Citrus Sinensis ID: 015968

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
Protein Sequence
MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGNYSISV
Secondary Structure (PSIPRED)
cccccEEEEcccccccccHHHHHHHcccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHccHHHHHHccccHHHHHHHHHHHHHHHHHEEEEc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccHHHcccccccHHccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccHHHHHEEEHHHHHHHHHcccccHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHcHEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHHHHHHHHHHHcHcEEEEEcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVAlncnftsnnsicmrdMGMKLTRATQGVETLFRstvkprsvkaqasagdieeatpfkpqakkssgvvlpFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLagatvgsftggsladkfgrtrtfqldavplAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVplyiseispteirgALGSVNQLFICVGILAALVAglplagnplwwrTMFGLAAIPSILLALgmglspesprwlfqqgkkSEAEKSIQTLYGKERVSEVMLDLtnagqgsaepeagwfdlfsSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANvfgnysisv
Flexible Loop (DISEMBL)
mqastyaikasvcfdarNRRRACVLAAgfantrsvalncnFTSNNSICMRDMGMKLTRATQGVEtlfrstvkprsvkaqasagdieeatpfkpqakksSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGaanvfgnysisv
Low Complexity Region (SEG)
MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLagigigissaiVPLYISEISPTEIRGALGSVNQLFICVGIlaalvaglplagnplWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGNYSISV
Disordered region (IsUnstruct)
*****YAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRATQGVETLF********************************GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP**PRWLF**************LY******EVMLDL**********EAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGNY****
Disordered Region (DISOPRED)
*********ASVCFDAR************************************************************************************VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSE*********************LFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGNYSISV
Disordered Region (DISEMBL)
MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRATQGVETLFRSTV*************IEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGNYSISV
Disordered Region (DISPRO)
**ASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSN**************************************************AKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGNYSISV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGNYSISV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	397	2.2.26 [Sep-21-2011]
Q56ZZ7	546	Plastidic glucose transpo	yes	no	0.977	0.710	0.756	1e-167
Q0WVE9	524	Probable plastidic glucos	no	no	0.773	0.585	0.408	1e-66
Q2V4B9	495	Probable plastidic glucos	no	no	0.745	0.597	0.425	3e-64
Q9FYG3	493	Probable plastidic glucos	no	no	0.727	0.586	0.438	2e-63
C0SPB2	457	Putative metabolite trans	yes	no	0.720	0.625	0.380	2e-48
P46333	461	Probable metabolite trans	no	no	0.702	0.605	0.346	3e-45
O52733	457	D-xylose-proton symporter	yes	no	0.715	0.621	0.348	4e-42
Q9ZQP6	580	Probable inositol transpo	no	no	0.692	0.474	0.368	4e-40
P47842	495	Solute carrier family 2,	yes	no	0.705	0.565	0.355	4e-40
Q8TDB8	520	Solute carrier family 2,	yes	no	0.748	0.571	0.341	7e-40

>sp|Q56ZZ7|PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2

 Score =  588 bits (1517), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 302/399 (75%), Positives = 336/399 (84%), Gaps = 11/399 (2%)

Query: 1   MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
           MQ+STYA+K +  F  + R     R        FA  +S+A       + S     MG  
Sbjct: 1   MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57

Query: 56  LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
           L RA  G++++   S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct: 58  LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116

Query: 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173
           ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRT
Sbjct: 117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRT 176

Query: 174 FQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS 233
           FQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYISEISPTEIRGALGS
Sbjct: 177 FQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGS 236

Query: 234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGK 293
           VNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM  SPESPRWL QQGK
Sbjct: 237 VNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGK 296

Query: 294 KSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQ 353
            SEAEK+I+TLYGKERV E++ DL+ +GQGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQ
Sbjct: 297 VSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQ 356

Query: 354 QLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGN 392
           QLAGINAVVYYSTSVFRS GI+SDVAASALVGA+NVFG 
Sbjct: 357 QLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGT 395

May be involved in the efflux of glucose towards the cytosol.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2

 Score =  254 bits (648), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 128/313 (40%), Positives = 198/313 (63%), Gaps = 6/313 (1%)

Query: 84  DIEEATPFKPQAKKSSGV----VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAEN 139
           D  E +P  P+ K S+ +      P V VA +   LFGYH+GV+NG +  +A++LG   N
Sbjct: 58  DDHEISPVPPE-KFSADLGWLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGN 116

Query: 140 TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMII 199
           ++L+G +VS  +AGA +GS   G L DKFG  RTFQ+  +PL  GA + A A S+  ++ 
Sbjct: 117 SILEGLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILC 176

Query: 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW 259
           GR L G+GIG+++ +VP+YISE++PT+ RG+LG++ Q+  C+GI+ +L+ G+P   +P W
Sbjct: 177 GRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHW 236

Query: 260 WRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTN 319
           WRTM  +A++P  LLALGM  + ESPRWL + G+  +A+  I+ ++G   V + + D  +
Sbjct: 237 WRTMLYVASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQS 296

Query: 320 AGQGS-AEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDV 378
             + S +   + W +L    + +V  +G +LF+ QQ AGIN V+Y+S+  F++VGI S  
Sbjct: 297 VMKNSGSNLNSRWLELLDKPHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGA 356

