWYPVAFSTDLKDDTMVPIDCF 239

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 298
           EEPWVIFRGKDG PGCVQNTCAHRACPLHLG +NEGRIQCPYHGWEYSTDGKC+KMPST+
Sbjct: 240 EEPWVIFRGKDGKPGCVQNTCAHRACPLHLGPINEGRIQCPYHGWEYSTDGKCKKMPSTR 299

Query: 299 LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDN 358
           L N KIK+LPCFEQEGMIWIWPG++ PTATIP L PP GF+IHAEIVMELP+EHGLLLDN
Sbjct: 300 LVNAKIKALPCFEQEGMIWIWPGNDAPTATIPSLQPPPGFKIHAEIVMELPVEHGLLLDN 359

Query: 359 LLDLAHAPFTHTSTFAKGWSVPRFVKLM 386
           LLDLAHAPFTHTSTFAKGWSVP   K +
Sbjct: 360 LLDLAHAPFTHTSTFAKGWSVPSLAKFL 387

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509409|ref|XP_003523442.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max]

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 314/386 (81%), Positives = 350/386 (90%), Gaps = 3/386 (0%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           M AIATAA LSLP S  + +K++TKK ++G FRVFA++GEE   +DKK+AWS LFDVEDP
Sbjct: 1   MNAIATAAVLSLPFSFSKSSKLDTKKGLKGRFRVFAVYGEE---IDKKNAWSALFDVEDP 57

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSKVPQ KGKFLDV QALEVARYDIQYCDWRARQD+LTIMLLHEKVVEVLNPLARDYKSI
Sbjct: 58  RSKVPQYKGKFLDVYQALEVARYDIQYCDWRARQDLLTIMLLHEKVVEVLNPLARDYKSI 117

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GTMKKELAELQE+LAQAH+QVHISEARV++ALDKLAYME LVND+LLQ+R T+   QT +
Sbjct: 118 GTMKKELAELQEELAQAHQQVHISEARVSSALDKLAYMEELVNDKLLQERSTTEVSQTSS 177

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           SPSTS + +DI K + PRKSL++SGPVQ Y+  LKNFW+PVAFSTDLKDDTM+P +CFEE
Sbjct: 178 SPSTSFKPVDIEKRRSPRKSLDISGPVQSYHPHLKNFWYPVAFSTDLKDDTMIPIECFEE 237

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWVIFRGKDG PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY+TDGKCEKMPST+L 
Sbjct: 238 PWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYTTDGKCEKMPSTRLL 297

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
           NVKIKSLPCFE EGMIW+WPG++PPTAT+P LLPPSGFE+HAEIVMELPIEHGLLLDNLL
Sbjct: 298 NVKIKSLPCFETEGMIWVWPGNDPPTATLPSLLPPSGFEVHAEIVMELPIEHGLLLDNLL 357

Query: 361 DLAHAPFTHTSTFAKGWSVPRFVKLM 386
           DLAHAPFTHTSTFAKGWSVP  VK +
Sbjct: 358 DLAHAPFTHTSTFAKGWSVPSLVKFL 383

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515896|ref|XP_003526633.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 310/386 (80%), Positives = 346/386 (89%), Gaps = 3/386 (0%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           M AIATAA LSLP S  + +K++TKK ++G FRVFA++GEE   +DKKS WS LFDVEDP
Sbjct: 1   MNAIATAALLSLPFSFSKSSKLDTKKGLKGRFRVFAVYGEE---IDKKSTWSALFDVEDP 57

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSKVPQ KGKFLDV QALE ARYDIQYCDWRARQD+L IMLLHEKVVEVLNPLARDYKSI
Sbjct: 58  RSKVPQYKGKFLDVYQALEFARYDIQYCDWRARQDLLAIMLLHEKVVEVLNPLARDYKSI 117

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GTMKKELA LQE+LA AH+QVHISEARV+TALDKLAYME LVND+LLQ+R T+   QT +
Sbjct: 118 GTMKKELAGLQEELALAHQQVHISEARVSTALDKLAYMEELVNDKLLQERTTTEVSQTSS 177

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           SPSTS + +D+ K + PRKSL++SGPVQ Y+T LKNFW+PVAFSTDLKDDTM+P +CFEE
Sbjct: 178 SPSTSFKPVDVEKRRPPRKSLDISGPVQSYHTHLKNFWYPVAFSTDLKDDTMIPIECFEE 237

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWVIFRGKDG PGCVQNTCAHRACPLHLGSV EGRIQCPYHGWEY+TDGKCEKMPST+L 
Sbjct: 238 PWVIFRGKDGKPGCVQNTCAHRACPLHLGSVKEGRIQCPYHGWEYTTDGKCEKMPSTRLL 297

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
           NVKIKSLPCFE+EGMIW+WPG++PPTAT+P LLPPSGFE+HAEIVMELPIEHGLLLDNLL
Sbjct: 298 NVKIKSLPCFEKEGMIWVWPGNDPPTATLPSLLPPSGFEVHAEIVMELPIEHGLLLDNLL 357

Query: 361 DLAHAPFTHTSTFAKGWSVPRFVKLM 386
           DLAHAPFTHTSTFAKGWSVP  VK +
Sbjct: 358 DLAHAPFTHTSTFAKGWSVPSLVKFL 383

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552681|ref|XP_003544691.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max]

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 310/386 (80%), Positives = 341/386 (88%), Gaps = 5/386 (1%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           M AIATA+AL+LPI L R  K++TK+ ++G FRVFA+FGEE    +KK+AW+ LFDVEDP
Sbjct: 1   MNAIATASALTLPIFL-RAGKLDTKRDLKGRFRVFAVFGEE----EKKNAWAALFDVEDP 55

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSK PQ KGK LD+ QALEVAR+DIQY DWRARQDVLTIM LHEKVVEVLNPLAR+YKSI
Sbjct: 56  RSKFPQNKGKVLDIYQALEVARHDIQYLDWRARQDVLTIMHLHEKVVEVLNPLAREYKSI 115

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GT+KKELA LQ++LAQAHRQVHISEARV TALDKLAYME LVNDRLLQDR T+   QT +
Sbjct: 116 GTLKKELAGLQDELAQAHRQVHISEARVTTALDKLAYMEELVNDRLLQDRSTAEVAQTSS 175

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           SPSTS  SL I K + PRKSLNVSGPVQ Y+  LKNFW+PVAFS DLKDDTM+P +CFEE
Sbjct: 176 SPSTSANSLVIEKRRQPRKSLNVSGPVQSYHPHLKNFWYPVAFSNDLKDDTMIPIECFEE 235

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWVIFRGKDG PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY+TDGKCEKMPSTQ  
Sbjct: 236 PWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYTTDGKCEKMPSTQQL 295

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
           NVKIKS+PCFE+EGMIWIWPG++PPTAT+P LLPPSGFEIHAEIVMELPIEHGLLLDNLL
Sbjct: 296 NVKIKSVPCFEREGMIWIWPGNDPPTATLPSLLPPSGFEIHAEIVMELPIEHGLLLDNLL 355

Query: 361 DLAHAPFTHTSTFAKGWSVPRFVKLM 386
           DLAHAPFTHTSTFAKGWSVP  V  +
Sbjct: 356 DLAHAPFTHTSTFAKGWSVPSLVNFL 381

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549331|ref|XP_003543047.1| PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Glycine max]

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 307/386 (79%), Positives = 339/386 (87%), Gaps = 5/386 (1%)

Query: 1   MTAIATAAALSLPISLYRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           M AIATA+ALSLPI L R  K++TK+ ++G FRVFA+FGEE    +KK+AW  LFDVEDP
Sbjct: 1   MNAIATASALSLPIFL-RAGKLDTKRDLKGRFRVFAVFGEE----EKKNAWGALFDVEDP 55

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSK PQ KGK LD++QALEVAR+DIQY DWRARQDVLTIM LHEKVVEVLNPLAR+YKSI
Sbjct: 56  RSKFPQNKGKVLDISQALEVARHDIQYLDWRARQDVLTIMHLHEKVVEVLNPLAREYKSI 115

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GT+KKELAELQ++LAQAH QVHISEARV TALDKLAYME LVNDRLLQDR T+   QT +
Sbjct: 116 GTLKKELAELQDELAQAHTQVHISEARVTTALDKLAYMEELVNDRLLQDRSTTDVAQTSS 175

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           SPSTS  SL   K + PRKSLNVSGPVQ Y+  LKNFW+PVAFS DLKDDTM+P +CFEE
Sbjct: 176 SPSTSANSLVTEKRRQPRKSLNVSGPVQSYHPHLKNFWYPVAFSNDLKDDTMIPIECFEE 235

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWVIFRGKDG PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY+TDGKCEKMPST+  
Sbjct: 236 PWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYTTDGKCEKMPSTRQL 295

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
           NVKIKS+PCFE+EGMIWIWPG++PP AT+P +LPPSGFEIHAEIVMELPIEHGLLLDNLL
Sbjct: 296 NVKIKSVPCFEKEGMIWIWPGNDPPAATLPSILPPSGFEIHAEIVMELPIEHGLLLDNLL 355

Query: 361 DLAHAPFTHTSTFAKGWSVPRFVKLM 386
           DLAHAPFTHTSTFAKGWSVP  V  +
Sbjct: 356 DLAHAPFTHTSTFAKGWSVPSLVNFL 381

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282087|dbj|BAJ33909.1| unnamed protein product [Thellungiella halophila]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 292/386 (75%), Positives = 334/386 (86%), Gaps = 4/386 (1%)

Query: 3   AIATAAALSLPISL--YRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           A+ T++ALSLPIS    R +K++ KK V+G FRVFA+FGEEGGLV+KKS W  LFDVEDP
Sbjct: 4   AVFTSSALSLPISFCKTRSSKLSRKKGVKGEFRVFAVFGEEGGLVEKKSQWGPLFDVEDP 63

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSK P  KGKFLDVNQALEVAR+DIQY DWRARQD+LTIMLLHEKVV+VLNPLAR+YKSI
Sbjct: 64  RSKTPPFKGKFLDVNQALEVARFDIQYLDWRARQDLLTIMLLHEKVVDVLNPLAREYKSI 123

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GT+KKELAELQE+L +AH+QVHISEARV+TALDKLA+ME LVNDRLL  R  + TD+   
Sbjct: 124 GTVKKELAELQEELGKAHQQVHISEARVSTALDKLAHMEKLVNDRLLPVRVATETDK--P 181

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           S STS Q LD  K  +  K+LNVSGPVQPY+ +LKNFW+PVAF+ DLK DTMVP DCFE+
Sbjct: 182 STSTSVQDLDKEKTNVGAKTLNVSGPVQPYSQQLKNFWYPVAFTADLKHDTMVPIDCFEQ 241

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWVIFRG+DG PGCV+NTCAHRACPL LG+V EGRIQCPYHGWEYSTDGKC KMPST+L 
Sbjct: 242 PWVIFRGEDGKPGCVRNTCAHRACPLDLGTVKEGRIQCPYHGWEYSTDGKCTKMPSTKLL 301

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
           NVKIKS+PC EQ+GMIW+WPGD+PP+ T+P L PPSGF IHAE+VM+LP+EHGLLLDNLL
Sbjct: 302 NVKIKSIPCLEQDGMIWVWPGDDPPSPTLPSLQPPSGFVIHAELVMDLPVEHGLLLDNLL 361

Query: 361 DLAHAPFTHTSTFAKGWSVPRFVKLM 386
           DLAHAPFTHTSTFAKGWSVP  VK +
Sbjct: 362 DLAHAPFTHTSTFAKGWSVPSLVKFL 387

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
TAIR|locus:2823671	536	CH1 "CHLORINA 1" [Arabidopsis	0.974	0.722	0.701	1.4e-149
TAIR|locus:2047329	539	TIC55-II "translocon at the in	0.382	0.282	0.265	1.5e-14
UNIPROTKB|Q4KB09	352	vanA "Vanillate O-demethylase,	0.272	0.306	0.345	5.8e-12
UNIPROTKB|Q48IV9	354	vanA "Vanillate monooxygenase,	0.269	0.302	0.330	8.5e-11
UNIPROTKB|Q4KAM4	363	prnD "Aminopyrrolnitrin oxidas	0.297	0.325	0.296	7.9e-09
UNIPROTKB|D5IGG0	378	carAa "Carbazole 1,9a-dioxygen	0.322	0.338	0.304	1.9e-08
TAIR|locus:2082122	537	ACD1 "ACCELERATED CELL DEATH 1	0.269	0.199	0.311	3.7e-08
FB|FBgn0259697	429	nvd "neverland" [Drosophila me	0.302	0.279	0.338	1.2e-07
UNIPROTKB|F1NKZ9	409	LOC427775 "Uncharacterized pro	0.309	0.300	0.305	3e-07
ZFIN|ZDB-GENE-040718-356	460	zgc:92275 "zgc:92275" [Danio r	0.261	0.226	0.305	8e-07

TAIR|locus:2823671 CH1 "CHLORINA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1460 (519.0 bits), Expect = 1.4e-149, P = 1.4e-149
 Identities = 273/389 (70%), Positives = 317/389 (81%)

Query:     3 AIATAAALSLPISLY--RPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
             A+ + +ALSLPIS    R + ++ KK V+G FRVFA+FG+E GLV+KKS W  LFDVEDP
Sbjct:     4 AVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDP 63

Query:    61 RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
             RSK P  KGKFLDVNQA+EVAR+DIQY DWRARQD+LTIM+LH+KVV+VLNPLAR+YKSI
Sbjct:    64 RSKAPPYKGKFLDVNQAIEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSI 123

Query:   121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
             GT+KKELA LQE+L++AH+QVHISEARV+TALDKLA+ME LVNDRLL  R  +  D+  +
Sbjct:   124 GTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEELVNDRLLPGRVVTELDKPSS 183

Query:   181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
             S + S   LD  K     KSLNVSGPV PY+  LKNFW+PVAF+ DLK DTMVP +CFE+
Sbjct:   184 STTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIECFEQ 243

Query:   241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
             PWVIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQCPYHGWEYSTDG+C+KMPST+L 
Sbjct:   244 PWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLL 303

Query:   301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGXXXXXXX 360
              VKIKSLPC EQEGMIWIWPGDEPP   +P L PPSGF IHAE+VM+LP+EHG       
Sbjct:   304 KVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLL 363

Query:   361 XXAHAPFTHTSTFAKGWSVPRFVKLMIIT 389
               AHAPFTHTSTFAKGWSVP  VK +  T
Sbjct:   364 DLAHAPFTHTSTFAKGWSVPSLVKFLTPT 392

GO:0005506 "iron ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0010277 "chlorophyllide a oxygenase [overall

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;IMP

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2047329 TIC55-II "translocon at the inner envelope membrane of chloroplasts 55-II" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 44/166 (26%), Positives = 78/166 (46%)

Query:   218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
             W+P+  + ++ +D  +    ++   V+++  +G   C ++ C HR   L  G + +GR++
Sbjct:    88 WYPLYLTKNVPEDAPLGLTVYDRQIVLYKDGEGTLRCYEDRCPHRLAKLSEGQLIDGRLE 147

Query:   278 CPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCF------EQEGMIWIWPGDE-PPTAT-I 329
             C YHGW++  +GKC K+P     + KI    C       + +G++W+W   + PP    +
Sbjct:   148 CLYHGWQFEGEGKCVKIPQLPA-SAKIPKAACVKTYEVKDSQGVVWVWMSTKTPPNPEKL 206

Query:   330 PCL---LPPSGFEIHAEIVMELPIEHGXXXXXXXXXAHAPFTHTST 372
             P       P  F+I      ELP +H          AH P +H  T
Sbjct:   207 PWFENFARPGFFDIST--THELPYDHSILLENLMDPAHVPISHDRT 250

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010277 "chlorophyllide a oxygenase [overall

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0045036 "protein targeting to chloroplast" evidence=IMP

UNIPROTKB|Q4KB09 vanA "Vanillate O-demethylase, oxygenase subunit" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 186 (70.5 bits), Expect = 5.8e-12, P = 5.8e-12
 Identities = 38/110 (34%), Positives = 54/110 (49%)

Query:   215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG 274
             KN W+      +L+   +    C E   V +R  +G    V++ C HR  PL LG V  G
Sbjct:     4 KNAWYVACTPDELQGKPLGRQICGEH-MVFYRAHEGRVTAVEDFCPHRGAPLSLGYVENG 62

Query:   275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKI-KSLPCFEQEGMIWIWPGDE 323
              + C YHG     DGK  +MP  ++R     K+    E+ G IW+WPGD+
Sbjct:    63 NLVCGYHGLVMGCDGKTVEMPGQRVRGFPCNKTFAAVERYGFIWVWPGDQ 112

GO:0006725 "cellular aromatic compound metabolic process" evidence=ISS

GO:0018489 "vanillate monooxygenase activity" evidence=ISS

UNIPROTKB|Q48IV9 vanA "Vanillate monooxygenase, oxygenase subunit" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 176 (67.0 bits), Expect = 8.5e-11, P = 8.5e-11
 Identities = 36/109 (33%), Positives = 54/109 (49%)

Query:   215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG 274
             KN W+    + ++ D  +    C  E  V +R ++     +++ C HR  PL LG V  G
Sbjct:     4 KNAWYVACTADEVADKPLGRQIC-NERMVFYRDQNQQVVALEDFCPHRGAPLSLGYVENG 62

Query:   275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKI-KSLPCFEQEGMIWIWPGD 322
             ++ C YHG     DGK   MP  ++R     K+    E+ G IW+WPGD
Sbjct:    63 QLVCGYHGLVMGGDGKTAAMPGQRVRGFPCNKTFAAVERYGFIWVWPGD 111

GO:0018489 "vanillate monooxygenase activity" evidence=ISS

GO:0042190 "vanillin catabolic process" evidence=ISS

UNIPROTKB|Q4KAM4 prnD "Aminopyrrolnitrin oxidase PrnD" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 159 (61.0 bits), Expect = 7.9e-09, P = 7.9e-09
 Identities = 38/128 (29%), Positives = 55/128 (42%)

Query:   212 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV 271
             TR+   W+    S  L+D        F  P+V +R   G    +   C+H    L  G +
Sbjct:    23 TRVAASWYVAMRSNGLRDKPK-ELTLFGRPYVAWRAATGQAVVMDRHCSHLGANLADGRI 81

Query:   272 NEGRIQCPYHGWEYSTDGKCEKMPS-----TQL----RNVKIKSLPCFEQEGMIWIWPGD 322
              +G IQCP+H W Y   GKC  +P       QL    R  +  +L   E+ G +W+W G 
Sbjct:    82 KDGCIQCPFHHWRYDEQGKCVHIPGHSEVVRQLEPVPRAARQPTLVTTERYGYVWVWYGS 141

Query:   323 EPPTATIP 330
               P   +P
Sbjct:   142 PQPLHPLP 149

GO:0003824 "catalytic activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0019748 "secondary metabolic process" evidence=ISS

UNIPROTKB|D5IGG0 carAa "Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa" [Sphingomonas sp. (taxid:28214)]

 Score = 156 (60.0 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 43/141 (30%), Positives = 70/141 (49%)

Query:   208 QPY-NTRL--KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC 264
             +PY   +L  +N W+PV  ++++ + T VP     E  ++     G    +Q+ C HR  
Sbjct:    16 EPYIRAKLGFRNHWYPVRLASEIAEGTPVPVKLLGEK-ILLNRVGGKVYAIQDRCLHRGV 74

Query:   265 PL--HLGSVNEGRIQCPYHGWEYS-TDGKCEKM---P-STQLRNVKIKSLPCFEQEGMIW 317
              L   +   ++  I C YHGW Y   DG+   +   P S Q+    +K+ P  E +G+I+
Sbjct:    75 TLSDRVECYSKNTISCWYHGWTYRWDDGRLVDILTNPGSVQIGRRALKTFPVEEAKGLIF 134

Query:   318 IWPGDEPPTATIPCLLPPSGF 338
             ++ GD  PT  I  + PP GF
Sbjct:   135 VYVGDGEPTPLIEDV-PP-GF 153

GO:0018564 "carbazole 1,9a-dioxygenase activity" evidence=ISS

GO:0046232 "carbazole catabolic process" evidence=IDA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISS

TAIR|locus:2082122 ACD1 "ACCELERATED CELL DEATH 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 38/122 (31%), Positives = 57/122 (46%)

Query:   215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVI-FRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
             ++ W+PV+   DL  +   PF       V+ F   D       + C HR  PL  G ++E
Sbjct:    85 RDHWYPVSLVEDLDPNVPTPFQLLGRDLVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDE 144

Query:   274 -GRIQCPYHGWEYSTDGKCEKMPST-----QLRNVK------IKSLPCFEQEGMIWIWPG 321
              G +QC YHGW +   G C ++P       + R VK      IK  P    +G++++WP 
Sbjct:   145 NGHLQCSYHGWSFGGCGSCTRIPQAATSGPEARAVKSPRACAIK-FPTMVSQGLLFVWP- 202

Query:   322 DE 323
             DE
Sbjct:   203 DE 204

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010277 "chlorophyllide a oxygenase [overall

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=TAS

GO:0032441 "pheophorbide a oxygenase activity" evidence=IDA

GO:0051536 "iron-sulfur cluster binding" evidence=ISS

GO:0009908 "flower development" evidence=IMP

GO:0010154 "fruit development" evidence=IMP

GO:0015996 "chlorophyll catabolic process" evidence=IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0008219 "cell death" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

FB|FBgn0259697 nvd "neverland" [Drosophila melanogaster (taxid:7227)]

 Score = 150 (57.9 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 43/127 (33%), Positives = 60/127 (47%)

Query:   216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG-SVNEG 274
             N W+ +  S+ LK        C  E  VIFR K  I   +   C H    L +G SV + 
Sbjct:    95 NGWYGILKSSQLKAGEATCVSCLGEDLVIFRSKKDIVFILDAYCPHLGANLGIGGSVADD 154

Query:   275 RIQCPYHGWEY-STDGKCEKMP-STQL-RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPC 331
              + CP+H W++  TDG C  +P ST + +  K+K     E +G I+IW   E     +P 
Sbjct:   155 CVICPFHQWKFRGTDGLCINIPYSTSVPKGSKLKKWISQEVDGFIFIWYHAEQ--TELPW 212

Query:   332 LLP-PSG 337
              LP P G
Sbjct:   213 DLPVPMG 219

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0007552 "metamorphosis" evidence=IMP

GO:0035264 "multicellular organism growth" evidence=IMP

GO:0002168 "instar larval development" evidence=IMP

GO:0045456 "ecdysteroid biosynthetic process" evidence=IMP

UNIPROTKB|F1NKZ9 LOC427775 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 146 (56.5 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 40/131 (30%), Positives = 57/131 (43%)

Query:   193 KGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIP 252
             +G   R+S        PY     N W+ V  S  L    +       E    FR +DG  
Sbjct:    51 RGLSARRSRRPGALPPPY----PNGWYRVLDSAQLPRGAVRSLALLGERLAAFRTQDGQA 106

Query:   253 GCVQNTCAHRACPLHLGSVNEGR-IQCPYHGWEY-STDGKCEKMP-STQLRN-VKIKSLP 308
               V   C H    L  G    G  I+CP+HGW +   DGKC  +P + ++ +  K++S P
Sbjct:   107 HVVDAYCPHLGADLAAGGRVVGSCIECPFHGWRFRGEDGKCTHIPYAGKVPDFAKVRSWP 166

Query:   309 CFEQEGMIWIW 319
             C E  GM+ +W
Sbjct:   167 CCEVNGMLLLW 177

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

ZFIN|ZDB-GENE-040718-356 zgc:92275 "zgc:92275" [Danio rerio (taxid:7955)]

 Score = 143 (55.4 bits), Expect = 8.0e-07, P = 8.0e-07
 Identities = 33/108 (30%), Positives = 51/108 (47%)

Query:   216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-VNEG 274
             N W+ V  S  L+   +       +   +FRG+DG    V   C H    L +G  V  G
Sbjct:   121 NGWYRVLDSHMLERGDVKSVTVLGQQVAVFRGQDGKAYVVDAYCPHLGANLAVGGRVVGG 180

Query:   275 RIQCPYHGWEY-STDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIW 319
              I+CP+HGW++   DG+C K+P         K++  P  E  G++ +W
Sbjct:   181 CIECPFHGWQFRGVDGRCVKIPYADKVPEFAKVRCWPSCEINGLVLVW 228

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S7E1	CAO_ORYSJ	1, ., 1, 4, ., 1, 3, ., 1, 2, 2	0.7300	0.9622	0.7060	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.13.12	0.963
3rd Layer	1.13.12.14	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	397
PLN02281	536	PLN02281, PLN02281, chlorophyllide a oxygenase	0.0
cd04337	129	cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a o	1e-86
PLN00095	394	PLN00095, PLN00095, chlorophyllide a oxygenase; Pr	9e-49
cd03469	118	cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron o	1e-32
COG4638	367	COG4638, HcaE, Phenylpropionate dioxygenase and re	1e-29
cd03479	144	cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-hem	4e-29
cd03532	116	cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-hem	6e-27
cd04338	134	cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa L	4e-25
cd03480	138	cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron	6e-19
pfam00355	99	pfam00355, Rieske, Rieske [2Fe-2S] domain	3e-18
cd03467	98	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster	1e-17
cd03537	123	cd03537, Rieske_RO_Alpha_PrnD, This alignment mode	5e-14
cd03548	136	cd03548, Rieske_RO_Alpha_OMO_CARDO, Rieske non-hem	9e-14
PLN02518	539	PLN02518, PLN02518, pheophorbide a oxygenase	1e-12
cd03531	115	cd03531, Rieske_RO_Alpha_KSH, The alignment model	8e-11
cd03478	95	cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing f	2e-08
COG2146	106	COG2146, {NirD}, Ferredoxin subunits of nitrite re	3e-08
cd03542	123	cd03542, Rieske_RO_Alpha_HBDO, Rieske non-heme iro	1e-07
cd03535	123	cd03535, Rieske_RO_Alpha_NDO, Rieske non-heme iron	4e-07
cd03541	118	cd03541, Rieske_RO_Alpha_CMO, Rieske non-heme iron	6e-07
cd03528	98	cd03528, Rieske_RO_ferredoxin, Rieske non-heme iro	5e-06
TIGR03229	433	TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenas	9e-06
cd03538	146	cd03538, Rieske_RO_Alpha_AntDO, Rieske non-heme ir	6e-05
cd03545	150	cd03545, Rieske_RO_Alpha_OHBDO_like, Rieske non-he	3e-04
cd03472	128	cd03472, Rieske_RO_Alpha_BPDO_like, Rieske non-hem	3e-04
cd03539	129	cd03539, Rieske_RO_Alpha_S5H, This alignment model	3e-04
TIGR03228	438	TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxyge	5e-04
cd03530	98	cd03530, Rieske_NirD_small_Bacillus, Small subunit	5e-04

>gnl|CDD|177920 PLN02281, PLN02281, chlorophyllide a oxygenase

 Score =  605 bits (1561), Expect = 0.0
 Identities = 281/386 (72%), Positives = 325/386 (84%), Gaps = 2/386 (0%)

Query: 3   AIATAAALSLPISL--YRPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDP 60
           A+ + +ALSLPIS    R + ++ KK V+G FRVFA+FG+E GLV+KKS W  LFDVEDP
Sbjct: 4   AVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDP 63

Query: 61  RSKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI 120
           RSK P  KGKFLDVNQA+EVAR+DIQY DWRARQD+LTIM+LH+KVV+VLNPLAR+YKSI
Sbjct: 64  RSKAPPYKGKFLDVNQAIEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSI 123

Query: 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQDRHTSGTDQTCA 180
           GT+KKELA LQE+L++AH+QVHISEARV+TALDKLA+ME LVNDRLL  R  +  D+  +
Sbjct: 124 GTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAHMEELVNDRLLPGRVVTELDKPSS 183

Query: 181 SPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEE 240
           S + S   LD  K     KSLNVSGPV PY+  LKNFW+PVAF+ DLK DTMVP +CFE+
Sbjct: 184 STTASAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIECFEQ 243

Query: 241 PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300
           PWVIFRG+DG PGCV+NTCAHRACPL LG+VNEGRIQCPYHGWEYSTDG+C+KMPST+L 
Sbjct: 244 PWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLL 303

Query: 301 NVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLL 360
            VKIKSLPC EQEGMIWIWPGDEPP   +P L PPSGF IHAE+VM+LP+EHGLLLDNLL
Sbjct: 304 KVKIKSLPCLEQEGMIWIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLL 363

Query: 361 DLAHAPFTHTSTFAKGWSVPRFVKLM 386
           DLAHAPFTHTSTFAKGWSVP  VK +
Sbjct: 364 DLAHAPFTHTSTFAKGWSVPSLVKFL 389

Length = 536

>gnl|CDD|239829 cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b

 Score =  258 bits (661), Expect = 1e-86
 Identities = 81/129 (62%), Positives = 96/129 (74%)

Query: 201 LNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCA 260
             V G        L+NFW+PV FS DLK DTMVPF+ F +PWV+FR +DG PGC+++ CA
Sbjct: 1   SRVLGSSLELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECA 60

Query: 261 HRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWP 320
           HRACPL LG V EGRIQCPYHGWEY  DG+C KMPST+  NV I +LPC EQ+GMIW+WP
Sbjct: 61  HRACPLSLGKVIEGRIQCPYHGWEYDGDGECTKMPSTKCLNVGIAALPCMEQDGMIWVWP 120

Query: 321 GDEPPTATI 329
           GD+PP A  
Sbjct: 121 GDDPPAALP 129

CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner chloroplast membrane; Ptc 52, a novel 52 kDa protein isolated from chloroplasts; and LLS1/Pao (Lethal-leaf spot 1/pheophorbide a oxygenase). Length = 129

>gnl|CDD|165668 PLN00095, PLN00095, chlorophyllide a oxygenase; Provisional

 Score =  169 bits (429), Expect = 9e-49
 Identities = 65/169 (38%), Positives = 95/169 (56%), Gaps = 22/169 (13%)

Query: 215 KNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
           +  WFPVAF+  L+D D ++ FD F  PWV+FR  DG  GC+++ CAHRACPL LG + +
Sbjct: 70  RAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVD 129

Query: 274 GRIQCPYHGWEYSTDGKCEKMPSTQ--LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPC 331
           G+ QCPYHGWEY T G+C KMPS +  L+ V   + P  E++G I++W G+  P   +  
Sbjct: 130 GKAQCPYHGWEYETGGECAKMPSCKKFLKGVFADAAPVIERDGFIFLWAGESDPADFVGP 189

Query: 332 -------------------LLPPSGFEIHAEIVMELPIEHGLLLDNLLD 361
                                P  GF   AE++ ++ ++   +L+ LL 
Sbjct: 190 EAACESIDDDVLAANEPGMFAPGEGFTPMAEVIADIKLDADEVLERLLA 238

Length = 394

>gnl|CDD|239551 cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms

 Score =  118 bits (299), Expect = 1e-32
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 8/116 (6%)

Query: 218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGR 275
           W+ V  S++L +    V  +   EP V+ R +DG      N C HR   L  G   N GR
Sbjct: 1   WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGR 60

Query: 276 IQCPYHGWEYSTDGKCEKMPSTQ------LRNVKIKSLPCFEQEGMIWIWPGDEPP 325
           + CPYHGW Y  DGK   +P  +         + ++++P  E  G+I++    + P
Sbjct: 61  LVCPYHGWTYDLDGKLVGVPREEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDAP 116

These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the initial source of two electrons for dioxygen activation. Length = 118

>gnl|CDD|226985 COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]

 Score =  117 bits (294), Expect = 1e-29
 Identities = 55/173 (31%), Positives = 74/173 (42%), Gaps = 17/173 (9%)

Query: 215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NE 273
              W+ VA S++L     +      EP V+ R KDG    + + C HR   L  G V  +
Sbjct: 25  YKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALADVCPHRGARLSEGRVGGK 84

Query: 274 GRIQCPYHGWEYSTDGKCEKMPSTQLR------NVKIKSLPCFEQEGMIWIWPGDEPPTA 327
           GR+ CPYHGW Y  DG+   +P+             +K  P  E+ G IWIW GD PP A
Sbjct: 85  GRLTCPYHGWTYDLDGRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAA 144

Query: 328 TIPCLLPPSGFEIHAEIVM-------ELPIEHGLLLDNLLD-LAHAPFTHTST 372
                LPP+         +        +P    L ++N LD   H PF H   
Sbjct: 145 --EAFLPPAEPYEDDRSRLGGGSFTINVPGNWKLAVENNLDDPYHVPFVHPGL 195

Length = 367

>gnl|CDD|239561 cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA)

 Score =  110 bits (276), Expect = 4e-29
 Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 8/129 (6%)

Query: 205 GPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRA 263
           GP  P    L+ +W PVA S++L  D   V      E  V FR   G  G +   C HR 
Sbjct: 9   GPGTPMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRG 68

Query: 264 CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP-----STQLRNVKIKSLPCFEQEGMIWI 318
             L  G V E  ++C YHGW++  DG+C +MP     S   + V+  + P  E+ G++W 
Sbjct: 69  ASLVFGRVEECGLRCCYHGWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWA 128

Query: 319 W--PGDEPP 325
           +  P +E P
Sbjct: 129 YMGPAEEAP 137

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form the 4,5-dihydro-cis-dihydrodiol of phthalate (DHD). CBDO, together with CbaC dehydrogenase, converts the environmental pollutant 3CBA to protocatechuate (PCA) and 5-Cl-PCA, which are then metabolized by the chromosomal PCA meta (extradiol) ring fission pathway. POB-dioxygenase catalyzes the initial catabolic step in the angular dioxygenation of phenoxybenzoate, converting mono- and dichlorinated phenoxybenzoates to protocatechuate and chlorophenols. These phenoxybenzoates are metabolic products formed during the degradation of pyrethroid insecticides. Length = 144

>gnl|CDD|239608 cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score =  103 bits (258), Expect = 6e-27
 Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 3/113 (2%)

Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
            +N W+  A++ +L  D  +      EP V++R +DG    +++ C HR+ PL  GSV  
Sbjct: 2   PRNAWYVAAWADEL-GDKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEG 60

Query: 274 GRIQCPYHGWEYSTDGKCEKMP--STQLRNVKIKSLPCFEQEGMIWIWPGDEP 324
           G + C YHG E+ +DG+C  MP          ++S P  E++ +IWIW GD  
Sbjct: 61  GGLVCGYHGLEFDSDGRCVHMPGQERVPAKACVRSYPVVERDALIWIWMGDAA 113

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degradation pathway of lignin-derived compounds such as ferulic acid and vanillin by soil microbes. DDmC is the oxygenase component of a three-component dicamba O-demethylase found in Pseudomonas maltophila, that catalyzes the conversion of a widely used herbicide called herbicide dicamba (2-methoxy-3,6-dichlorobenzoic acid) to DCSA (3,6-dichlorosalicylic acid). Length = 116

>gnl|CDD|239830 cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane

 Score = 99.1 bits (247), Expect = 4e-25
 Identities = 39/126 (30%), Positives = 71/126 (56%), Gaps = 11/126 (8%)

Query: 207 VQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL 266
           V  Y+ R +  W+P+    D+  D  +    ++EP+V+FR ++G   C+++ C HR   L
Sbjct: 9   VAEYDWREE--WYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKL 66

Query: 267 HLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL-------RNVKIKSLPCFEQEGMIWIW 319
             G + +G+++C YHGW++  +GKC K+P  QL       +N  +KS    + +G++W+W
Sbjct: 67  SEGQLIDGKLECLYHGWQFGGEGKCVKIP--QLPADAKIPKNACVKSYEVRDSQGVVWMW 124

Query: 320 PGDEPP 325
             +  P
Sbjct: 125 MSEATP 130

This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Length = 134

>gnl|CDD|239562 cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1)

 Score = 82.0 bits (203), Expect = 6e-19
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 9/116 (7%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVI-FRGKDGIPGCVQNTCAHRACPLHLGSVNE-GR 275
           W+PVA+  DL      PF       VI +           + C HR  PL  G ++E G 
Sbjct: 18  WYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGC 77

Query: 276 IQCPYHGWEYSTDGKCEKMP--STQLRNVK-----IKSLPCFEQEGMIWIWPGDEP 324
           ++CPYHGW +   G C+++P  +   +        + SLP   ++G++++WPG+  
Sbjct: 78  LECPYHGWSFDGSGSCQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPE 133

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The Arabidopsis-accelerated cell death gene ACD1 is involved in oxygenation of PaO. Length = 138

>gnl|CDD|215875 pfam00355, Rieske, Rieske [2Fe-2S] domain

 Score = 78.7 bits (194), Expect = 3e-18
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 218 WFPVAFSTDLKDDT-MVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NE 273
           W PV   ++L +       D   E+P V+ R KDG    + N C HR  PL  G V   +
Sbjct: 2   WVPVCHESELPEPGDFKTVDLDGEDPVVVRRDKDGEVRALSNVCTHRGAPLSRGGVGNEK 61