Query: 379 AASALVGAANVFG 391
            AS  VG  N  G
Sbjct: 357 QASLYVGVTNFAG 369

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2V4B9|PLST3_ARATH Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2

 Score =  246 bits (627), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 128/301 (42%), Positives = 190/301 (63%), Gaps = 5/301 (1%)

Query: 92  KPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLL 151
            P  K+S    LP V VA L ++LFGYHLGVVN  LE ++ DLG + NT+ +G +VS+ L
Sbjct: 48  NPSWKRS----LPHVLVASLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCL 103

Query: 152 AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGIS 211
            GA +GS   G +AD  GR R FQL A+P+  GA + A+ +S+  M++GR L GIG+GI 
Sbjct: 104 GGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIG 163

Query: 212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS 271
            ++  LY++E+SP  +RG  GS  Q+  C+G+L +L AG+P   N  WWR  F ++ +P+
Sbjct: 164 PSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPA 223

Query: 272 ILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGW 331
            +LA+ M L  ESP+WLF++G+ +EAE   + L G   V   M +L  + +G     A  
Sbjct: 224 AMLAVFMELCVESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAELVKSDRGDDADSAKL 283

Query: 332 FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFG 391
            +L   R ++VV +G+ LF  QQL+GINAV Y+S++VF+  G+ S  +A+  VG  N+ G
Sbjct: 284 SELLFGRSFRVVFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPS-ASANICVGVCNLLG 342

Query: 392 N 392
           +
Sbjct: 343 S 343

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYG3|PLST2_ARATH Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1

 Score =  243 bits (619), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/292 (43%), Positives = 185/292 (63%), Gaps = 3/292 (1%)

Query: 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 162
           LP V VA + + LFGYHLGVVN  LE ++ DLG + +T+ +G +VS  L GA +GS   G
Sbjct: 52  LPHVLVATISSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSG 111

Query: 163 SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEI 222
            +AD FGR R FQ+ A+P+  GAF+   + S+  M++GR L G G+G+   +  LY++E+
Sbjct: 112 GVADGFGRRRAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEV 171

Query: 223 SPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP 282
           SP  +RG  GS  Q+  C+G++AAL  G+P+     WWR  F L+ IP+ LLALGM L  
Sbjct: 172 SPAFVRGTYGSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCA 231

Query: 283 ESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAG-QGSAEPE-AGWFDLFSSRYW 340
           ESP+WLF+QGK +EAE   + L G   V   M +L       + EP+     +L   R+ 
Sbjct: 232 ESPQWLFKQGKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHS 291

Query: 341 KVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGN 392
           +VV +G+ LF  QQL+GINAV Y+S++VF+S G+ SD+  +  VG +N+ G+
Sbjct: 292 RVVFIGSTLFALQQLSGINAVFYFSSTVFKSAGVPSDL-GNIFVGVSNLLGS 342

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  193 bits (490), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/294 (38%), Positives = 166/294 (56%), Gaps = 8/294 (2%)

Query: 96  KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGAT 155
           KK S + L F G   LG  L+GY  GV++GA+ ++ K+LG+  N   +G +VSSLL GA 
Sbjct: 2   KKQSNIWLYFFG--ALGGALYGYDTGVISGAILFMKKELGL--NAFTEGLVVSSLLVGAI 57

Query: 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIV 215
           +GS   G L D+FGR +     A+    G    A A +   M++ R++ G+ +G S+ IV
Sbjct: 58  LGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIV 117

Query: 216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275
           PLY+SE++P   RGAL S+NQL I VGIL + +     A +   WR M GLAA+PS+LL 
Sbjct: 118 PLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNYIFA-DAEAWRWMLGLAAVPSLLLL 176

Query: 276 LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLF 335
           +G+   PESPRWLF  G++S+A+K ++ L G + + + + D+  A     + E G  +LF
Sbjct: 177 IGILFMPESPRWLFTNGEESKAKKILEKLRGTKDIDQEIHDIKEA---EKQDEGGLKELF 233

Query: 336 SSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANV 389
                  +  G  L   QQ  G N ++YY+   F +VG  +  +    VG   V
Sbjct: 234 DPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGFGNSASILGTVGIGTV 287

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3

 Score =  182 bits (462), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 173/294 (58%), Gaps = 15/294 (5%)

Query: 96  KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGAT 155
           K +   ++ F G   LG +L+GY  GV++GAL ++  D  I   T+ +G +VS LL GA 
Sbjct: 3   KDTRKYMIYFFG--ALGGLLYGYDTGVISGALLFINND--IPLTTLTEGLVVSMLLLGAI 58

Query: 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIV 215
            GS   G+ +D++GR +   + ++    GA  CA +Q++  +I  RV+ G+ +G S+A+V
Sbjct: 59  FGSALSGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALV 118

Query: 216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAGL---PLAGNPLWWRTMFGLAAIPSI 272
           P+Y+SE++PT+IRG LG++N L I  GIL A +      P       WR M GLAA+P++
Sbjct: 119 PVYLSEMAPTKIRGTLGTMNNLMIVTGILLAYIVNYLFTPFEA----WRWMVGLAAVPAV 174

Query: 273 LLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWF 332
           LL +G+   PESPRWL ++G + EA + +   +  +   ++ ++L    QG AE +    
Sbjct: 175 LLLIGIAFMPESPRWLVKRGSEEEARRIMNITHDPK---DIEMELAEMKQGEAEKKETTL 231