Query: 274 GRIQCPYHGWEYS-TDGKCEKMPSTQLRN 301
           G  +CPYHGW +  + GK    P+ +   
Sbjct: 62  GGFECPYHGWRFDLSTGKLVGGPAPRPLK 90

The rieske domain has a [2Fe-2S] centre. Two conserved cysteines that one Fe ion while the other Fe ion is coordinated by two conserved histidines. Length = 99

>gnl|CDD|239550 cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes

 Score = 77.1 bits (190), Expect = 1e-17
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           W  V   ++L             P V+ R + G    + N C H+ CPL  G   +G I 
Sbjct: 1   WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIV 60

Query: 278 CPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFE--QEGMIWIW 319
           CP HG  +    G+    P+ +        LP +    EG   +W
Sbjct: 61  CPCHGSRFDLRTGEVVSGPAPR-------PLPKYPVKVEGDGVVW 98

The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis. Length = 98

>gnl|CDD|239611 cd03537, Rieske_RO_Alpha_PrnD, This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD)

 Score = 68.0 bits (166), Expect = 5e-14
 Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           W+    S DLKD        F  P V +RG  G    +   C+H    L  G V +G IQ
Sbjct: 4   WYVAMRSDDLKDKP-TELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQ 62

Query: 278 CPYHGWEYSTDGKCEKMPSTQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 325
           CP+H W Y   G+C  +P             R  +  +L   E+ G +W+W G   P
Sbjct: 63  CPFHHWRYDEQGQCVHIPGHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQP 119

PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis. Length = 123

>gnl|CDD|239617 cd03548, Rieske_RO_Alpha_OMO_CARDO, Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score = 67.4 bits (165), Expect = 9e-14
 Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 16/135 (11%)

Query: 208 QPYNTR---LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC 264
           QPY       +N W+P  FS +L++          EP ++ R  DG    +++ C HR  
Sbjct: 2   QPYIDAKWGFRNHWYPALFSHELEEGEPKGIQLCGEP-ILLRRVDGKVYALKDRCLHRGV 60

Query: 265 PL--HLGSVNEGRIQCPYHGWEYS-TDGKCEKM----PSTQLRNVKIKSLPCFEQEGMIW 317
           PL        +G I C YHGW Y   DGK   +        +    +K+ P  E +GMI+
Sbjct: 61  PLSKKPECFTKGTITCWYHGWTYRLDDGKLVTILANPDDPLIGRTGLKTYPVEEAKGMIF 120

Query: 318 IWPGDE-----PPTA 327
           ++ GD      PP A
Sbjct: 121 VFVGDGDYADPPPLA 135

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the reduced pyridine nucleotide to the active site of OMO, where O2 activation and 2-oxoquinoline hydroxylation occurs. CARDO, which contains oxygenase (CARDO-O), ferredoxin (CARDO-F) and ferredoxin reductase (CARDO-R) components, catalyzes the dihydroxylation at the C1 and C9a positions of carbazole. The oxygenase component of OMO and CARDO contain only alpha subunits arranged in a trimeric structure. Length = 136

>gnl|CDD|215283 PLN02518, PLN02518, pheophorbide a oxygenase

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 52/184 (28%), Positives = 77/184 (41%), Gaps = 40/184 (21%)

Query: 215 KNFWFPVAFSTDLKDDTMVPF-----------DCFEEPWVIFRGKDGIPGCVQNTCAHRA 263
           ++ W+PV+   DL      PF           D  +  WV F  K          C HR 
Sbjct: 88  RDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDK----------CPHRL 137

Query: 264 CPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPST-----QLRNVK-----IKSLPCFEQ 312
            PL  G ++E G +QC YHGW +   G C ++P       + R VK         P    
Sbjct: 138 APLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVS 197

Query: 313 EGMIWIWP---GDEPPTATIPCLLPPSGFEIHA----EIVMELPIEHGLLLDNLLDLAHA 365
           +G++++WP   G E   AT P +LP   F+        I  +L   +  L++N+ D +H 
Sbjct: 198 QGLLFVWPDENGWERAQATKPPMLPDE-FDDPEFSTVTIQRDLFYGYDTLMENVSDPSHI 256

Query: 366 PFTH 369
            F H
Sbjct: 257 DFAH 260

Length = 539

>gnl|CDD|239607 cd03531, Rieske_RO_Alpha_KSH, The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH)

 Score = 58.6 bits (142), Expect = 8e-11
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           W  +  + D +D      + F    V+F   DG    +   C H    L  G+V    I 
Sbjct: 2   WHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIA 61

Query: 278 CPYHGWEYSTDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIW---PGDEPPT 326
           CP+H W +  DG+C+ +P  +      + ++ P  E+ G +++W    G+ PP 
Sbjct: 62  CPFHDWRWGGDGRCKAIPYARRVPPLARTRAWPTLERNGQLFVWHDPEGNPPPP 115

The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia. Length = 115

>gnl|CDD|239560 cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox)

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 221 VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPY 280
           V   +DL D  M   D  +   ++ R    +   +   C H   PL  G + +GRI+CP+
Sbjct: 3   VCRLSDLGDGEMKEVDVGDGKVLLVRQGGEV-HAIGAKCPHYGAPLAKGVLTDGRIRCPW 61

Query: 281 HGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFE 311
           HG  ++   G  E  P+       + SLPC+E
Sbjct: 62  HGACFNLRTGDIEDAPA-------LDSLPCYE 86

The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner. Length = 95

>gnl|CDD|225057 COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRI 276
           W  +    DL +   V        + +    DG    + N C H   PL  G V  +  +
Sbjct: 5   WIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETV 64

Query: 277 QCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIW 319
            CP HG  +    G+C + P+ +     +K+ P   + G +++ 
Sbjct: 65  VCPLHGARFDLRTGECLEPPAGK----TLKTYPVRVEGGRVFVD 104

Length = 106

>gnl|CDD|239615 cd03542, Rieske_RO_Alpha_HBDO, Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 240 EPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEK 293
           +P VI R KDG      N C+HR   L      N+G   CP+HGW +S  GK  K
Sbjct: 24  QPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLK 78

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol. Length = 123

>gnl|CDD|239609 cd03535, Rieske_RO_Alpha_NDO, Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 243 VIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 298
           ++ R +DG    + N+C HR    C   +G  N    +CPYHGW Y   G+   +P+ Q
Sbjct: 29  IVCRDEDGEIRAMFNSCRHRGMQVCRAEMG--NTSHFRCPYHGWTYRNTGRLVGVPAQQ 85

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 100 substrates. Included in its varied activities are the enantiospecific cis-dihydroxylation of polycyclic aromatic hydrocarbons and benzocycloalkenes, benzylic hydroxylation, N- and O-dealkylation, sulfoxidation and desaturation reactions. Length = 123

>gnl|CDD|239614 cd03541, Rieske_RO_Alpha_CMO, Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 242 WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDG---KCEKMPSTQ 298
           +V+ R  +G      N C HRA  L  GS  +    CPYHGW Y  DG   K  +    Q
Sbjct: 27  YVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKATQATGIQ 86

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX). Length = 118

>gnl|CDD|239604 cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO)

 Score = 44.4 bits (106), Expect = 5e-06
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           W  V    +L +      D    P  ++R          + C H    L  G V  G I+
Sbjct: 1   WVRVCAVDELPEGEPKRVDVGGRPIAVYRVDGEF-YATDDLCTHGDASLSEGYVEGGVIE 59

Query: 278 CPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIW 319
           CP HG  +    GK   +P+T      +K+ P   ++G +++ 
Sbjct: 60  CPLHGGRFDLRTGKALSLPAT----EPLKTYPVKVEDGDVYVD 98

The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the insertions that give other Rieske proteins unique structural features are missing. CARDO catalyzes dihydroxylation at the C1 and C9a positions of carbazole. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes. Length = 98

>gnl|CDD|132273 TIGR03229, benzo_1_2_benA, benzoate 1,2-dioxygenase, large subunit

 Score = 47.2 bits (112), Expect = 9e-06
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 240 EPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 298
           +P  I R KDG      N C+HR   L      N+    CP+HGW ++  GK  K     
Sbjct: 62  QPIFIARNKDGELNAFINACSHRGAMLCRHKRGNKTTYTCPFHGWTFNNSGKLLK----- 116

Query: 299 LRNVKIKSLP-CFEQEG 314
           +++ +    P CF ++G
Sbjct: 117 VKDPEDAGYPECFNKDG 133

Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13) [Energy metabolism, Other]. Length = 433

>gnl|CDD|239612 cd03538, Rieske_RO_Alpha_AntDO, Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHL-GSVNEGRI-QCPYHGWEYSTDG 289
           ++P V+ R  DG    + N C H+   +   G  N G+  +CPYH W + TDG
Sbjct: 45  DQPVVMVRHTDGSVHVLYNRCPHKGTKIVSDGCGNTGKFFRCPYHAWSFKTDG 97

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine. Length = 146

>gnl|CDD|239616 cd03545, Rieske_RO_Alpha_OHBDO_like, Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
           + P V+ R +DG      N CAHR    C    G  N+G + C YH W Y   G  + +P
Sbjct: 48  DTPVVVTRAEDGSLHAWVNRCAHRGALVCRERRG--NDGSLTCVYHQWAYDLKGNLKGVP 105

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobenzoates appear to be particularly recalcitrant to biodegradation, several strains utilize 2-CBA and the dCBA derivatives as a sole carbon and energy source. S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits. TERDOS is present in gram-positive bacteria and proteobacteria where it converts terephthalate (1,4-dicarboxybenzene) to protocatechuate as part of the terephthalate degradation pathway. The oxygenase component of TERDOS, called TerZ, is a hetero-hexamer with 3 alpha (TerZalpha) and 3 beta (TerZbeta) subunits. Length = 150

>gnl|CDD|239554 cd03472, Rieske_RO_Alpha_BPDO_like, Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO)

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
           E+P ++ R KDG      N C HR    C    G  N     C YHGW Y T G    +P
Sbjct: 31  EDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAG--NAKAFTCTYHGWAYDTAGNLVNVP 88

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is intermediate in size between ethylbenzene and biphenyl. NBDO catalyzes the initial reaction in nitrobenzene degradation, oxidizing the aromatic rings of mono- and dinitrotoluenes to form catechol and nitrite. NBDO belongs to the naphthalene subfamily of ROs. AkbDO is involved in alkylbenzene catabolism, converting o-xylene to 2,3- and 3,4-dimethylphenol and ethylbenzene to cis-dihydrodiol. DFDO is involved in dibenzofuran degradation. Length = 128

>gnl|CDD|239613 cd03539, Rieske_RO_Alpha_S5H, This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H)

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
           E   ++ R  DG    V+N CAHR    C    G  N     CPYH W YS  G  + +P
Sbjct: 23  ERSVIMTRDPDGGINVVENVCAHRGMRFCRERNG--NAKDFVCPYHQWNYSLKGDLQGVP 80

Query: 296 STQLRNVK 303
               R VK
Sbjct: 81  F--RRGVK 86

S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits. Length = 129

>gnl|CDD|132272 TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxygenase, large subunit

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 240 EPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEGRIQCPYHGWEYSTDGKCEKM 294
           +P ++ R   G    + N C HR   L  +G  N+    CP+H W Y +DG+  K+
Sbjct: 62  QPMIVTRDGKGELHALVNACQHRGATLTRVGKGNQSTFTCPFHAWCYKSDGRLVKV 117

Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases [Energy metabolism, Amino acids and amines]. Length = 438

>gnl|CDD|239606 cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 244 IFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGW 283
           +FR  D     ++N C H+  PL  G V+   + CP H W
Sbjct: 27  VFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNW 66

The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	397
PLN02281	536	chlorophyllide a oxygenase	100.0
PLN02518	539	pheophorbide a oxygenase	100.0
PLN00095	394	chlorophyllide a oxygenase; Provisional	100.0
COG4638	367	HcaE Phenylpropionate dioxygenase and related ring	100.0
TIGR03228	438	anthran_1_2_A anthranilate 1,2-dioxygenase, large	100.0
TIGR03229	433	benzo_1_2_benA benzoate 1,2-dioxygenase, large sub	100.0
cd04337	129	Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase)	99.97
cd03479	144	Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxy	99.96
cd04338	134	Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-relate	99.96
cd03537	123	Rieske_RO_Alpha_PrnD This alignment model represen	99.96
cd03531	115	Rieske_RO_Alpha_KSH The alignment model represents	99.96
cd03480	138	Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase	99.95
cd03532	116	Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxy	99.95
cd03541	118	Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase	99.95
cd03548	136	Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxy	99.95
cd03545	150	Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron ox	99.95
cd03539	129	Rieske_RO_Alpha_S5H This alignment model represent	99.94
cd03472	128	Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxy	99.94
cd03469	118	Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (	99.94
cd03538	146	Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygena	99.94
cd03535	123	Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase	99.93
cd03536	123	Rieske_RO_Alpha_DTDO This alignment model represen	99.93
cd03528	98	Rieske_RO_ferredoxin Rieske non-heme iron oxygenas	99.92
cd03474	108	Rieske_T4moC Toluene-4-monooxygenase effector prot	99.92
cd03530	98	Rieske_NirD_small_Bacillus Small subunit of nitrit	99.92
cd03542	123	Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenas	99.92
TIGR02377	101	MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE	99.91
cd03529	103	Rieske_NirD Assimilatory nitrite reductase (NirD)	99.9
TIGR02378	105	nirD_assim_sml nitrite reductase [NAD(P)H], small	99.9
PRK09965	106	3-phenylpropionate dioxygenase ferredoxin subunit;	99.89
cd03478	95	Rieske_AIFL_N AIFL (apoptosis-inducing factor like	99.89
PF13806	104	Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A	99.86
PF00355	97	Rieske: Rieske [2Fe-2S] domain; InterPro: IPR01794	99.86
PRK09511	108	nirD nitrite reductase small subunit; Provisional	99.86
cd03467	98	Rieske Rieske domain; a [2Fe-2S] cluster binding d	99.85
COG2146	106	{NirD} Ferredoxin subunits of nitrite reductase an	99.84
cd03477	91	Rieske_YhfW_C YhfW family, C-terminal Rieske domai	99.82
cd03476	126	Rieske_ArOX_small Small subunit of Arsenite oxidas	99.78
cd03471	126	Rieske_cytochrome_b6f Iron-sulfur protein (ISP) co	99.73
TIGR02694	129	arsenite_ox_S arsenite oxidase, small subunit. Thi	99.7
cd03470	126	Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) co	99.67
cd03473	107	Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophospha	99.66
PRK13474	178	cytochrome b6-f complex iron-sulfur subunit; Provi	99.56
TIGR01416	174	Rieske_proteo ubiquinol-cytochrome c reductase, ir	99.44
cd03475	171	Rieske_SoxF_SoxL SoxF and SoxL family, Rieske doma	99.16
COG0723	177	QcrA Rieske Fe-S protein [Energy production and co	98.83
TIGR03171	321	soxL2 Rieske iron-sulfur protein SoxL2. This iron-	98.47
KOG1671	210	consensus Ubiquinol cytochrome c reductase, subuni	98.37
cd08884	205	RHO_alpha_C_GbcA-like C-terminal catalytic domain	97.89
PF00848	209	Ring_hydroxyl_A: Ring hydroxylating alpha subunit	97.82
cd08881	206	RHO_alpha_C_NDO-like C-terminal catalytic domain o	97.37
PF11723	240	Aromatic_hydrox: Homotrimeric ring hydroxylase; In	95.52
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	95.32
PRK00294	173	hscB co-chaperone HscB; Provisional	80.65

>PLN02281 chlorophyllide a oxygenase

Probab=100.00  E-value=7.2e-118  Score=922.54  Aligned_cols=386  Identities=72%  Similarity=1.232  Sum_probs=358.0

Q ss_pred             Cc-hhhhhhccccccccc--cccccccccccccceEEEEEecCCCccccccCceeeeeeecCCCCCCCCcCCceeehhhH
Q 015956            1 MT-AIATAAALSLPISLY--RPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQA   77 (397)
Q Consensus         1 ~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (397)
                      || +++|+++||||+||+  ++++|++||||+|||+||||||||+|+++|||.|++||||||||+++|++||||||||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (536)
T PLN02281          1 MNAAVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDPRSKAPPYKGKFLDVNQA   80 (536)
T ss_pred             CCccccchhhhccChhhhcccccccccccccCCceEEEEEEcccccccccccCceEeeeccCCCccCcccccccccHHHH
Confidence            67 499999999999999  889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccccccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHH
Q 015956           78 LEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY  157 (397)
Q Consensus        78 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~  157 (397)
                      |||+||||||||||||||+||||.||+||||||||||||||||||||||||||||||+|||+|||+||+||++|||||++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (536)
T PLN02281         81 IEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAH  160 (536)
T ss_pred             HHHHHhhhhcccchhhhhHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCcccc-ccccCCCCCCchhhhhhhcCCCCCcccccCCCCCcchhcccceEEeeecCCCCCCCceeEe
Q 015956          158 MEALVNDRLLQDRHTSGT-DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFD  236 (397)
Q Consensus       158 ~~~~~r~r~l~~ssaat~-~~asa~~~tS~e~~~~~~~~~~~~sl~v~~~~~~~~~~~~~~W~~Va~ssdL~~G~~~~v~  236 (397)
                      ||.|||+|+|+++|.+.+ .|++..++++ ...+....+++++++++++|.+||...++|.||+||.++||++|+++.++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~P~~~~lrn~Wy~Va~s~EL~~g~~~~v~  239 (536)
T PLN02281        161 MEELVNDRLLPGRVVTELDKPSSSTTASA-VELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIE  239 (536)
T ss_pred             HHHHhhhhccCCCccccccccccCCcCcc-hhhhhhhcccccccccccCCCCCcchhhhcccEEEEEHHHCCCCCeEEEE
Confidence            999999999998655544 5666665554 66677888889999999999999999999999999999999999999999


Q ss_pred             eCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCCCcccccCCccccceEEEcCEE
Q 015956          237 CFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMI  316 (397)
Q Consensus       237 i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e~~G~I  316 (397)
                      ++|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|..+....++++|||++++|+|
T Consensus       240 llG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD~dG~cv~iP~~~~~~~~l~sYPV~e~~GlV  319 (536)
T PLN02281        240 CFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMI  319 (536)
T ss_pred             ECCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEECCCCCEeeCCCCccccCCcceEeEEEECCEE
Confidence            99999999999999999999999999999999999999999999999999999999999876556789999999999999


Q ss_pred             EEeCCCCCCCCCCCCCCCCCCceEeEEEEEEEecChhhHHHhhcCCCCCCccCcccccCCCCCcceeEeee
Q 015956          317 WIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRFVKLMI  387 (397)
Q Consensus       317 wV~l~~~~p~~~lp~l~~~~g~~~~~~~~~~~~~NWKl~vEN~lD~yH~p~vH~~tf~~g~~vp~~v~f~~  387 (397)
                      |||++++++.+.+|.+..+.++.......++++|||++++||++|.||++|+|++++++++..|..+++.+
T Consensus       320 wV~lgd~~~aP~~p~ld~p~~~~~~~~~~~~~~~nwkllvENllD~~H~~fvH~~t~g~~~~~p~~v~~~~  390 (536)
T PLN02281        320 WIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLT  390 (536)
T ss_pred             EEEeCCCCCCCCCccccCcccceEEEEEEEEecCCHHHHHHhccccccccccCcccccCcccCCceeEEec
Confidence            99998765555566665544666555567889999999999999999999999999999999998887764

>PLN02518 pheophorbide a oxygenase

Probab=100.00  E-value=1.4e-35  Score=311.65  Aligned_cols=165  Identities=24%  Similarity=0.589  Sum_probs=138.5

Q ss_pred             cchhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEc-CCCcEEEEeecCCCCCCCCCCCccc-ceeEEccccCeEEcC
Q 015956          210 YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYST  287 (397)
Q Consensus       210 ~~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~-~dG~i~A~~N~CPHRGa~Ls~G~v~-~~~L~CPyHGW~Fd~  287 (397)
                      ....|++.||+||.++||++|++..++++|+++||||+ .+|+++||+|+|||||++|+.|.++ ++.|+||||||+||.
T Consensus        83 ~~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd~  162 (539)
T PLN02518         83 SKFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG  162 (539)
T ss_pred             hhhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCCEEcC
Confidence            34588999999999999998999999999999999998 8999999999999999999999985 679999999999999


Q ss_pred             CCccccCCCccc----------ccCCccccceEEEcCEEEEeCCCCC----CCCCCCCCC---CCCCceEeEEEEEEEec
Q 015956          288 DGKCEKMPSTQL----------RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIPCLL---PPSGFEIHAEIVMELPI  350 (397)
Q Consensus       288 dG~~~~vP~~~~----------~~~~L~~ypV~e~~G~IwV~l~~~~----p~~~lp~l~---~~~g~~~~~~~~~~~~~  350 (397)
                      +|+|+.+|....          ...++++|||++++|+||||++++.    +...+|.+.   +..+|... ....++++
T Consensus       163 ~G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~-~~~~~~~~  241 (539)
T PLN02518        163 CGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTV-TIQRDLFY  241 (539)
T ss_pred             CCCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeE-EEEEEEec
Confidence            999999996421          1346899999999999999998652    122344332   22344322 23557899


Q ss_pred             ChhhHHHhhcCCCCCCccCcccccC
Q 015956          351 EHGLLLDNLLDLAHAPFTHTSTFAK  375 (397)
Q Consensus       351 NWKl~vEN~lD~yH~p~vH~~tf~~  375 (397)
                      +|++++||++|.+|++|+|++++|+
T Consensus       242 ~~~~l~EN~lD~sH~pfvH~~~~G~  266 (539)
T PLN02518        242 GYDTLMENVSDPSHIDFAHHKVTGR  266 (539)
T ss_pred             CchhHHHhCCccchhceeccccccC
Confidence            9999999999999999999999886

>PLN00095 chlorophyllide a oxygenase; Provisional

Probab=100.00  E-value=3.4e-35  Score=295.28  Aligned_cols=181  Identities=40%  Similarity=0.891  Sum_probs=153.7

Q ss_pred             chhcccceEEeeecCCC-CCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCC
Q 015956          211 NTRLKNFWFPVAFSTDL-KDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDG  289 (397)
Q Consensus       211 ~~~~~~~W~~Va~ssdL-~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG  289 (397)
                      +...++.||+|++++|| ++|+++.++++|++|+|+|+.+|+++|+.|.|||||++|+.|.++++.|+||||||+||.+|
T Consensus        66 ~~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~~G  145 (394)
T PLN00095         66 TADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYETGG  145 (394)
T ss_pred             CCchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECCCC
Confidence            34568899999999999 68999999999999999999899999999999999999999999999999999999999999


Q ss_pred             ccccCCCccc--ccCCccccceEEEcCEEEEeCCCCCCCC------------------CCCC-CCCCCCceEeEEEEEEE
Q 015956          290 KCEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEPPTA------------------TIPC-LLPPSGFEIHAEIVMEL  348 (397)
Q Consensus       290 ~~~~vP~~~~--~~~~L~~ypV~e~~G~IwV~l~~~~p~~------------------~lp~-l~~~~g~~~~~~~~~~~  348 (397)
                      +|+.+|..+.  .+.++++|||++++|+||||+++..|..                  ..|. +.++++|..+.+...++
T Consensus       146 ~C~~iP~~~~~~~~~~v~tYPV~e~dGlVwVw~G~~~p~dflg~~~~~e~~~~~~~~~~~P~~~~~~~gf~~~aev~~Dl  225 (394)
T PLN00095        146 ECAKMPSCKKFLKGVFADAAPVIERDGFIFLWAGESDPADFVGPEAACESIDDDVLAANEPGMFAPGEGFTPMAEVIADI  225 (394)
T ss_pred             CEeeCCCccccccccccceEEEEEECCEEEEEeCCcchhhhccccccccccccchhhccCCcccCCCCCceEEEEEEEec
Confidence            9999997532  2356899999999999999998754431                  2343 44556888877777899


Q ss_pred             ecChhhHHHhhcCCCC-CCccCccccc----C---------------------CC-CCcceeEeeehhhh
Q 015956          349 PIEHGLLLDNLLDLAH-APFTHTSTFA----K---------------------GW-SVPRFVKLMIITVA  391 (397)
Q Consensus       349 ~~NWKl~vEN~lD~yH-~p~vH~~tf~----~---------------------g~-~vp~~v~f~~~~~~  391 (397)
                      ++.|.+++||+||..| .||+|+.||.    +                     .| .+|..+.|.+||..
T Consensus       226 p~d~~~L~ENllD~aH~a~~~~t~tf~~~~~~r~~~~~~~~~~~~~~~~~l~g~~~~~p~~~~F~ppc~~  295 (394)
T PLN00095        226 KLDADEVLERLLAIGERARREATVSFDVSDAKRGRDALFPVDGTKIIAKVLRGGRDAVPQSATFKPACVI  295 (394)
T ss_pred             cccHHHHHHhhcCccccCCccCceeeecccccccccCccchhhhhhhhhhheeecccCCcceeEcCceee
Confidence            9999999999999999 6999988884    1                     23 46777778887754

>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]

Probab=100.00  E-value=2.5e-35  Score=295.12  Aligned_cols=168  Identities=32%  Similarity=0.602  Sum_probs=139.8

Q ss_pred             cchhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccc-eeEEccccCeEEcCC
Q 015956          210 YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTD  288 (397)
Q Consensus       210 ~~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~-~~L~CPyHGW~Fd~d  288 (397)
                      +..+|.+.||+||+++||+++++.++.++|+++||+|+.||+++||.|.|||||++|+.|.+.+ +.|+||||||+||.+
T Consensus        20 ~~~~~~~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~dg~~~al~d~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~~~   99 (367)
T COG4638          20 LERIFYKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALADVCPHRGARLSEGRVGGKGRLTCPYHGWTYDLD   99 (367)
T ss_pred             HHHhhhhCEEEEccHHHCCCCCceeEEEcCeEEEEEECCCCCEEEEeccCCCCCchhccccCCCCceEecCCCceEECCC
Confidence            3456777999999999999889999999999999999999999999999999999999999988 899999999999999


Q ss_pred             CccccCCC--cc-cc---cCCccccceEEEcCEEEEeCCCCCCCC-C--CCCCC-CCCCceEe-EEEEEEEecChhhHHH
Q 015956          289 GKCEKMPS--TQ-LR---NVKIKSLPCFEQEGMIWIWPGDEPPTA-T--IPCLL-PPSGFEIH-AEIVMELPIEHGLLLD  357 (397)
Q Consensus       289 G~~~~vP~--~~-~~---~~~L~~ypV~e~~G~IwV~l~~~~p~~-~--lp~l~-~~~g~~~~-~~~~~~~~~NWKl~vE  357 (397)
                      |+|+.+|.  .. ..   ...+++||++++.|+||||++++++.. .  .|... ....+... ......+++|||.++|
T Consensus       100 G~~~~ip~~~~~~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~nwk~~vE  179 (367)
T COG4638         100 GRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAAEAFLPPAEPYEDDRSRLGGGSFTINVPGNWKLAVE  179 (367)
T ss_pred             CcEecCCccccCCCCCHhhCCccccceEEEccEEEEecCCCccChhHhcccccccccccccccCceEEEEecccceEEee
Confidence            99999994  22 12   257999999999999999999876431 1  12222 22222222 4567788999999999


Q ss_pred             hhcC-CCCCCccCcccccCCC
Q 015956          358 NLLD-LAHAPFTHTSTFAKGW  377 (397)
Q Consensus       358 N~lD-~yH~p~vH~~tf~~g~  377 (397)
                      |++| +||++++|+++++...
T Consensus       180 n~~d~~~H~~~vH~~~~~~~~  200 (367)
T COG4638         180 NNLDDPYHVPFVHPGLLGTEP  200 (367)
T ss_pred             ccCCccccccccCHHHhcccc
Confidence            8887 9999999998887654

>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit

Probab=100.00  E-value=8.8e-35  Score=299.39  Aligned_cols=165  Identities=19%  Similarity=0.339  Sum_probs=137.8

Q ss_pred             CcchhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCC-CcccceeEEccccCeEEc
Q 015956          209 PYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYS  286 (397)
Q Consensus       209 ~~~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~-G~v~~~~L~CPyHGW~Fd  286 (397)
                      .+..+|.+.|++||++++|+ +|+++++.+++++|+|+|+.+|+++||.|+|||||++|+. +.++...|+||||||+||
T Consensus        30 E~~~IF~~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a~~N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~  109 (438)
T TIGR03228        30 EMELIFEKNWIYACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHALVNACQHRGATLTRVGKGNQSTFTCPFHAWCYK  109 (438)
T ss_pred             HHHHHHhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEcccCCCCCCccccCCccccCEEEcCCCCCccc
Confidence            34567889999999999998 5999999999999999999999999999999999999996 777888999999999999


Q ss_pred             CCCccccCCCccc-------ccCCccccceEEEcCEEEEeCCCCCCCCCCCCCCC--------------CCCceEe-EEE
Q 015956          287 TDGKCEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP--------------PSGFEIH-AEI  344 (397)
Q Consensus       287 ~dG~~~~vP~~~~-------~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l~~--------------~~g~~~~-~~~  344 (397)
                      .+|+|+++|....       ...+|++++|.+++|+||+++++++++ +++++++              ..++++. +..
T Consensus       110 ~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~~-~l~e~lg~~~~~ld~~~~~~~~g~le~~~~~~  188 (438)
T TIGR03228       110 SDGRLVKVKAPGEYCEGFDKATRGLKKARIASYRGFVFVSLDVAATD-SLEDFLGDARVFLDMMVAQSPTGELEVLPGKS  188 (438)
T ss_pred             CCCceeecCcccccCCCCChhhCCCcceeEEEECCEEEEEeCCCCCC-CHHHHhhhHHHHHHHHhhccCcCceEEecceE
Confidence            9999999985421       235788899999999999999876421 2333321              1124433 345


Q ss_pred             EEEEecChhhHHHhhcCCCCCCccCccccc
Q 015956          345 VMELPIEHGLLLDNLLDLAHAPFTHTSTFA  374 (397)
Q Consensus       345 ~~~~~~NWKl~vEN~lD~yH~p~vH~~tf~  374 (397)
                      .+.++||||+.+||++|+||++++|+++++
T Consensus       189 ~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~  218 (438)
T TIGR03228       189 AYTYAGNWKLQNENGLDGYHVSTVHYNYVA  218 (438)
T ss_pred             EEEeCCchHHHHHhccccccchhhChhhHh
Confidence            778999999999999999999999988764

Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.

>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit

Probab=100.00  E-value=2.1e-33  Score=289.04  Aligned_cols=164  Identities=21%  Similarity=0.306  Sum_probs=134.7

Q ss_pred             cchhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc-ccceeEEccccCeEEcC
Q 015956          210 YNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYST  287 (397)
Q Consensus       210 ~~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~-v~~~~L~CPyHGW~Fd~  287 (397)
                      +..+|.+.|++||+.++|+ +|+++++.+++++|+|+|+.+|+++||.|+|||||++|+.|. ++.+.|+||||||+||.
T Consensus        31 ~~~IF~~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~dG~i~af~N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~~  110 (433)
T TIGR03229        31 MKHIFEGNWIYLAHESQIPNNNDYYTTYMGRQPIFIARNKDGELNAFINACSHRGAMLCRHKRGNKTTYTCPFHGWTFNN  110 (433)
T ss_pred             HHHHhhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCcEEEEeCcCCCCCCCcccccccCCCEEEcCCCCCEecC
Confidence            3457888999999999998 689999999999999999999999999999999999999864 45679999999999999


Q ss_pred             CCccccCCCccc----------ccCCccccc-eEEEcCEEEEeCCCCCCCCCCCCCCC-------------CCCceEe-E
Q 015956          288 DGKCEKMPSTQL----------RNVKIKSLP-CFEQEGMIWIWPGDEPPTATIPCLLP-------------PSGFEIH-A  342 (397)
Q Consensus       288 dG~~~~vP~~~~----------~~~~L~~yp-V~e~~G~IwV~l~~~~p~~~lp~l~~-------------~~g~~~~-~  342 (397)
                      +|+|+++|....          ...+|.+++ ++.++|+||++++++.|+  ++++++             +.++... +
T Consensus       111 ~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~~~~--l~e~Lg~~~~~ld~~~~~~~~~~~~~~~  188 (433)
T TIGR03229       111 SGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPDVLP--LEEHLGETAKIIDMIVDQSPDGLEVLRG  188 (433)
T ss_pred             CcceEeCCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCCCCC--HHHHhhhHHHHHHHHhhcCcCCCeEEee
Confidence            999999987321          135789996 666799999999877543  333322             1233332 3


Q ss_pred             EEEEEEecChhhHHHhhcCCCCCCccCcccccC
Q 015956          343 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK  375 (397)
Q Consensus       343 ~~~~~~~~NWKl~vEN~lD~yH~p~vH~~tf~~  375 (397)
                      ...+.++||||+++||++|+||++++|++++..
T Consensus       189 ~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~~  221 (433)
T TIGR03229       189 SSTYTYEGNWKLQAENGADGYHVSAVHWNYAAT  221 (433)
T ss_pred             eEEEEecCchhhhHHhccCcccchhhcccHHHh
Confidence            457889999999999999999999999776643

Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).

>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b

Probab=99.97  E-value=7.5e-31  Score=229.43  Aligned_cols=123  Identities=65%  Similarity=1.381  Sum_probs=113.5

Q ss_pred             ccCCCCCcchhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccC
Q 015956          203 VSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHG  282 (397)
Q Consensus       203 v~~~~~~~~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHG  282 (397)
                      +.++..++...|++.|++|+++++|++|+++.++++|++++|+|+.+|+++|+.|.|||+|++|+.|.+.++.|+|||||
T Consensus         3 ~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hg   82 (129)
T cd04337           3 VLGSSLELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHG   82 (129)
T ss_pred             ccccCccccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCC
Confidence            45667789999999999999999999999999999999999999889999999999999999999999989999999999


Q ss_pred             eEEcCCCccccCCCcccccCCccccceEEEcCEEEEeCCCCCC
Q 015956          283 WEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP  325 (397)
Q Consensus       283 W~Fd~dG~~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l~~~~p  325 (397)
                      |+||.+|+|+..|..+....+|++||+++++|+|||++++++|
T Consensus        83 w~Fd~tG~~~~~P~~~~~~~~l~~y~v~v~~g~V~V~~~~~~p  125 (129)
T cd04337          83 WEYDGDGECTKMPSTKCLNVGIAALPCMEQDGMIWVWPGDDPP  125 (129)
T ss_pred             CEECCCCCEEeCCcCCCccCCcceEeEEEECCEEEEEcCCCCC
Confidence            9999999999999765344689999999999999999987644

CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner

>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA)

Probab=99.96  E-value=5.5e-30  Score=227.58  Aligned_cols=130  Identities=33%  Similarity=0.714  Sum_probs=115.8

Q ss_pred             ccCCCCCcchhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEcccc
Q 015956          203 VSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYH  281 (397)
Q Consensus       203 v~~~~~~~~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyH  281 (397)
                      ..||..|+...+++.|++|+.+++|+ +|+++.+++.|.+++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||||
T Consensus         7 ~~~~~~~~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP~H   86 (144)
T cd03479           7 RVGPGTPMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCCYH   86 (144)
T ss_pred             ecCCCCchhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEccCC
Confidence            45777899999999999999999999 69999999999999999988999999999999999999999998899999999


Q ss_pred             CeEEcCCCccccCCCccc-----ccCCccccceEEEcCEEEEeCCCCCCCCCCCCC
Q 015956          282 GWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL  332 (397)
Q Consensus       282 GW~Fd~dG~~~~vP~~~~-----~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l  332 (397)
                      ||+||.+|+|+.+|..+.     ...+|++|+|++++|+|||++++..+++++|++
T Consensus        87 gw~F~~~G~~~~~P~~~~~~~~~~~~~l~~~~v~~~~G~I~V~~~~~~~~p~~~~~  142 (144)
T cd03479          87 GWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWAYMGPAEEAPEFPRY  142 (144)
T ss_pred             CcEECCCCCEEECCCCccccCCccccCcceEeEEEECCEEEEECCCCCCCCCCCCC
Confidence            999999999999997542     235799999999999999999864444445543

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th

>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane

Probab=99.96  E-value=1.5e-29  Score=222.40  Aligned_cols=116  Identities=29%  Similarity=0.832  Sum_probs=105.2

Q ss_pred             chhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCc
Q 015956          211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK  290 (397)
Q Consensus       211 ~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~  290 (397)
                      ...|++.|++|+.++||++|....++++|++|+|+|+.+|+++|++|.|||||++|+.|.+.++.|+||||||+||.+|+
T Consensus        11 ~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd~~G~   90 (134)
T cd04338          11 EYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFGGEGK   90 (134)
T ss_pred             ccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEECCCCC
Confidence            34789999999999999998899999999999999988999999999999999999999999999999999999999999


Q ss_pred             cccCCCccc-----ccCCccccceEEEcCEEEEeCCCCCCC
Q 015956          291 CEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPPT  326 (397)
Q Consensus       291 ~~~vP~~~~-----~~~~L~~ypV~e~~G~IwV~l~~~~p~  326 (397)
                      |+.+|....     ...+|++|||++++|+|||++++.+|+
T Consensus        91 ~~~~P~~~~~~~~~~~~~l~~y~v~~~~G~V~V~~~~~~~~  131 (134)
T cd04338          91 CVKIPQLPADAKIPKNACVKSYEVRDSQGVVWMWMSEATPP  131 (134)
T ss_pred             EEECCCCCccCCCCcccCcceEeEEEECCEEEEEcCCCCCC
Confidence            999987531     235699999999999999999876543

This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.