Query: 333 DLFSSRYWK-VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVG 385
            +  +++ + ++ +G  L +FQQ  GIN V+YY+ ++F   G+ +  +A   +G
Sbjct: 232 GVLKAKWIRPMLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASALGTMG 285

Could serve either a nutritional or an osmotic protection function.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1

 Score =  172 bits (436), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 101/290 (34%), Positives = 163/290 (56%), Gaps = 6/290 (2%)

Query: 96  KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGAT 155
           K S+G V  F     LG +LFGY  GV++GA+ ++ K + +      QGW+VS++L GA 
Sbjct: 3   KVSTGFVYFF---GALGGLLFGYDTGVISGAILFIQKQMNLGSWQ--QGWVVSAVLLGAI 57

Query: 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIV 215
           +G+   G  +D+FGR +   L A+    GA   A +    T+II R++ G+ +G +SA++
Sbjct: 58  LGAAIIGPSSDRFGRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALI 117

Query: 216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA 275
           P Y++E++P++ RG + S+ QL +  GIL A +     +G    WR M G AAIP+ LL 
Sbjct: 118 PTYLAELAPSDKRGTVSSLFQLMVMTGILLAYITNYSFSGFYTGWRWMLGFAAIPAALLF 177

Query: 276 LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLF 335
           LG  + PESPR+L + G   EA   + T+   ++V+ V  ++ +  + +     GW +LF
Sbjct: 178 LGGLILPESPRFLVKSGHLDEARHVLDTMNKHDQVA-VNKEINDIQESAKIVSGGWSELF 236

Query: 336 SSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVG 385
                  + +G  L +FQQ+ G N V+YY+ ++F  VG     A  A +G
Sbjct: 237 GKMVRPSLIIGIGLAIFQQVMGCNTVLYYAPTIFTDVGFGVSAALLAHIG 286

Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system).

Lactobacillus brevis (taxid: 1580)

>sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1

 Score =  166 bits (419), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/285 (36%), Positives = 152/285 (53%), Gaps = 10/285 (3%)

Query: 109 ACLGAILFGYHLGVVNGALEYLAKDLGIAEN-TVLQGWIVSSLLAGATVGSFTGGSLADK 167
           A +G +LFGY+ GV+ GAL Y+ ++ G  +N T LQ  IVS  +AGA VG+  GG   DK
Sbjct: 33  AGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGAAIGGWYNDK 92

Query: 168 FGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI 227
           FGR  +  +  V    GA +   A +   +I+GR+L G G+G++S   PLYISE+SP  I
Sbjct: 93  FGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLYISEMSPARI 152

Query: 228 RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRW 287
           RGAL S N L I  G   + +  L     P  WR M G++AIP+I+    M   PESPRW
Sbjct: 153 RGALVSTNGLLITGGQFLSYLINLAFVHTPGTWRWMLGVSAIPAIIQFCLMLTLPESPRW 212

Query: 288 LFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVS--- 344
           L++  +K+E+   ++ +Y  E V   +  L  + +     E      FS +    +S   
Sbjct: 213 LYRNDRKAESRDILERIYPAEMVEAEIAALKESVRAETADEDIIGHTFSDKLRGALSNPV 272

Query: 345 ------VGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASAL 383
                  G  + + QQ  GIN V+YYS ++ +  G  S+  A AL
Sbjct: 273 VRHGLAAGITVQVAQQFVGINTVMYYSPTILQFAGYASNKTAMAL 317

Plasma membrane inositol-proton symporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P47842|GTR3_CANFA Solute carrier family 2, facilitated glucose transporter member 3 OS=Canis familiaris GN=SLC2A3 PE=2 SV=1

 Score =  166 bits (419), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 107/301 (35%), Positives = 168/301 (55%), Gaps = 21/301 (6%)

Query: 108 VACLGAILFGYHLGVVNGALEYLAKDL------GIAEN-------TVLQGWIVSSLLAGA 154
           +A +G+  FGY+ GV+N A E + KD         +EN       T L    V+    G 
Sbjct: 16  IATIGSFQFGYNTGVIN-APETIIKDFLNYTLEEKSENLPTEVLLTSLWSLSVAIFSVGG 74

Query: 155 TVGSFTGGSLADKFGRTRT-FQLDAVPLAAGAFL--CATAQSVQTMIIGRVLAGIGIGIS 211
            +GSF+ G   ++FGR  +   ++ + +A G  +  C  AQSV+ +I+GR++ G+  G+ 
Sbjct: 75  MIGSFSVGLFVNRFGRRNSMLMVNLLAVAGGCLMGFCKIAQSVEMLILGRLIIGLFCGLC 134

Query: 212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP-LAGNPLWWRTMFGLAAIP 270
           +  VP+YI EISPT +RGA G++NQL I +GIL A + GL  + G    W  + G   IP
Sbjct: 135 TGFVPMYIGEISPTALRGAFGTLNQLGIVIGILVAQIFGLKVIMGTEELWPLLLGFTIIP 194

Query: 271 SILLALGMGLSPESPRWLFQQGKKSEAEKSI-QTLYGKERVSEVMLDLTN-AGQGSAEPE 328
           ++L +  +   PESPR+L    K+ E  K I Q L+G + VS+ + ++ + + + + E +
Sbjct: 195 AVLQSAALPFCPESPRFLLINRKEEENAKEILQRLWGTQDVSQDIQEMKDESARMAQEKQ 254

Query: 329 AGWFDLFSSR-YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAA 387
               +LF SR Y + + +   L L QQL+GINAV YYST +F+  G+E  + A+   G  
Sbjct: 255 VTVLELFRSRSYRQPIIISIMLQLSQQLSGINAVFYYSTGIFKDAGVEEPIYATIGAGVV 314

Query: 388 N 388
           N
Sbjct: 315 N 315

Facilitative glucose transporter. Probably a neuronal glucose transporter.

Canis familiaris (taxid: 9615)

>sp|Q8TDB8|GTR14_HUMAN Solute carrier family 2, facilitated glucose transporter member 14 OS=Homo sapiens GN=SLC2A14 PE=2 SV=1

 Score =  165 bits (417), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 171/316 (54%), Gaps = 19/316 (6%)

Query: 92  KPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGA----LEYLAKDLGIAEN-------- 139
           KP     +  ++  + VA +G+  FGY+ GV+N       E++ K L    N        
Sbjct: 24  KPHTLAVTPALIFAITVATIGSFQFGYNTGVINAPETIIKEFINKTLTDKANAPPSEVLL 83

Query: 140 TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL---CATAQSVQT 196
           T L    V+    G  +GSF+ G   ++FGR  +  +  +  A G  L   C  A+SV+ 
Sbjct: 84  TNLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLIVNLLAATGGCLMGLCKIAESVEM 143

Query: 197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA-G 255
           +I+GR++ G+  G+ +  VP+YI EISPT +RGA G++NQL I +GIL A + GL L  G
Sbjct: 144 LILGRLVIGLFCGLCTGFVPMYIGEISPTALRGAFGTLNQLGIVIGILVAQIFGLELILG 203

Query: 256 NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSE-AEKSIQTLYGKERVSEVM 314
           +   W  + G   +P+IL +  +   PESPR+L    KK E A + +Q L+G + VS+ +
Sbjct: 204 SEELWPVLLGFTILPAILQSAALPCCPESPRFLLINRKKEENATRILQRLWGTQDVSQDI 263

Query: 315 LDLTN-AGQGSAEPEAGWFDLFS-SRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV 372
            ++ + + + S E +    +LF  S Y + + +   L L QQL+GINAV YYST +F+  
Sbjct: 264 QEMKDESARMSQEKQVTVLELFRVSSYRQPIIISIVLQLSQQLSGINAVFYYSTGIFKDA 323

Query: 373 GIESDVAASALVGAAN 388
           G++  + A+   G  N
Sbjct: 324 GVQQPIYATISAGVVN 339

Facilitative glucose transporter (By similarity). May have a specific function related to spermatogenesis.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
297807643	545	GLT1 [Arabidopsis lyrata subsp. lyrata]	0.977	0.711	0.756	1e-168
18417892	546	Plastidic glucose transporter 4 [Arabido	0.977	0.710	0.756	1e-165
222423889	546	AT5G16150 [Arabidopsis thaliana]	0.977	0.710	0.756	1e-165
398806194	547	hexose transporter [Camellia sinensis]	0.974	0.707	0.755	1e-164
9755825	560	sugar transporter-like protein [Arabidop	0.977	0.692	0.731	1e-162
8347250	515	hexose transporter [Arabidopsis thaliana	0.906	0.699	0.797	1e-162
225452080	542	PREDICTED: plastidic glucose transporter	0.972	0.712	0.753	1e-161
9858106	555	putative glucose translocator [Mesembrya	0.972	0.695	0.724	1e-161
15625046	544	hexose transporter pGlT [Olea europaea]	0.977	0.713	0.735	1e-158
2688830	475	putative sugar transporter [Prunus armen	0.813	0.68	0.851	1e-157

>gi|297807643|ref|XP_002871705.1| GLT1 [Arabidopsis lyrata subsp. lyrata] gi|297317542|gb|EFH47964.1| GLT1 [Arabidopsis lyrata subsp. lyrata]

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 301/398 (75%), Positives = 339/398 (85%), Gaps = 10/398 (2%)

Query: 1   MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
           MQ+STYA+K +  F    R     R A      FA+ +S+A       + S   + MG K
Sbjct: 1   MQSSTYAVKGNAAFAFHRRTLSSNRSATSTGIRFADKKSIATTGPLYCSGS---KAMGAK 57

Query: 56  LTRATQGVETLFR-STVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAI 114
           L RA  G++++   S+VK RSV+AQAS+GD EEA P + + K+S G VLPFVGVACLGAI
Sbjct: 58  LARAENGIQSVMSFSSVKARSVRAQASSGDAEEAIPLRSEGKRS-GTVLPFVGVACLGAI 116

Query: 115 LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF 174
           LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVS+LLAGATVGSFTGG+LADKFGRTRTF
Sbjct: 117 LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSALLAGATVGSFTGGALADKFGRTRTF 176

Query: 175 QLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSV 234
           QLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYISEISPTEIRGALGSV
Sbjct: 177 QLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSV 236