>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD)

Probab=99.96  E-value=3e-29  Score=218.19  Aligned_cols=110  Identities=33%  Similarity=0.729  Sum_probs=100.1

Q ss_pred             cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCC
Q 015956          216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP  295 (397)
Q Consensus       216 ~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP  295 (397)
                      ..||+|+.++||+ ++++.+++.|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|
T Consensus         2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd~~G~~~~iP   80 (123)
T cd03537           2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIP   80 (123)
T ss_pred             CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEECCCCCEEECC
Confidence            4799999999996 678999999999999999899999999999999999999999999999999999999999999999


Q ss_pred             Cccc---------ccCCccccceEEEcCEEEEeCCCCCCC
Q 015956          296 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPPT  326 (397)
Q Consensus       296 ~~~~---------~~~~L~~ypV~e~~G~IwV~l~~~~p~  326 (397)
                      ....         ...++++|||+|++|+||||++++.|.
T Consensus        81 ~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~~~~~  120 (123)
T cd03537          81 GHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQPL  120 (123)
T ss_pred             CCcccccccccCCcccccccEeEEEECCEEEEEcCCCCcc
Confidence            7432         136799999999999999999876554

PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.

>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH)

Probab=99.96  E-value=9.5e-29  Score=211.82  Aligned_cols=109  Identities=25%  Similarity=0.635  Sum_probs=101.1

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCCC
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPS  296 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP~  296 (397)
                      +|++|+.++||++|+++.+++.|++++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+|+|+.+|.
T Consensus         1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~~G~~~~~p~   80 (115)
T cd03531           1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGGDGRCKAIPY   80 (115)
T ss_pred             CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECCCCCEEECCc
Confidence            59999999999999999999999999999988999999999999999999999999999999999999999999999987


Q ss_pred             cccc--cCCccccceEEEcCEEEEeCCCCCC
Q 015956          297 TQLR--NVKIKSLPCFEQEGMIWIWPGDEPP  325 (397)
Q Consensus       297 ~~~~--~~~L~~ypV~e~~G~IwV~l~~~~p  325 (397)
                      .+..  ...+++|||++++|+|||+++++.+
T Consensus        81 ~~~~p~~~~l~~ypv~~~~g~v~v~~~~~~~  111 (115)
T cd03531          81 ARRVPPLARTRAWPTLERNGQLFVWHDPEGN  111 (115)
T ss_pred             ccCCCcccccceEeEEEECCEEEEECCCCCC
Confidence            5432  3578999999999999999987654

The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.

>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1)

Probab=99.95  E-value=2.2e-28  Score=216.16  Aligned_cols=113  Identities=30%  Similarity=0.797  Sum_probs=102.0

Q ss_pred             hcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcC-CCcEEEEeecCCCCCCCCCCCccc-ceeEEccccCeEEcCCCc
Q 015956          213 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK-DGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGK  290 (397)
Q Consensus       213 ~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~-dG~i~A~~N~CPHRGa~Ls~G~v~-~~~L~CPyHGW~Fd~dG~  290 (397)
                      .|++.|++|+.++||++|+++.+++.|++|+|+|+. +|+++|+.|+|||||++|+.|.+. ++.|+||||||+||.+|+
T Consensus        13 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd~tG~   92 (138)
T cd03480          13 DWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFDGSGS   92 (138)
T ss_pred             CCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEECCCCC
Confidence            578899999999999999999999999999999986 999999999999999999999875 469999999999999999


Q ss_pred             cccCCCccc-------ccCCccccceEEEcCEEEEeCCCCCC
Q 015956          291 CEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPP  325 (397)
Q Consensus       291 ~~~vP~~~~-------~~~~L~~ypV~e~~G~IwV~l~~~~p  325 (397)
                      |+.+|....       ...+|++|||++++|+|||+++++++
T Consensus        93 ~~~~P~~~~~g~~~~~~~~~l~~ypv~v~~g~V~V~~~~~~~  134 (138)
T cd03480          93 CQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPEN  134 (138)
T ss_pred             EEECCCCccccccCCCcccccceEeEEEECCEEEEecCChHh
Confidence            999997532       23679999999999999999986543

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The

>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.95  E-value=4.7e-28  Score=207.32  Aligned_cols=109  Identities=36%  Similarity=0.826  Sum_probs=100.8

Q ss_pred             cccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCcccc
Q 015956          214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK  293 (397)
Q Consensus       214 ~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~  293 (397)
                      +.+.|++|+.++||+ |+++.+.+.|++++|+|+.+|+++|++|+|||+|++|+.|.+.++.|+||||||+||.+|+|+.
T Consensus         2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd~~G~~~~   80 (116)
T cd03532           2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFDSDGRCVH   80 (116)
T ss_pred             cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEcCCCCEEe
Confidence            467899999999999 8999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             CCCccc--ccCCccccceEEEcCEEEEeCCCC
Q 015956          294 MPSTQL--RNVKIKSLPCFEQEGMIWIWPGDE  323 (397)
Q Consensus       294 vP~~~~--~~~~L~~ypV~e~~G~IwV~l~~~  323 (397)
                      +|..+.  ...+|++|||++++|+|||+++++
T Consensus        81 ~p~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~  112 (116)
T cd03532          81 MPGQERVPAKACVRSYPVVERDALIWIWMGDA  112 (116)
T ss_pred             CCCCCCCCCccccccCCEEEECCEEEEEcCCc
Confidence            997642  245799999999999999999764

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad

>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.95  E-value=1.6e-27  Score=205.85  Aligned_cols=107  Identities=25%  Similarity=0.421  Sum_probs=99.0

Q ss_pred             ceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCC
Q 015956          217 FWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP  295 (397)
Q Consensus       217 ~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP  295 (397)
                      +|++|++++||+ +|++++++++|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||++|+|+.+|
T Consensus         1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l~G~l~~~P   80 (118)
T cd03541           1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKAT   80 (118)
T ss_pred             CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcCCCeEEeCC
Confidence            599999999999 5788999999999999999999999999999999999999999989999999999999999999999


Q ss_pred             Cccc------ccCCccccceEEEcCEEEEeCCCC
Q 015956          296 STQL------RNVKIKSLPCFEQEGMIWIWPGDE  323 (397)
Q Consensus       296 ~~~~------~~~~L~~ypV~e~~G~IwV~l~~~  323 (397)
                      ....      ...+|.+++|.+++|||||+++++
T Consensus        81 ~~~~~~~~~~~~~~L~~~~~~~~~g~vfv~~~~~  114 (118)
T cd03541          81 QATGIQNFNPKELGLVPLKVAEWGPFVLISVDRS  114 (118)
T ss_pred             CcccccCCCHHHCCCceEeEEEECCEEEEEeCCC
Confidence            8653      236899999999999999999764

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).

>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.95  E-value=2.2e-27  Score=208.91  Aligned_cols=110  Identities=32%  Similarity=0.652  Sum_probs=98.8

Q ss_pred             hcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc--ccceeEEccccCeEEcC-CC
Q 015956          213 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-DG  289 (397)
Q Consensus       213 ~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~--v~~~~L~CPyHGW~Fd~-dG  289 (397)
                      .|++.|++|++++||++|+++.++++|++++|+| .+|+++|+.|+|||||++|+.|.  +.++.|+||||||+||+ +|
T Consensus        10 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r-~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~tG   88 (136)
T cd03548          10 GFRNHWYPALFSHELEEGEPKGIQLCGEPILLRR-VDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLDDG   88 (136)
T ss_pred             CcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEe-cCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCCCc
Confidence            7899999999999999999999999999999999 69999999999999999999885  46789999999999996 99


Q ss_pred             ccccCCCccc----ccCCccccceEEEcCEEEEeCCCC
Q 015956          290 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDE  323 (397)
Q Consensus       290 ~~~~vP~~~~----~~~~L~~ypV~e~~G~IwV~l~~~  323 (397)
                      +|+.+|..+.    ...+|++|||++++|+|||++++.
T Consensus        89 ~~~~~~~~p~~~~~~~~~L~~ypv~~~~g~V~v~~~~~  126 (136)
T cd03548          89 KLVTILANPDDPLIGRTGLKTYPVEEAKGMIFVFVGDG  126 (136)
T ss_pred             cEEEcccCCCccccccCCCceEeEEEECCEEEEEeCCc
Confidence            9998764332    135799999999999999999764

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the

>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins

Probab=99.95  E-value=1.5e-27  Score=213.73  Aligned_cols=115  Identities=22%  Similarity=0.396  Sum_probs=101.6

Q ss_pred             chhcc-cceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc-ccceeEEccccCeEEcC
Q 015956          211 NTRLK-NFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYST  287 (397)
Q Consensus       211 ~~~~~-~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~-v~~~~L~CPyHGW~Fd~  287 (397)
                      ..+|+ +.|++|+++++|+ +|+++.+.++|++|+|+|+.+|+++|+.|+|||||++|+.|. ++++.|+||||||+||+
T Consensus        18 ~~if~~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~g~v~A~~n~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl   97 (150)
T cd03545          18 ERIFRGKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAEDGSLHAWVNRCAHRGALVCRERRGNDGSLTCVYHQWAYDL   97 (150)
T ss_pred             HhhhCCCceEEEEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEcccCcCCCCEecccccCCCCEEECCCCCCEECC
Confidence            34676 7899999999999 599999999999999999889999999999999999999874 45679999999999999


Q ss_pred             CCccccCCCccc-------------ccCCccccceEEEcCEEEEeCCCCCC
Q 015956          288 DGKCEKMPSTQL-------------RNVKIKSLPCFEQEGMIWIWPGDEPP  325 (397)
Q Consensus       288 dG~~~~vP~~~~-------------~~~~L~~ypV~e~~G~IwV~l~~~~p  325 (397)
                      +|+|+.+|..+.             ...+|++|+|.+++|+|||+++++++
T Consensus        98 ~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~~~~  148 (150)
T cd03545          98 KGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSDEVE  148 (150)
T ss_pred             CCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCCCCC
Confidence            999999996421             23579999999999999999987654

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe

>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H)

Probab=99.94  E-value=1.8e-27  Score=208.20  Aligned_cols=108  Identities=22%  Similarity=0.406  Sum_probs=96.9

Q ss_pred             eEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cceeEEccccCeEEcCCCccccCC
Q 015956          218 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP  295 (397)
Q Consensus       218 W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v-~~~~L~CPyHGW~Fd~dG~~~~vP  295 (397)
                      |++||+++||+ +|++.++.+++.+|+|+|+.+|+++||.|+|||||++|+.|.. +++.|+||||||+||++|+|+.+|
T Consensus         1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~p   80 (129)
T cd03539           1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGVP   80 (129)
T ss_pred             CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeecc
Confidence            99999999998 5999999999999999999999999999999999999998764 446899999999999999999999


Q ss_pred             Cccc-----------------ccCCccccceEEEcCEEEEeCCCCCC
Q 015956          296 STQL-----------------RNVKIKSLPCFEQEGMIWIWPGDEPP  325 (397)
Q Consensus       296 ~~~~-----------------~~~~L~~ypV~e~~G~IwV~l~~~~p  325 (397)
                      ..+.                 ...+|++++|++++|+|||+++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~  127 (129)
T cd03539          81 FRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDVE  127 (129)
T ss_pred             ccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCCC
Confidence            7522                 13579999999999999999987654

S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.

>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO)

Probab=99.94  E-value=2.4e-27  Score=207.20  Aligned_cols=115  Identities=23%  Similarity=0.404  Sum_probs=101.0

Q ss_pred             chhcccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cceeEEccccCeEEcCC
Q 015956          211 NTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTD  288 (397)
Q Consensus       211 ~~~~~~~W~~Va~ssdL~~-G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v-~~~~L~CPyHGW~Fd~d  288 (397)
                      ..+|.+.|+.|++++||++ |++..+++++++|+|+|+.+|+++|+.|+|||||++|+.|.. +++.|+||||||+||.+
T Consensus         2 ~~i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~   81 (128)
T cd03472           2 ERVFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTA   81 (128)
T ss_pred             cchhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCC
Confidence            4578999999999999985 777788899999999999999999999999999999998864 44689999999999999


Q ss_pred             CccccCCCccc--------ccCCccccceEEEcCEEEEeCCCCCC
Q 015956          289 GKCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP  325 (397)
Q Consensus       289 G~~~~vP~~~~--------~~~~L~~ypV~e~~G~IwV~l~~~~p  325 (397)
                      |+|+.+|..+.        ....|++++|.+++|+|||++++++|
T Consensus        82 G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~~~  126 (128)
T cd03472          82 GNLVNVPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAEAP  126 (128)
T ss_pred             cCEEeccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCCCC
Confidence            99999998542        12468999999999999999988754

ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i

>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms

Probab=99.94  E-value=4.8e-27  Score=199.50  Aligned_cols=108  Identities=33%  Similarity=0.686  Sum_probs=99.4

Q ss_pred             eEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cceeEEccccCeEEcCCCccccCC
Q 015956          218 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP  295 (397)
Q Consensus       218 W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v-~~~~L~CPyHGW~Fd~dG~~~~vP  295 (397)
                      |++||.++||+ +|+.+.+.+.+++++|+|+.+|+++|+.|.|||+|++|+.|.+ .++.|+||||||+||.+|+|+.+|
T Consensus         1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~P   80 (118)
T cd03469           1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVP   80 (118)
T ss_pred             CEEeEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeCC
Confidence            99999999999 9999999999999999998899999999999999999999988 789999999999999999999999


Q ss_pred             Cccc------ccCCccccceEEEcCEEEEeCCCCCC
Q 015956          296 STQL------RNVKIKSLPCFEQEGMIWIWPGDEPP  325 (397)
Q Consensus       296 ~~~~------~~~~L~~ypV~e~~G~IwV~l~~~~p  325 (397)
                      ..+.      ...+|++|||++++|+|||+++++.+
T Consensus        81 ~~~~~~~~~~~~~~L~~~~v~~~~g~v~v~~~~~~~  116 (118)
T cd03469          81 REEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDAP  116 (118)
T ss_pred             cccccCCCCHHHCCCeEEEEEEECCEEEEEcCCCCC
Confidence            8642      23579999999999999999987543

These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i

>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.94  E-value=2.2e-26  Score=205.26  Aligned_cols=116  Identities=21%  Similarity=0.420  Sum_probs=100.9

Q ss_pred             cchhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCC-Cccc-ceeEEccccCeEEc
Q 015956          210 YNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHL-GSVN-EGRIQCPYHGWEYS  286 (397)
Q Consensus       210 ~~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~-G~v~-~~~L~CPyHGW~Fd  286 (397)
                      +..+|.+.|++|+++++|+ +|+++.++++|++|+|+|+.+|+++|+.|+|||||++|+. +.+. ++.|+||||||+||
T Consensus        15 ~~~i~~~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~g~v~A~~n~CpHrg~~L~~~~~g~~~~~i~CP~Hgw~Fd   94 (146)
T cd03538          15 MERLFGNAWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTDGSVHVLYNRCPHKGTKIVSDGCGNTGKFFRCPYHAWSFK   94 (146)
T ss_pred             HHHHhhcCCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCCCCEEEEeccCcCCCCEeecccccccCCEEECCCCCCEEC
Confidence            3457888999999999999 7999999999999999998899999999999999999964 4343 56899999999999


Q ss_pred             CCCccccCCCccc----------ccCCcccc-ceEEEcCEEEEeCCCCCC
Q 015956          287 TDGKCEKMPSTQL----------RNVKIKSL-PCFEQEGMIWIWPGDEPP  325 (397)
Q Consensus       287 ~dG~~~~vP~~~~----------~~~~L~~y-pV~e~~G~IwV~l~~~~p  325 (397)
                      .+|+|+.+|..+.          ...+|+++ .|++++|+|||++++++|
T Consensus        95 ~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~~~  144 (146)
T cd03538          95 TDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPSGP  144 (146)
T ss_pred             CCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCCCC
Confidence            9999999997542          13579999 689999999999987654

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.

>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.93  E-value=3.9e-26  Score=197.83  Aligned_cols=110  Identities=21%  Similarity=0.486  Sum_probs=96.0

Q ss_pred             cceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccc-eeEEccccCeEEcCCCcccc
Q 015956          216 NFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEK  293 (397)
Q Consensus       216 ~~W~~Va~ssdL~~-G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~-~~L~CPyHGW~Fd~dG~~~~  293 (397)
                      +.|++||+++||++ |+...+.+++.+++|+|+.+|+++|+.|+|||||++|+.|...+ +.|+||||||+||.+|+|+.
T Consensus         1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~~   80 (123)
T cd03535           1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLVG   80 (123)
T ss_pred             CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEee
Confidence            46999999999986 77888889999999999889999999999999999999987664 68999999999999999999


Q ss_pred             CCCccc--------ccCCccccce-EEEcCEEEEeCCCCCC
Q 015956          294 MPSTQL--------RNVKIKSLPC-FEQEGMIWIWPGDEPP  325 (397)
Q Consensus       294 vP~~~~--------~~~~L~~ypV-~e~~G~IwV~l~~~~p  325 (397)
                      +|..+.        ...+|+++|+ ++++|+|||++++++|
T Consensus        81 ~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~~  121 (123)
T cd03535          81 VPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPKAP  121 (123)
T ss_pred             CCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCCCC
Confidence            997542        1357999985 5589999999987644

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1

>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO)

Probab=99.93  E-value=5.9e-26  Score=196.67  Aligned_cols=109  Identities=18%  Similarity=0.363  Sum_probs=96.0

Q ss_pred             eEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccc-eeEEccccCeEEcCCCccccCC
Q 015956          218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMP  295 (397)
Q Consensus       218 W~~Va~ssdL~~-G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~-~~L~CPyHGW~Fd~dG~~~~vP  295 (397)
                      |+.||+++||++ |++..+.+++.+++|+|+.+|+++||.|+|||+|++|+.|...+ ..|+||||||+||.+|+++.+|
T Consensus         1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~p   80 (123)
T cd03536           1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGAP   80 (123)
T ss_pred             CEEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEECC
Confidence            999999999997 77888889999999999889999999999999999999876543 5799999999999999999999


Q ss_pred             Cccc---------ccCCccccceEEEcCEEEEeCCCCCCC
Q 015956          296 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPPT  326 (397)
Q Consensus       296 ~~~~---------~~~~L~~ypV~e~~G~IwV~l~~~~p~  326 (397)
                      ..+.         ...+|++|+|.+++|+|||++++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~~  120 (123)
T cd03536          81 VEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNIDGPS  120 (123)
T ss_pred             ccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCCCCC
Confidence            7532         136799999999999999999876543

DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.

>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO)

Probab=99.92  E-value=2.7e-25  Score=183.23  Aligned_cols=96  Identities=27%  Similarity=0.530  Sum_probs=90.7

Q ss_pred             eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccCCC
Q 015956          218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS  296 (397)
Q Consensus       218 W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~vP~  296 (397)
                      |++++.++||++|+++.+++.|.+++|+|. +|+++||.|+|||+|++|..|.+.++.|+||||||+||. +|+|+..|.
T Consensus         1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~-~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~   79 (98)
T cd03528           1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRV-DGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPA   79 (98)
T ss_pred             CeEEEEhhhcCCCCEEEEEECCeEEEEEEE-CCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCC
Confidence            999999999999999999999999999996 669999999999999999999888899999999999997 999999987


Q ss_pred             cccccCCccccceEEEcCEEEE
Q 015956          297 TQLRNVKIKSLPCFEQEGMIWI  318 (397)
Q Consensus       297 ~~~~~~~L~~ypV~e~~G~IwV  318 (397)
                      .    .+|++||+++++|.|||
T Consensus        80 ~----~~L~~~~v~~~~g~v~v   97 (98)
T cd03528          80 T----EPLKTYPVKVEDGDVYV   97 (98)
T ss_pred             C----CCcceEeEEEECCEEEE
Confidence            4    37999999999999998

The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in

>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer

Probab=99.92  E-value=7.6e-25  Score=184.40  Aligned_cols=103  Identities=21%  Similarity=0.374  Sum_probs=92.3

Q ss_pred             eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccCCC
Q 015956          218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS  296 (397)
Q Consensus       218 W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~vP~  296 (397)
                      |++|+.++||++|+++.+++.+.+++++|..+|+++|+.|+|||+|++|+.|..+++.|+||||||+||+ +|.+.. |.
T Consensus         1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~~   79 (108)
T cd03474           1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-PR   79 (108)
T ss_pred             CeEeeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-CC
Confidence            8999999999999999999989889888888999999999999999999999988889999999999997 666654 33


Q ss_pred             cccccCCccccceEEEcCEEEEeCCCCCC
Q 015956          297 TQLRNVKIKSLPCFEQEGMIWIWPGDEPP  325 (397)
Q Consensus       297 ~~~~~~~L~~ypV~e~~G~IwV~l~~~~p  325 (397)
                          ..+|++|||++++|.|||++..++|
T Consensus        80 ----~~~L~~~~v~v~~g~v~v~~~~~~~  104 (108)
T cd03474          80 ----DCRLARYPVKVEGGDILVDTEGVLP  104 (108)
T ss_pred             ----CCccceEeEEEECCEEEEeCCCcCc
Confidence                2479999999999999999976544

T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.

>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain

Probab=99.92  E-value=6e-25  Score=181.78  Aligned_cols=97  Identities=21%  Similarity=0.459  Sum_probs=89.3

Q ss_pred             eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccCCC
Q 015956          218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS  296 (397)
Q Consensus       218 W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~vP~  296 (397)
                      |++|+.++||++|+...+.+.|++++|+|..+|+++|+.|.|||+|++|+.|.+.++.|+||||||+||. +|.+.. |.
T Consensus         1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~-p~   79 (98)
T cd03530           1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PD   79 (98)
T ss_pred             CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCCC-CC
Confidence            8999999999999999999999999999987899999999999999999999998999999999999996 888764 33


Q ss_pred             cccccCCccccceEEEcCEEEEe
Q 015956          297 TQLRNVKIKSLPCFEQEGMIWIW  319 (397)
Q Consensus       297 ~~~~~~~L~~ypV~e~~G~IwV~  319 (397)
                      .    .+|++||+++++|.|||.
T Consensus        80 ~----~~l~~y~v~v~~g~v~v~   98 (98)
T cd03530          80 E----GCVRTFPVKVEDGRVYLG   98 (98)
T ss_pred             C----CccceEeEEEECCEEEEC
Confidence            2    379999999999999984

The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.

>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth

Probab=99.92  E-value=1.1e-24  Score=189.27  Aligned_cols=109  Identities=24%  Similarity=0.461  Sum_probs=94.1

Q ss_pred             eEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cceeEEccccCeEEcCCCccccCC
Q 015956          218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP  295 (397)
Q Consensus       218 W~~Va~ssdL~~-G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v-~~~~L~CPyHGW~Fd~dG~~~~vP  295 (397)
                      |+.||+.+||++ |+++.+++.+++++|+|+.+|+++|+.|.|||||++|+.|.. +++.|+||||||+||.||+|+.+|
T Consensus         1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~p   80 (123)
T cd03542           1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKVK   80 (123)
T ss_pred             CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEECC
Confidence            899999999995 788999999999999998899999999999999999998754 456999999999999999999998


Q ss_pred             Cccc--c--------cCCccccc-eEEEcCEEEEeCCCCCCC
Q 015956          296 STQL--R--------NVKIKSLP-CFEQEGMIWIWPGDEPPT  326 (397)
Q Consensus       296 ~~~~--~--------~~~L~~yp-V~e~~G~IwV~l~~~~p~  326 (397)
                      ....  .        ..+|.+++ ++.++|+||+++++++|+
T Consensus        81 ~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~~~  122 (123)
T cd03542          81 DPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNADVAP  122 (123)
T ss_pred             cccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCCCCC
Confidence            6321  1        24688886 566799999999877543

The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.

>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily

Probab=99.91  E-value=5.2e-24  Score=178.34  Aligned_cols=100  Identities=21%  Similarity=0.385  Sum_probs=93.1

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccCC
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP  295 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~vP  295 (397)
                      .|+.++..+||++|....+.+.|.+++|+|..+|+++|++|.|||+|++|+.|.+.++.|+||+|||+||. ||+|+..|
T Consensus         1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p   80 (101)
T TIGR02377         1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPP   80 (101)
T ss_pred             CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCC
Confidence            49999999999999999999999999999977899999999999999999999999999999999999995 99999988


Q ss_pred             CcccccCCccccceEEEcCEEEEeC
Q 015956          296 STQLRNVKIKSLPCFEQEGMIWIWP  320 (397)
Q Consensus       296 ~~~~~~~~L~~ypV~e~~G~IwV~l  320 (397)
                      ..    .+|++||+++++|.|||.+
T Consensus        81 ~~----~~l~~y~v~v~~g~v~V~~  101 (101)
T TIGR02377        81 VC----VNLKTYPVKVVDGAVYVDI  101 (101)
T ss_pred             cc----CCcceEeEEEECCEEEEeC
Confidence            74    3799999999999999853

This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].

>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium

Probab=99.90  E-value=7.5e-24  Score=177.48  Aligned_cols=97  Identities=23%  Similarity=0.297  Sum_probs=88.1

Q ss_pred             eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCC-CCCCccc----ceeEEccccCeEEc-CCCcc
Q 015956          218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACP-LHLGSVN----EGRIQCPYHGWEYS-TDGKC  291 (397)
Q Consensus       218 W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~-Ls~G~v~----~~~L~CPyHGW~Fd-~dG~~  291 (397)
                      |++||.++||++|+.+.+.+.|++++|+|..+|+++|+.|.|||+|++ |+.|.+.    ++.|+||||||+|| .+|+|
T Consensus         1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~   80 (103)
T cd03529           1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRC   80 (103)
T ss_pred             CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCc
Confidence            999999999999999999999999999998777999999999999997 7778653    34899999999999 59999


Q ss_pred             ccCCCcccccCCccccceEEEcCEEEEe
Q 015956          292 EKMPSTQLRNVKIKSLPCFEQEGMIWIW  319 (397)
Q Consensus       292 ~~vP~~~~~~~~L~~ypV~e~~G~IwV~  319 (397)
                      +..|..     +|++|||++++|.|||.
T Consensus        81 ~~~p~~-----~l~~y~v~~~~g~v~v~  103 (103)
T cd03529          81 LEDEDV-----SVATFPVRVEDGEVYVK  103 (103)
T ss_pred             cCCCCc-----cEeeEeEEEECCEEEEC
Confidence            998863     79999999999999983

Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.

>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit

Probab=99.90  E-value=7.8e-24  Score=177.59  Aligned_cols=99  Identities=23%  Similarity=0.412  Sum_probs=90.2

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCC-CCCCCCCccccee----EEccccCeEEcC-CCc
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHR-ACPLHLGSVNEGR----IQCPYHGWEYST-DGK  290 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHR-Ga~Ls~G~v~~~~----L~CPyHGW~Fd~-dG~  290 (397)
                      .|++|+.++||++|..+.+.+.|.+++|+|..+|+++|+.|.|||+ +.+|+.|.+.++.    |+||||||+||. +|+
T Consensus         1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~   80 (105)
T TIGR02378         1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGR   80 (105)
T ss_pred             CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCcc
Confidence            4999999999999999999999999999997788999999999999 8999998776555    999999999996 999


Q ss_pred             cccCCCcccccCCccccceEEEcCEEEEeC
Q 015956          291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWP  320 (397)
Q Consensus       291 ~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l  320 (397)
                      |+..|.     .+|++||+++++|.|||.+
T Consensus        81 ~~~~~~-----~~L~~y~v~v~~g~v~v~~  105 (105)
T TIGR02378        81 CLEDDS-----GSVRTYEVRVEDGRVYVAL  105 (105)
T ss_pred             ccCCCC-----ccEeeEeEEEECCEEEEeC
Confidence            998775     3799999999999999964

This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.

>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional

Probab=99.89  E-value=2.2e-23  Score=175.82  Aligned_cols=101  Identities=20%  Similarity=0.355  Sum_probs=91.5

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccc-eeEEccccCeEEcC-CCccccC
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYST-DGKCEKM  294 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~-~~L~CPyHGW~Fd~-dG~~~~v  294 (397)
                      .|+.||..+||++|..+.+.+. .+++|+| .+|+++|++|.|||+|++|+.|.+++ +.|+||||||+||. +|+|+..
T Consensus         2 ~~~~v~~~~~l~~g~~~~~~~~-~~i~v~~-~~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~   79 (106)
T PRK09965          2 NRIYACPVADLPEGEALRVDTS-PVIALFN-VGGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCL   79 (106)
T ss_pred             CcEEeeeHHHcCCCCeEEEeCC-CeEEEEE-ECCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCC
Confidence            4999999999999999888877 8899999 58999999999999999999998887 79999999999996 9999988


Q ss_pred             CCcccccCCccccceEEEcCEEEEeCCCC
Q 015956          295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE  323 (397)
Q Consensus       295 P~~~~~~~~L~~ypV~e~~G~IwV~l~~~  323 (397)
                      |..    .+|++|++++++|.|||.+..+
T Consensus        80 p~~----~~l~~y~v~v~~g~v~v~~~~~  104 (106)
T PRK09965         80 PAT----DPLRTYPVHVEGGDIFIDLPEA  104 (106)
T ss_pred             CCC----CCcceEeEEEECCEEEEEccCC
Confidence            763    4799999999999999988654

>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox)

Probab=99.89  E-value=2.1e-23  Score=171.89  Aligned_cols=93  Identities=26%  Similarity=0.489  Sum_probs=87.1

Q ss_pred             EeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccCCCcc
Q 015956          220 PVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQ  298 (397)
Q Consensus       220 ~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~vP~~~  298 (397)
                      .|+.++||++|++..+.+.|.+++|+|. +|+++|++|+|||+|++|..|.+.++.|+||||||+||. +|+|+..|.. 
T Consensus         2 ~v~~~~~l~~g~~~~~~~~~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~-   79 (95)
T cd03478           2 VVCRLSDLGDGEMKEVDVGDGKVLLVRQ-GGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPAL-   79 (95)
T ss_pred             ceeehhhCCCCCEEEEEeCCcEEEEEEE-CCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCcc-
Confidence            4789999999999999999999999996 899999999999999999999988999999999999996 9999999874 


Q ss_pred             cccCCccccceEEEcCEEE
Q 015956          299 LRNVKIKSLPCFEQEGMIW  317 (397)
Q Consensus       299 ~~~~~L~~ypV~e~~G~Iw  317 (397)
                         ..|++||+++++|.||
T Consensus        80 ---~~l~~~~v~~~~g~i~   95 (95)
T cd03478          80 ---DSLPCYEVEVEDGRVY   95 (95)
T ss_pred             ---CCcceEEEEEECCEEC
Confidence               3699999999999997

The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.

>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A

Probab=99.86  E-value=8.6e-22  Score=166.72  Aligned_cols=98  Identities=27%  Similarity=0.601  Sum_probs=91.5

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCC-CCCCCCCCcccce----eEEccccCeEEcC-CCc
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH-RACPLHLGSVNEG----RIQCPYHGWEYST-DGK  290 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPH-RGa~Ls~G~v~~~----~L~CPyHGW~Fd~-dG~  290 (397)
                      .|+.||..+||++|..+.+.+.|++|+|||..+|+++|++|.||| ++.+|+.|.+.+.    .+.||+|+|.||+ +|+
T Consensus         1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~   80 (104)
T PF13806_consen    1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGE   80 (104)
T ss_dssp             SEEEEEETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTE
T ss_pred             CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcC
Confidence            599999999999999999999999999999779999999999999 8999999998765    9999999999996 999


Q ss_pred             cccCCCcccccCCccccceEEEcCEEEEe
Q 015956          291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIW  319 (397)
Q Consensus       291 ~~~vP~~~~~~~~L~~ypV~e~~G~IwV~  319 (397)
                      |+..|..     ++++|||++++|.|||.
T Consensus        81 ~~~~~~~-----~l~~ypvrv~~g~V~V~  104 (104)
T PF13806_consen   81 CLEDPDV-----SLRTYPVRVEDGQVYVE  104 (104)
T ss_dssp             ESSECSE-----BSBEEEEEECTTEEEEE
T ss_pred             cCCCCCC-----cEEeEEEEEECCEEEEC
Confidence            9987663     79999999999999984

>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types

Probab=99.86  E-value=6.3e-22  Score=162.62  Aligned_cols=93  Identities=31%  Similarity=0.646  Sum_probs=79.7

Q ss_pred             ceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc--ccceeEEccccCeEEcCC-Cccc
Q 015956          217 FWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYSTD-GKCE  292 (397)
Q Consensus       217 ~W~~Va~ssdL~~-G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~--v~~~~L~CPyHGW~Fd~d-G~~~  292 (397)
                      .|++|+.++||++ |+...+.+.+.. ++++..+|+++|+.|.|||+|++|..|.  .+++.|+||||||+||.+ |+|+
T Consensus         1 ~W~~v~~~~el~~~~~~~~~~~~~~~-v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~   79 (97)
T PF00355_consen    1 QWVPVCRSSELPEPGDVKRVDVGGKL-VLVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECV   79 (97)
T ss_dssp             SEEEEEEGGGSHSTTEEEEEEETTEE-EEEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEE
T ss_pred             CEEEeeEHHHCCCCCCEEEEEcCCcE-EEEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEe
Confidence            5999999999998 888899995545 5555689999999999999999999994  456799999999999975 9999


Q ss_pred             cCCCcccccCCccccceEEEcC
Q 015956          293 KMPSTQLRNVKIKSLPCFEQEG  314 (397)
Q Consensus       293 ~vP~~~~~~~~L~~ypV~e~~G  314 (397)
                      ..|...    +++.|||+++++
T Consensus        80 ~~p~~~----~l~~~~v~ve~~   97 (97)
T PF00355_consen   80 GGPAPR----PLPLYPVKVEGD   97 (97)
T ss_dssp             ESTTCS----BSTEEEEEEETT
T ss_pred             cCCCCC----CcCCCCeEEeCC
Confidence            999953    699999999864

Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....

>PRK09511 nirD nitrite reductase small subunit; Provisional

Probab=99.86  E-value=1.6e-21  Score=165.83  Aligned_cols=98  Identities=19%  Similarity=0.221  Sum_probs=88.0

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEc-CCCcEEEEeecCCCCCCC-CCCCcccc---e-eEEccccCeEEcC-CC
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACP-LHLGSVNE---G-RIQCPYHGWEYST-DG  289 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~-~dG~i~A~~N~CPHRGa~-Ls~G~v~~---~-~L~CPyHGW~Fd~-dG  289 (397)
                      .|+.||..+||++|+...+.+.|++|+|+|. .+|+++|++|.|||.|++ |+.|.+.+   + .++||+|||+||+ +|
T Consensus         3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG   82 (108)
T PRK09511          3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG   82 (108)
T ss_pred             cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence            4999999999999999999999999999994 589999999999999985 99998742   2 5999999999995 99


Q ss_pred             ccccCCCcccccCCccccceEEEcCEEEEe
Q 015956          290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIW  319 (397)
Q Consensus       290 ~~~~vP~~~~~~~~L~~ypV~e~~G~IwV~  319 (397)
                      +|+..|..     +|++|||++++|.|||.
T Consensus        83 ~~~~~~~~-----~l~typV~ve~g~V~v~  107 (108)
T PRK09511         83 LCMEDEQF-----SVKHYDARVKDGVVQLR  107 (108)
T ss_pred             ccCCCCCc-----cEeeEeEEEECCEEEEe
Confidence            99987653     79999999999999984

>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes

Probab=99.85  E-value=4.2e-21  Score=158.37  Aligned_cols=95  Identities=25%  Similarity=0.484  Sum_probs=87.8

Q ss_pred             eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccCCC
Q 015956          218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS  296 (397)
Q Consensus       218 W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~vP~  296 (397)
                      |++++..++|++|+...+.+.+.+++|+|..+|+++|++|.|||+|++|..+...++.|+||+|||.||. ||+|+..|.
T Consensus         1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~   80 (98)
T cd03467           1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPA   80 (98)
T ss_pred             CEEeeeccccCCCceEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCC
Confidence            8999999999999999999999999999988889999999999999999999888899999999999998 999999987


Q ss_pred             cccccCCccccceEEE-cCEE
Q 015956          297 TQLRNVKIKSLPCFEQ-EGMI  316 (397)
Q Consensus       297 ~~~~~~~L~~ypV~e~-~G~I  316 (397)
                      .    ..|++||+++. ++.|
T Consensus        81 ~----~~l~~~~v~~~~~~~~   97 (98)
T cd03467          81 P----RPLPKYPVKVEGDGVV   97 (98)
T ss_pred             C----CCcCEEEEEEeCCceE
Confidence            3    47999999999 4444

The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.

>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]

Probab=99.84  E-value=1.1e-20  Score=160.48  Aligned_cols=101  Identities=23%  Similarity=0.432  Sum_probs=89.9

Q ss_pred             cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccce-eEEccccCeEEcC-CCcccc
Q 015956          216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG-RIQCPYHGWEYST-DGKCEK  293 (397)
Q Consensus       216 ~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~-~L~CPyHGW~Fd~-dG~~~~  293 (397)
                      ..|+.+|..+||+++..+.+.+.+..+++++..+|+++|+.|+|||.|++|+.|.+.+. .++||+|+|.||. +|+|+.
T Consensus         3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~   82 (106)
T COG2146           3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLE   82 (106)
T ss_pred             CceEEEEehHhcCCCCceEEEecCCEEEEEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceec
Confidence            46999999999999999999984425666666899999999999999999999999886 5999999999995 999999


Q ss_pred             CCCcccccCCccccceEEEcCEEEEeC
Q 015956          294 MPSTQLRNVKIKSLPCFEQEGMIWIWP  320 (397)
Q Consensus       294 vP~~~~~~~~L~~ypV~e~~G~IwV~l  320 (397)
                      .|...    .|++||+++++|.|||.+
T Consensus        83 ~p~~~----~l~~y~vrve~g~v~v~~  105 (106)
T COG2146          83 PPAGK----TLKTYPVRVEGGRVFVDL  105 (106)
T ss_pred             CCCCC----ceeEEeEEEECCEEEEec
Confidence            99853    199999999999999975

>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain

Probab=99.82  E-value=3.1e-20  Score=153.54  Aligned_cols=88  Identities=24%  Similarity=0.393  Sum_probs=79.5

Q ss_pred             eeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCCCcccc
Q 015956          221 VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR  300 (397)
Q Consensus       221 Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~  300 (397)
                      ++.++||++|+...+.+.|++++|+|+.+|+++|+.|.|||+|++|+.|.. ++.|+||||||+||.+|+++..|..   
T Consensus         2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd~~G~~~~~Pa~---   77 (91)
T cd03477           2 ITDIEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFSYDGEVIEGPAV---   77 (91)
T ss_pred             ccchhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEECCCCcEeeCCCC---
Confidence            578899999999999999999999998899999999999999999998865 5699999999999999999999974   


Q ss_pred             cCCccccceEEEc
Q 015956          301 NVKIKSLPCFEQE  313 (397)
Q Consensus       301 ~~~L~~ypV~e~~  313 (397)
                       ..|++|++.-.+
T Consensus        78 -~~l~~y~v~~~~   89 (91)
T cd03477          78 -SGLKPADDAPID   89 (91)
T ss_pred             -CCCCeeEeeccc
Confidence             378999987543

The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.

>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate

Probab=99.78  E-value=8.1e-19  Score=153.48  Aligned_cols=95  Identities=21%  Similarity=0.326  Sum_probs=85.5

Q ss_pred             EeeecCCCCCCCceeEeeCC--eeEEEEEcC---------CCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-
Q 015956          220 PVAFSTDLKDDTMVPFDCFE--EPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-  287 (397)
Q Consensus       220 ~Va~ssdL~~G~~~~v~i~G--~~IVV~R~~---------dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-  287 (397)
                      .||..++|++|+.+.+.+.+  .+++|+|..         +|+++|++|+|||.||+|+.+. +++.|+||+|||+||. 
T Consensus         5 ~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl~   83 (126)
T cd03476           5 KVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDPA   83 (126)
T ss_pred             EEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeCC
Confidence            78999999999999999877  889999964         7999999999999999999987 6789999999999996 


Q ss_pred             -CCccccCCCcccccCCccccceEEE--cCEEEEe
Q 015956          288 -DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW  319 (397)
Q Consensus       288 -dG~~~~vP~~~~~~~~L~~ypV~e~--~G~IwV~  319 (397)
                       +|+++..|..    ..|+.||++++  +|.|||-
T Consensus        84 tgG~~~~gPa~----~~L~~ypv~ve~~~g~V~~~  114 (126)
T cd03476          84 RGGQMVSGQAT----QNLPQIVLEYDEASGDIYAV  114 (126)
T ss_pred             CCCeEEcCCCC----CCCCeEEEEEECCCCEEEEE
Confidence             5799988863    48999999999  9999985

It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.

>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer

Probab=99.73  E-value=1.5e-17  Score=145.56  Aligned_cols=90  Identities=18%  Similarity=0.377  Sum_probs=73.4

Q ss_pred             CCCCceeEe-e-CCeeEEEEEcCCCcE--EEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCCCcccccCC
Q 015956          228 KDDTMVPFD-C-FEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVK  303 (397)
Q Consensus       228 ~~G~~~~v~-i-~G~~IVV~R~~dG~i--~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~  303 (397)
                      .+|++..+. . .+..|+|++ .+|++  +|++|.|||+||+|..+.. ++.|+||+|||+||.+|+++..|..    .+
T Consensus        21 ~~~~~~~~~~~~~~~~Ilv~~-~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd~tG~~~~gPa~----~~   94 (126)
T cd03471          21 NPGDRSLVQGLKGDPTYLIVE-EDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDATGKVVRGPAP----LS   94 (126)
T ss_pred             CCCCeEEEEEecCCeEEEEEe-CCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEECCCCCEecCCCC----CC
Confidence            367766666 3 445555555 78977  8999999999999998754 5799999999999999999988863    48


Q ss_pred             ccccceEEEcCEEEEeCCCC
Q 015956          304 IKSLPCFEQEGMIWIWPGDE  323 (397)
Q Consensus       304 L~~ypV~e~~G~IwV~l~~~  323 (397)
                      |+.|+|++++|.|||.+..+
T Consensus        95 L~~y~V~vedg~I~V~~~~~  114 (126)
T cd03471          95 LALVHATVDDDKVVLSPWTE  114 (126)
T ss_pred             CceEeEEEECCEEEEEECcc
Confidence            99999999999999986543

The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.

>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit

Probab=99.70  E-value=5.2e-17  Score=142.76  Aligned_cols=94  Identities=21%  Similarity=0.355  Sum_probs=81.9

Q ss_pred             EeeecCCCCCCCceeEeeCC--eeEEEEEc---------CCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCC
Q 015956          220 PVAFSTDLKDDTMVPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD  288 (397)
Q Consensus       220 ~Va~ssdL~~G~~~~v~i~G--~~IVV~R~---------~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~d  288 (397)
                      .||..+||++|+++.+.+.+  .+++++|.         .+|+++|++|.|||.|++|..+. ++..|.||+|||+||.+
T Consensus         8 ~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl~   86 (129)
T TIGR02694         8 RVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDPE   86 (129)
T ss_pred             EEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECCC
Confidence            78999999999999999865  47888883         58999999999999999999875 67899999999999974


Q ss_pred             --CccccCCCcccccCCccccceEEE-cCEEEE
Q 015956          289 --GKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI  318 (397)
Q Consensus       289 --G~~~~vP~~~~~~~~L~~ypV~e~-~G~IwV  318 (397)
                        |+++..|..    .+|++||+++. +|.||.
T Consensus        87 tgG~~~~gP~~----~~L~~y~v~v~~~G~V~~  115 (129)
T TIGR02694        87 KGGQQVWGQAT----QNLPQIVLRVADNGDIFA  115 (129)
T ss_pred             CCCcEECCCCC----CCCCeeEEEEECCCeEEE
Confidence              699987763    47999999997 599984

This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.

>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer

Probab=99.67  E-value=2.2e-16  Score=138.14  Aligned_cols=92  Identities=21%  Similarity=0.324  Sum_probs=81.6

Q ss_pred             ecCCCCCCCceeEeeCCeeEEEEEcC----------------------------CCcEEEEeecCCCCCCCCCCCcccce
Q 015956          223 FSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------DGIPGCVQNTCAHRACPLHLGSVNEG  274 (397)
Q Consensus       223 ~ssdL~~G~~~~v~i~G~~IVV~R~~----------------------------dG~i~A~~N~CPHRGa~Ls~G~v~~~  274 (397)
                      ..++|++|+.+.+.+.|.+|+|+|..                            +|+++|+.+.|||.||.+..+.+.++
T Consensus         5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~~~~   84 (126)
T cd03470           5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAGDYG   84 (126)
T ss_pred             EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccCCCC
Confidence            56889999999999999999999942                            67999999999999999987766778


Q ss_pred             eEEccccCeEEcCCCccccCCCcccccCCccccceEEEc-CEEEE
Q 015956          275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE-GMIWI  318 (397)
Q Consensus       275 ~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e~~-G~IwV  318 (397)
                      .|.||||||+||.+|+.+..|..    .+|+.||+++.+ +.|+|
T Consensus        85 ~~~CPcHgs~Fdl~G~~~~gPa~----~~L~~~p~~~~~~~~l~i  125 (126)
T cd03470          85 GFFCPCHGSHYDASGRIRKGPAP----LNLEVPPYKFLSDTTIVI  125 (126)
T ss_pred             EEEecCcCCEECCCCeEecCCCC----CCCCeeeEEEecCCEEEe
Confidence            99999999999999999988874    589999999876 67765

The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.

>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer

Probab=99.66  E-value=1.7e-16  Score=135.10  Aligned_cols=72  Identities=15%  Similarity=0.330  Sum_probs=66.2

Q ss_pred             cCCCCCCCceeEee-CCeeEEEEEcCCCcEEEEeecCCCCCCCCCC--CcccceeEEccccCeEEcC-CCccccCCC
Q 015956          224 STDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHL--GSVNEGRIQCPYHGWEYST-DGKCEKMPS  296 (397)
Q Consensus       224 ssdL~~G~~~~v~i-~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~--G~v~~~~L~CPyHGW~Fd~-dG~~~~vP~  296 (397)
                      ..+|++|..+.+.+ .|..|+|+| .+|+++|++|.|||+|++|+.  |.++++.|+||+|||+||. +|+++..|.
T Consensus        14 l~eL~~G~~~~v~v~~g~~I~V~~-~~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~   89 (107)
T cd03473          14 VANLKEGINFFRNKEDGKKYIIYK-SKSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPD   89 (107)
T ss_pred             HhcCCCCceEEEEecCCcEEEEEE-ECCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCc
Confidence            48999999999999 999999999 589999999999999999998  4588899999999999995 999988776

CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.

>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional

Probab=99.56  E-value=1.4e-14  Score=133.78  Aligned_cols=88  Identities=19%  Similarity=0.423  Sum_probs=74.0

Q ss_pred             CCCCCceeEe-eCCee-EEEEEcCCCcE--EEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCCCcccccC
Q 015956          227 LKDDTMVPFD-CFEEP-WVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNV  302 (397)
Q Consensus       227 L~~G~~~~v~-i~G~~-IVV~R~~dG~i--~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~  302 (397)
                      .++|+...+. +.|.+ +++++ .+|++  +|+++.|||.||+|..+..+ +.+.||+|||+||.+|+.+..|..    .
T Consensus        72 ~~~g~~~~v~~~~g~~~~lv~~-~~g~~~~~a~~~~CtH~gc~l~~~~~~-~~~~CP~Hgs~Fd~tG~~~~gPa~----~  145 (178)
T PRK13474         72 HPAGDRSLVQGLKGDPTYLVVE-EDGTIASYGINAVCTHLGCVVPWNSGE-NKFQCPCHGSQYDATGKVVRGPAP----L  145 (178)
T ss_pred             CCCCCcEEEEEcCCCeEEEEEe-CCCEEEEEEecCCCCCCCCccccccCC-CEEEecCcCCEECCCCCCccCCCC----C
Confidence            3678777776 56767 55555 68999  67799999999999988744 699999999999999999988874    4


Q ss_pred             CccccceEEEcCEEEEeC
Q 015956          303 KIKSLPCFEQEGMIWIWP  320 (397)
Q Consensus       303 ~L~~ypV~e~~G~IwV~l  320 (397)
                      .|+.|++++++|.|||.+
T Consensus       146 ~L~~y~v~v~~g~v~v~~  163 (178)
T PRK13474        146 SLALVHVTVEDDKVLFSP  163 (178)
T ss_pred             CCCeEeEEEECCEEEEEE
Confidence            899999999999999975

>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit

Probab=99.44  E-value=4.4e-13  Score=123.40  Aligned_cols=93  Identities=20%  Similarity=0.271  Sum_probs=78.5

Q ss_pred             eEEeeecCCCCCCCceeEeeCCeeEEEEEcC----------------------------------CCcEEEEeecCCCCC
Q 015956          218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------DGIPGCVQNTCAHRA  263 (397)
Q Consensus       218 W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~----------------------------------dG~i~A~~N~CPHRG  263 (397)
                      |..| ..++|++|+.+.+.+.|.+++|+|..                                  +++++|+.+.|||.|
T Consensus        41 ~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~G  119 (174)
T TIGR01416        41 PTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHLG  119 (174)
T ss_pred             cEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCCC
Confidence            5677 79999999999999999999999851                                  489999999999999


Q ss_pred             CCCCC-Cccc-ceeEEccccCeEEcCCCccccCCCcccccCCccccceEEEcCE
Q 015956          264 CPLHL-GSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGM  315 (397)
Q Consensus       264 a~Ls~-G~v~-~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e~~G~  315 (397)
                      |.+.. +... .+.+.|||||++||.+|+.+..|..    ..|+.||++..++.
T Consensus       120 c~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa~----~~L~~~~~~~~~~~  169 (174)
T TIGR01416       120 CIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPAP----LNLPVPPYKFLSDT  169 (174)
T ss_pred             CccccccCCCCCCEEEeCCCCCEECCCCcEecCCCC----CCCCCCCEEEcCCC
Confidence            87753 3333 4689999999999999999988874    48999999987653

Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.

>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer

Probab=99.16  E-value=1.3e-10  Score=106.64  Aligned_cols=68  Identities=15%  Similarity=0.199  Sum_probs=54.3

Q ss_pred             CCCcEEEEeecCCCCCCCCCC---------------CcccceeEEccccCeEEcC-CC-ccccCCCcccccCCccccceE
Q 015956          248 KDGIPGCVQNTCAHRACPLHL---------------GSVNEGRIQCPYHGWEYST-DG-KCEKMPSTQLRNVKIKSLPCF  310 (397)
Q Consensus       248 ~dG~i~A~~N~CPHRGa~Ls~---------------G~v~~~~L~CPyHGW~Fd~-dG-~~~~vP~~~~~~~~L~~ypV~  310 (397)
                      .+|+++|+++.|||+||+|..               |...++.|.||+|||+||. +| ..+..|..    ..|..|+++
T Consensus        73 p~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~----~pLp~~~L~  148 (171)
T cd03475          73 PNKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAP----RPLPAVILE  148 (171)
T ss_pred             CCCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCC----CCcCEeEEE
Confidence            378999999999999998752               4456789999999999997 55 45555653    479999998


Q ss_pred             EEc--CEEEEe
Q 015956          311 EQE--GMIWIW  319 (397)
Q Consensus       311 e~~--G~IwV~  319 (397)
                      +++  |.||.-
T Consensus       149 ~d~~~d~iyAv  159 (171)
T cd03475         149 YDSSTDDLYAV  159 (171)
T ss_pred             EeCCCCcEEEE
Confidence            884  778874

SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.

>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]

Probab=98.83  E-value=5.5e-09  Score=95.85  Aligned_cols=75  Identities=24%  Similarity=0.397  Sum_probs=59.5

Q ss_pred             eeEEEEEcCCC-----cEEEEeecCCCCCCCCCC-CcccceeEEccccCeEEcCCCccccCCCcccccCCccccceEEEc
Q 015956          240 EPWVIFRGKDG-----IPGCVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE  313 (397)
Q Consensus       240 ~~IVV~R~~dG-----~i~A~~N~CPHRGa~Ls~-G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e~~  313 (397)
                      .....++..++     ++.|+...|+|.||...+ +....+.|.|||||.+||.+|+.+..|+.    ..|..++++..+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA~----~~L~~~~~~~~~  159 (177)
T COG0723          84 PKGGVTRDGDGGVGNKEIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPAP----RPLPIPPLEYDS  159 (177)
T ss_pred             ccccceecccCCCCCccEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCCC----CCcCCceEEEeC
Confidence            44444454444     455999999999999998 55567999999999999999999988884    578999998887


Q ss_pred             CEEEE
Q 015956          314 GMIWI  318 (397)
Q Consensus       314 G~IwV  318 (397)
                      +.+++
T Consensus       160 d~~~~  164 (177)
T COG0723         160 DKLYL  164 (177)
T ss_pred             CceEE
Confidence            74444

>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2

Probab=98.47  E-value=3e-07  Score=91.63  Aligned_cols=69  Identities=14%  Similarity=0.230  Sum_probs=52.7

Q ss_pred             cCCCcEEEEeecCCCCCCCCCCC----------------------------ccc---ceeEEccccCeEEcCC--Ccccc
Q 015956          247 GKDGIPGCVQNTCAHRACPLHLG----------------------------SVN---EGRIQCPYHGWEYSTD--GKCEK  293 (397)
Q Consensus       247 ~~dG~i~A~~N~CPHRGa~Ls~G----------------------------~v~---~~~L~CPyHGW~Fd~d--G~~~~  293 (397)
                      +.++.|.||+..|+|+||++..-                            .-.   .+.+.|||||.+||.+  |+.+.
T Consensus       173 Gp~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~  252 (321)
T TIGR03171       173 GPNKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLT  252 (321)
T ss_pred             CCCCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeC
Confidence            34688999999999999988321                            001   1489999999999963  57888


Q ss_pred             CCCcccccCCccccceEEE--cCEEEEe
Q 015956          294 MPSTQLRNVKIKSLPCFEQ--EGMIWIW  319 (397)
Q Consensus       294 vP~~~~~~~~L~~ypV~e~--~G~IwV~  319 (397)
                      .|...    .|..++++..  +|.||+-
T Consensus       253 GPA~r----pLp~i~l~~d~~~~~l~Av  276 (321)
T TIGR03171       253 GPTVR----PLPAVILEWDSSTDYLYAI  276 (321)
T ss_pred             CCCCC----CCCcceEEEeCCCCeEEEE
Confidence            88853    7888888886  4677774

This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.

>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]

Probab=98.37  E-value=4.3e-07  Score=84.90  Aligned_cols=75  Identities=27%  Similarity=0.392  Sum_probs=63.0

Q ss_pred             ecCCCCCCCceeEeeCCeeEEEE--------------------------EcCCCcEEEEeecCCCCCCCCCCCcccceeE
Q 015956          223 FSTDLKDDTMVPFDCFEEPWVIF--------------------------RGKDGIPGCVQNTCAHRACPLHLGSVNEGRI  276 (397)
Q Consensus       223 ~ssdL~~G~~~~v~i~G~~IVV~--------------------------R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L  276 (397)
                      ..++||+|.-.+++-.|.|+++-                          |.++-++.++..+|+|.||-.....++.+.+
T Consensus        91 ~l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~~ewl~~igVCThLGCVp~~~AGd~gg~  170 (210)
T KOG1671|consen   91 KLSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKKPEWLVVIGVCTHLGCVPIANAGDYGGY  170 (210)
T ss_pred             eeecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccCcceEEEEeeeccccccccccccccCce
Confidence            46778888888888888887773                          3445567999999999999988777777899


Q ss_pred             EccccCeEEcCCCccccCCCc
Q 015956          277 QCPYHGWEYSTDGKCEKMPST  297 (397)
Q Consensus       277 ~CPyHGW~Fd~dG~~~~vP~~  297 (397)
                      -|||||.+||..|+....|+.
T Consensus       171 ~CPCHGSHYdasGRIrkGPAP  191 (210)
T KOG1671|consen  171 YCPCHGSHYDASGRIRKGPAP  191 (210)
T ss_pred             ecccccccccccCceecCCCC
Confidence            999999999999999999873

>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases

Probab=97.89  E-value=4.8e-06  Score=77.67  Aligned_cols=38  Identities=16%  Similarity=0.237  Sum_probs=32.8

Q ss_pred             CceEeEEEEEEEecChhhHHHhhcCCCCCCccCccccc
Q 015956          337 GFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA  374 (397)
Q Consensus       337 g~~~~~~~~~~~~~NWKl~vEN~lD~yH~p~vH~~tf~  374 (397)
                      .+.+.....+.++||||+++||++|+||++++|+++..
T Consensus         7 ~~~~~~~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~   44 (205)
T cd08884           7 NLKVAHRISYEVAANWKLVVENYRECYHCAGVHPELAR   44 (205)
T ss_pred             hcEEccceEEEEccCceehhHhCcccccCccccHHHHh
Confidence            45555667889999999999999999999999998764

C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an

>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []

Probab=97.82  E-value=2.3e-06  Score=76.58  Aligned_cols=35  Identities=29%  Similarity=0.306  Sum_probs=28.6

Q ss_pred             EEEEecChhhHHHhhcCCCCCCccCcccccCCCCC
Q 015956          345 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV  379 (397)
Q Consensus       345 ~~~~~~NWKl~vEN~lD~yH~p~vH~~tf~~g~~v  379 (397)
                      .++++||||+++||++|+||++++|+++++.....
T Consensus        11 ~~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~~~~   45 (209)
T PF00848_consen   11 RYEVDCNWKLAVENFLEGYHVPFLHPSTLGFFDPS   45 (209)
T ss_dssp             HHHESS-HHHHHHHHHHCTTHHHHTHHHHHHHSCT
T ss_pred             EEEecccceEHHHhCcccccccccccchhhhhhcc
Confidence            34689999999999999999999999987654433

The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....

>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases

Probab=97.37  E-value=4.6e-05  Score=71.91  Aligned_cols=35  Identities=23%  Similarity=0.217  Sum_probs=30.8

Q ss_pred             EEEEEEecChhhHHHhhc-CCCCCCccCcccccCCC
Q 015956          343 EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTFAKGW  377 (397)
Q Consensus       343 ~~~~~~~~NWKl~vEN~l-D~yH~p~vH~~tf~~g~  377 (397)
                      ...+.++||||+++|||+ |+||++++|.+++.-+.
T Consensus         8 ~~~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~~~~   43 (206)
T cd08881           8 PQKWVIKANWKLAAENFAGDGYHTGTTHASALEAGL   43 (206)
T ss_pred             cEEEEecCcceehhhccccccccchhhhHHHHHhhC
Confidence            467789999999999999 99999999998886544

C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th

>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium

Probab=95.52  E-value=0.013  Score=56.81  Aligned_cols=45  Identities=24%  Similarity=0.420  Sum_probs=32.0

Q ss_pred             CCceEeEEEEEEEecChhhHHHhhcCCCCCCccCcccc---cCCCCCcce
Q 015956          336 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF---AKGWSVPRF  382 (397)
Q Consensus       336 ~g~~~~~~~~~~~~~NWKl~vEN~lD~yH~p~vH~~tf---~~g~~vp~~  382 (397)
                      .+..+.+ ....+.|||.+.+||.+|..|+ |+|+.+.   ++.|+.|-.
T Consensus        21 ~~~~~~g-~~~~~~~NWR~a~ENGfD~~H~-fiHk~s~~v~~~D~~lplG   68 (240)
T PF11723_consen   21 DDIVIFG-MHREINANWRLAAENGFDPGHI-FIHKDSIWVHANDWALPLG   68 (240)
T ss_dssp             TTEEEEE-EEEEESS-HHHHHHHHT-TTGG-GGGTT-HHHHHTTBEE-SE
T ss_pred             CcceEEe-eeeeccccchhhhhhCcCcceE-EEecCcceEEecceecccc
Confidence            3455443 5667899999999999999998 9999543   577877766

The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=95.32  E-value=0.011  Score=62.45  Aligned_cols=38  Identities=34%  Similarity=0.804  Sum_probs=34.2

Q ss_pred             CCCCCCCCCcccceeEEccccCeEEcC-CCccccCCCcc
Q 015956          261 HRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQ  298 (397)
Q Consensus       261 HRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~vP~~~  298 (397)
                      |.|+||..|....++++|||||..|+. +|....-|...
T Consensus         1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~   39 (478)
T KOG1336|consen    1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLD   39 (478)
T ss_pred             CCCcchhhccccCCcccccccceeecCCcCchhhCcCcc
Confidence            899999999888899999999999995 89988888753

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=80.65  E-value=8.4  Score=35.77  Aligned_cols=89  Identities=18%  Similarity=0.339  Sum_probs=57.0

Q ss_pred             ceeehhhHHHHhhhccc---cc----------ccccchh--hH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHH
Q 015956           70 KFLDVNQALEVARYDIQ---YC----------DWRARQD--VL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQED  133 (397)
Q Consensus        70 ~~~~~~~~~~~~~~~~~---~~----------~~~~~~d--~~-~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~  133 (397)
                      ++--||+|.++++.++.   |+          ++ +.+|  +| .+|++|+++.|+-++-  +-..+..+++++...+++
T Consensus        53 ~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~~~~~~-~~~d~~fLme~me~rE~le~~~~~~--d~~~l~~~~~~i~~~~~~  129 (173)
T PRK00294         53 RSASLNEAYQTLKSPPRRARYLLALSGHEVPLEV-TVHDPEFLLQQMQLREELEELQDEA--DLAGVATFKRRLKAAQDE  129 (173)
T ss_pred             HHHHHHHHHHHhCChhhhHHHHHHhcCCCCCccc-CCCCHHHHHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHHHHHH
Confidence            57789999999876652   22          22 3333  33 8999999999886652  334466677777777777


Q ss_pred             HHHHHHHhhhh---hhhHHHHhhhhHHHHHH
Q 015956          134 LAQAHRQVHIS---EARVATALDKLAYMEAL  161 (397)
Q Consensus       134 ~~~ah~~~h~~---~~Rv~~ald~~~~~~~~  161 (397)
                      +.++-.+.=+.   -....+.+.|+++|.++
T Consensus       130 l~~~~~~~~~~~~~~~~A~~~v~kl~f~~kl  160 (173)
T PRK00294        130 LNESFAACWDDAARREEAERLMRRMQFLDKL  160 (173)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            66655542111   13555777788887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	397
3gke_A	349	Crystal Structure Of Dicamba Monooxygenase Length =		4e-16
3gkq_A	389	Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase Fr		3e-09
3gcf_A	394	Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase Fr		1e-07
1ww9_A	392	Crystal Structure Of The Terminal Oxygenase Compone		2e-06
3n0q_A	409	Crystal Structure Of A Putative Aromatic-Ring Hydro		3e-06
3vca_A	412	Quaternary Ammonium Oxidative Demethylation: X-Ray		4e-06
2zyl_A	386	Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxyl		4e-06

>pdb|3GKE|A Chain A, Crystal Structure Of Dicamba Monooxygenase Length = 349

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 212 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV 271
           T ++N W+  A   +L +  +      + P  ++R  DG+   + + C HR  PL  G +
Sbjct: 3   TFVRNAWYVAALPEELSEKPL-GRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGIL 61
Query: 272 NEGRIQCPYHGWEYSTDGKCEKMP---STQLRNVKIKSLPCFEQEGMIWIWPGDEPPTAT 328
             G +QCPYHG E+   G+C   P     +  ++ ++S P  E++ +IWIWPGD  P   
Sbjct: 62  VNGHLQCPYHGLEFDGGGQCVHNPHGNGARPASLNVRSFPVVERDALIWIWPGD--PALA 119
Query: 329 IPCLLPPSGFEI 340
            P  +P  G  +
Sbjct: 120 DPGAIPDFGCRV 131

>pdb|3GKQ|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From Novosphingobium Sp. Ka1 Length = 389

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 8/119 (6%)
Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL--HLGSV 271
            +N W+PV  S ++ + + VP     E  V+    DG+   + + C HR   L   +   
Sbjct: 28  FRNHWYPVRLSAEVAEASPVPVQLLGEK-VLLNRVDGVVHAIADRCLHRGVTLSDKVECY 86
Query: 272 NEGRIQCPYHGWEYSTD-GKCEKM----PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325
           ++  I C YHGW Y  D GK   +     S Q+    +K+ P  E++G+++++ GD+ P
Sbjct: 87  SKATISCWYHGWTYRWDNGKLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEP 145

>pdb|3GCF|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From Nocardioides Aromaticivorans Ic177 Length = 394

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 69/171 (40%), Gaps = 21/171 (12%)
Query: 175 TDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVP 234
           T Q  + P+ +  S  +   K PR      G          N W P AF  +L +   V 
Sbjct: 3   TSQEISDPAQATSSAQV---KWPRYLEATLG--------FDNHWHPAAFDHELAEGEFVA 51
Query: 235 FDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYS-TDGKC 291
                E  ++ R K G    + + CAHR  P     +    G + C YHGW Y   DG+ 
Sbjct: 52  VTMLGEKVLLTRAK-GEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYDLDDGRL 110
Query: 292 EKM----PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGF 338
             +     S  +  + IK  P    +G+++++ GDE P A    L  P GF
Sbjct: 111 VDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEPHALSEDL--PPGF 159

>pdb|1WW9|A Chain A, Crystal Structure Of The Terminal Oxygenase Component Of Carbazole 1, 9a-dioxygenase, A Non-heme Iron Oxygenase System Catalyzing The Novel Angular Dioxygenation For Carbazole And Dioxin Length = 392

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SV 271
            +N W+PV FS ++ +          E  ++ R  DG   C+++ C HR   L +     
Sbjct: 25  FRNHWYPVMFSKEINEGEPKTLKLLGENLLVNR-IDGKLYCLKDRCLHRGVQLSVKVECK 83
Query: 272 NEGRIQCPYHGWEYS-TDGK-CEKM---PSTQLRNVKIKSLPCFEQEGMIWIW--PGDEP 324
            +  I C YH W Y   DG  C+ +    S Q+   K+K+ P  E +G ++I+   GD P
Sbjct: 84  TKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPP 143
Query: 325 PTATIPCLLPPSGFEIHAEIV 345
           P A      PP+  +   EI+
Sbjct: 144 PLARD---TPPNFLDDDMEIL 161

>pdb|3N0Q|A Chain A, Crystal Structure Of A Putative Aromatic-Ring Hydroxylating Dioxygenase (Tm1040_3219) From Silicibacter Sp. Tm1040 At 1 Resolution Length = 409

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 243 VIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKC----EKMP 295
           +I RG D +     N C HR    C    G  N  ++ CPYH W Y  DG+     +  P
Sbjct: 68  IIVRGADNVIRAFHNACRHRGSVICKAKKG--NNPKLVCPYHQWTYELDGRLLWARDXGP 125
Query: 296 STQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325
             +     +K++ C E  G+I+I   DE P
Sbjct: 126 DFEPSRHGLKTVHCRELAGLIYICLADEAP 155

>pdb|3VCA|A Chain A, Quaternary Ammonium Oxidative Demethylation: X-Ray Crystallographic, Resonance Raman And Uv-Visible Spectroscopic Analysis Of A Rieske- Type Demethylase Length = 412

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 243 VIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKC----EKMP 295
           VI R +DG      N+C HR    C    G V   ++ CPYH W Y  DGK     +  P
Sbjct: 70  VIVRSRDGEVRAFHNSCRHRGSLICKARQGQV--AKLVCPYHQWTYELDGKLIWANDMGP 127
Query: 296 STQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLPPSGFEIH 341
                   +K +     +G+I+I   D PP       L     E+H
Sbjct: 128 DFDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQLARPYLEVH 173

>pdb|2ZYL|A Chain A, Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxylase (Ksha) From M. Tuberculosis Length = 386

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 212 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV 271
           TR    W  +  + D  +      + F    V+F    G    +   C H    L  G+V
Sbjct: 20  TRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTV 79
Query: 272 NEGRIQCPYHGWEYSTDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIW---PGDEP-P 325
               + CP+H W +  DG+C+ +P  +   R  + +S     + G++++W    G+ P P
Sbjct: 80  KGDEVACPFHDWRWGGDGRCKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDP 139
Query: 326 TATIP 330
              IP
Sbjct: 140 AVRIP 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	397
3gke_A	349	DDMC; rieske cluster, non-heme mononuclear iron, o	3e-58
3gkq_A	389	Terminal oxygenase component of carbazole 1,9A- di	2e-50
2de6_A	392	Terminal oxygenase component of carbazole; electro	2e-49
1z01_A	446	2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen	3e-49
2zyl_A	386	Possible oxidoreductase; KSHA, cholesterol, rieske	1e-48
3gcf_A	394	Terminal oxygenase component of carbazole 1,9A- di	3e-48
1vm9_A	111	Toluene-4-monooxygenase system protein C; structur	1e-15
3dqy_A	106	Toluene 1,2-dioxygenase system ferredoxin subunit;	3e-15
2i7f_A	108	Ferredoxin component of dioxygenase; rieske ferred	2e-14
2b1x_A	470	Naphthalene dioxygenase large subunit; rieske non-	2e-14
2gbw_A	454	Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy	4e-14
2qpz_A	103	Naphthalene 1,2-dioxygenase system ferredoxin subu	4e-14
2bmo_A	447	Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni	5e-14
3vca_A	412	Ring-hydroxylating dioxygenase; rieske-type, monon	5e-14
3n0q_A	409	Putative aromatic-ring hydroxylating dioxygenase;	1e-13
2de6_D	115	Ferredoxin component of carbazole; electron transf	1e-13
3gzx_A	457	Biphenyl dioxygenase subunit alpha; rieskie, non-h	1e-13
3gce_A	121	Ferredoxin component of carbazole 1,9A- dioxygenas	6e-13
3d89_A	157	Rieske domain-containing protein; CAsp target, rie	2e-12
1uli_A	460	Biphenyl dioxygenase large subunit; alpha3 BETA3 h	2e-12
1fqt_A	112	Rieske-type ferredoxin of biphenyl dioxygenase; 2F	3e-12
2jo6_A	113	Nitrite reductase [NAD(P)H] small subunit; all bet	3e-10
2jza_A	130	Nitrite reductase [NAD(P)H] small subunit; ISP dom	3e-10
3c0d_A	119	Putative nitrite reductase NADPH (small subunit) o	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08

>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* Length = 349

 Score =  192 bits (490), Expect = 3e-58
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 11/169 (6%)

Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
           ++N W+  A   +L +   +     + P  ++R  DG+   + + C HR  PL  G +  
Sbjct: 5   VRNAWYVAALPEELSE-KPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVN 63

Query: 274 GRIQCPYHGWEYSTDGKCEKMPSTQ---LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIP 330
           G +QCPYHG E+   G+C   P        ++ ++S P  E++ +IWIWPGD       P
Sbjct: 64  GHLQCPYHGLEFDGGGQCVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALAD--P 121

Query: 331 CLLPPSGFEIHAE-----IVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374
             +P  G  +            +   + LL+DNL+DL HA + H +   
Sbjct: 122 GAIPDFGCRVDPAYRTVGGYGHVDCNYKLLVDNLMDLGHAQYVHRANAQ 170

>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} Length = 389

 Score =  173 bits (439), Expect = 2e-50
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 13/189 (6%)

Query: 196 LPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCV 255
           +  +      P        +N W+PV  S ++ + + VP     E  ++ R  DG+   +
Sbjct: 10  IAERRTRAWAPYIDAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAI 68

Query: 256 QNTCAHRACPLHLG--SVNEGRIQCPYHGWEYSTD-GKCEKMPS----TQLRNVKIKSLP 308
            + C HR   L       ++  I C YHGW Y  D GK   + +     Q+    +K+ P
Sbjct: 69  ADRCLHRGVTLSDKVECYSKATISCWYHGWTYRWDNGKLVDILTNPTSVQIGRHALKTYP 128

Query: 309 CFEQEGMIWIWPGDEPPTATIPCLLP---PSGFEIHAEIVMELPIEHGLLLDNLLDLAHA 365
             E++G+++++ GD+ P      + P    +   +H +    +     + ++N  D  H 
Sbjct: 129 VREEKGLVFLFVGDQEPHDLAEDVPPGFLDADLAVHGQ-HRVVDANWRMGVENGFDAGHV 187

Query: 366 PFTHTSTFA 374
            F H S+  
Sbjct: 188 -FIHKSSIL 195

>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* Length = 392

 Score =  170 bits (432), Expect = 2e-49
 Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 205 GPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC 264
            P        +N W+PV FS ++ +          E  ++ R  DG   C+++ C HR  
Sbjct: 16  APYVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNR-IDGKLYCLKDRCLHRGV 74

Query: 265 PLHLG--SVNEGRIQCPYHGWEYS-TDGKCEKMPS----TQLRNVKIKSLPCFEQEGMIW 317
            L +      +  I C YH W Y   DG    + +     Q+   K+K+ P  E +G ++
Sbjct: 75  QLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVF 134

Query: 318 IWPGDEPPTA----TIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF 373
           I+ GD  P      T P  L     EI       +     L ++N  D +H  + H  + 
Sbjct: 135 IYLGDGDPPPLARDTPPNFLDD-DMEILG-KNQIIKSNWRLAVENGFDPSHI-YIHKDSI 191