Query: 235 NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKK 294
           NQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM  SPESPRWL QQGK 
Sbjct: 237 NQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGKV 296

Query: 295 SEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQ 354
           S+AEK+I+TLYGKERV E++ DL+ +GQGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQQ
Sbjct: 297 SQAEKAIKTLYGKERVVELVRDLSTSGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQQ 356

Query: 355 LAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGN 392
           LAGINAVVYYSTSVFRS GI+SDVAASALVGA+NVFG 
Sbjct: 357 LAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGT 394

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417892|ref|NP_568328.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|30685706|ref|NP_850828.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|42573381|ref|NP_974787.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|117940139|sp|Q56ZZ7.2|PLST4_ARATH RecName: Full=Plastidic glucose transporter 4; Short=AtpGlcT gi|16648753|gb|AAL25568.1| AT5g16150/T21H19_70 [Arabidopsis thaliana] gi|20259506|gb|AAM13873.1| putative sugar transporter [Arabidopsis thaliana] gi|21436467|gb|AAM51434.1| putative sugar transporter [Arabidopsis thaliana] gi|332004870|gb|AED92253.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|332004871|gb|AED92254.1| Plastidic glucose transporter 4 [Arabidopsis thaliana] gi|332004872|gb|AED92255.1| Plastidic glucose transporter 4 [Arabidopsis thaliana]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 302/399 (75%), Positives = 336/399 (84%), Gaps = 11/399 (2%)

Query: 1   MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
           MQ+STYA+K +  F  + R     R        FA  +S+A       + S     MG  
Sbjct: 1   MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57

Query: 56  LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
           L RA  G++++   S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct: 58  LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116

Query: 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173
           ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRT
Sbjct: 117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRT 176

Query: 174 FQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS 233
           FQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYISEISPTEIRGALGS
Sbjct: 177 FQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGS 236

Query: 234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGK 293
           VNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM  SPESPRWL QQGK
Sbjct: 237 VNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGK 296

Query: 294 KSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQ 353
            SEAEK+I+TLYGKERV E++ DL+ +GQGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQ
Sbjct: 297 VSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQ 356

Query: 354 QLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGN 392
           QLAGINAVVYYSTSVFRS GI+SDVAASALVGA+NVFG 
Sbjct: 357 QLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGT 395

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222423889|dbj|BAH19908.1| AT5G16150 [Arabidopsis thaliana]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 302/399 (75%), Positives = 336/399 (84%), Gaps = 11/399 (2%)

Query: 1   MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
           MQ+STYA+K +  F  + R     R        FA  +S+A       + S     MG  
Sbjct: 1   MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57

Query: 56  LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
           L RA  G++++   S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct: 58  LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116

Query: 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173
           ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRT
Sbjct: 117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRT 176

Query: 174 FQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS 233
           FQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYISEISPTEIRGALGS
Sbjct: 177 FQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGS 236

Query: 234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGK 293
           VNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM  SPESPRWL QQGK
Sbjct: 237 VNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGK 296

Query: 294 KSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQ 353
            SEAEK+I+TLYGKERV E++ DL+ +GQGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQ
Sbjct: 297 VSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQ 356

Query: 354 QLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGN 392
           QLAGINAVVYYSTSVFRS GI+SDVAASALVGA+NVFG 
Sbjct: 357 QLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGT 395

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|398806194|gb|AFP19448.1| hexose transporter [Camellia sinensis]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 303/401 (75%), Positives = 335/401 (83%), Gaps = 14/401 (3%)

Query: 1   MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVAL---NCNFTSNNSICMRDMG---- 53
           MQA+TYA K S  FD + RR       GF+  R   L   N   T  +S     +G    
Sbjct: 1   MQAATYASKGSXRFDNQKRR----FLPGFSELRKRGLGFNNLRMTERSSCFGLRLGSVAM 56

Query: 54  -MKLTRATQGVETLFRSTVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACL 111
             +L R   GV+ +FRS+ K RSV+AQASA GD+E+  P K QAK SSG VLP VGVACL
Sbjct: 57  EAELGRVRTGVDRVFRSSAKARSVRAQASADGDMEDLVPAKIQAK-SSGNVLPXVGVACL 115

Query: 112 GAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT 171
           GAILFGYHLGVVNGALEYL+KDLGIAENTV+QGWIVS+LLAGATVGSFTGG+LADKFGRT
Sbjct: 116 GAILFGYHLGVVNGALEYLSKDLGIAENTVIQGWIVSTLLAGATVGSFTGGALADKFGRT 175

Query: 172 RTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGAL 231
           +TFQLDA+PLA GAFLC TAQSVQTMIIGR+LAGIGIGISSAIVPLYISEISPTEIRG L
Sbjct: 176 KTFQLDAIPLAVGAFLCTTAQSVQTMIIGRLLAGIGIGISSAIVPLYISEISPTEIRGTL 235

Query: 232 GSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQ 291
           GSVNQLFIC+GILAALVAGLPLAGNPLWWR+MFG+A IPS+LLALGM  SPESPRWL+QQ
Sbjct: 236 GSVNQLFICIGILAALVAGLPLAGNPLWWRSMFGIAMIPSVLLALGMAFSPESPRWLYQQ 295