>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* Length = 446

 Score =  171 bits (435), Expect = 3e-49
 Identities = 40/218 (18%), Positives = 74/218 (33%), Gaps = 35/218 (16%)

Query: 197 PRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQ 256
             K+ +   P +       N W+P  F+ +L++D +        P V+ R  +G    ++
Sbjct: 23  NAKTQSQYQPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALK 81

Query: 257 NTCAHRACPLHLGSV--NEGRIQCPYHGWEYSTD-GKCEKMPS----TQLRNVKIKSLPC 309
           + C HR   L        +  I C YHG+ +  + GK   + +      +    + + P 
Sbjct: 82  DQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPV 141

Query: 310 FEQEGMIWIWPGD-EPPTATIPCLLPPSGFEIHAE------------------------I 344
            E  GMI+++  + + P   +P L     F                             +
Sbjct: 142 HEVNGMIFVFVREDDFPDEDVPPLAHDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVHGM 201

Query: 345 VMELPIEHGLLLDNLLDLAHAPFTHTSTF--AKGWSVP 380
                    +  +N  D AH      +T   A  W +P
Sbjct: 202 HRTGFGNWRIACENGFDNAHILVHKDNTIVHAMDWVLP 239

>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} Length = 386

 Score =  168 bits (427), Expect = 1e-48
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 9/177 (5%)

Query: 206 PVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACP 265
                 TR    W  +  + D  +      + F    V+F    G    +   C H    
Sbjct: 14  DAGALPTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGD 73

Query: 266 LHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDE 323
           L  G+V    + CP+H W +  DG+C+ +P  +   R  + +S     + G++++W   E
Sbjct: 74  LSEGTVKGDEVACPFHDWRWGGDGRCKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHE 133

Query: 324 --PPTA-----TIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF 373
             PP        IP        +     ++        ++DN+ D+AH  + H    
Sbjct: 134 GNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVTDMAHFFYIHFGLP 190

>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} Length = 394

 Score =  167 bits (425), Expect = 3e-48
 Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 11/169 (6%)

Query: 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-- 271
             N W P AF  +L +   V      E  ++ R   G    + + CAHR  P     +  
Sbjct: 31  FDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTRA-KGEVKAIADGCAHRGVPFSKEPLCF 89

Query: 272 NEGRIQCPYHGWEYS-TDGKCEKMP----STQLRNVKIKSLPCFEQEGMIWIWPGDEPPT 326
             G + C YHGW Y   DG+   +     S  +  + IK  P    +G+++++ GDE P 
Sbjct: 90  KAGTVSCWYHGWTYDLDDGRLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEPH 149

Query: 327 ATIPCLLPP--SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF 373
           A    L P           I   +     L ++N  D  H  F H ++ 
Sbjct: 150 ALSEDLPPGFLDEDTHLLGIRRTVQSNWRLGVENGFDTTHI-FMHRNSP 197

>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A Length = 111

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 11/115 (9%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFE-EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRI 276
           +  +    D+    M  F+  +    +I   ++      Q  C H+   L  GS   G I
Sbjct: 2   FEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVI 61

Query: 277 QCPYHGWEYS-TDGKCEKMPSTQLR--NVKIKSLPCFEQEGMIWIWPGDEPPTAT 328
            C  H W ++   G         L    V++       +   I++      P   
Sbjct: 62  TCRAHLWTFNDGTGHGINPDDAALAEYPVEV-------KGDDIYVSTKGILPNKA 109

>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} Length = 106

 Score = 70.3 bits (173), Expect = 3e-15
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 12/105 (11%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           W  +    DL    M  ++   EP ++          VQ+TC H    L  G ++   ++
Sbjct: 2   WTYILRQGDLPPGEMQRYEGGPEPVMVCNVDGEF-FAVQDTCTHGDWALSDGYLDGDIVE 60

Query: 278 CPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFE---QEGMIWI 318
           C  H  ++    GK + +P+        K +  F    +   + +
Sbjct: 61  CTLHFGKFCVRTGKVKALPAC-------KPIKVFPIKVEGDEVHV 98

>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} Length = 108

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
              +     +KD   V     + P +     DG      N C H    L  G  +   I+
Sbjct: 4   KLRLCQVASVKDGEPVAVYQEKMPALAVYNVDGEVFVTDNLCTHGNAMLTDGYQDGTIIE 63

Query: 278 CPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTA 327
           CP+HG  +    G  +  P      + IK+ P   ++G + I   D+P  +
Sbjct: 64  CPFHGGSFDIATGAAKAFPCQ----IPIKTYPVTIEDGWVCI---DQPKES 107

>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A Length = 470

 Score = 73.4 bits (180), Expect = 2e-14
 Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 30/191 (15%)

Query: 218 WFPVAFSTDLKD--DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVN 272
           W  +A  +++ +  D +V     E+ +++ R + G      N C HR    C   +G  N
Sbjct: 46  WVFLAHESEIPERGDYVV-RYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMG--N 102

Query: 273 EGRIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLPCFEQ-EGMIWIWPGDE 323
               +CPYHGW YS  G    +P+ +          +  ++ +P     +G+I+      
Sbjct: 103 TSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPH 162

Query: 324 PP---------TATIPCLLPPSGFEIHAEIVMELPIEHG---LLLDN-LLDLAHAPFTHT 370
                         +  +L  S   +      +  +      L  DN + D  H   TH 
Sbjct: 163 ADSLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHR 222

Query: 371 STFAKGWSVPR 381
           S    G + P 
Sbjct: 223 SMVELGLAPPD 233

>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A Length = 454

 Score = 72.6 bits (178), Expect = 4e-14
 Identities = 30/160 (18%), Positives = 53/160 (33%), Gaps = 26/160 (16%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
           E+  ++    DG      N+C+HR    C    G  N     C YHGW +  DG    +P
Sbjct: 60  EDKVILSHQSDGTFRAFINSCSHRGNQICHADSG--NAKAFVCNYHGWVFGQDGSLVDVP 117

Query: 296 STQ--------LRNVKIKSLPCFEQEGMIWIWPGDEPP---------TATIPCLLPPSGF 338
                       + +  KS+     +G I+     E P            +  +   +G 
Sbjct: 118 LESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAPSLEDYLGEFRYYLDTIWEGAGG 177

Query: 339 EIHAEIVMELPIEHG---LLLDN-LLDLAHAPFTHTSTFA 374
            +         +      +  +N + D  H  +TH +  +
Sbjct: 178 GMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS 217

>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Length = 103

 Score = 66.8 bits (164), Expect = 4e-14
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 12/105 (11%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           W      +D+ +  ++      +   ++  +  I     N C H +  +  G +    I+
Sbjct: 4   WIEAVALSDILEGDVLGVTVEGKELALYEVEGEI-YATDNLCTHGSARMSDGYLEGREIE 62

Query: 278 CPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFE---QEGMIWI 318
           CP H   +    GK    P T       +++  +    +   + I
Sbjct: 63  CPLHQGRFDVCTGKALCAPVT-------QNIKTYPVKIENLRVMI 100

>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* Length = 447

 Score = 72.2 bits (177), Expect = 5e-14
 Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 28/167 (16%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
            +  ++ R  DG      N C HR         G  N     C YHGW Y ++G+ + +P
Sbjct: 59  VDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAG--NAKGFVCGYHGWGYGSNGELQSVP 116

Query: 296 STQ--------LRNVKIKSLPCFEQ-EGMIWIWPGDEPPT------ATIPCLLPPSGFEI 340
             +         + + +K +P  E   G I+     E P            L P   +  
Sbjct: 117 FEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGDAAWYLEPTFKYSG 176

Query: 341 HAEIV---MELPIEHG---LLLDNLL-DLAHAPFTHTSTFAKGWSVP 380
             E+V    ++ +         +N + D  H  +TH +    G SV 
Sbjct: 177 GLELVGPPGKVVV-KANWKSFAENFVGDGYHVGWTHAAALRAGQSVF 222

>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A Length = 412

 Score = 72.1 bits (177), Expect = 5e-14
 Identities = 32/185 (17%), Positives = 53/185 (28%), Gaps = 42/185 (22%)

Query: 218 WFPVAFSTDLKD--DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEG 274
           W        L                 VI R +DG      N+C HR   +         
Sbjct: 44  WLYAVPVCQLAKAGSY-TTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQGQVA 102

Query: 275 RIQCPYHGWEYSTDGKCEKMPSTQ---------LRNVKIKSLPCFEQEGMIWI-WPGDEP 324
           ++ CPYH W Y  DGK                 L+ V +++L     +G+I+I      P
Sbjct: 103 KLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNL-----DGLIYICLSDTPP 157

Query: 325 PTATIPCLLPPSGFEIHAEIVMELPIEHG---------------LLLDNLLDLAHAPFTH 369
              T          ++    +    ++                 L+ +N  +  H    H
Sbjct: 158 DFQTF--------AQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNH 209

Query: 370 TSTFA 374
            +   
Sbjct: 210 PALCR 214

>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} Length = 409

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 32/185 (17%), Positives = 53/185 (28%), Gaps = 42/185 (22%)

Query: 218 WFPVAFSTDLKD--DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPL-HLGSVNEG 274
           W     + +L       V         +I RG D +     N C HR   +      N  
Sbjct: 42  WLFAIPACELDKPGSY-VTHQVGNYNVIIVRGADNVIRAFHNACRHRGSVICKAKKGNNP 100

Query: 275 RIQCPYHGWEYSTDGKCEKMPSTQ---------LRNVKIKSLPCFEQEGMIWI-WPGDEP 324
           ++ CPYH W Y  DG+                 L+ V  + L      G+I+I    + P
Sbjct: 101 KLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCREL-----AGLIYICLADEAP 155

Query: 325 PTATIPCLLPPSGFEIHAEIVMELPIEHG---------------LLLDNLLDLAHAPFTH 369
                         E+    +    + +                L+ +N  +  H    H
Sbjct: 156 DFERF--------AEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNH 207

Query: 370 TSTFA 374
            +   
Sbjct: 208 PALCR 212

>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* Length = 115

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWV-IFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRI 276
           W  V  ++D++  T+   +      + ++R  D      ++TC H    L  G+++   I
Sbjct: 5   WLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQF-YATEDTCTHGIASLSEGTLDGDVI 63

Query: 277 QCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIP 330
           +CP+HG  ++   G     P T    V +       +EG +++    +       
Sbjct: 64  ECPFHGGAFNVCTGMPASSPCT----VPLGVFEVEVKEGEVYVAGEKKLEHHHHH 114

>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* Length = 457

 Score = 71.1 bits (174), Expect = 1e-13
 Identities = 27/172 (15%), Positives = 45/172 (26%), Gaps = 31/172 (18%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
           E+P ++ R KD       N C HR         G  N     C YHGW Y   G    +P
Sbjct: 80  EDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSDGG--NAKAFTCTYHGWAYDIAGNLVNVP 137

Query: 296 STQ--------------LRNVKIKSLPCFEQEGMIWIWPGDEPP---------TATIPCL 332
             +                +           +G+++     E P            +  +
Sbjct: 138 FEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPDLKTYLSDAMPYMDVM 197

Query: 333 LPPSGFE---IHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPR 381
           L  +      I       +P       +      +   T +        +P 
Sbjct: 198 LDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLAGLPP 249

>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Length = 121

 Score = 63.9 bits (156), Expect = 6e-13
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE--GR 275
              VA    LK      FD   +  ++ R  D +   + N C+H    L +G  +     
Sbjct: 11  PVRVATLDQLKPGVPTAFDVDGDEVMVVRDGDSV-YAISNLCSHAEAYLDMGVFHAESLE 69

Query: 276 IQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWP--GDEPP 325
           I+CP H   +    G    +P        +++         I + P   D   
Sbjct: 70  IECPLHVGRFDVRTGAPTALPCVL----PVRAYDVVVDGTEILVAPKEADHHH 118

>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} Length = 157

 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 16/125 (12%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV----NE 273
              V    D++    +     +   VIF  K      +   C H   PLHLG +     +
Sbjct: 17  SVCVGREEDIRKSERMTAVVHDREVVIFYHKGEY-HAMDIRCYHSGGPLHLGEIEDFNGQ 75

Query: 274 GRIQCPYHGWEYS-TDGKCEKMPST----------QLRNVKIKSLPCFEQEGMIWIWPGD 322
             I CP+H ++ +   G+                   + VK +        G I++    
Sbjct: 76  SCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSK 135

Query: 323 EPPTA 327
           EP   
Sbjct: 136 EPFKC 140

>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A Length = 460

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRA---CPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295
           E+P ++ R K+G      N C HR    C    G  N     C YHGW Y T G    +P
Sbjct: 78  EDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGG--NAKSFTCSYHGWAYDTGGNLVSVP 135

Query: 296 STQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPP 325
             +         +           +G+I+     + P
Sbjct: 136 FEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAP 172

>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* Length = 112

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 13/106 (12%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGR-I 276
           +  V    D+ +   +  +       IF     +    Q+ C H    L  G   EG  +
Sbjct: 6   FTRVCDRRDVPEGEALKVESGGTSVAIFNVDGEL-FATQDRCTHGDWSLSDGGYLEGDVV 64

Query: 277 QCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFE---QEGMIWI 318
           +C  H  ++    GK +  P         ++L  F    ++  + +
Sbjct: 65  ECSLHMGKFCVRTGKVKSPPPC-------EALKIFPIRIEDNDVLV 103

>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 Length = 113

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 12/111 (10%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFR-GKDGIPGCVQNTCAH-RACPLHLGSVNEGR 275
           W  +    D+  +T V     +E   IFR         + N      +  L  G + E +
Sbjct: 7   WKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQ 66

Query: 276 ----IQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 321
               +  P     +  +DG C +          +K      ++G++ +  G
Sbjct: 67  GELWVASPLKKQRFRLSDGLCMEDEQ-----FSVKHYEARVKDGVVQLRGG 112

>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 Length = 130

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 24/131 (18%), Positives = 38/131 (29%), Gaps = 12/131 (9%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFR-GKDGIPGCVQNTCAH-RACPLHLGSVNEGR 275
           W  V    D+   T V     ++   +FR   D     + N     +A  L  G V E +
Sbjct: 4   WTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQ 63

Query: 276 ----IQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTATIP 330
               +  P     +   DG C +  +       + +       G + I   D        
Sbjct: 64  DDLWVASPLKKQHFRLYDGFCLEDGA-----YSVAAYDTQVTNGNVQISIADSDVAVDNS 118

Query: 331 CLLPPSGFEIH 341
             LP      H
Sbjct: 119 QPLPLEHHHHH 129

>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 Length = 119

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 11/107 (10%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH-RACPLHLGSV----N 272
              +    DL            E   +F   D     VQ+     +A  +  G V     
Sbjct: 6   KVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDING 65

Query: 273 EGRIQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 318
           E  +  P +   +S   G+C +  +       +K+      +  +  
Sbjct: 66  EMCVASPLYKQHFSLKSGQCLEDEA-----HCLKTWRVTVDDNQVCY 107

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 8e-08
 Identities = 65/428 (15%), Positives = 125/428 (29%), Gaps = 116/428 (27%)

Query: 22  INTKKSVRGGFRVFALF---GEE------GGLVDK-----KSAWSTLF-DVEDPRSKVPQ 66
           I +K +V G  R+F       EE        ++        S   T             +
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 67  CKGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSI------ 120
            + +  + NQ    A+Y++     R +         + K+ + L  L R  K++      
Sbjct: 115 QRDRLYNDNQVF--AKYNV----SRLQP--------YLKLRQALLEL-RPAKNVLIDGVL 159

Query: 121 GTMKKELAELQEDLAQAHR-------QVH-ISEARVATALDKLAYMEALVNDRLLQDRHT 172
           G+ K  +A    D+  +++       ++  ++     +    L  ++ L+    +    T
Sbjct: 160 GSGKTWVAL---DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL--YQIDPNWT 214

Query: 173 SGTDQTCASP----STSKQSLDIVKGKLPRKSL----NVSGP--VQPYN--------TRL 214
           S +D +        S   +   ++K K     L    NV        +N        TR 
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 215 KNFWFPVAFSTDLKDDTMVPFD----CFEEP--------WVIFRGKDGIPGCVQNTCAHR 262
           K     V         T +  D                 ++  R +D +P          
Sbjct: 275 KQ----VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LP--------RE 321

Query: 263 AC---PLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIW-- 317
                P  L  + E         W+      C+K+  T +    +  L   E   M    
Sbjct: 322 VLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKL--TTIIESSLNVLEPAEYRKMFDRL 378

Query: 318 -IWPGDEP-PTATIPCLLPPSGFEIHAEIVMEL---------PIE-----HGLLLDNLLD 361
            ++P     PT  +  +           +V +L         P E       + L+  + 
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 362 LAHAPFTH 369
           L +    H
Sbjct: 439 LENEYALH 446

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	397
3gke_A	349	DDMC; rieske cluster, non-heme mononuclear iron, o	100.0
3n0q_A	409	Putative aromatic-ring hydroxylating dioxygenase;	100.0
2zyl_A	386	Possible oxidoreductase; KSHA, cholesterol, rieske	100.0
3vca_A	412	Ring-hydroxylating dioxygenase; rieske-type, monon	100.0
3gzx_A	457	Biphenyl dioxygenase subunit alpha; rieskie, non-h	100.0
2de6_A	392	Terminal oxygenase component of carbazole; electro	100.0
2bmo_A	447	Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni	100.0
3gkq_A	389	Terminal oxygenase component of carbazole 1,9A- di	100.0
3gcf_A	394	Terminal oxygenase component of carbazole 1,9A- di	100.0
2gbw_A	454	Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy	100.0
1z01_A	446	2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen	100.0
2b1x_A	470	Naphthalene dioxygenase large subunit; rieske non-	100.0
1uli_A	460	Biphenyl dioxygenase large subunit; alpha3 BETA3 h	99.97
2qpz_A	103	Naphthalene 1,2-dioxygenase system ferredoxin subu	99.94
2i7f_A	108	Ferredoxin component of dioxygenase; rieske ferred	99.94
1vm9_A	111	Toluene-4-monooxygenase system protein C; structur	99.94
1fqt_A	112	Rieske-type ferredoxin of biphenyl dioxygenase; 2F	99.94
3dqy_A	106	Toluene 1,2-dioxygenase system ferredoxin subunit;	99.94
2de6_D	115	Ferredoxin component of carbazole; electron transf	99.94
2jo6_A	113	Nitrite reductase [NAD(P)H] small subunit; all bet	99.93
3c0d_A	119	Putative nitrite reductase NADPH (small subunit) o	99.93
2jza_A	130	Nitrite reductase [NAD(P)H] small subunit; ISP dom	99.93
3gce_A	121	Ferredoxin component of carbazole 1,9A- dioxygenas	99.93
3d89_A	157	Rieske domain-containing protein; CAsp target, rie	99.92
4aiv_A	119	Probable nitrite reductase [NAD(P)H] small subuni;	99.92
4aay_B	175	AROB; oxidoreductase, rieske, iron sulfur, molybdo	99.9
1rie_A	129	Rieske iron-sulfur protein; oxidoreductase, cytoch	99.86
1rfs_A	139	Rieske protein; iron-sulfur protein, electron tran	99.85
1g8k_B	133	Arsenite oxidase; molybdopterin, [3Fe-4S] cluster,	99.84
2qjy_C	187	Ubiquinol-cytochrome C reductase iron-sulfur SUBU;	99.8
3azc_A	133	Cytochrome B6-F complex iron-sulfur subunit; riesk	99.66
3cx5_E	185	Cytochrome B-C1 complex subunit rieske, mitochondr	99.78
1pp9_E	196	Ubiquinol-cytochrome C reductase iron-sulfur SUBU	99.76
2nwf_A	141	Ubiquinol-cytochrome C reductase iron-sulfur SUBU;	99.76
1nyk_A	165	Rieske iron-sulfur protein; beta barrel, iron sulf	99.75
1vf5_D	179	Rieske iron-sulfur protein; photosynthesis, membra	99.72
1jm1_A	204	Rieske iron-sulfur protein SOXF; electron transpor	99.64

>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*

Probab=100.00  E-value=3.5e-37  Score=306.62  Aligned_cols=166  Identities=29%  Similarity=0.630  Sum_probs=142.6

Q ss_pred             chhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCc
Q 015956          211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK  290 (397)
Q Consensus       211 ~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~  290 (397)
                      ...+++.|++||+++|| +|+++.++++|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+
T Consensus         2 ~~~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G~   80 (349)
T 3gke_A            2 ATFVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGGQ   80 (349)
T ss_dssp             CCCCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTCC
T ss_pred             CcccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCCC
Confidence            45678999999999999 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCC-ccc--ccCCccccceEEEcCEEEEeCCCCC-CC-CCCCCCC--CCCCceEeEEEEEEEecChhhHHHhhcCCC
Q 015956          291 CEKMPS-TQL--RNVKIKSLPCFEQEGMIWIWPGDEP-PT-ATIPCLL--PPSGFEIHAEIVMELPIEHGLLLDNLLDLA  363 (397)
Q Consensus       291 ~~~vP~-~~~--~~~~L~~ypV~e~~G~IwV~l~~~~-p~-~~lp~l~--~~~g~~~~~~~~~~~~~NWKl~vEN~lD~y  363 (397)
                      |+.+|. ...  ...+|++|||.+++|+|||++++++ +. ..+|++.  +..++.+. ...++++||||+++||++|+|
T Consensus        81 ~~~~P~~~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~  159 (349)
T 3gke_A           81 CVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVDPAYRTV-GGYGHVDCNYKLLVDNLMDLG  159 (349)
T ss_dssp             EEECCSTTCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGCTTSEEE-EEEEEESSCHHHHHHHHHCGG
T ss_pred             ccccCccccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCCCCCEEE-eEEEEEecCHHhHHHhccccc
Confidence            999995 221  2468999999999999999998764 21 1245442  22456654 456789999999999999999


Q ss_pred             CCCccCcccccCCCC
Q 015956          364 HAPFTHTSTFAKGWS  378 (397)
Q Consensus       364 H~p~vH~~tf~~g~~  378 (397)
                      |++++|+++++....
T Consensus       160 H~~~~H~~~~~~~~~  174 (349)
T 3gke_A          160 HAQYVHRANAQTDAF  174 (349)
T ss_dssp             GHHHHTHHHHCCTTG
T ss_pred             cchhccchhhcCccc
Confidence            999999999987654

>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}

Probab=100.00  E-value=3.2e-36  Score=306.49  Aligned_cols=163  Identities=21%  Similarity=0.334  Sum_probs=140.3

Q ss_pred             chhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCC-CcccceeEEccccCeEEcCC
Q 015956          211 NTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTD  288 (397)
Q Consensus       211 ~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~-G~v~~~~L~CPyHGW~Fd~d  288 (397)
                      ..+|++.|++||+++||+ +|+++.++++|++++|+|+.+|+++||.|+|||||++|+. |.++++.|+||||||+||.+
T Consensus        35 ~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~n~C~Hrga~L~~~g~~~~~~i~CpyHgw~fd~d  114 (409)
T 3n0q_A           35 QEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAFHNACRHRGSVICKAKKGNNPKLVCPYHQWTYELD  114 (409)
T ss_dssp             HHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSEEECSSEECTTTCCEECTT
T ss_pred             HHHHhcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEeecCcCCcCcCCccCcCccCCCEEEECCCCCEEeCC
Confidence            457888999999999998 5999999999999999999999999999999999999995 88888999999999999999


Q ss_pred             CccccCCCcc----cccCCccccceEEEcCEEEEeCCCCCCCCCCCCCC----------CCCCceEeEEEEEEEecChhh
Q 015956          289 GKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----------PPSGFEIHAEIVMELPIEHGL  354 (397)
Q Consensus       289 G~~~~vP~~~----~~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l~----------~~~g~~~~~~~~~~~~~NWKl  354 (397)
                      |+|+.+|...    ....+|++|||++++|+|||++++++|+  +++++          ....+.+.....+.++||||+
T Consensus       115 G~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~~--l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~  192 (409)
T 3n0q_A          115 GRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICLADEAPD--FERFAEVARPYLEVHDLSNAKVAHESSIVERGNWKL  192 (409)
T ss_dssp             SCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCCC--CHHHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHH
T ss_pred             CCcccCCcCCcccCcccCCCceEEEEEECCEEEEEeCCCCCC--hHHhhhhhhhhhccccCCCeEEeeEEEEEEecchHh
Confidence            9999999753    2357899999999999999999877543  33321          112344445567789999999


Q ss_pred             HHHhhcCCCCCCccCcccccC
Q 015956          355 LLDNLLDLAHAPFTHTSTFAK  375 (397)
Q Consensus       355 ~vEN~lD~yH~p~vH~~tf~~  375 (397)
                      ++||++|+||++++|+++++.
T Consensus       193 ~~EN~~D~yH~~~~H~~~~~~  213 (409)
T 3n0q_A          193 VWENNRECYHCGGNHPALCRT  213 (409)
T ss_dssp             HHHHHTCCTTHHHHCTTGGGT
T ss_pred             hhhhccccccccccCcchhhc
Confidence            999999999999999988764

>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=6.2e-36  Score=301.49  Aligned_cols=164  Identities=21%  Similarity=0.424  Sum_probs=139.0

Q ss_pred             cchhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCC
Q 015956          210 YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDG  289 (397)
Q Consensus       210 ~~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG  289 (397)
                      .+..|.+.|++||++++|++|+++.++++|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|
T Consensus        18 ~~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~~G   97 (386)
T 2zyl_A           18 LPTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGGDG   97 (386)
T ss_dssp             CCSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECTTTCCEEETTS
T ss_pred             CchhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECCCC
Confidence            34578889999999999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             ccccCCCcccc--cCCccccceEEEcCEEEEeCCCCC-CC---CCCCCCCC--CCCceEeEEEEEEEe-cChhhHHHhhc
Q 015956          290 KCEKMPSTQLR--NVKIKSLPCFEQEGMIWIWPGDEP-PT---ATIPCLLP--PSGFEIHAEIVMELP-IEHGLLLDNLL  360 (397)
Q Consensus       290 ~~~~vP~~~~~--~~~L~~ypV~e~~G~IwV~l~~~~-p~---~~lp~l~~--~~g~~~~~~~~~~~~-~NWKl~vEN~l  360 (397)
                      +|+.+|..+..  ..++++|||.+++|+|||+++++. |+   ..+|.+..  ..++.......+.++ ||||+++||++
T Consensus        98 ~~~~~P~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~  177 (386)
T 2zyl_A           98 RCKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVT  177 (386)
T ss_dssp             BEEECTTCSSCCTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCGGGGCTTBCCCEEEEEEEESSCGGGGGGGGG
T ss_pred             CccccCcccccCcccCcceEeEEEECCEEEEEECCccCCCcccccCcccccccCCCceEEEEEEEEEcCcCHHhHhhhcc
Confidence            99999985432  357999999999999999997642 22   12343321  234443344577889 99999999999


Q ss_pred             CCCCCCccCcccc
Q 015956          361 DLAHAPFTHTSTF  373 (397)
Q Consensus       361 D~yH~p~vH~~tf  373 (397)
                      |+||++++|+++.
T Consensus       178 D~~H~~~~H~~~~  190 (386)
T 2zyl_A          178 DMAHFFYIHFGLP  190 (386)
T ss_dssp             CSTHHHHTTCEEE
T ss_pred             cccchhhhCcCcc
Confidence            9999999999753

>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A

Probab=100.00  E-value=4e-36  Score=306.04  Aligned_cols=164  Identities=19%  Similarity=0.299  Sum_probs=140.5

Q ss_pred             cchhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCC-CCcccceeEEccccCeEEcC
Q 015956          210 YNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLH-LGSVNEGRIQCPYHGWEYST  287 (397)
Q Consensus       210 ~~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls-~G~v~~~~L~CPyHGW~Fd~  287 (397)
                      +..+|++.|++||+++||+ +|+++.++++|++++|+|+.+|+++|+.|+|||||++|+ .|.++++.|+||||||+||.
T Consensus        36 ~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~n~CpHrga~L~~~g~~~~~~i~CPyHgw~fdl  115 (412)
T 3vca_A           36 LQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQGQVAKLVCPYHQWTYEL  115 (412)
T ss_dssp             HHHTTTTSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCSSEEECSSEECTTTCCEECT
T ss_pred             HHHHHhccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEEecccCCCCCCEeecccccCCCEEEcCCCCCEEcC
Confidence            3457888999999999998 699999999999999999999999999999999999998 78888899999999999999


Q ss_pred             CCccccCCCcc----cccCCccccceEEEcCEEEEeCCCCCCCCCCCCCCC----------CCCceEeEEEEEEEecChh
Q 015956          288 DGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----------PSGFEIHAEIVMELPIEHG  353 (397)
Q Consensus       288 dG~~~~vP~~~----~~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l~~----------~~g~~~~~~~~~~~~~NWK  353 (397)
                      +|+|+.+|...    ..+.+|++|||++++|+|||++++++|+  ++++++          ...+.+.....+.++||||
T Consensus       116 dG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~--l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK  193 (412)
T 3vca_A          116 DGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPPD--FQTFAQLARPYLEVHDLKDAKVAFTSTIIEKGNWK  193 (412)
T ss_dssp             TSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCCC--CHHHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHH
T ss_pred             CCccccCCccccccCcccCCCcEEEEEEECCEEEEEecCCCCC--HHHHhhhhHHhhccccCCCeEEeEEEEEEEccCch
Confidence            99999999753    2356899999999999999999877543  333221          1234444556778999999


Q ss_pred             hHHHhhcCCCCCCccCcccccC
Q 015956          354 LLLDNLLDLAHAPFTHTSTFAK  375 (397)
Q Consensus       354 l~vEN~lD~yH~p~vH~~tf~~  375 (397)
                      +++||++|+||++++|+++++.
T Consensus       194 ~~~EN~~D~yH~~~~H~~~~~~  215 (412)
T 3vca_A          194 LVWENNRECYHCSSNHPALCRS  215 (412)
T ss_dssp             HHHHHHTCCTTHHHHCHHHHTT
T ss_pred             hhHhhccccccCcccCcchhhc
Confidence            9999999999999999987653

>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*

Probab=100.00  E-value=3.6e-35  Score=302.58  Aligned_cols=165  Identities=20%  Similarity=0.318  Sum_probs=139.0

Q ss_pred             chhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc-ccceeEEccccCeEEcCC
Q 015956          211 NTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTD  288 (397)
Q Consensus       211 ~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~-v~~~~L~CPyHGW~Fd~d  288 (397)
                      ..+|.+.|++||+++||+ +|+++++++++++|+|+|+.+|+++||.|+|||||++|+.|. ++++.|+||||||+||.+
T Consensus        51 ~~if~~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~A~~n~C~Hrga~L~~g~~g~~~~i~CpyHgw~fd~~  130 (457)
T 3gzx_A           51 ERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIA  130 (457)
T ss_dssp             HHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSEEECSEEECTTTCCEEETT
T ss_pred             HHHHhcCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEEEEeCcCCCCCcCccCCCCCcCCEEEcCCCCCEecCC
Confidence            346778899999999998 699999999999999999999999999999999999999886 567899999999999999


Q ss_pred             CccccCCCccc--------------ccCCccccceEEEcCEEEEeCCCCCCCCCCCCCCC-------------CCCceEe
Q 015956          289 GKCEKMPSTQL--------------RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP-------------PSGFEIH  341 (397)
Q Consensus       289 G~~~~vP~~~~--------------~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l~~-------------~~g~~~~  341 (397)
                      |+|+.+|..+.              ...+|++|+|.+++|+||||+++++|+  ++++++             +.++.+.
T Consensus       131 G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~~~~ap~--l~e~lg~~~~~ld~~~~~~~~~~~~~  208 (457)
T 3gzx_A          131 GNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPD--LKTYLSDAMPYMDVMLDRTEAGTEAI  208 (457)
T ss_dssp             SCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEESCTTSCC--HHHHTTTCHHHHHHHHSSSTTCEEEC
T ss_pred             CcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEecCCCCCC--hHHHHhhhHHHHHHHhccCCCceEEE
Confidence            99999998531              135789999999999999999877543  333322             1244544


Q ss_pred             -EEEEEEEecChhhHHHhh-cCCCCCC-ccCcccccCCC
Q 015956          342 -AEIVMELPIEHGLLLDNL-LDLAHAP-FTHTSTFAKGW  377 (397)
Q Consensus       342 -~~~~~~~~~NWKl~vEN~-lD~yH~p-~vH~~tf~~g~  377 (397)
                       +...+.++||||+++||+ +|+||++ ++|.++++.+.
T Consensus       209 ~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~~~~  247 (457)
T 3gzx_A          209 GGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLAGL  247 (457)
T ss_dssp             SCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHHHTS
T ss_pred             cceEEEEEccccchhhhccccccCCcccceehhhhhccc
Confidence             246778999999999999 8999999 99998876543

>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*

Probab=100.00  E-value=7.4e-35  Score=293.37  Aligned_cols=162  Identities=25%  Similarity=0.501  Sum_probs=135.5

Q ss_pred             CcchhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc--cceeEEccccCeEEc
Q 015956          209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYS  286 (397)
Q Consensus       209 ~~~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v--~~~~L~CPyHGW~Fd  286 (397)
                      .+..+|++.|++||+++||++|+++.++++|++++|+| .+|+++|+.|+|||||++|+.|.+  +++.|+||||||+||
T Consensus        20 e~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R-~~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~   98 (392)
T 2de6_A           20 DAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNR-IDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYR   98 (392)
T ss_dssp             HCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEE
T ss_pred             hhhhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEc
Confidence            44668999999999999999999999999999999999 599999999999999999999875  468999999999999


Q ss_pred             C-CCccccCCCccc----ccCCccccceEEEcCEEEEeCCCCCCCC---CC-CCCCCCCCceEeEEEEEEEecChhhHHH
Q 015956          287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTA---TI-PCLLPPSGFEIHAEIVMELPIEHGLLLD  357 (397)
Q Consensus       287 ~-dG~~~~vP~~~~----~~~~L~~ypV~e~~G~IwV~l~~~~p~~---~l-p~l~~~~g~~~~~~~~~~~~~NWKl~vE  357 (397)
                      . +|+|+.+|..+.    ...+|++|||.+++|+|||+++++.+++   .+ |.+. ..++... ....+++||||+++|
T Consensus        99 ~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~l~~~l~~~~~-~~~~~~~-~~~~~~~~nwk~~~E  176 (392)
T 2de6_A           99 WEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPPPLARDTPPNFL-DDDMEIL-GKNQIIKSNWRLAVE  176 (392)
T ss_dssp             TTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSSCCCGGGGSCTTTT-CTTEEEE-EEEEEESSCHHHHHH
T ss_pred             CCCCccccccCCccccccccCCCceEeEEEECCEEEEEeCCCCCCChhHhcccccc-CCCeEEE-EEEEEEecChHhhhH
Confidence            7 999999976432    2468999999999999999997643221   12 1222 2355554 346689999999999


Q ss_pred             hhcCCCCCCccCccccc
Q 015956          358 NLLDLAHAPFTHTSTFA  374 (397)
Q Consensus       358 N~lD~yH~p~vH~~tf~  374 (397)
                      |++|+||+ ++|+++++
T Consensus       177 N~~D~~H~-~~H~~~~~  192 (392)
T 2de6_A          177 NGFDPSHI-YIHKDSIL  192 (392)
T ss_dssp             HHHCGGGG-GGGTTCHH
T ss_pred             hcchhhhh-hhhcchhc
Confidence            99999999 99998874

>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*

Probab=100.00  E-value=3.1e-35  Score=300.80  Aligned_cols=165  Identities=21%  Similarity=0.353  Sum_probs=138.5

Q ss_pred             chhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cceeEEccccCeEEcCC
Q 015956          211 NTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTD  288 (397)
Q Consensus       211 ~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v-~~~~L~CPyHGW~Fd~d  288 (397)
                      ..+|.+.|++||+++||+ +|+++.+.++|++|+|+|+.+|+++||.|+|||||++|+.|.. +++.|+||||||+||.+
T Consensus        30 ~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~g~~~~l~CpyHgw~f~~~  109 (447)
T 2bmo_A           30 KTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSN  109 (447)
T ss_dssp             HHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBCCCSSEEECSEEECTTTCCEEETT
T ss_pred             HHhhccCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEEEeccCcCCCCCccccccCCcCeEECCCCcchhcCC
Confidence            346678899999999998 6999999999999999999999999999999999999998875 56799999999999999


Q ss_pred             CccccCCCcc--------cccCCccccc-eEEEcCEEEEeCCCCCCCCCCCCCCC------------CCCceEe-EEEEE
Q 015956          289 GKCEKMPSTQ--------LRNVKIKSLP-CFEQEGMIWIWPGDEPPTATIPCLLP------------PSGFEIH-AEIVM  346 (397)
Q Consensus       289 G~~~~vP~~~--------~~~~~L~~yp-V~e~~G~IwV~l~~~~p~~~lp~l~~------------~~g~~~~-~~~~~  346 (397)
                      |+|+.+|..+        ....+|++|| |++++|+|||++++++|+  ++++++            ..++.+. ....+
T Consensus       110 G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~~~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (447)
T 2bmo_A          110 GELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPP--LIDYLGDAAWYLEPTFKYSGGLELVGPPGKV  187 (447)
T ss_dssp             SCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTCCC--HHHHHTTHHHHHHHHHTTTSCEEEEEEEEEE
T ss_pred             CcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCCCC--HHHHhccHHHHHHHHhccCCCeEEeeeeEEE
Confidence            9999999753        1236899998 999999999999876543  333211            2345554 35677


Q ss_pred             EEecChhhHHHhh-cCCCCCCccCcccccCCC
Q 015956          347 ELPIEHGLLLDNL-LDLAHAPFTHTSTFAKGW  377 (397)
Q Consensus       347 ~~~~NWKl~vEN~-lD~yH~p~vH~~tf~~g~  377 (397)
                      .++||||+++||+ +|+||++++|+.+++.++
T Consensus       188 ~~~~nwk~~~EN~~~D~yH~~~~H~~~l~~~~  219 (447)
T 2bmo_A          188 VVKANWKSFAENFVGDGYHVGWTHAAALRAGQ  219 (447)
T ss_dssp             EESSCHHHHHHHHHHBCTTHHHHTHHHHHHHC
T ss_pred             EECCCcchhhhcCCCCCCCCcccchhhhhccc
Confidence            8999999999999 799999999987776543

>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}

Probab=100.00  E-value=1.3e-34  Score=292.38  Aligned_cols=163  Identities=23%  Similarity=0.493  Sum_probs=137.3

Q ss_pred             CcchhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc--ccceeEEccccCeEEc
Q 015956          209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYS  286 (397)
Q Consensus       209 ~~~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~--v~~~~L~CPyHGW~Fd  286 (397)
                      ....+|++.|++||+++||++|+++.++++|++++|+| .+|+++|+.|+|||||++|+.|.  +.++.|+||||||+||
T Consensus        23 E~e~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fd  101 (389)
T 3gkq_A           23 DAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYR  101 (389)
T ss_dssp             HCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEE
T ss_pred             hhhhhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEE
Confidence            44578999999999999999999999999999999999 79999999999999999999986  4678999999999999


Q ss_pred             C-CCccccCCCccc----ccCCccccceEEEcCEEEEeCCCCCCCCCCCCCC----CCCCceEeEEEEEEEecChhhHHH
Q 015956          287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----PPSGFEIHAEIVMELPIEHGLLLD  357 (397)
Q Consensus       287 ~-dG~~~~vP~~~~----~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l~----~~~g~~~~~~~~~~~~~NWKl~vE  357 (397)
                      . +|+|+.+|..+.    ...+|++|||++++|+|||++++++++ ++++.+    ...++.+.. ....++||||+++|
T Consensus       102 l~dG~cv~iP~~P~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~p-pL~e~l~~~~~~~~~~~~~-~~~~i~~NWK~~~E  179 (389)
T 3gkq_A          102 WDNGKLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEPH-DLAEDVPPGFLDADLAVHG-QHRVVDANWRMGVE  179 (389)
T ss_dssp             TTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSCCC-CGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHH
T ss_pred             CCCCCeecccCCcccccccccCCcEEEEEEECCeEEEecCCCCCC-CchhhcchhccCCceEEEe-EEEEEecCchhhHH
Confidence            8 999999886432    246899999999999999999754322 232221    123455443 46789999999999


Q ss_pred             hhcCCCCCCccCcccccC
Q 015956          358 NLLDLAHAPFTHTSTFAK  375 (397)
Q Consensus       358 N~lD~yH~p~vH~~tf~~  375 (397)
                      |++|+||+ ++|+++++.
T Consensus       180 N~lD~yH~-~vH~~si~~  196 (389)
T 3gkq_A          180 NGFDAGHV-FIHKSSILL  196 (389)
T ss_dssp             HHTCSGGG-GGGTTCHHH
T ss_pred             hcchhchh-hCccccccc
Confidence            99999999 999998863

>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}

Probab=100.00  E-value=2e-34  Score=291.63  Aligned_cols=163  Identities=25%  Similarity=0.471  Sum_probs=137.2

Q ss_pred             CcchhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc--ccceeEEccccCeEEc
Q 015956          209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYS  286 (397)
Q Consensus       209 ~~~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~--v~~~~L~CPyHGW~Fd  286 (397)
                      ....+|++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|.  +.++.|+||||||+||
T Consensus        26 E~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fd  104 (394)
T 3gcf_A           26 EATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYD  104 (394)
T ss_dssp             HCTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEEE
T ss_pred             hhhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEEE
Confidence            34568999999999999999999999999999999999 79999999999999999999986  4678999999999999


Q ss_pred             C-CCccccCCCccc----ccCCccccceEEEcCEEEEeCCCCCCCCCCCCCC----CCCCceEeEEEEEEEecChhhHHH
Q 015956          287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----PPSGFEIHAEIVMELPIEHGLLLD  357 (397)
Q Consensus       287 ~-dG~~~~vP~~~~----~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l~----~~~g~~~~~~~~~~~~~NWKl~vE  357 (397)
                      . +|+|+.+|..+.    ...+|++|||++++|+|||+++++++ +++++.+    ...++.+.. ....++||||+++|
T Consensus       105 l~dG~cv~iP~~p~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~L~~~~~d~~~~~~~-~~~~i~~NWK~~~E  182 (394)
T 3gcf_A          105 LDDGRLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEP-HALSEDLPPGFLDEDTHLLG-IRRTVQSNWRLGVE  182 (394)
T ss_dssp             TTTCBEEEETTSTTCTTTTSCBCCEECEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHH
T ss_pred             CCCCceeccCCCcccccccccCceEEEEEEECCcEEEecCCCCC-CCchhhcchhhcCCceEEEe-EEEEEecCchhhHh
Confidence            8 899999887532    24689999999999999999975432 2232221    123455443 46789999999999


Q ss_pred             hhcCCCCCCccCcccccC
Q 015956          358 NLLDLAHAPFTHTSTFAK  375 (397)
Q Consensus       358 N~lD~yH~p~vH~~tf~~  375 (397)
                      |++|.||+ ++|+++++.
T Consensus       183 N~lD~yH~-~vH~~ti~~  199 (394)
T 3gcf_A          183 NGFDTTHI-FMHRNSPWV  199 (394)
T ss_dssp             HHSCSSGG-GGGTTCHHH
T ss_pred             hccccchh-hCchhhhcc
Confidence            99999999 999999874

>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A

Probab=100.00  E-value=6.1e-35  Score=299.34  Aligned_cols=165  Identities=19%  Similarity=0.331  Sum_probs=138.2

Q ss_pred             chhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cceeEEccccCeEEcCC
Q 015956          211 NTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTD  288 (397)
Q Consensus       211 ~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v-~~~~L~CPyHGW~Fd~d  288 (397)
                      ..+|.+.|++||+++||+ +|+++.+.+++++|+|+|+.+|+++||.|+|||||++|+.|.. +++.|+||||||+||.+
T Consensus        31 ~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~f~~~  110 (454)
T 2gbw_A           31 ERIFSRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRAFINSCSHRGNQICHADSGNAKAFVCNYHGWVFGQD  110 (454)
T ss_dssp             HHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCCSEEECSEEECTTTCCEEETT
T ss_pred             HHHhhcCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEeccCCCCCCCCcccccCCcCEEEeCCCCCEecCC
Confidence            346778899999999999 6999999999999999999999999999999999999998765 56799999999999999


Q ss_pred             CccccCCCccc--------ccCCccccceEEEcCEEEEeCCCCCCCCCCCCCCC-------------CCCceEe-EEEEE
Q 015956          289 GKCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP-------------PSGFEIH-AEIVM  346 (397)
Q Consensus       289 G~~~~vP~~~~--------~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l~~-------------~~g~~~~-~~~~~  346 (397)
                      |+|+.+|..+.        ...+|++|+|.+++|+|||+++++.|+  ++++++             +.++.+. ....+
T Consensus       111 G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p~--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  188 (454)
T 2gbw_A          111 GSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAPS--LEDYLGEFRYYLDTIWEGAGGGMELLGPPMKS  188 (454)
T ss_dssp             SCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCCC--HHHHHGGGHHHHHHHHTTTTTCEEEEEEEEEE
T ss_pred             CCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCCC--HHHHhhhhHHHHHHHHhcCCCceEEEeeEEEE
Confidence            99999997532        135799999999999999999876543  333211             2345554 35677


Q ss_pred             EEecChhhHHHhh-cCCCCCCccCcccccCCC
Q 015956          347 ELPIEHGLLLDNL-LDLAHAPFTHTSTFAKGW  377 (397)
Q Consensus       347 ~~~~NWKl~vEN~-lD~yH~p~vH~~tf~~g~  377 (397)
                      .++||||+++||+ +|+||++++|+.+++.++
T Consensus       189 ~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~~~~  220 (454)
T 2gbw_A          189 LLQCNWKVPAENFIGDGYHVGWTHAAALSQIG  220 (454)
T ss_dssp             EESSCTHHHHHHHHHBCTTHHHHTHHHHHHHC
T ss_pred             EeCCCccchhhhcCCccCCCCcCCHhHHhccc
Confidence            8999999999999 799999999987776543

>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*

Probab=100.00  E-value=3.8e-34  Score=293.24  Aligned_cols=160  Identities=21%  Similarity=0.402  Sum_probs=132.1

Q ss_pred             hhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc--ccceeEEccccCeEEcC-C
Q 015956          212 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-D  288 (397)
Q Consensus       212 ~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~--v~~~~L~CPyHGW~Fd~-d  288 (397)
                      .+|++.|++||++++|++|+++.++++|++++|+| .+|+++|+.|+|||||++|+.|.  ++++.|+||||||+||+ +
T Consensus        38 ~if~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~fd~~~  116 (446)
T 1z01_A           38 WGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLET  116 (446)
T ss_dssp             TCBCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCCCSSTTEEECTTTCEEEETTT
T ss_pred             hhhhhceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCCCcCCCCCCccCCCCCEEEeCCCCeEEeCCC
Confidence            36788999999999999999999999999999999 79999999999999999999986  46789999999999997 9


Q ss_pred             CccccCCCccc----ccCCccccceEEEcCEEEEeCCCCC------CCC--CCCC-CC-----------------CCCCc
Q 015956          289 GKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP------PTA--TIPC-LL-----------------PPSGF  338 (397)
Q Consensus       289 G~~~~vP~~~~----~~~~L~~ypV~e~~G~IwV~l~~~~------p~~--~lp~-l~-----------------~~~g~  338 (397)
                      |+|+.+|..+.    ...+|++|||.+++|+|||+++++.      |+.  .+|. +.                 ...++
T Consensus       117 G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (446)
T 1z01_A          117 GKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPPLAHDLPFRFPERSEQFPHPLWPSSPSVLDDNA  196 (446)
T ss_dssp             CBEEEETTCTTCTTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCCGGGGSCCCTTTTTTTSCCTTSCCCCCTTSTTE
T ss_pred             CCccccCCCccccCcccCCCcEEEEEEECCEEEEEeCCccccccCCCChhHhccchhhhhhhccccccccccccccCCCe
Confidence            99999876431    2468999999999999999997642      111  1221 00                 01244


Q ss_pred             eEeEEEEEEEecChhhHHHhhcCCCCCCccCccccc
Q 015956          339 EIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA  374 (397)
Q Consensus       339 ~~~~~~~~~~~~NWKl~vEN~lD~yH~p~vH~~tf~  374 (397)
                      .+. ....+++||||+++||++|+||+ ++|+++++
T Consensus       197 ~~~-~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~  230 (446)
T 1z01_A          197 VVH-GMHRTGFGNWRIACENGFDNAHI-LVHKDNTI  230 (446)
T ss_dssp             EEE-EEEEEEESCHHHHHTTTTCTTGG-GGGTTCHH
T ss_pred             EEE-eEEEEEcCCHHHHHHhccchhhh-hhhhhhhh
Confidence            443 34568999999999999999999 99998875

>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A

Probab=100.00  E-value=4.3e-34  Score=294.36  Aligned_cols=179  Identities=20%  Similarity=0.342  Sum_probs=143.7

Q ss_pred             cCCCCCCchhhhhhhcCCCCCcccccCCCCCcchhcccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCcEEEEee
Q 015956          179 CASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQN  257 (397)
Q Consensus       179 sa~~~tS~e~~~~~~~~~~~~sl~v~~~~~~~~~~~~~~W~~Va~ssdL~~-G~~~~v~i~G~~IVV~R~~dG~i~A~~N  257 (397)
                      .+.--+|++.++.|.++                 +|.+.|++||+++||++ |+++.++++|++|+|+|+.+|+++||.|
T Consensus        24 p~~~Ytd~~~~~~E~~~-----------------if~~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~a~~n   86 (470)
T 2b1x_A           24 PAAIINDPEVHDVERER-----------------IFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLN   86 (470)
T ss_dssp             EGGGSSCHHHHHHHHHH-----------------TTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEES
T ss_pred             CHHHcCCHHHHHHHHHH-----------------HhhcCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEec
Confidence            34445566666655543                 56778999999999995 8899999999999999999999999999


Q ss_pred             cCCCCCCCCCCCcccc-eeEEccccCeEEcCCCccccCCCccc--------ccCCcccc-ceEEEcCEEEEeCCCCCCCC
Q 015956          258 TCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSL-PCFEQEGMIWIWPGDEPPTA  327 (397)
Q Consensus       258 ~CPHRGa~Ls~G~v~~-~~L~CPyHGW~Fd~dG~~~~vP~~~~--------~~~~L~~y-pV~e~~G~IwV~l~~~~p~~  327 (397)
                      +|||||++|+.|.+.+ +.|+||||||+||.+|+|+.+|..+.        ...+|.++ .|++++|+|||++++++|+ 
T Consensus        87 ~C~Hrga~L~~g~~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~~~-  165 (470)
T 2b1x_A           87 ACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHADS-  165 (470)
T ss_dssp             SCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTTCCC-
T ss_pred             ccCCCCCEeeccCcCCCCEEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCCCCC-
Confidence            9999999999887654 79999999999999999999997532        13578888 4666799999999876543 


Q ss_pred             CCCCCCC-------------CCCceEeE-EEEEEEecChhhHHHhh-cCCCCCCccCcccccCC
Q 015956          328 TIPCLLP-------------PSGFEIHA-EIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAKG  376 (397)
Q Consensus       328 ~lp~l~~-------------~~g~~~~~-~~~~~~~~NWKl~vEN~-lD~yH~p~vH~~tf~~g  376 (397)
                       ++++++             ..++.+.. ...++++||||+++||+ +|+||++++|++++..+
T Consensus       166 -~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~~~  228 (470)
T 2b1x_A          166 -LEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVELG  228 (470)
T ss_dssp             -HHHHHGGGHHHHHHHHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHHHT
T ss_pred             -HHHHhcchhHHHHHHhccCCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhhcc
Confidence             332211             23455543 46778999999999999 99999999999876543

>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A

Probab=99.97  E-value=6.5e-33  Score=285.07  Aligned_cols=161  Identities=20%  Similarity=0.343  Sum_probs=133.9

Q ss_pred             chhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cceeEEccccCeEEcCC
Q 015956          211 NTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTD  288 (397)
Q Consensus       211 ~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v-~~~~L~CPyHGW~Fd~d  288 (397)
                      ..+|.+.|++||+++||+ +|+++.+.+++++|+|+|+.+|+++||.|+|||||++|+.|.. +++.|+||||||+||.+
T Consensus        49 ~~if~~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~fd~~  128 (460)
T 1uli_A           49 ERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTG  128 (460)
T ss_dssp             HHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSEEECSCEECTTTCCEECTT
T ss_pred             HHhhhcCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEeeeCCCCCCCCccccCCCCCEEEcCCCCCEEeCC
Confidence            346778899999999998 5888999999999999999999999999999999999998865 45799999999999999


Q ss_pred             CccccCCCccc-------ccCCccccceEEEcCEEEEeCCCCCCCCCCCCCCC-------------CCCceE-eEEEEEE
Q 015956          289 GKCEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP-------------PSGFEI-HAEIVME  347 (397)
Q Consensus       289 G~~~~vP~~~~-------~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l~~-------------~~g~~~-~~~~~~~  347 (397)
                      |+|+.+|..+.       ...+|++|+|++++|+|||++++++|+  ++++++             +.++.+ .....++
T Consensus       129 G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~--l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~  206 (460)
T 1uli_A          129 GNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAPD--LDTYLGEAKFYMDHMLDRTEAGTEAIPGIQKWV  206 (460)
T ss_dssp             CCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTTSCC--HHHHHTTHHHHHHHHHCSSTTCEEECSCCEEEE
T ss_pred             CCEeeCCccccccCCCCHhHcCCceeeEEEECCEEEEEeCCCCCC--HHHHhcchHHHHHHHhhcCCCceEEEeeEEEEE
Confidence            99999997531       236799999999999999999876543  222211             123444 2345678


Q ss_pred             EecChhhHHHhh-cCCCCC-CccCcccc
Q 015956          348 LPIEHGLLLDNL-LDLAHA-PFTHTSTF  373 (397)
Q Consensus       348 ~~~NWKl~vEN~-lD~yH~-p~vH~~tf  373 (397)
                      ++||||+++||+ +|+||+ .++|..++
T Consensus       207 ~~~Nwk~~~EN~~~D~yH~~~~~H~~~~  234 (460)
T 1uli_A          207 IPCNWKFAAEQFCSDMYHAGTTSHLSGI  234 (460)
T ss_dssp             ECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred             eccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence            999999999999 799999 69998665

>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}

Probab=99.94  E-value=2.7e-27  Score=196.11  Aligned_cols=101  Identities=19%  Similarity=0.315  Sum_probs=95.0

Q ss_pred             cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccC
Q 015956          216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM  294 (397)
Q Consensus       216 ~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~v  294 (397)
                      ..|++|+.++||++|+++.+++.|++++|+| .+|+++|+.|+|||+|++|+.|.+.++.|+||||||+||. +|+|+..
T Consensus         2 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~   80 (103)
T 2qpz_A            2 VKWIEAVALSDILEGDVLGVTVEGKELALYE-VEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCA   80 (103)
T ss_dssp             CCEEEEEETTSCCTTCEEEEEETTEEEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEET
T ss_pred             CccEEEEEHHHcCCCCEEEEEECCEEEEEEE-ECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCC
Confidence            3699999999999999999999999999999 7999999999999999999999988899999999999997 9999999


Q ss_pred             CCcccccCCccccceEEEcCEEEEeCC
Q 015956          295 PSTQLRNVKIKSLPCFEQEGMIWIWPG  321 (397)
Q Consensus       295 P~~~~~~~~L~~ypV~e~~G~IwV~l~  321 (397)
                      |..    .+|++|||++++|+|||+++
T Consensus        81 P~~----~~L~~~~v~~~~g~v~v~~~  103 (103)
T 2qpz_A           81 PVT----QNIKTYPVKIENLRVMIDLS  103 (103)
T ss_dssp             TCC----SCCCEECEEEETTEEEEECC
T ss_pred             CCC----CCCCEEeEEEECCEEEEEcC
Confidence            974    37999999999999999873

>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}

Probab=99.94  E-value=2.1e-27  Score=198.53  Aligned_cols=102  Identities=24%  Similarity=0.380  Sum_probs=94.8

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCee-EEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccC
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEP-WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM  294 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~-IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~v  294 (397)
                      .|++|+.++||++|+++.+++.|++ ++|+|. +|+++|+.|+|||+|++|+.|.++++.|+||||||+||+ +|+|+..
T Consensus         3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~   81 (108)
T 2i7f_A            3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAF   81 (108)
T ss_dssp             CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCST
T ss_pred             ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCC
Confidence            4999999999999999999999999 999997 999999999999999999999888899999999999996 9999999


Q ss_pred             CCcccccCCccccceEEEcCEEEEeCCCC
Q 015956          295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE  323 (397)
Q Consensus       295 P~~~~~~~~L~~ypV~e~~G~IwV~l~~~  323 (397)
                      |..    .+|++|||++++|+|||+++++
T Consensus        82 P~~----~~L~~~~v~~~~g~v~v~~~~~  106 (108)
T 2i7f_A           82 PCQ----IPIKTYPVTIEDGWVCIDQPKE  106 (108)
T ss_dssp             TCC----SCCCEECEEEETTEEEEECC--
T ss_pred             CCC----CCccEEeEEEECCEEEEeCCCC
Confidence            974    4799999999999999998654

>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A

Probab=99.94  E-value=3.8e-27  Score=197.89  Aligned_cols=104  Identities=19%  Similarity=0.285  Sum_probs=96.1

Q ss_pred             ceEEeeecCCCCCCCceeEee-CCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccC
Q 015956          217 FWFPVAFSTDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM  294 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i-~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~v  294 (397)
                      .|++|+.++||++|+++.+++ .|++++|+|..+|+++|+.|+|||+|++|+.|.++++.|+||||||+||. +|+|+. 
T Consensus         1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~-   79 (111)
T 1vm9_A            1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN-   79 (111)
T ss_dssp             CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-
T ss_pred             CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-
Confidence            499999999999999999999 99999999988999999999999999999999888899999999999998 599998 


Q ss_pred             CCcccccCCccccceEEEcCEEEEeCCCCCC
Q 015956          295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP  325 (397)
Q Consensus       295 P~~~~~~~~L~~ypV~e~~G~IwV~l~~~~p  325 (397)
                      |..    .+|++|++++++|+|||++++++|
T Consensus        80 p~~----~~L~~~~v~~~~g~v~v~~~~~~~  106 (111)
T 1vm9_A           80 PDD----AALAEYPVEVKGDDIYVSTKGILP  106 (111)
T ss_dssp             SSS----CBCCEECEEEETTEEEECCTTCCC
T ss_pred             CCc----CCcCEEEEEEECCEEEEeccCcCC
Confidence            653    479999999999999999976644

>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*

Probab=99.94  E-value=6.5e-27  Score=196.96  Aligned_cols=102  Identities=18%  Similarity=0.243  Sum_probs=95.6

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCC-cccceeEEccccCeEEcC-CCccccC
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG-SVNEGRIQCPYHGWEYST-DGKCEKM  294 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G-~v~~~~L~CPyHGW~Fd~-dG~~~~v  294 (397)
                      .|++|+.++||++|+++.+++.|++++|+|. +|+++||.|+|||+|++|+.| .++++.|+||||||+||. +|+|+..
T Consensus         5 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~~   83 (112)
T 1fqt_A            5 KFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSP   83 (112)
T ss_dssp             CCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEES
T ss_pred             ceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-CCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeCC
Confidence            5999999999999999999999999999997 999999999999999999998 788889999999999998 8999999


Q ss_pred             CCcccccCCccccceEEEcCEEEEeCCCC
Q 015956          295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE  323 (397)
Q Consensus       295 P~~~~~~~~L~~ypV~e~~G~IwV~l~~~  323 (397)
                      |..    .+|++|||++++|+|||+++++
T Consensus        84 P~~----~~L~~~~v~~~~g~v~v~~~~~  108 (112)
T 1fqt_A           84 PPC----EALKIFPIRIEDNDVLVDFEAG  108 (112)
T ss_dssp             SCC----SCCCBCCEEEETTEEEECTTCC
T ss_pred             CCC----CCccEEEEEEECCEEEEEeccc
Confidence            974    4799999999999999998654

>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*

Probab=99.94  E-value=4.8e-27  Score=195.73  Aligned_cols=101  Identities=23%  Similarity=0.348  Sum_probs=95.1

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccCC
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP  295 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~vP  295 (397)
                      +|++|+.++||++|+++.+.+.|++++|+| .+|+++|+.|+|||+|++|+.|.++++.|+||||||+||+ +|+|+.+|
T Consensus         1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P   79 (106)
T 3dqy_A            1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCN-VDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALP   79 (106)
T ss_dssp             CCEEEEEGGGSCTTCEEEECCSSSCEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETT
T ss_pred             CcEEEEEHHHCCCCCEEEEEECCEEEEEEE-ECCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence            599999999999999999999999999999 6999999999999999999999988899999999999995 99999999


Q ss_pred             CcccccCCccccceEEEcCEEEEeCCC
Q 015956          296 STQLRNVKIKSLPCFEQEGMIWIWPGD  322 (397)
Q Consensus       296 ~~~~~~~~L~~ypV~e~~G~IwV~l~~  322 (397)
                      ..    .+|++||+++++|.|||++++
T Consensus        80 ~~----~~L~~~~v~~~~g~v~v~~~~  102 (106)
T 3dqy_A           80 AC----KPIKVFPIKVEGDEVHVDLDN  102 (106)
T ss_dssp             CC----SCCCEECEEEETTEEEECGGG
T ss_pred             CC----CCccEEEEEEECCEEEEEccc
Confidence            74    489999999999999999854

>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*

Probab=99.94  E-value=6.4e-27  Score=198.49  Aligned_cols=103  Identities=21%  Similarity=0.465  Sum_probs=96.0

Q ss_pred             cceEEeeecCCCCCCCceeEeeCCe-eEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCcccc
Q 015956          216 NFWFPVAFSTDLKDDTMVPFDCFEE-PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEK  293 (397)
Q Consensus       216 ~~W~~Va~ssdL~~G~~~~v~i~G~-~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~  293 (397)
                      +.|++|+.++||++|+++.+++.|+ +++|+|. +|+++|+.|+|||+|++|+.|.+.++.|+||||||+||+ +|+|+.
T Consensus         3 ~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~   81 (115)
T 2de6_D            3 QIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-GDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPAS   81 (115)
T ss_dssp             -CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-TTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEEE
T ss_pred             cceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEeC
Confidence            5699999999999999999999999 9999997 999999999999999999999888899999999999996 999999


Q ss_pred             CCCcccccCCccccceEEEcCEEEEeCCCC
Q 015956          294 MPSTQLRNVKIKSLPCFEQEGMIWIWPGDE  323 (397)
Q Consensus       294 vP~~~~~~~~L~~ypV~e~~G~IwV~l~~~  323 (397)
                      .|..    .+|++|||++++|+|||+++++
T Consensus        82 ~P~~----~~L~~~~v~~~~g~V~v~~~~~  107 (115)
T 2de6_D           82 SPCT----VPLGVFEVEVKEGEVYVAGEKK  107 (115)
T ss_dssp             TTCC----SCCCEEEEEESSSEEEEEEEEC
T ss_pred             CCCc----CCCCEEEEEEECCEEEEecCCc
Confidence            9974    4799999999999999998654

>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3

Probab=99.93  E-value=3.1e-26  Score=192.83  Aligned_cols=100  Identities=19%  Similarity=0.217  Sum_probs=92.5

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCC-cEEEEeecCCCCCC-CCCCCcccc---e-eEEccccCeEEcC-CC
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVNE---G-RIQCPYHGWEYST-DG  289 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG-~i~A~~N~CPHRGa-~Ls~G~v~~---~-~L~CPyHGW~Fd~-dG  289 (397)
                      .|+.|+.++||++|+++.+++.|++++|+|..+| +++|+.|+|||+|+ +|+.|.+.+   . .|+||||||+||. +|
T Consensus         6 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG   85 (113)
T 2jo6_A            6 QWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDG   85 (113)
T ss_dssp             CCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTT
T ss_pred             hheEEeeHHHCCCCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCc
Confidence            4999999999999999999999999999998799 69999999999999 799998752   3 8999999999998 99


Q ss_pred             ccccCCCcccccCCccccceEEEcCEEEEeCC
Q 015956          290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG  321 (397)
Q Consensus       290 ~~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l~  321 (397)
                      +|+..|.     .+|++|||++++|+|||+++
T Consensus        86 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~  112 (113)
T 2jo6_A           86 LCMEDEQ-----FSVKHYEARVKDGVVQLRGG  112 (113)
T ss_dssp             EETTTTT-----TCCCEEEEEEETTEEEEECC
T ss_pred             cCCCCCc-----ccccEEeEEEECCEEEEEcC
Confidence            9999997     37999999999999999974

>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3

Probab=99.93  E-value=2.1e-26  Score=196.33  Aligned_cols=103  Identities=14%  Similarity=0.016  Sum_probs=95.1

Q ss_pred             cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCC-CCCCCcccce----eEEccccCeEEcC-CC
Q 015956          216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC-PLHLGSVNEG----RIQCPYHGWEYST-DG  289 (397)
Q Consensus       216 ~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa-~Ls~G~v~~~----~L~CPyHGW~Fd~-dG  289 (397)
                      ..|++|+.++||++|+++.+++.|++++|+|..+|+++|+.|+|||+|+ +|+.|.+.+.    .|+||||||+||. +|
T Consensus         4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG   83 (119)
T 3c0d_A            4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSG   83 (119)
T ss_dssp             CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTC
T ss_pred             CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCC
Confidence            4699999999999999999999999999999889999999999999999 8999987643    8999999999998 99


Q ss_pred             ccccCCCcccccCCccccceEEEcCEEEEeCCCC
Q 015956          290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE  323 (397)
Q Consensus       290 ~~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l~~~  323 (397)
                      +|+..|.     .+|++|||++++|.|||++++.
T Consensus        84 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~~~  112 (119)
T 3c0d_A           84 QCLEDEA-----HCLKTWRVTVDDNQVCYLAKEL  112 (119)
T ss_dssp             BBSSCTT-----CBCCEECEEESSSEEEEECCCC
T ss_pred             cCCCCCC-----ceeeEEEEEEECCEEEEEeCCc
Confidence            9999997     3799999999999999998654

>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3

Probab=99.93  E-value=8.5e-26  Score=195.75  Aligned_cols=104  Identities=17%  Similarity=0.167  Sum_probs=94.8

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCC-cEEEEeecCCCCCC-CCCCCccc---c-eeEEccccCeEEcC-CC
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---E-GRIQCPYHGWEYST-DG  289 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG-~i~A~~N~CPHRGa-~Ls~G~v~---~-~~L~CPyHGW~Fd~-dG  289 (397)
                      .|+.||.++||++|+++.+++.|++++|+|..+| +++|+.|+|||+|+ +|+.|.+.   + ..|+||||||+||. +|
T Consensus         3 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG   82 (130)
T 2jza_A            3 QWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDG   82 (130)
T ss_dssp             SEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTC
T ss_pred             ceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCc
Confidence            5999999999999999999999999999998677 99999999999999 59999875   2 38999999999998 99


Q ss_pred             ccccCCCcccccCCccccceEEEcCEEEEeCCCCCC
Q 015956          290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP  325 (397)
Q Consensus       290 ~~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l~~~~p  325 (397)
                      +|+..|.     .+|++|||++++|+|||+++++++
T Consensus        83 ~~~~~P~-----~~L~~~~v~v~~g~V~V~~~~~~~  113 (130)
T 2jza_A           83 FCLEDGA-----YSVAAYDTQVTNGNVQISIADSDV  113 (130)
T ss_dssp             CBSSCCS-----SCCBCCCEEESSSEEEEECCCCCC
T ss_pred             CCCCCCc-----CcceEEEEEEECCEEEEEeCCCCC
Confidence            9999997     379999999999999999976543

>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}

Probab=99.93  E-value=4.3e-26  Score=195.15  Aligned_cols=102  Identities=20%  Similarity=0.318  Sum_probs=94.6

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCC--cccceeEEccccCeEEcC-CCcccc
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYST-DGKCEK  293 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G--~v~~~~L~CPyHGW~Fd~-dG~~~~  293 (397)
                      .|++|+.++||++|+++.+++.|++++|+|. +|+++|+.|+|||+|++|+.|  .++++.|+||||||+||+ +|+|+.
T Consensus        10 ~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~~   88 (121)
T 3gce_A           10 TPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-GDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTA   88 (121)
T ss_dssp             CCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEEE
T ss_pred             CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEeC
Confidence            4999999999999999999999999999995 999999999999999999999  888899999999999995 999999


Q ss_pred             CCCcccccCCccccceEEEcCEEEEeCCCC
Q 015956          294 MPSTQLRNVKIKSLPCFEQEGMIWIWPGDE  323 (397)
Q Consensus       294 vP~~~~~~~~L~~ypV~e~~G~IwV~l~~~  323 (397)
                      +|..    .+|++|||++++|.|||+++..
T Consensus        89 ~P~~----~~L~~~~v~v~~g~V~v~~~~~  114 (121)
T 3gce_A           89 LPCV----LPVRAYDVVVDGTEILVAPKEA  114 (121)
T ss_dssp             TTCC----SCCCBCCEEEETTEEEECCC--
T ss_pred             CCCc----CCcceEEEEEECCEEEEEECcc
Confidence            9984    4799999999999999998654

>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}

Probab=99.92  E-value=4.5e-26  Score=203.02  Aligned_cols=111  Identities=23%  Similarity=0.375  Sum_probs=95.8

Q ss_pred             cccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccc----eeEEccccCeEEcC-C
Q 015956          214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE----GRIQCPYHGWEYST-D  288 (397)
Q Consensus       214 ~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~----~~L~CPyHGW~Fd~-d  288 (397)
                      ..+.|++||+++||++|+++.++++|++|+|+| .+|+++||.|+|||||++|+.|.+.+    +.|+||||||+||. +
T Consensus        13 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r-~~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~t   91 (157)
T 3d89_A           13 KKYTSVCVGREEDIRKSERMTAVVHDREVVIFY-HKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLAT   91 (157)
T ss_dssp             -CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEE-ETTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred             CCCceEEEEEHHHCCCCCeEEEEECCEEEEEEE-ECCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCC
Confidence            467899999999999999999999999999999 69999999999999999999998764    68999999999998 9


Q ss_pred             Ccccc--C-CCcc-c------ccCCccccceEEEcCEEEEeCCCCCC
Q 015956          289 GKCEK--M-PSTQ-L------RNVKIKSLPCFEQEGMIWIWPGDEPP  325 (397)
Q Consensus       289 G~~~~--v-P~~~-~------~~~~L~~ypV~e~~G~IwV~l~~~~p  325 (397)
                      |+|+.  + |... .      ...+|++|||++++|+|||+++++++
T Consensus        92 G~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~~  138 (157)
T 3d89_A           92 GEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEPF  138 (157)
T ss_dssp             CEEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEECCCCSS
T ss_pred             cCEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEeCCCCc
Confidence            99986  2 5321 1      12579999999999999999987643

>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}

Probab=99.92  E-value=2.1e-25  Score=191.23  Aligned_cols=101  Identities=19%  Similarity=0.203  Sum_probs=89.1

Q ss_pred             cceEEeeecCCCCCCCceeEeeC-CeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccc-----eeEEccccCeEEcC-C
Q 015956          216 NFWFPVAFSTDLKDDTMVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-----GRIQCPYHGWEYST-D  288 (397)
Q Consensus       216 ~~W~~Va~ssdL~~G~~~~v~i~-G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~-----~~L~CPyHGW~Fd~-d  288 (397)
                      +.|++||.++||++|..+.+.+. |++|+|||..+|+++|++|+|||+|++|..|.+.+     ..|+||||||+||+ +
T Consensus         8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~t   87 (119)
T 4aiv_A            8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDD   87 (119)
T ss_dssp             EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred             cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCC
Confidence            46999999999999998888885 79999999989999999999999999998765432     36999999999995 9


Q ss_pred             CccccCCCcccccCCccccceEEE-cCEEEEeCC
Q 015956          289 GKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWIWPG  321 (397)
Q Consensus       289 G~~~~vP~~~~~~~~L~~ypV~e~-~G~IwV~l~  321 (397)
                      |+|+..|..     ++++|||+++ +|+|||.+.
T Consensus        88 G~~~~~p~~-----~l~~ypv~ve~dG~V~V~~~  116 (119)
T 4aiv_A           88 GSCLDDPRV-----SVPVYPARVTPEGRIQVARV  116 (119)
T ss_dssp             CBBSSCTTC-----BCCEECEEECTTSEEEEEEE
T ss_pred             CcCcCCCCC-----ccceEEEEEEeCCEEEEecC
Confidence            999999974     7999999875 899999863

>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}

Probab=99.90  E-value=3.2e-24  Score=195.73  Aligned_cols=143  Identities=15%  Similarity=0.148  Sum_probs=88.9

Q ss_pred             HHHHHHHHhhhcCCCCccccccccCCCCCCchhhhhhhcCCCCCcccccCCCCCcchhcccceEEeeecCCCCCCCceeE
Q 015956          156 AYMEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPF  235 (397)
Q Consensus       156 ~~~~~~~r~r~l~~ssaat~~~asa~~~tS~e~~~~~~~~~~~~sl~v~~~~~~~~~~~~~~W~~Va~ssdL~~G~~~~v  235 (397)
                      ..|.++.||.||+++.+|++..+.++-...   ..+.+ ...+.      ...+|+.      ..||.++||++|+++.+
T Consensus         5 ~~~~~~~rr~fl~~~~~a~~~~~~~~~~~~---~~~~~-~~~~~------~~~~~p~------~~v~~~~dL~~g~~~~v   68 (175)
T 4aay_B            5 QNMVDIGRRQFLRGGALAAAGATAAVFGVG---APQAR-AATAA------AGVEYPA------NRLANISELTLNEPLDV   68 (175)
T ss_dssp             -------------------------------------------C------CSCCCCC------EEEEEGGGCBBTBCEEE
T ss_pred             hhhccccHHHHhhhhHHhhhheeEeccccc---ccccc-ccccC------cccCCCc------ceEEEHHHCCCCCEEEE
Confidence            457789999999976666654333321110   00011 11111      1124543      38999999999999999