Query: 292 GKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFL 351
           GK S+AE SI+TL+GKE+V+EVM DL+ A QGS+EPEAGWFDLFSSRYWKV SVGAALFL
Sbjct: 296 GKISQAEMSIKTLFGKEKVAEVMNDLSAASQGSSEPEAGWFDLFSSRYWKVDSVGAALFL 355

Query: 352 FQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGN 392
           FQQLAGINAVVYYSTSVFRSVGI SDVAASALVGA+NVFG 
Sbjct: 356 FQQLAGINAVVYYSTSVFRSVGIASDVAASALVGASNVFGT 396

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9755825|emb|CAC01856.1| sugar transporter-like protein [Arabidopsis thaliana]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 302/413 (73%), Positives = 336/413 (81%), Gaps = 25/413 (6%)

Query: 1   MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
           MQ+STYA+K +  F  + R     R        FA  +S+A       + S     MG  
Sbjct: 1   MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57

Query: 56  LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
           L RA  G++++   S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct: 58  LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116

Query: 114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQG--------------WIVSSLLAGATVGSF 159
           ILFGYHLGVVNGALEYLAKDLGIAENTVLQG              WIVSSLLAGATVGSF
Sbjct: 117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGKYMMIHFFTPPVNGWIVSSLLAGATVGSF 176

Query: 160 TGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYI 219
           TGG+LADKFGRTRTFQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIGIGISSAIVPLYI
Sbjct: 177 TGGALADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYI 236

Query: 220 SEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG 279
           SEISPTEIRGALGSVNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A IPS+LLA+GM 
Sbjct: 237 SEISPTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMA 296

Query: 280 LSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRY 339
            SPESPRWL QQGK SEAEK+I+TLYGKERV E++ DL+ +GQGS+EPEAGWFDLFSSRY
Sbjct: 297 FSPESPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRY 356

Query: 340 WKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGN 392
           WKVVSVGAALFLFQQLAGINAVVYYSTSVFRS GI+SDVAASALVGA+NVFG 
Sbjct: 357 WKVVSVGAALFLFQQLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGT 409

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8347250|gb|AAF74569.1|AF215855_1 hexose transporter [Arabidopsis thaliana]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 291/365 (79%), Positives = 321/365 (87%), Gaps = 5/365 (1%)

Query: 29  FANTRSVALNCNFTSNNSICMRDMGMKLTRATQGVETLFR-STVKPRSVKAQASAGDIEE 87
           FA  +S+A       + S     MG  L RA  G++++   S+VK RSV+AQAS+GD EE
Sbjct: 1   FAGYKSLATTGPLYCSGS---EAMGATLARADNGIQSVMSFSSVKARSVRAQASSGDEEE 57

Query: 88  ATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIV 147
           A P + + K SSG VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIV
Sbjct: 58  AIPLRSEGK-SSGTVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIV 116

Query: 148 SSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIG 207
           SSLLAGATVGSFTGG+LADKFGRTRTFQLDA+PLA GAFLCATAQSVQTMI+GR+LAGIG
Sbjct: 117 SSLLAGATVGSFTGGALADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIG 176

Query: 208 IGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA 267
           IGISSAIVPLYISEISPTEIRGALGSVNQLFIC+GILAAL+AGLPLA NPLWWRTMFG+A
Sbjct: 177 IGISSAIVPLYISEISPTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVA 236

Query: 268 AIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEP 327
            IPS+LLA+GM  SPESPRWL QQGK SEAEK+I+TLYGKERV E++ DL+ +GQGS+EP
Sbjct: 237 VIPSVLLAIGMAFSPESPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLSASGQGSSEP 296

Query: 328 EAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAA 387
           EAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS GI+SDVAASALVGA+
Sbjct: 297 EAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSAGIQSDVAASALVGAS 356

Query: 388 NVFGN 392
           NV G 
Sbjct: 357 NVAGT 361

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452080|ref|XP_002284052.1| PREDICTED: plastidic glucose transporter 4 [Vitis vinifera] gi|51574116|gb|AAU07980.1| plastid hexose transporter [Vitis vinifera] gi|296087262|emb|CBI33636.3| unnamed protein product [Vitis vinifera]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 299/397 (75%), Positives = 324/397 (81%), Gaps = 11/397 (2%)

Query: 1   MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNS-----ICMRDMGMK 55
           MQ STYA K S+  + +NRR        F    S   N   T+N +     I    MG +
Sbjct: 1   MQTSTYAAKGSIGLELQNRRVFPRFGE-FRKQSSCVKNLRVTNNTTSSGLRIGSVVMGAE 59

Query: 56  LTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAIL 115
             R    +E +FR    PRSVKA+AS GDIE+     PQ K SSG VLPFVGVACLGAIL
Sbjct: 60  FGRPRTRIEAVFR----PRSVKARASGGDIEDVDVTAPQGK-SSGTVLPFVGVACLGAIL 114

Query: 116 FGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ 175
           FGYHLGVVNGALEYL+KDLGIAEN VLQGW+VS+LLAGAT+GSFTGG+LADKFGRTRTFQ
Sbjct: 115 FGYHLGVVNGALEYLSKDLGIAENAVLQGWVVSTLLAGATLGSFTGGALADKFGRTRTFQ 174