Q ss_pred             eeCC--eeEEEEEc---------CCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC--CCccccCCCcccccC
Q 015956          236 DCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST--DGKCEKMPSTQLRNV  302 (397)
Q Consensus       236 ~i~G--~~IVV~R~---------~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~--dG~~~~vP~~~~~~~  302 (397)
                      ++.+  .+++|+|.         .+|+++||+|+|||+|++|+.| .+++.|+||||||+||.  +|+|+..|..    .
T Consensus        69 ~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~----~  143 (175)
T 4aay_B           69 AYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVFDPEKGGQQVWGQAT----Q  143 (175)
T ss_dssp             ESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEEGGGTTEEEECSCS----S
T ss_pred             EECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEECCCCCceEecCCCC----C
Confidence            9974  58999996         5899999999999999999988 57789999999999997  4999999984    4


Q ss_pred             CccccceEE-EcCEEEEe
Q 015956          303 KIKSLPCFE-QEGMIWIW  319 (397)
Q Consensus       303 ~L~~ypV~e-~~G~IwV~  319 (397)
                      .|++||+++ .+|.||+-
T Consensus       144 ~L~~y~v~vd~dG~V~av  161 (175)
T 4aay_B          144 NLPQYVLRVADNGDIFAE  161 (175)
T ss_dssp             CCCBEEEEECTTSEEEEE
T ss_pred             CcCEEEEEEEcCCEEEEE
Confidence            799999999 69999964

>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1

Probab=99.86  E-value=5.8e-22  Score=171.80  Aligned_cols=97  Identities=16%  Similarity=0.284  Sum_probs=89.1

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcC--------------------------CCcEEEEeecCCCCCCCCCCCc
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGS  270 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~--------------------------dG~i~A~~N~CPHRGa~Ls~G~  270 (397)
                      .|..+ ..++|++|+.+.+.+.|.+++|+|..                          +|+++||.|+|||+|++|+.|.
T Consensus         5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g~   83 (129)
T 1rie_A            5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANA   83 (129)
T ss_dssp             SSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETC
T ss_pred             CceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccccc
Confidence            46677 89999999999999999999999953                          8999999999999999999998


Q ss_pred             ccceeEEccccCeEEcCCCccccCCCcccccCCccccceEE-EcCEEEE
Q 015956          271 VNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI  318 (397)
Q Consensus       271 v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e-~~G~IwV  318 (397)
                      ++++.|+||||||+||.+|+++..|..    ..|+.||+++ ++|.|||
T Consensus        84 ~~~~~i~CP~Hg~~fd~~G~~~~~P~~----~~l~~~~v~v~~~~~v~v  128 (129)
T 1rie_A           84 GDFGGYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV  128 (129)
T ss_dssp             TTTEEEEETTTTEEEETTCCEEESSCC----SCCCCCCEEESSSSEEEE
T ss_pred             CCCCEEEcCCCCCEEcCCCCEeeCCCC----CCCCceeEEEEeCCEEEE
Confidence            888999999999999999999999884    3799999999 8999987

>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*

Probab=99.85  E-value=1e-21  Score=172.58  Aligned_cols=102  Identities=17%  Similarity=0.264  Sum_probs=89.3

Q ss_pred             ccceEEeee-cCCCCCCCceeEe-eCCeeEEEEEcCCCcE--EEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCc
Q 015956          215 KNFWFPVAF-STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK  290 (397)
Q Consensus       215 ~~~W~~Va~-ssdL~~G~~~~v~-i~G~~IVV~R~~dG~i--~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~  290 (397)
                      ...|+.++. .+||++|..+.+. +.+++++++|..+|++  +|++|+|||+|++|+.|. .++.|+||||||+||.+|+
T Consensus        19 ~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~   97 (139)
T 1rfs_A           19 LGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGR   97 (139)
T ss_dssp             TSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCC
T ss_pred             CCCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEECCCCC
Confidence            356888887 8999988766665 5778888888889999  999999999999999877 4689999999999999999


Q ss_pred             cccCCCcccccCCccccceEEEcCEEEEeCC
Q 015956          291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG  321 (397)
Q Consensus       291 ~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l~  321 (397)
                      |+..|..    .+|++|||++++|.|||.+.
T Consensus        98 ~~~~P~~----~~L~~~~v~v~~g~V~V~~~  124 (139)
T 1rfs_A           98 VVRGPAP----LSLALAHCDVDDGKVVFVPW  124 (139)
T ss_dssp             EEESSCC----SCCCEEEEEEETTEEEEEEC
T ss_pred             CccCCCC----CCCCEEEEEEECCEEEEEeC
Confidence            9999974    47999999999999999864

>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*

Probab=99.84  E-value=3.1e-21  Score=168.01  Aligned_cols=97  Identities=18%  Similarity=0.217  Sum_probs=87.6

Q ss_pred             eEEeeecCCCCCCCceeEeeC--CeeEEEEEcC---------CCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEc
Q 015956          218 WFPVAFSTDLKDDTMVPFDCF--EEPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS  286 (397)
Q Consensus       218 W~~Va~ssdL~~G~~~~v~i~--G~~IVV~R~~---------dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd  286 (397)
                      |+.||.++||++|+++.+.+.  +.+++|+|..         +|+++||.|.|||+|++|+.+ ..++.|+||||||+||
T Consensus         8 ~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~~~~~i~CP~Hg~~Fd   86 (133)
T 1g8k_B            8 ATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-SSSKTFSCPCHFTEFD   86 (133)
T ss_dssp             CEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEE
T ss_pred             ceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCcc-cCCCEEECCCCCCEEC
Confidence            889999999999999999985  8999999974         899999999999999999974 4568999999999999


Q ss_pred             C--CCccccCCCcccccCCccccceEEE--cCEEEEe
Q 015956          287 T--DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW  319 (397)
Q Consensus       287 ~--dG~~~~vP~~~~~~~~L~~ypV~e~--~G~IwV~  319 (397)
                      .  +|+++..|..    ..|++|+++++  +|.|||.
T Consensus        87 ~~~~G~~~~gP~~----~~L~~~~v~v~~~g~~V~v~  119 (133)
T 1g8k_B           87 AEKAGQMICGEAT----ADLPRVLLRYDAASDALTAV  119 (133)
T ss_dssp             GGGTTEEEESSCS----SCCCEEEEEEETTTTEEEEE
T ss_pred             CCCCCCEEcCCCC----CCCCEEEEEEECCCCEEEEE
Confidence            7  8999999974    37999999998  6789995

>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*

Probab=99.80  E-value=2e-20  Score=171.98  Aligned_cols=96  Identities=22%  Similarity=0.265  Sum_probs=84.2

Q ss_pred             eEEeeecCCCCCCCceeEeeCCeeEEEEEc----------------------------------------CCCcEEEEee
Q 015956          218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRG----------------------------------------KDGIPGCVQN  257 (397)
Q Consensus       218 W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~----------------------------------------~dG~i~A~~N  257 (397)
                      |+.| ..++|++|+.+.+++.|.+++|+|.                                        .+|+++|+.|
T Consensus        49 ~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~  127 (187)
T 2qjy_C           49 SIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG  127 (187)
T ss_dssp             CEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEEC
T ss_pred             cEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEeC
Confidence            5555 8999999999999999999999992                                        2899999999


Q ss_pred             cCCCCCCCCCCC-cccceeEEccccCeEEcCCCccccCCCcccccCCccccceEEE-cCEEEE
Q 015956          258 TCAHRACPLHLG-SVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI  318 (397)
Q Consensus       258 ~CPHRGa~Ls~G-~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e~-~G~IwV  318 (397)
                      +|||+||+|..+ ..+.+.|.||||||+||.+|+++..|..    ..|+.||+++. +|.|+|
T Consensus       128 ~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~----~~L~~~~~~v~~d~~i~i  186 (187)
T 2qjy_C          128 VCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL  186 (187)
T ss_dssp             CCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEEEETTEEEE
T ss_pred             ccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC----CCCceEEEEEEeCCEEEE
Confidence            999999999973 3344799999999999999999999874    47999999986 689987

>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}

Probab=99.66  E-value=6.6e-21  Score=166.78  Aligned_cols=97  Identities=16%  Similarity=0.303  Sum_probs=81.3

Q ss_pred             eecCCCCCCCceeEe-eCCeeEEEEEcCCCc--EEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCCCcc
Q 015956          222 AFSTDLKDDTMVPFD-CFEEPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ  298 (397)
Q Consensus       222 a~ssdL~~G~~~~v~-i~G~~IVV~R~~dG~--i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~  298 (397)
                      ...+++++|+...+. +.|.+.+++|..+|+  ++|+.|+|||+|++|+.|. .++.|+||||||+||.+|+|+..|.. 
T Consensus        21 ~~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~~~~P~~-   98 (133)
T 3azc_A           21 EYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYDSTGKVVRGPAP-   98 (133)
Confidence            356788888877776 334455555557898  9999999999999999887 66899999999999999999999974 


Q ss_pred             cccCCccccceEE-EcCEEEEeCCCC
Q 015956          299 LRNVKIKSLPCFE-QEGMIWIWPGDE  323 (397)
Q Consensus       299 ~~~~~L~~ypV~e-~~G~IwV~l~~~  323 (397)
                         .+|++|||++ ++|.|||.++.+
T Consensus        99 ---~~L~~ypv~v~~~g~V~V~~~~e  121 (133)
T 3azc_A           99 ---LSLALVKATVTEDDKLVFTPWTE  121 (133)
Confidence               3799999999 999999987543

>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*

Probab=99.78  E-value=7.6e-19  Score=161.35  Aligned_cols=99  Identities=17%  Similarity=0.157  Sum_probs=85.5

Q ss_pred             ccceEEeeecCCCCCCCceeEeeCCeeEEEEEcC--------------------------CCcEEEEeecCCCCCCCCCC
Q 015956          215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHL  268 (397)
Q Consensus       215 ~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~--------------------------dG~i~A~~N~CPHRGa~Ls~  268 (397)
                      ...|+.| .+++|++|+.+.+.+.|++++|+|..                          +|+++|+.|+|||+||.+..
T Consensus        60 a~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~  138 (185)
T 3cx5_E           60 AMAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIG  138 (185)
T ss_dssp             CCCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEE
T ss_pred             ccCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceecc
Confidence            3469899 69999999999999999999999963                          69999999999999996443


Q ss_pred             CcccceeEEccccCeEEcCCCccccCCCcccccCCccccceEEEcCEEEE
Q 015956          269 GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI  318 (397)
Q Consensus       269 G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e~~G~IwV  318 (397)
                      ...+.+.|.||||||+||.+|+++..|..    ..|+.+|+.+.+|.|||
T Consensus       139 ~~~~~~~~~CPcHGs~FD~~G~v~~gPa~----~~L~v~p~~v~~~~I~v  184 (185)
T 3cx5_E          139 EAGDFGGWFCPCHGSHYDISGRIRKGPAP----LNLEIPAYEFDGDKVIV  184 (185)
T ss_dssp             EETTTTEEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTEEEE
T ss_pred             CCCCCCEEEcCCCCCEECCCCCEecCCCC----CCcceEEEEEECCEEEE
Confidence            32355799999999999999999999874    36888888889999987

>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...

Probab=99.76  E-value=1.2e-18  Score=161.56  Aligned_cols=95  Identities=18%  Similarity=0.292  Sum_probs=86.6

Q ss_pred             EeeecCCCCCCCceeEeeCCeeEEEEEc--------------------------CCCcEEEEeecCCCCCCCCCCCcccc
Q 015956          220 PVAFSTDLKDDTMVPFDCFEEPWVIFRG--------------------------KDGIPGCVQNTCAHRACPLHLGSVNE  273 (397)
Q Consensus       220 ~Va~ssdL~~G~~~~v~i~G~~IVV~R~--------------------------~dG~i~A~~N~CPHRGa~Ls~G~v~~  273 (397)
                      ..+..++|++|+.+.+++.|.+++|+|.                          .+|+++|+.|+|||+||+|..|.++.
T Consensus        74 v~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~  153 (196)
T 1pp9_E           74 IEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDF  153 (196)
T ss_dssp             EEEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTT
T ss_pred             cEEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCC
Confidence            3478999999999999999999999985                          28999999999999999999988777


Q ss_pred             eeEEccccCeEEcCCCccccCCCcccccCCccccceEE-EcCEEEE
Q 015956          274 GRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI  318 (397)
Q Consensus       274 ~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e-~~G~IwV  318 (397)
                      +.|.||||||+||.+|+++..|..    ..|..||+++ .+|.|+|
T Consensus       154 ~~~~CP~HGs~FD~~G~v~~gPa~----~~L~~~p~~v~~d~~I~v  195 (196)
T 1pp9_E          154 GGYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV  195 (196)
T ss_dssp             SSEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTTEEEE
T ss_pred             CEEEeCCCCCEECCCCCCccCCCC----CCCcceeEEEEECCEEEE
Confidence            899999999999999999999884    4799999999 7999987

>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A

Probab=99.76  E-value=1.4e-18  Score=153.28  Aligned_cols=93  Identities=19%  Similarity=0.237  Sum_probs=83.7

Q ss_pred             eecCCCCCCCceeEeeCCeeEEEEEc----------------------------------------CCCcEEEEeecCCC
Q 015956          222 AFSTDLKDDTMVPFDCFEEPWVIFRG----------------------------------------KDGIPGCVQNTCAH  261 (397)
Q Consensus       222 a~ssdL~~G~~~~v~i~G~~IVV~R~----------------------------------------~dG~i~A~~N~CPH  261 (397)
                      ..+++|++|+.++++..|.|+.|.|.                                        .+|+++|+.|+|||
T Consensus         6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H   85 (141)
T 2nwf_A            6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH   85 (141)
T ss_dssp             EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred             EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence            46889999999999999999999984                                        17899999999999


Q ss_pred             CCCCCCC-CcccceeEEccccCeEEcCCCccccCCCcccccCCccccceEE-EcCEEEE
Q 015956          262 RACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI  318 (397)
Q Consensus       262 RGa~Ls~-G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e-~~G~IwV  318 (397)
                      +||+|+. +.++++.|.||||||+||.+|+++..|+.    ..|..||+++ .+|.|+|
T Consensus        86 ~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~----~~L~~~pv~v~~d~~i~v  140 (141)
T 2nwf_A           86 LGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL  140 (141)
T ss_dssp             TCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEESSSSEEEE
T ss_pred             CCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCC----CCCCceeEEEEECCEEEE
Confidence            9999998 66666899999999999999999999874    3799999999 7999987

>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A

Probab=99.75  E-value=2.5e-18  Score=155.28  Aligned_cols=98  Identities=20%  Similarity=0.288  Sum_probs=81.2

Q ss_pred             ecCCCCCCCceeEeeCCee-------------EEEEEc-------------CCCcEEEEeecCCCCCCCCCCCcccceeE
Q 015956          223 FSTDLKDDTMVPFDCFEEP-------------WVIFRG-------------KDGIPGCVQNTCAHRACPLHLGSVNEGRI  276 (397)
Q Consensus       223 ~ssdL~~G~~~~v~i~G~~-------------IVV~R~-------------~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L  276 (397)
                      ..++|++|+.+.+.+-|.+             +++.|-             .+| ++||.|+|||+||+|+.|.++++.|
T Consensus        26 ~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-v~A~~~~CpH~G~~L~~g~~~~~~i  104 (165)
T 1nyk_A           26 RLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEG-VVAYSAVCTHLGCIVSQWVADEEAA  104 (165)
T ss_dssp             BGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGSCHHHHTTCBTT-EEEEECBCTTTCCBCCEEEGGGTEE
T ss_pred             cHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhcCccccccccCC-EEEEEeecCCCCeEcccccCCCCEE
Confidence            6788888887777654433             556664             355 9999999999999999888888899


Q ss_pred             EccccCeEEcC-CCc-cccCCCcccccCCccccceEEEcCEEEEeCCCCCC
Q 015956          277 QCPYHGWEYST-DGK-CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP  325 (397)
Q Consensus       277 ~CPyHGW~Fd~-dG~-~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l~~~~p  325 (397)
                      .||||||+||. +|. |+..|+.    ..|..||+++++|.|||+++...|
T Consensus       105 ~CP~Hgs~Fd~~tG~~~~~gPa~----~~L~~~~v~v~~g~V~v~~~~~~~  151 (165)
T 1nyk_A          105 LCPCHGGVYDLRHGAQVIAGPPP----RPVPQLPVRVEDGVLVAAGEFLGP  151 (165)
T ss_dssp             ECTTTCCEEEGGGTTEEEESSCS----SCCCEECEEEETTEEEECSSCSSC
T ss_pred             ECCCCCCEEcCCCCCeeecCCCC----CCCcEEEEEEECCEEEEEecCccc
Confidence            99999999997 486 9999874    479999999999999999876544

>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*

Probab=99.72  E-value=7.6e-19  Score=160.07  Aligned_cols=92  Identities=18%  Similarity=0.325  Sum_probs=82.3

Q ss_pred             cCCCCCCCceeEe-eCCeeEEEEEcCCCcE--EEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCCCcccc
Q 015956          224 STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR  300 (397)
Q Consensus       224 ssdL~~G~~~~v~-i~G~~IVV~R~~dG~i--~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~  300 (397)
                      .++|++|+...+. +.|++++++|+.+|++  +|+.|+|||+||+|..+. .++.|.||||||+||.+|+++..|..   
T Consensus        70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~-~~~~~~CP~Hgs~Fd~~G~~~~gPa~---  145 (179)
T 1vf5_D           70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA-AENKFKCPCHGSQYDETGRVIRGPAP---  145 (179)
T ss_dssp             HHCCCTTCCCEESCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS-SSSSEECTTTCCEECSSSCCCSSSCC---
T ss_pred             ccccCCCceEEEeccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccC-CCCEEECCCCCCEECCCCcEecCCCC---
Confidence            5788999887776 7788999888899998  999999999999999887 45899999999999999999999974   


Q ss_pred             cCCccccceEEEcCEEEEeC
Q 015956          301 NVKIKSLPCFEQEGMIWIWP  320 (397)
Q Consensus       301 ~~~L~~ypV~e~~G~IwV~l  320 (397)
                       ..|+.||+.+++|.|||.+
T Consensus       146 -~~L~~~~v~v~~g~v~v~~  164 (179)
T 1vf5_D          146 -LSLALCHATVQDDNIVLTP  164 (179)
T ss_dssp             -SCCBCCCCCCSSSSCCCCC
T ss_pred             -CCCCeEEEEEECCEEEEEe
Confidence             4799999999999999975

>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1

Probab=99.64  E-value=1.7e-17  Score=154.62  Aligned_cols=85  Identities=18%  Similarity=0.284  Sum_probs=72.4

Q ss_pred             eeEeeCCeeEEEEEcC------------CCcEEEEeecCCCCCCCCCCCcc-----------cceeEEccccCeEEcCC-
Q 015956          233 VPFDCFEEPWVIFRGK------------DGIPGCVQNTCAHRACPLHLGSV-----------NEGRIQCPYHGWEYSTD-  288 (397)
Q Consensus       233 ~~v~i~G~~IVV~R~~------------dG~i~A~~N~CPHRGa~Ls~G~v-----------~~~~L~CPyHGW~Fd~d-  288 (397)
                      +.+++.+..++++|..            +|+++|+.|+|||+||+|+.|.+           .++.|.||||||+||.+ 
T Consensus        56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t  135 (204)
T 1jm1_A           56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD  135 (204)
T ss_dssp             CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred             ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence            5677788888888865            79999999999999999998853           56799999999999986 


Q ss_pred             -CccccCCCcccccCCccccceEEE--cCEEEEeCC
Q 015956          289 -GKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIWPG  321 (397)
Q Consensus       289 -G~~~~vP~~~~~~~~L~~ypV~e~--~G~IwV~l~  321 (397)
                       |+++..|+.    ..|+.|++.++  +|.||+...
T Consensus       136 GG~v~~gPa~----~~L~~~~v~v~~~~g~v~v~g~  167 (204)
T 1jm1_A          136 GGVVVSGPAP----RPLPIVILDYDSSTGDIYAVGT  167 (204)
T ss_dssp             TSEEEESSCC----SCCCBEEEEECTTTCEEEEEEE
T ss_pred             CCeEecCCCC----CCCCeEeeEEEecCCEEEEEeC
Confidence             699998874    36899999987  899999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	397
d1z01a1	148	b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-m	4e-26
d2de6a1	142	b.33.1.2 (A:1-142) Terminal oxygenase component of	7e-26
d1vm9a_	109	b.33.1.1 (A:) Toluene-4-monooxygenase system prote	2e-18
d1fqta_	109	b.33.1.1 (A:) Rieske-type ferredoxin associated wi	2e-18
d1rfsa_	127	b.33.1.1 (A:) ISP subunit from chloroplast cytochr	1e-16
d2jzaa1	122	b.33.1.3 (A:1-122) NADH-nitrite reductase small su	1e-14
d2jo6a1	108	b.33.1.3 (A:1-108) NADH-nitrite reductase small su	3e-13
d2e74d1	134	b.33.1.1 (D:46-179) ISP subunit from the cytochrom	9e-13
d3c0da1	108	b.33.1.3 (A:4-111) NADH-nitrite reductase small su	5e-12
d1ulia1	154	b.33.1.2 (A:17-170) Biphenyl dioxygenase large sub	1e-11
d2bmoa1	150	b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha	1e-09
d1g8kb_	133	b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alc	2e-09
d1nyka_	156	b.33.1.1 (A:) Soluble Rieske protein {Thermus ther	2e-08
d2b1xa1	162	b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alp	4e-08
d1jm1a_	202	b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon S	0.001
d1riea_	127	b.33.1.1 (A:) ISP subunit of the mitochondrial cyt	0.002

>d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Length = 148

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO
species: Pseudomonas putida [TaxId: 303]

 Score =  100 bits (250), Expect = 4e-26
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 12/134 (8%)

Query: 208 QPY---NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC 264
           QPY        N W+P  F+ +L++D +        P V+ R  +G    +++ C HR  
Sbjct: 16  QPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLHRGV 74

Query: 265 PLHLG--SVNEGRIQCPYHGWEYSTDGKCEKMPSTQ-----LRNVKIKSLPCFEQEGMIW 317
            L        +  I C YHG+ +  +               +    + + P  E  GMI+
Sbjct: 75  RLSEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIF 134

Query: 318 IWPG-DEPPTATIP 330
           ++   D+ P   +P
Sbjct: 135 VFVREDDFPDEDVP 148

>d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Length = 142

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Terminal oxygenase component of carbazole CarAa
species: Janthinobacterium sp. j3 [TaxId: 213804]

 Score = 99.8 bits (248), Expect = 7e-26
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 11/135 (8%)

Query: 201 LNVSGPVQPY---NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQN 257
           L       PY       +N W+PV FS ++ +          E  ++ R  DG   C+++
Sbjct: 9   LKRVKGWAPYVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNR-IDGKLYCLKD 67

Query: 258 TCAHRACPLHLG--SVNEGRIQCPYHGWEYS-TDGKCEKMP----STQLRNVKIKSLPCF 310
            C HR   L +      +  I C YH W Y   DG    +     S Q+   K+K+ P  
Sbjct: 68  RCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQ 127

Query: 311 EQEGMIWIWPGDEPP 325
           E +G ++I+ GD  P
Sbjct: 128 EAKGCVFIYLGDGDP 142

>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Length = 109

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Toluene-4-monooxygenase system protein C, TmoC
species: Pseudomonas mendocina [TaxId: 300]

 Score = 78.1 bits (192), Expect = 2e-18
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFE-EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRI 276
           +  +    D+    M  F+  +    +I   ++      Q  C H+   L  GS   G I
Sbjct: 2   FEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVI 61

Query: 277 QCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325
            C  H W ++   G           +  +   P   +   I++      P
Sbjct: 62  TCRAHLWTFNDGTGHGINPD-----DAALAEYPVEVKGDDIYVSTKGILP 106

>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Length = 109

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Rieske-type ferredoxin associated with biphenyl dioxygenase
species: Burkholderia cepacia [TaxId: 292]

 Score = 78.2 bits (192), Expect = 2e-18
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277
           +  V    D+ +   +  +       IF   DG     Q+ C H    L  G   EG + 
Sbjct: 3   FTRVCDRRDVPEGEALKVESGGTSVAIFN-VDGELFATQDRCTHGDWSLSDGGYLEGDVV 61

Query: 278 C-PYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIW--PGDEPP 325
               H  ++    GK +  P  +     +K  P   ++  + +    G   P
Sbjct: 62  ECSLHMGKFCVRTGKVKSPPPCE----ALKIFPIRIEDNDVLVDFEAGYLAP 109

>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 127

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit from chloroplast cytochrome bf complex
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 73.5 bits (180), Expect = 1e-16
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 243 VIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNV 302
           V+   K      +   C H  C +   +  E +  CP HG +Y+  G+  + P+      
Sbjct: 39  VVESDKTLATFGINAVCTHLGCVVPFNAA-ENKFICPCHGSQYNNQGRVVRGPAPL---- 93

Query: 303 KIKSLPCFEQEGMIWIWPGDEPPTAT 328
            +    C   +G +   P  E    T
Sbjct: 94  SLALAHCDVDDGKVVFVPWTETDFRT 119

>d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} Length = 122

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Erwinia carotovora [TaxId: 554]

 Score = 67.7 bits (164), Expect = 1e-14
 Identities = 13/114 (11%), Positives = 27/114 (23%), Gaps = 10/114 (8%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK-DGIPGCVQNTCAHRACPLH-----LGSV 271
           W  V    D+   T V     ++   +FR + D     + N        +          
Sbjct: 4   WTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQ 63

Query: 272 NEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325
           ++  +  P     +                  + +       G + I   D   
Sbjct: 64  DDLWVASPLKKQHFRLYDGFCLED----GAYSVAAYDTQVTNGNVQISIADSDV 113

>d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} Length = 108

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Escherichia coli [TaxId: 562]

 Score = 63.6 bits (154), Expect = 3e-13
 Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 12/108 (11%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFR-GKDGIPGCVQNTCAHRACPL-----HLGSV 271
           W  +    D+  +T V     +E   IFR         + N        +          
Sbjct: 4   WKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQ 63

Query: 272 NEGRIQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 318
            E  +  P     +  +DG C +          +K      ++G++ +
Sbjct: 64  GELWVASPLKKQRFRLSDGLCMEDEQ-----FSVKHYEARVKDGVVQL 106

>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} Length = 134

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit from the cytochrome b6f complex, soluble domain
species: Mastigocladus laminosus [TaxId: 83541]

 Score = 62.8 bits (152), Expect = 9e-13
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 229 DDTMVPFDCFEEPWVI-FRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST 287
           D  +V     +  +++    +      +   C H  C +   +  E + +CP HG +Y  
Sbjct: 32  DRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDE 90

Query: 288 DGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPTAT 328
            GK  + P+       +       Q+  I + P  E    T
Sbjct: 91  TGKVIRGPAPL----SLALCHATVQDDNIVLTPWTETDFRT 127

>d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} Length = 108

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 60.2 bits (145), Expect = 5e-12
 Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 11/111 (9%)

Query: 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-----N 272
              +    DL            E   +F   D     VQ+        +    +      
Sbjct: 3   KVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDING 62

Query: 273 EGRIQCPYHGWEYS-TDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGD 322
           E  +  P +   +S   G+C +  +       +K+      +  +     +
Sbjct: 63  EMCVASPLYKQHFSLKSGQCLEDEA-----HCLKTWRVTVDDNQVCYLAKE 108

>d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} Length = 154

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

 Score = 59.8 bits (144), Expect = 1e-11
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 9/118 (7%)

Query: 215 KNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLH-LGSVN 272
              W  +   T +      +     E+P ++ R K+G      N C HR   +      N
Sbjct: 37  GRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGGN 96

Query: 273 EGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDE 323
                C YHGW Y T G    +P  +         +           +G+I+     +
Sbjct: 97  AKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDAD 154

>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} Length = 150

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Nitrobenzene dioxygenase alpha subunit, NBDO-alpha
species: Comamonas sp. JS765 [TaxId: 58226]

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 11/116 (9%)

Query: 215 KNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
              W  +   + +      V      +  ++ R  DG      N C HR   L       
Sbjct: 32  ARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGN 91

Query: 274 G-RIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLPCFEQ-EGMIWIW 319
                C YHGW Y ++G+ + +P  +         + + +K +P  E   G I+  
Sbjct: 92  AKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGC 147

>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} Length = 133

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Arsenite oxidase Rieske subunit
species: Alcaligenes faecalis [TaxId: 511]

 Score = 53.1 bits (127), Expect = 2e-09
 Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 21/123 (17%)

Query: 220 PVAFSTDLKDDTMVPF-------DCF----EEPWVIFRGKDGIPGCVQNTCAHRACPLHL 268
            V+ + +L  +  V F        C       P     G D         C H  CP   
Sbjct: 10  AVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSY 69

Query: 269 GSVNEGRIQCPYHGWEYS--TDGKCEKMPSTQ-LRNVKIK------SLPCFEQEGMIWIW 319
              +     CP H  E+     G+     +T  L  V ++      +L     +G+I+  
Sbjct: 70  D-SSSKTFSCPCHFTEFDAEKAGQMICGEATADLPRVLLRYDAASDALTAVGVDGLIYGR 128

Query: 320 PGD 322
             +
Sbjct: 129 QAN 131

>d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} Length = 156

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Soluble Rieske protein
species: Thermus thermophilus [TaxId: 274]

 Score = 51.2 bits (122), Expect = 2e-08
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 8/90 (8%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY--STDGKCEKMPS 296
             P V     +G+       C H  C +     +E    CP HG  Y      +    P 
Sbjct: 68  LAPEVAQHAAEGVV-AYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPP 126

Query: 297 TQLRNVKIKSLPCFEQEGMIWIW-PGDEPP 325
            +     +  LP   ++G++        P 
Sbjct: 127 PR----PVPQLPVRVEDGVLVAAGEFLGPV 152

>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} Length = 162

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Naphthalene 1,2-dioxygenase alpha subunit, N-domain
species: Rhodococcus sp. ncimb12038 [TaxId: 92694]

 Score = 50.2 bits (119), Expect = 4e-08
 Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 11/116 (9%)

Query: 215 KNFWFPVAFSTDLKDDT-MVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE 273
            + W  +A  +++ +    V     E+ +++ R + G      N C HR   +    +  
Sbjct: 43  GHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMGN 102

Query: 274 GR-IQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLPCFEQ-EGMIWIW 319
               +CPYHGW YS  G    +P+ +          +  ++ +P     +G+I+  
Sbjct: 103 TSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGS 158

>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 202

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Rieske protein II (SoxF)
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 13/73 (17%)

Query: 239 EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN-----------EGRIQCPYHGWEY-- 285
           +   +   G +G      + C H  C L    +               + CP HG  Y  
Sbjct: 72  QIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYAL 131

Query: 286 STDGKCEKMPSTQ 298
              G     P+ +
Sbjct: 132 KDGGVVVSGPAPR 144

>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} Length = 127

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 12/45 (26%), Positives = 17/45 (37%)

Query: 254 CVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 298
            +   C H  C     + + G   CP HG  Y   G+  K P+  
Sbjct: 65  ILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPL 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	397
d2de6a1	142	Terminal oxygenase component of carbazole CarAa {J	99.96
d1ulia1	154	Biphenyl dioxygenase large subunit BphA1, N-termin	99.96
d2bmoa1	150	Nitrobenzene dioxygenase alpha subunit, NBDO-alpha	99.96
d2b1xa1	162	Naphthalene 1,2-dioxygenase alpha subunit, N-domai	99.95
d1z01a1	148	2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen	99.95
d1vm9a_	109	Toluene-4-monooxygenase system protein C, TmoC {Ps	99.93
d2jzaa1	122	NADH-nitrite reductase small subunit NirD {Erwinia	99.92
d2jo6a1	108	NADH-nitrite reductase small subunit NirD {Escheri	99.91
d1fqta_	109	Rieske-type ferredoxin associated with biphenyl di	99.91
d3c0da1	108	NADH-nitrite reductase small subunit NirD {Vibrio	99.9
d1rfsa_	127	ISP subunit from chloroplast cytochrome bf complex	99.76
d1g8kb_	133	Arsenite oxidase Rieske subunit {Alcaligenes faeca	99.73
d2e74d1	134	ISP subunit from the cytochrome b6f complex, solub	99.69
d1nyka_	156	Soluble Rieske protein {Thermus thermophilus [TaxI	99.59
d3cx5e1	129	ISP subunit of the mitochondrial cytochrome bc1-co	99.41
d1riea_	127	ISP subunit of the mitochondrial cytochrome bc1-co	99.34
d1jm1a_	202	Rieske protein II (SoxF) {Archaeon Sulfolobus acid	99.04
d1z01a2	279	2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen	97.4
d2bmoa2	287	Nitrobenzene dioxygenase alpha subunit, NBDO-alpha	97.34
d2b1xa2	279	Naphthalene 1,2-dioxygenase alpha subunit, C-domai	97.28
d1ulia2	281	Biphenyl dioxygenase large subunit BphA1, C-termin	96.92
d1wqla2	279	Large subunit of cumene dioxygenase cumA1 {Pseudom	96.41
d2de6a2	242	Terminal oxygenase component of carbazole CarAa {J	90.11

>d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Terminal oxygenase component of carbazole CarAa
species: Janthinobacterium sp. j3 [TaxId: 213804]

Probab=99.96  E-value=6.9e-30  Score=222.28  Aligned_cols=113  Identities=28%  Similarity=0.602  Sum_probs=100.2

Q ss_pred             hhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc--ccceeEEccccCeEEcC-C
Q 015956          212 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-D  288 (397)
Q Consensus       212 ~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~--v~~~~L~CPyHGW~Fd~-d  288 (397)
                      ..|++.|++||+++||++|+++.+++.|++|+|+|. +|+++||.|+|||||++|+.|.  ..++.|+||||||+||+ +
T Consensus        23 ~~f~~~W~~v~~~~el~~g~~~~~~i~g~~ivv~r~-~g~v~a~~n~CpHrga~L~~g~~~~~~~~i~Cp~Hgw~fdl~~  101 (142)
T d2de6a1          23 LGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI-DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWED  101 (142)
T ss_dssp             TCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETTT
T ss_pred             cCCcccCEEEEEHHHCCCCCeEEEEECCEEEEEEEc-CCEEEEEeCccCCCCccCCccccccccCEEeccceeeEEeccC
Confidence            368999999999999999999999999999999995 8999999999999999999775  34568999999999996 8


Q ss_pred             CccccCCCccc----ccCCccccceEEEcCEEEEeCCCCCC
Q 015956          289 GKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPP  325 (397)
Q Consensus       289 G~~~~vP~~~~----~~~~L~~ypV~e~~G~IwV~l~~~~p  325 (397)
                      |.|+..|..+.    .+.+|++|||++++|+|||++++.+|
T Consensus       102 G~~~~~p~~~~~~~~~~~~l~~y~v~e~~G~I~v~l~d~~P  142 (142)
T d2de6a1         102 GVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDP  142 (142)
T ss_dssp             CBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSSC
T ss_pred             CceEecCCCcccCCccccCCCEEeEEEECCEEEEEeCCCCC
Confidence            99999887542    23579999999999999999986543

>d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

Probab=99.96  E-value=9.3e-30  Score=225.32  Aligned_cols=114  Identities=20%  Similarity=0.354  Sum_probs=102.0

Q ss_pred             CcchhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc-ccceeEEccccCeEEc
Q 015956          209 PYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYS  286 (397)
Q Consensus       209 ~~~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~-v~~~~L~CPyHGW~Fd  286 (397)
                      .+..+|++.|++||++++|+ +|+++++++++++++|+|+.+|+++||.|+|||||++|..+. ++++.|+||||||+||
T Consensus        31 E~~~if~~~W~~v~~~~el~~~g~~~~~~i~~~~ilv~R~~~g~i~af~N~C~HRG~~L~~~~~g~~~~l~CpYHgW~f~  110 (154)
T d1ulia1          31 ELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYD  110 (154)
T ss_dssp             HHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSEEECSCEECTTTCCEEC
T ss_pred             HHHHHhccCCEEEEEhhhCCCCcceeeeecCCcceeEEeecccceeeeecccccCCceeeecCCCccceEEeeeceeEEe
Confidence            34567899999999999997 699999999999999999999999999999999999999754 5677899999999999


Q ss_pred             CCCccccCCCccc-------ccCCccccceEEEcCEEEEeCCC
Q 015956          287 TDGKCEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGD  322 (397)
Q Consensus       287 ~dG~~~~vP~~~~-------~~~~L~~ypV~e~~G~IwV~l~~  322 (397)
                      .+|+|+.+|..+.       ...+|++++|.+++|+|||++++
T Consensus       111 ~~G~~~~iP~~~~~~~~~~~~~~~L~~~~v~~~~G~Ifv~~d~  153 (154)
T d1ulia1         111 TGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDA  153 (154)
T ss_dssp             TTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCT
T ss_pred             cCCccccCCcccccCCCCChHHCCCeEEeEEEECCEEEEEeCC
Confidence            9999999996532       23678999999999999999964