Query: 176 LDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVN 235
           LDA+PLA GAFLCATAQSVQTMIIGR+LAGIGIGISSA+VPLYISEISPTEIRGALGSVN
Sbjct: 175 LDAIPLAVGAFLCATAQSVQTMIIGRLLAGIGIGISSALVPLYISEISPTEIRGALGSVN 234

Query: 236 QLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKS 295
           QLFIC+GILAALVAGLPLA NPLWWRTMFG+A +PSILLALGM  SPESPRWLFQQGK S
Sbjct: 235 QLFICIGILAALVAGLPLARNPLWWRTMFGVAVVPSILLALGMAFSPESPRWLFQQGKIS 294

Query: 296 EAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQL 355
           EAEKSI+TL GKERV+EVM DL    QGS+E EAGWFDLFS RYWKVVSVGAALFLFQQL
Sbjct: 295 EAEKSIKTLNGKERVAEVMNDLREGLQGSSEQEAGWFDLFSGRYWKVVSVGAALFLFQQL 354

Query: 356 AGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGN 392
           AGINAVVYYSTSVFRS GI SDVAASALVGA+NVFG 
Sbjct: 355 AGINAVVYYSTSVFRSAGIASDVAASALVGASNVFGT 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9858106|gb|AAG00995.1|AF286906_1 putative glucose translocator [Mesembryanthemum crystallinum]

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 297/410 (72%), Positives = 335/410 (81%), Gaps = 24/410 (5%)

Query: 1   MQASTYAIKASVCFDARNRRRACVLAAG---FANTRSV---------------ALNCNFT 42
           MQAS+  +K ++ F+ +NRRR  +  AG   F N+  +               + +C  T
Sbjct: 1   MQASSCLVKGNLGFEVQNRRRGVLAVAGLGGFKNSSPILSSNLRFVNGVINKKSSSCKLT 60

Query: 43  SNNSICMRDMGMKLTRATQGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVV 102
           ++ S+ M   G  L R   G++ +F+ST K RSVKAQA++GD E+  P K Q K SS  V
Sbjct: 61  TSGSVLM---GAGLAR--MGLDHVFQSTAKYRSVKAQAASGDYEDPAPVKFQGK-SSASV 114

Query: 103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 162
           LP+VGVACLGAILFGYHLGVVNGALEYL+ DLGIA NTVLQGW+VS LLAGATVGSFTGG
Sbjct: 115 LPYVGVACLGAILFGYHLGVVNGALEYLSPDLGIAGNTVLQGWVVSILLAGATVGSFTGG 174

Query: 163 SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEI 222
           SLADKFGRTRTFQLDA+PLA GA+LCATAQSVQTM+IGR+L GIGIGISSA+VPLYISEI
Sbjct: 175 SLADKFGRTRTFQLDAIPLAIGAYLCATAQSVQTMMIGRLLCGIGIGISSALVPLYISEI 234

Query: 223 SPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP 282
           SPTEIRGALGSVNQLFIC+GILAALVAGLPLAGNPLWWRTMFG+AAIPS+LLALGM + P
Sbjct: 235 SPTEIRGALGSVNQLFICIGILAALVAGLPLAGNPLWWRTMFGIAAIPSVLLALGMAMCP 294

Query: 283 ESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV 342
           ESPRWLFQQGK +EAEK+   LYGKERV EVM DL  + QGS+EPEAGWFDLFSSRY KV
Sbjct: 295 ESPRWLFQQGKVAEAEKASAALYGKERVPEVMNDLKASVQGSSEPEAGWFDLFSSRYRKV 354

Query: 343 VSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGN 392
           VSVGAALFLFQQ+AGINAVVYYSTSVFRS GIESDVAASALVGAANVFG 
Sbjct: 355 VSVGAALFLFQQMAGINAVVYYSTSVFRSAGIESDVAASALVGAANVFGT 404

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15625046|gb|AAK62031.1| hexose transporter pGlT [Olea europaea]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 292/397 (73%), Positives = 323/397 (81%), Gaps = 9/397 (2%)

Query: 1   MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRAT 60
           MQ ST+A+K ++C   +N R          N    A++    +  S C    G+ L    
Sbjct: 1   MQVSTHAVKGNLCLGLQNLRPLPSSRELRENNLGFAVSELRMTKRSSCF---GIGLDSIA 57

Query: 61  QGV-----ETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAIL 115
            G      ++++ S  K RSV+AQA  GD+E+  P K Q K SSG VLP+VGVACLGAIL
Sbjct: 58  MGARGNWPKSVYGSLAKARSVRAQAYEGDVEDVAPAKIQVK-SSGTVLPYVGVACLGAIL 116

Query: 116 FGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ 175
           FGYHLGVVNGALEYLAKDLGIAEN VLQGW+VS+LLAGATVGSFTGGSLADKFGRT+TF 
Sbjct: 117 FGYHLGVVNGALEYLAKDLGIAENAVLQGWVVSTLLAGATVGSFTGGSLADKFGRTKTFL 176

Query: 176 LDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVN 235
           LDA+PLA GAFLCATAQ+++TMIIGR+LAGIGIGISSAIVPLYISEISPTEIRG LGSVN
Sbjct: 177 LDAIPLAVGAFLCATAQNIETMIIGRLLAGIGIGISSAIVPLYISEISPTEIRGTLGSVN 236