>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Nitrobenzene dioxygenase alpha subunit, NBDO-alpha
species: Comamonas sp. JS765 [TaxId: 58226]

Probab=99.96  E-value=2.4e-29  Score=222.12  Aligned_cols=113  Identities=21%  Similarity=0.388  Sum_probs=101.3

Q ss_pred             cchhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cceeEEccccCeEEcC
Q 015956          210 YNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYST  287 (397)
Q Consensus       210 ~~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v-~~~~L~CPyHGW~Fd~  287 (397)
                      +..+|.+.|++||+++||+ +|+++++++++++++|+|+.||+++||.|+|||||++|..|.. ..+.|+||||||+||.
T Consensus        27 ~~~if~~~W~~v~~~~elp~~Gd~~~~~i~~~~~vv~R~~dg~i~af~N~C~HRG~~L~~~~~g~~~~i~CpYHgW~yd~  106 (150)
T d2bmoa1          27 LKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGS  106 (150)
T ss_dssp             HHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBCCCSSEEECSEEECTTTCCEEET
T ss_pred             HHHHHHcCCeEeehHHHcCCCcceeeeeecCceeEEEecCCCchhhhhhhcccccccccccccccccceEecccceeecc
Confidence            3457889999999999997 6999999999999999999999999999999999999999874 6789999999999999


Q ss_pred             CCccccCCCccc--------ccCCccccc-eEEEcCEEEEeCCC
Q 015956          288 DGKCEKMPSTQL--------RNVKIKSLP-CFEQEGMIWIWPGD  322 (397)
Q Consensus       288 dG~~~~vP~~~~--------~~~~L~~yp-V~e~~G~IwV~l~~  322 (397)
                      +|+|+.+|..+.        ...+|.++| |++++|+|||++++
T Consensus       107 ~G~l~~~P~~~~~~~~~~~~~~~~L~~~~~ve~~~G~Ifv~lda  150 (150)
T d2bmoa1         107 NGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDA  150 (150)
T ss_dssp             TSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCT
T ss_pred             ccchhcCCCccccCCCCCChhhCCCcccceEEEECCEEEEecCC
Confidence            999999997432        246789998 78889999999863

>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Naphthalene 1,2-dioxygenase alpha subunit, N-domain
species: Rhodococcus sp. ncimb12038 [TaxId: 92694]

Probab=99.95  E-value=8e-29  Score=221.06  Aligned_cols=112  Identities=21%  Similarity=0.437  Sum_probs=99.2

Q ss_pred             chhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc-ccceeEEccccCeEEcCC
Q 015956          211 NTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTD  288 (397)
Q Consensus       211 ~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~-v~~~~L~CPyHGW~Fd~d  288 (397)
                      ..+|.+.|++||+++||+ +|++++++++|++++|+|+.||+++||.|+|||||++|..+. +.++.|+||||||+||.+
T Consensus        39 ~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~~vv~R~~dG~i~a~~N~C~HRG~~l~~~~~g~~~~i~CpYHgW~yd~~  118 (162)
T d2b1xa1          39 ERIFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNT  118 (162)
T ss_dssp             HHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCSSEEECSEEECTTTCCEEETT
T ss_pred             HHHHcCCCEEEEEHHHcCCccceeeEeecCCceEEEecCCcceEEeecccccCcccccccccCccccccCCCceeEEcCC
Confidence            346788999999999997 799999999999999999999999999999999999999775 467789999999999999


Q ss_pred             CccccCCCccc--------ccCCccccc-eEEEcCEEEEeCCC
Q 015956          289 GKCEKMPSTQL--------RNVKIKSLP-CFEQEGMIWIWPGD  322 (397)
Q Consensus       289 G~~~~vP~~~~--------~~~~L~~yp-V~e~~G~IwV~l~~  322 (397)
                      |+|+++|..+.        .+.+|++++ |++++|+|||++++
T Consensus       119 G~l~~~P~~~~~~~~~~~~~~~~L~~~~~v~~~~GlIfv~ldP  161 (162)
T d2b1xa1         119 GSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDP  161 (162)
T ss_dssp             SCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCT
T ss_pred             CCeEECCCcccCCCCCCChhhcCCeeeeeEEEECCEEEEEcCC
Confidence            99999997542        134778886 88899999999964

>d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO
species: Pseudomonas putida [TaxId: 303]

Probab=99.95  E-value=4.9e-29  Score=218.25  Aligned_cols=111  Identities=23%  Similarity=0.522  Sum_probs=98.6

Q ss_pred             hcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc--ccceeEEccccCeEEcC-CC
Q 015956          213 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-DG  289 (397)
Q Consensus       213 ~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~--v~~~~L~CPyHGW~Fd~-dG  289 (397)
                      .|.|.|++||+++||++|+++.++++|++|+|+| .+|+++||.|+|||||++|+.|.  +.++.|+||||||+||+ +|
T Consensus        24 ~~~~~W~~v~~~~el~~g~~~~~~i~g~~vvl~~-~~g~i~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~fd~~~G  102 (148)
T d1z01a1          24 GFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETG  102 (148)
T ss_dssp             CBCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCCCSSTTEEECTTTCEEEETTTC
T ss_pred             CcccccEEEEEHHHCCCCCeEEEEECCEEEEEEE-ECCEEEEEEeecCccccEeEccccccccCEEEecccCCEEecCcc
Confidence            5889999999999999999999999999998877 69999999999999999999875  45679999999999997 69


Q ss_pred             ccccCCCccc----ccCCccccceEEEcCEEEEeCCCCC
Q 015956          290 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP  324 (397)
Q Consensus       290 ~~~~vP~~~~----~~~~L~~ypV~e~~G~IwV~l~~~~  324 (397)
                      .|..+|....    ...+|++|||++++|+|||++++++
T Consensus       103 ~~~~~p~~~~~~~~~~~~l~~y~v~~~~g~I~v~l~~~~  141 (148)
T d1z01a1         103 KLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVREDD  141 (148)
T ss_dssp             BEEEETTCTTCTTTTSCBCCEECEEEETTEEEEEECCTT
T ss_pred             eEecccccccccCCccCCcceEEEEEECCEEEEEeCCCC
Confidence            9998887542    2467999999999999999997654

>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Toluene-4-monooxygenase system protein C, TmoC
species: Pseudomonas mendocina [TaxId: 300]

Probab=99.93  E-value=6.2e-26  Score=188.67  Aligned_cols=105  Identities=18%  Similarity=0.256  Sum_probs=95.3

Q ss_pred             ceEEeeecCCCCCCCceeEeeC-CeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccC
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM  294 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~-G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~v  294 (397)
                      .|..||.++||++|+.+.+++. |++++|+|..+|+++|+.|+|||+|++|+.|.++++.|+||||||+||+ +|+|+..
T Consensus         1 ~w~~vc~~~dl~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~~~~~i~Cp~Hg~~F~l~~G~~~~p   80 (109)
T d1vm9a_           1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGINP   80 (109)
T ss_dssp             CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSSS
T ss_pred             CeeEEEEHHHCCCCCeEEEEecCCeEEEEEEeCCCeEEEEEeeCCCCCccceeEeccCCEEEcccCCceEECCCccCCCC
Confidence            4999999999999999999985 7999999988999999999999999999999999999999999999996 8999875


Q ss_pred             CCcccccCCccccceEEEcCEEEEeCCCCCCC
Q 015956          295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPPT  326 (397)
Q Consensus       295 P~~~~~~~~L~~ypV~e~~G~IwV~l~~~~p~  326 (397)
                      |.     .+|++|||++++|.|||.+++..|+
T Consensus        81 ~~-----~~L~~~~v~v~~g~v~V~~~~~~P~  107 (109)
T d1vm9a_          81 DD-----AALAEYPVEVKGDDIYVSTKGILPN  107 (109)
T ss_dssp             SS-----CBCCEECEEEETTEEEECCTTCCCC
T ss_pred             CC-----CCccEEeEEEECCEEEEEeCCCCCC
Confidence            54     3799999999999999998665543

>d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Erwinia carotovora [TaxId: 554]

Probab=99.92  E-value=1.6e-25  Score=190.16  Aligned_cols=104  Identities=18%  Similarity=0.179  Sum_probs=93.3

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEc-CCCcEEEEeecCCCCCCC-CCCCcc----cceeEEccccCeEEcC-CC
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACP-LHLGSV----NEGRIQCPYHGWEYST-DG  289 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~-~dG~i~A~~N~CPHRGa~-Ls~G~v----~~~~L~CPyHGW~Fd~-dG  289 (397)
                      .|+.||.++||++|+.+.+.+.|++++|+|. .+|+++|+.|.|||+|++ |+.|.+    ++..|+||||||+||. +|
T Consensus         3 ~W~~Vc~~~dl~~g~~~~v~v~g~~v~l~~~~~~g~v~A~~~~CpH~g~~ll~~G~v~~~~~~~~i~Cp~Hg~~F~l~tG   82 (122)
T d2jzaa1           3 QWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDG   82 (122)
T ss_dssp             SEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTC
T ss_pred             CcEEEEEHHHcCCCCeEEEEECCEEEEEEEEcCCCEEEEEecCCCcccccccccceeeeccCCCEEECCCCCCeeecccc
Confidence            5999999999999999999999999999994 479999999999999998 677765    3457999999999995 89


Q ss_pred             ccccCCCcccccCCccccceEEEcCEEEEeCCCCCC
Q 015956          290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP  325 (397)
Q Consensus       290 ~~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l~~~~p  325 (397)
                      +|+..|..     +|++|||++++|.|||++.+.++
T Consensus        83 ~~~~~p~~-----~l~~~~v~v~~g~V~v~~~~~~~  113 (122)
T d2jzaa1          83 FCLEDGAY-----SVAAYDTQVTNGNVQISIADSDV  113 (122)
T ss_dssp             CBSSCCSS-----CCBCCCEEESSSEEEEECCCCCC
T ss_pred             eeeecccc-----CCCccceEEECCEEEEEeCCcCc
Confidence            99999874     79999999999999999976543

>d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=4.2e-25  Score=183.48  Aligned_cols=98  Identities=18%  Similarity=0.193  Sum_probs=88.5

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEE-cCCCcEEEEeecCCCCCCC-CCCCccc----ceeEEccccCeEEcC-CC
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFR-GKDGIPGCVQNTCAHRACP-LHLGSVN----EGRIQCPYHGWEYST-DG  289 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R-~~dG~i~A~~N~CPHRGa~-Ls~G~v~----~~~L~CPyHGW~Fd~-dG  289 (397)
                      .|++||.++||++|+++.+.++|++++|+| ..+|+++|+.|.|||+|++ |+.|.+.    +..|+||||||+||. ||
T Consensus         3 ~W~~vc~~~dl~~g~~~~~~~~g~~i~l~r~~~~g~v~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~F~l~tG   82 (108)
T d2jo6a1           3 QWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDG   82 (108)
T ss_dssp             CCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTT
T ss_pred             CCEEEeEHHHCCCCCeEEEEECCEEEEEEEECcCCEEEEEECcCCCCCCccccceeEeccccCCEEECCCCCceEECCCc
Confidence            699999999999999999999999999999 4689999999999999998 6677653    346999999999995 99


Q ss_pred             ccccCCCcccccCCccccceEEEcCEEEEe
Q 015956          290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIW  319 (397)
Q Consensus       290 ~~~~vP~~~~~~~~L~~ypV~e~~G~IwV~  319 (397)
                      +|+..|..     +|++|||++++|.|||.
T Consensus        83 ~~~~~p~~-----~l~~y~v~v~~g~V~V~  107 (108)
T d2jo6a1          83 LCMEDEQF-----SVKHYEARVKDGVVQLR  107 (108)
T ss_dssp             EETTTTTT-----CCCEEEEEEETTEEEEE
T ss_pred             cCCCCCCC-----cccEEeEEEECCEEEEe
Confidence            99998864     79999999999999985

>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Rieske-type ferredoxin associated with biphenyl dioxygenase
species: Burkholderia cepacia [TaxId: 292]

Probab=99.91  E-value=2.5e-24  Score=179.04  Aligned_cols=102  Identities=18%  Similarity=0.250  Sum_probs=93.7

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc-ccceeEEccccCeEEcC-CCccccC
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYST-DGKCEKM  294 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~-v~~~~L~CPyHGW~Fd~-dG~~~~v  294 (397)
                      .|+.||.++||++|+.+.+++.|.+++|+|. +|+++|+.|+|||+|++|..|. +.++.|+||||||+||. +|+|+..
T Consensus         2 ~w~~v~~~~dl~~g~~~~~~~~~~~i~v~r~-~~~~~A~~~~CpH~g~~l~~g~~~~~~~i~Cp~H~~~F~l~tG~~~~~   80 (109)
T d1fqta_           2 KFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSP   80 (109)
T ss_dssp             CCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEES
T ss_pred             cEEEeeEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEEeeccccCcccccceeecCCEEEccccCCEEECCCccCccC
Confidence            5999999999999999999999999999995 7899999999999999999764 56789999999999995 9999999


Q ss_pred             CCcccccCCccccceEEEcCEEEEeCCCC
Q 015956          295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE  323 (397)
Q Consensus       295 P~~~~~~~~L~~ypV~e~~G~IwV~l~~~  323 (397)
                      |..    .+|++||+++++|.|||+++++
T Consensus        81 p~~----~~l~~~~v~~~~g~i~v~~~~~  105 (109)
T d1fqta_          81 PPC----EALKIFPIRIEDNDVLVDFEAG  105 (109)
T ss_dssp             SCC----SCCCBCCEEEETTEEEECTTCC
T ss_pred             CCC----CCCCEEeEEEECCEEEEEeCCC
Confidence            885    3799999999999999998754

>d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: NirD-like
domain: NADH-nitrite reductase small subunit NirD
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.90  E-value=1.5e-24  Score=180.08  Aligned_cols=100  Identities=13%  Similarity=0.009  Sum_probs=89.4

Q ss_pred             ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-----cceeEEccccCeEEcC-CCc
Q 015956          217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-----NEGRIQCPYHGWEYST-DGK  290 (397)
Q Consensus       217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v-----~~~~L~CPyHGW~Fd~-dG~  290 (397)
                      .|+.||.++||++|+.+.+.+.|++++|+|..+|+++|++|+|||+|++|..+..     .+..|+||||||+||. +|+
T Consensus         2 ~~v~vc~~~dl~~g~~~~~~~~g~~i~v~r~~~g~~~A~~~~CpH~g~~L~~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~   81 (108)
T d3c0da1           2 TKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSGQ   81 (108)
T ss_dssp             CEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTCB
T ss_pred             CcEEEEEHHHCCCCCEEEEEECCEEEEEEEeCCCCEEEEEccCCCCCcccccccEEEecCCceEEeccccccEEeccCCc
Confidence            5899999999999999999999999999998899999999999999999875432     2346999999999995 999


Q ss_pred             cccCCCcccccCCccccceEEEcCEEEEeCC
Q 015956          291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG  321 (397)
Q Consensus       291 ~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l~  321 (397)
                      |+..|..     +|++|||++++|.|||...
T Consensus        82 ~~~~p~~-----~l~~y~v~v~~g~V~V~~~  107 (108)
T d3c0da1          82 CLEDEAH-----CLKTWRVTVDDNQVCYLAK  107 (108)
T ss_dssp             BSSCTTC-----BCCEECEEESSSEEEEECC
T ss_pred             cccCCCC-----cccEEeEEEECCEEEEEec
Confidence            9988864     6999999999999999753

>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit from chloroplast cytochrome bf complex
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.76  E-value=1.9e-19  Score=154.29  Aligned_cols=95  Identities=18%  Similarity=0.337  Sum_probs=77.1

Q ss_pred             cCCCCCCCceeEe-eCCeeEEEEEc--CCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCCCcccc
Q 015956          224 STDLKDDTMVPFD-CFEEPWVIFRG--KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR  300 (397)
Q Consensus       224 ssdL~~G~~~~v~-i~G~~IVV~R~--~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~  300 (397)
                      ..+.++|+...+. +.|+++++++.  .+|+++||+|+|||+||+|..|.. ++.|+||||||+||.+|+|+.+|+.   
T Consensus        17 l~~~~~G~~~l~~~~~g~~~~lvv~~d~~~~v~A~~~~C~H~g~~l~~~~~-~~~~~Cp~Hg~~Fd~~G~~~~~Pa~---   92 (127)
T d1rfsa_          17 LKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAA-ENKFICPCHGSQYNNQGRVVRGPAP---   92 (127)
T ss_dssp             HHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEETT-TTEEECTTTCCEEETTCCEEESSCC---
T ss_pred             ecccCCCcceeeeeecCCceEEEEEeCCCCEEEEEcCCCCCCCCCccCccc-CCeEEcCCCCeEECCCCCCCcCCCC---
Confidence            3556677654443 56777666654  445899999999999999998864 4689999999999999999999985   


Q ss_pred             cCCccccceEEEcCEEEEeCCCC
Q 015956          301 NVKIKSLPCFEQEGMIWIWPGDE  323 (397)
Q Consensus       301 ~~~L~~ypV~e~~G~IwV~l~~~  323 (397)
                       ..|++|++++++|.|||....+
T Consensus        93 -~~L~~~~v~v~~g~i~v~~~~~  114 (127)
T d1rfsa_          93 -LSLALAHCDVDDGKVVFVPWTE  114 (127)
T ss_dssp             -SCCCEEEEEEETTEEEEEECCS
T ss_pred             -CCcceEeEEEECCEEEEEcCCc
Confidence             4899999999999999987544

>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Arsenite oxidase Rieske subunit
species: Alcaligenes faecalis [TaxId: 511]

Probab=99.73  E-value=9.3e-19  Score=151.12  Aligned_cols=89  Identities=20%  Similarity=0.294  Sum_probs=77.5

Q ss_pred             EeeecCCCCCCCceeEee--CCeeEEEEEc---------CCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-
Q 015956          220 PVAFSTDLKDDTMVPFDC--FEEPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-  287 (397)
Q Consensus       220 ~Va~ssdL~~G~~~~v~i--~G~~IVV~R~---------~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-  287 (397)
                      .|+.+++|++|+++.|.+  .+.+.+++|.         .||+++||+|+|||+|++|+.+. .++.|+||||||+||. 
T Consensus        10 ~v~~~~~l~~~~p~~f~yp~~~~p~~lVr~g~~v~~~~g~~g~i~A~~~~CpH~g~~l~~~~-~~~~i~Cp~Hg~~Fd~~   88 (133)
T d1g8kb_          10 AVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYDS-SSKTFSCPCHFTEFDAE   88 (133)
T ss_dssp             EEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEET-TTTEEECTTTCCEEEGG
T ss_pred             heEEHHHCCCCCCEEEeccCCCCCEEEEEcCCceeEEECCCCEEEEEehhcCCCCcccccCc-ccCEEECCCCCeEEecC
Confidence            899999999999999886  7789999984         46899999999999999999775 4578999999999995 


Q ss_pred             -CCccccCCCcccccCCccccceEEEc
Q 015956          288 -DGKCEKMPSTQLRNVKIKSLPCFEQE  313 (397)
Q Consensus       288 -dG~~~~vP~~~~~~~~L~~ypV~e~~  313 (397)
                       +|+++..|..    ..|+.|++++++
T Consensus        89 ~~G~~~~gPa~----~~L~~~~v~ve~  111 (133)
T d1g8kb_          89 KAGQMICGEAT----ADLPRVLLRYDA  111 (133)
T ss_dssp             GTTEEEESSCS----SCCCEEEEEEET
T ss_pred             CCceEeCCCCC----CCCCeEeEEEEC
Confidence             6999999985    368888888764

>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit from the cytochrome b6f complex, soluble domain
species: Mastigocladus laminosus [TaxId: 83541]

Probab=99.69  E-value=1.1e-17  Score=144.34  Aligned_cols=93  Identities=18%  Similarity=0.300  Sum_probs=71.4

Q ss_pred             CCCCCCCc-eeEeeCCee--EEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCCCccccc
Q 015956          225 TDLKDDTM-VPFDCFEEP--WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRN  301 (397)
Q Consensus       225 sdL~~G~~-~~v~i~G~~--IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~  301 (397)
                      +..++|+. ......+.+  +++.|+.+|+++||+|+|||+||+|..|.. ++.|+||||||+||.+|+++..|..    
T Consensus        26 ~~~~~g~~~l~~~~~g~~~~~~v~~~~~g~~~A~~~~C~H~G~~l~~g~~-~~~~~Cp~Hg~~Fd~~G~~~~gPa~----  100 (134)
T d2e74d1          26 ESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDETGKVIRGPAP----  100 (134)
T ss_dssp             HSSCSTTCEEEECGGGCEEEEC-----CCCSEEEECBCTTTCCBCCBCTT-TSCEEETTTTEEECSSSCBCSSSCC----
T ss_pred             cccCCCceEeeeecCCCceEEEEEeCCCCcEEEEeccccCCEEEcccccc-CCccCCCCCCcEECCCCCEEeCCCC----
Confidence            33444443 333345555  555577789999999999999999999874 4688999999999999999999984    


Q ss_pred             CCccccceEEEcCEEEEeCCC
Q 015956          302 VKIKSLPCFEQEGMIWIWPGD  322 (397)
Q Consensus       302 ~~L~~ypV~e~~G~IwV~l~~  322 (397)
                      ..|++|++++.+|.|||.+..
T Consensus       101 ~~L~~y~v~v~~~~i~V~p~~  121 (134)
T d2e74d1         101 LSLALCHATVQDDNIVLTPWT  121 (134)
T ss_dssp             SCCCEEEEECCTTSCEEEECC
T ss_pred             CCcceeeEEEECCEEEEeCCc
Confidence            479999999999999997654

>d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Soluble Rieske protein
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=9.5e-16  Score=135.08  Aligned_cols=68  Identities=19%  Similarity=0.295  Sum_probs=60.6

Q ss_pred             CcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC--CCccccCCCcccccCCccccceEEEcCEEEEeCC
Q 015956          250 GIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST--DGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG  321 (397)
Q Consensus       250 G~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~--dG~~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l~  321 (397)
                      +.++||+|+|||+||+|+.+...++.|.||||||+||.  +|+++..|..    ..|+.||+++++|.|||.-+
T Consensus        78 d~i~A~~~~CtH~g~~l~~~~~~~~~~~Cp~Hgs~FD~~~gg~v~~gPa~----~~L~~~~~~~~~g~i~v~~d  147 (156)
T d1nyka_          78 EGVVAYSAVCTHLGCIVSQWVADEEAALCPCHGGVYDLRHGAQVIAGPPP----RPVPQLPVRVEDGVLVAAGE  147 (156)
T ss_dssp             TTEEEEECBCTTTCCBCCEEEGGGTEEECTTTCCEEEGGGTTEEEESSCS----SCCCEECEEEETTEEEECSS
T ss_pred             CcEEEEcccCcccccccccccccCCeeeccccceEEecCCCceEeCCCCC----CCCCEEEEEEECCEEEEeec
Confidence            34899999999999999998888899999999999995  5888888874    48999999999999999643

>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=2.4e-13  Score=116.35  Aligned_cols=92  Identities=18%  Similarity=0.199  Sum_probs=80.8

Q ss_pred             ecCCCCCCCceeEeeCCeeEEEEEc--------------------------CCCcEEEEeecCCCCCCCCCCCcccceeE
Q 015956          223 FSTDLKDDTMVPFDCFEEPWVIFRG--------------------------KDGIPGCVQNTCAHRACPLHLGSVNEGRI  276 (397)
Q Consensus       223 ~ssdL~~G~~~~v~i~G~~IVV~R~--------------------------~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L  276 (397)
                      .+++|++|+.+.+..-|.|+.|+|.                          .++++.++...|+|.||.+.......+.|
T Consensus        11 Dis~l~pG~~~~V~WrGkPVfI~~Rt~e~i~~~~~~~~~~l~dp~~~~~r~~~~~~~v~~~~CtHlGC~~~~~~~~~~~~   90 (129)
T d3cx5e1          11 NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEAGDFGGW   90 (129)
T ss_dssp             EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEEEETTTTEE
T ss_pred             ehhhCCCCCeEEEEeCCceEEEEecCHHHhhhccccccccccccccchhccccccEEEEEeeccCcceeeeeccCcCCeE
Confidence            5788999999999999999988862                          35789999999999999988765555789


Q ss_pred             EccccCeEEcCCCccccCCCcccccCCccccceEEEcCEEEE
Q 015956          277 QCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI  318 (397)
Q Consensus       277 ~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e~~G~IwV  318 (397)
                      .|||||.+||.+|+.+..|+.    ..|..+|+.+.++-|.|
T Consensus        91 ~CPCHgs~fd~~G~v~~GPA~----~~L~~~~~~~~~~~i~i  128 (129)
T d3cx5e1          91 FCPCHGSHYDISGRIRKGPAP----LNLEIPAYEFDGDKVIV  128 (129)
T ss_dssp             EETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTEEEE
T ss_pred             EEcCcCCCCCCCCCEEeCCCC----CCCCCCcEEEECCEEEE
Confidence            999999999999999999984    58999999999988765

>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.34  E-value=1.7e-12  Score=110.62  Aligned_cols=91  Identities=19%  Similarity=0.303  Sum_probs=77.6

Q ss_pred             ecCCCCCCCceeEeeCCeeEEEEEc--------------------------CCCcEEEEeecCCCCCCCCCCCcccceeE
Q 015956          223 FSTDLKDDTMVPFDCFEEPWVIFRG--------------------------KDGIPGCVQNTCAHRACPLHLGSVNEGRI  276 (397)
Q Consensus       223 ~ssdL~~G~~~~v~i~G~~IVV~R~--------------------------~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L  276 (397)
                      .+++|++|+.+.+..-|+|+.|.|.                          .++++.++...|+|.||.......+.+.+
T Consensus         8 DlS~lepG~~~~V~WrGkPvfV~rRt~e~i~~~~~~~~~~l~dp~~~~~r~~~~~~~~~~~~CtHlGC~~~~~~~~~~~f   87 (127)
T d1riea_           8 KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGY   87 (127)
T ss_dssp             EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCTTTEEE
T ss_pred             ehhhCCCCCEEEEEECCceeEEEecCHHHhhhhhccchhhhcCccccccccccceEEEEEeccCCCCceeecccccCCeE
Confidence            5788999999999999999999872                          27899999999999999876555455789


Q ss_pred             EccccCeEEcCCCccccCCCcccccCCccccceEEEc-CEEE
Q 015956          277 QCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE-GMIW  317 (397)
Q Consensus       277 ~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e~~-G~Iw  317 (397)
                      .|||||.+||.+|+.+.+|+.    ..|..+|+...+ +.|-
T Consensus        88 ~CPCHgs~fd~~Grv~~GPAp----~~L~~p~~~~~~d~~v~  125 (127)
T d1riea_          88 YCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVI  125 (127)
T ss_dssp             EETTTTEEEETTCCEEESSCC----SCCCCCCEEESSSSEEE
T ss_pred             EecCcCCcCCCCCCEEcCCCC----CCCCCCcEEEeCCCEEE
Confidence            999999999999999999974    578899998885 4443

>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: Rieske protein II (SoxF)
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.04  E-value=9.5e-11  Score=106.86  Aligned_cols=68  Identities=22%  Similarity=0.403  Sum_probs=57.3

Q ss_pred             cCCCcEEEEeecCCCCCCCCCCCc-----------ccceeEEccccCeEEcC--CCccccCCCcccccCCccccceEEE-
Q 015956          247 GKDGIPGCVQNTCAHRACPLHLGS-----------VNEGRIQCPYHGWEYST--DGKCEKMPSTQLRNVKIKSLPCFEQ-  312 (397)
Q Consensus       247 ~~dG~i~A~~N~CPHRGa~Ls~G~-----------v~~~~L~CPyHGW~Fd~--dG~~~~vP~~~~~~~~L~~ypV~e~-  312 (397)
                      +.+|.|+||+++|||.||++....           ..++.|.|||||++||.  +|+++..|+.    ..|..++++++ 
T Consensus        80 Gp~~~ivA~s~iCtHlGC~~~~~~~~~~~~~~~~~~~~~~i~CpcHgS~FD~~~gG~v~~GPA~----~pLp~v~Le~d~  155 (202)
T d1jm1a_          80 GPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKDGGVVVSGPAP----RPLPIVILDYDS  155 (202)
T ss_dssp             TTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGGTSEEEESSCC----SCCCBEEEEECT
T ss_pred             CCCCeEEEEeCcCCCCCCcccccccccccccccccCCCCEEEccCcCCEEcCCCCCeEeCCCCC----CCcCccEEEEeC
Confidence            468899999999999999997531           23578999999999995  5999999985    47999999987 


Q ss_pred             -cCEEEE
Q 015956          313 -EGMIWI  318 (397)
Q Consensus       313 -~G~IwV  318 (397)
                       .|.||.
T Consensus       156 ~~g~iyA  162 (202)
T d1jm1a_         156 STGDIYA  162 (202)
T ss_dssp             TTCEEEE
T ss_pred             CCCeEEE
Confidence             499994

>d1z01a2 d.129.3.3 (A:164-442) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO
species: Pseudomonas putida [TaxId: 303]

Probab=97.40  E-value=4.3e-05  Score=71.35  Aligned_cols=59  Identities=15%  Similarity=0.177  Sum_probs=41.3

Q ss_pred             cCEEEEeCCCCC--CCCCCCCCCC--CCCceEeEEEEEEEecChhhHHHhhcCCCCCCccCcccc
Q 015956          313 EGMIWIWPGDEP--PTATIPCLLP--PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF  373 (397)
Q Consensus       313 ~G~IwV~l~~~~--p~~~lp~l~~--~~g~~~~~~~~~~~~~NWKl~vEN~lD~yH~p~vH~~tf  373 (397)
                      .|++|+++++..  |.+.+|.++.  ..+..+.+ ....++|||-..+||.+|.+|+ |+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~p~~p~~p~~~~~~~~~~~-~~~~~~~NWlQ~~En~iD~aH~-fLH~~s~   66 (279)
T d1z01a2           4 HDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVHG-MHRTGFGNWRIACENGFDNAHI-LVHKDNT   66 (279)
T ss_dssp             GGSCCCTTTTTTTSCCTTSCCCCCTTSTTEEEEE-EEEEEESCHHHHHTTTTCTTGG-GGGTTCH
T ss_pred             cCCceecCCccccCCCCCCCCCCcccCCCceEEE-EEEEeecchhhhhhcCcChhhe-eeecccc
Confidence            578899887643  3333444432  12344333 5667899999999999999998 9998754

>d2bmoa2 d.129.3.3 (A:153-439) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: Nitrobenzene dioxygenase alpha subunit, NBDO-alpha
species: Comamonas sp. JS765 [TaxId: 58226]

Probab=97.34  E-value=1.6e-05  Score=73.25  Aligned_cols=39  Identities=18%  Similarity=0.290  Sum_probs=31.3

Q ss_pred             CCceEeE-EEEEEEecChhhHHHhhc-CCCCCCccCccccc
Q 015956          336 SGFEIHA-EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTFA  374 (397)
Q Consensus       336 ~g~~~~~-~~~~~~~~NWKl~vEN~l-D~yH~p~vH~~tf~  374 (397)
                      .+.++.+ ..++.++||||+++||++ |.||++++|++++.
T Consensus        24 g~lev~~g~~r~~~~~NWKl~~ENf~~D~YH~~~~H~s~~~   64 (287)
T d2bmoa2          24 GGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALR   64 (287)
T ss_dssp             SCEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred             CCeEEEcceEEEEECCCcchHhhcccccccCCCccchhHHh
Confidence            3555543 567889999999999996 99999999986543

>d2b1xa2 d.129.3.3 (A:163-441) Naphthalene 1,2-dioxygenase alpha subunit, C-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: Naphthalene 1,2-dioxygenase alpha subunit, C-domain
species: Rhodococcus sp. ncimb12038 [TaxId: 92694]

Probab=97.28  E-value=2.2e-05  Score=72.67  Aligned_cols=42  Identities=24%  Similarity=0.300  Sum_probs=33.5

Q ss_pred             CCceEeE-EEEEEEecChhhHHHhhc-CCCCCCccCcccccCCC
Q 015956          336 SGFEIHA-EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTFAKGW  377 (397)
Q Consensus       336 ~g~~~~~-~~~~~~~~NWKl~vEN~l-D~yH~p~vH~~tf~~g~  377 (397)
                      .++++.+ ..++.++||||+.+||++ |.||++++|.+...-+.
T Consensus        24 ~glev~~g~~r~~i~~NWKl~~EN~~~D~YH~~~tH~S~~~~g~   67 (279)
T d2b1xa2          24 AGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVELGL   67 (279)
T ss_dssp             SCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHHHTS
T ss_pred             CceEEecCceEEEEcCCCchhhhcCCCcCCCccccchhHHhhcc
Confidence            4566554 567899999999999987 99999999987654443

>d1ulia2 d.129.3.3 (A:171-451) Biphenyl dioxygenase large subunit BphA1, C-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: Biphenyl dioxygenase large subunit BphA1, C-terminal domain
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

Probab=96.92  E-value=5.2e-05  Score=69.63  Aligned_cols=38  Identities=18%  Similarity=0.136  Sum_probs=30.5

Q ss_pred             CCceEe-EEEEEEEecChhhHHHhhc-CCCCCCccCcccc
Q 015956          336 SGFEIH-AEIVMELPIEHGLLLDNLL-DLAHAPFTHTSTF  373 (397)
Q Consensus       336 ~g~~~~-~~~~~~~~~NWKl~vEN~l-D~yH~p~vH~~tf  373 (397)
                      .+.++. +...+.++||||+.+||++ |.||++++|..+.
T Consensus        24 ~g~ev~~g~~r~~~~~NWKl~~ENf~~D~YH~~~~H~~~~   63 (281)
T d1ulia2          24 AGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSG   63 (281)
T ss_dssp             TCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHH
T ss_pred             CceEEecCceEEEecCCCeehhhcCCCCCccchhhhhhHH
Confidence            455554 3467889999999999988 9999999997543

>d1wqla2 d.129.3.3 (A:181-459) Large subunit of cumene dioxygenase cumA1 {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: Large subunit of cumene dioxygenase cumA1
species: Pseudomonas fluorescens [TaxId: 294]

Probab=96.41  E-value=0.00024  Score=65.36  Aligned_cols=36  Identities=11%  Similarity=0.081  Sum_probs=28.7

Q ss_pred             CCceEe-EEEEEEEecChhhHHHhhc-CCCCCCccCcc
Q 015956          336 SGFEIH-AEIVMELPIEHGLLLDNLL-DLAHAPFTHTS  371 (397)
Q Consensus       336 ~g~~~~-~~~~~~~~~NWKl~vEN~l-D~yH~p~vH~~  371 (397)
                      .++++. +...+.++||||+.+||+. |.||+..+|..
T Consensus        24 ~g~ev~~g~~r~~~~~NWKl~~ENf~~D~YH~~~~hh~   61 (279)
T d1wqla2          24 AVTQVITGMQKTVIPCNWKFAAEQFCSDMYHAGTMAHL   61 (279)
T ss_dssp             TCEEECSCCEEEEESSCHHHHHHHHHHBCHHHHTTTTH
T ss_pred             CceEEeccceEeeecCCceehhhcCCCCCcChhhhhhh
Confidence            455544 3467889999999999986 99999888854

>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Ring hydroxylating alpha subunit catalytic domain
domain: Terminal oxygenase component of carbazole CarAa
species: Janthinobacterium sp. j3 [TaxId: 213804]

Probab=90.11  E-value=0.091  Score=47.32  Aligned_cols=51  Identities=18%  Similarity=0.236  Sum_probs=37.6

Q ss_pred             CCCCCCCceEeEEEEEEEecChhhHHHhhcCCCCCCccCcccc---cCCCCCcceeE
Q 015956          331 CLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF---AKGWSVPRFVK  384 (397)
Q Consensus       331 ~l~~~~g~~~~~~~~~~~~~NWKl~vEN~lD~yH~p~vH~~tf---~~g~~vp~~v~  384 (397)
                      .++. .+..+. .....+..||.+.+||..|..|+ ++|..+.   ++.|..|-...
T Consensus        10 ~fLd-~d~v~~-G~~r~~~aNWRla~ENGFD~~Hi-~iHkds~~v~~~d~~lPlG~~   63 (242)
T d2de6a2          10 NFLD-DDMEIL-GKNQIIKSNWRLAVENGFDPSHI-YIHKDSILVKDNDLALPLGFA   63 (242)
T ss_dssp             TTTC-TTEEEE-EEEEEESSCHHHHHHHHHCGGGG-GGGTTCHHHHHTTBEECSEEE
T ss_pred             cccC-CCceee-ccccccccceEEeeccCcCcccE-EEecCCceEEeccccccccce
Confidence            4444 344444 45678899999999999999999 9998654   46777665543