Query: 236 QLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKS 295
           QLFIC+GILAALVAGLPLAGNPLWWRTMFG+A IPSILLALGM  SPESPRWL+QQGK S
Sbjct: 237 QLFICIGILAALVAGLPLAGNPLWWRTMFGVAIIPSILLALGMAFSPESPRWLYQQGKIS 296

Query: 296 EAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQL 355
           EAE SI+ L GKERV+EVM DL  A QGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQQL
Sbjct: 297 EAEVSIRKLNGKERVAEVMSDLDAAAQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQQL 356

Query: 356 AGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGN 392
           AGINAVVYYSTSVFRS GI SDVAASALVGAANVFG 
Sbjct: 357 AGINAVVYYSTSVFRSAGITSDVAASALVGAANVFGT 393

Source: Olea europaea

Species: Olea europaea

Genus: Olea

Family: Oleaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2688830|gb|AAB88879.1| putative sugar transporter [Prunus armeniaca]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 276/324 (85%), Positives = 296/324 (91%), Gaps = 1/324 (0%)

Query: 69  STVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALE 128
           ST+K RSV+A+AS GD+E   P KPQ K SSG V PFVGVACLGAILFGYHLGVVNGALE
Sbjct: 2   STLKARSVQARASDGDLENLVPSKPQGK-SSGTVFPFVGVACLGAILFGYHLGVVNGALE 60

Query: 129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188
           YL+KDLGIAEN VLQGW+VS+LLAGATVGSFTGG+LADKFGRTRTFQLD +PLA GAFLC
Sbjct: 61  YLSKDLGIAENAVLQGWVVSALLAGATVGSFTGGALADKFGRTRTFQLDVIPLAIGAFLC 120

Query: 189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALV 248
           AT+QSVQTMI+GR L  +GIGI+SAIVPLYISEISPTEIRGALGSVNQLFIC+GIL ALV
Sbjct: 121 ATSQSVQTMIVGRYLLAVGIGITSAIVPLYISEISPTEIRGALGSVNQLFICIGILGALV 180

Query: 249 AGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKE 308
           AGLPLA NPLWWRTMFG+A +PS+LLALGM  SPESPRWLFQQGK SEAEK+I+TLYGKE
Sbjct: 181 AGLPLAANPLWWRTMFGVAIVPSVLLALGMAASPESPRWLFQQGKISEAEKAIKTLYGKE 240

Query: 309 RVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSV 368
           RVSEVM DLT+A QGS EPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSV
Sbjct: 241 RVSEVMHDLTSATQGSVEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSV 300

Query: 369 FRSVGIESDVAASALVGAANVFGN 392
           FRS GI SDVAASALVGAANVFG 
Sbjct: 301 FRSAGITSDVAASALVGAANVFGT 324

Source: Prunus armeniaca

Species: Prunus armeniaca

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
TAIR|locus:2181422	546	PGLCT "plastidic GLC transloca	0.974	0.708	0.698	5.8e-137
TAIR|locus:2205548	524	AT1G05030 [Arabidopsis thalian	0.841	0.637	0.365	9.6e-57
TAIR|locus:2019554	494	AT1G67300 [Arabidopsis thalian	0.727	0.585	0.410	2.9e-55
TAIR|locus:2017899	495	SGB1 "SUPPRESSOR OF G PROTEIN	0.727	0.583	0.393	1.6e-54
TAIR|locus:2058193	509	INT1 "inositol transporter 1"	0.788	0.614	0.323	2.3e-39
UNIPROTKB|P0AEP1	464	galP "galactose:H+ symporter"	0.743	0.635	0.322	4.8e-39
TIGR_CMR|CBU_0347	463	CBU_0347 "d-xylose-proton symp	0.722	0.619	0.342	6.1e-39
TAIR|locus:2009832	580	INT2 "inositol transporter 2"	0.740	0.506	0.342	2.6e-37
UNIPROTKB|F1PGX9	652	SLC2A13 "Uncharacterized prote	0.770	0.469	0.322	3.6e-37
UNIPROTKB|E1BML6	648	SLC2A13 "Uncharacterized prote	0.833	0.510	0.303	4.4e-37

TAIR|locus:2181422 PGLCT "plastidic GLC translocator" [Arabidopsis thaliana (taxid:3702)]

 Score = 1341 (477.1 bits), Expect = 5.8e-137, P = 5.8e-137
 Identities = 278/398 (69%), Positives = 311/398 (78%)

Query:     1 MQASTYAIKASVCFDARNR-----RRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMK 55
             MQ+STYA+K +  F  + R     R        FA  +S+A       + S     MG  
Sbjct:     1 MQSSTYAVKGNAAFAFQRRTFSSDRSTTSTGIRFAGYKSLATTGPLYCSGS---EAMGAT 57

Query:    56 LTRATQGVETLFR-STVKPRSVKAQASA-GDIEEATPFKPQAKKSSGVVLPFVGVACLGA 113
             L RA  G++++   S+VK RSV+AQAS+ GD EEA P + + K SSG VLPFVGVACLGA
Sbjct:    58 LARADNGIQSVMSFSSVKARSVRAQASSDGDEEEAIPLRSEGK-SSGTVLPFVGVACLGA 116

Query:   114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT 173
             ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG+LADKFGRTRT
Sbjct:   117 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRT 176

Query:   174 FQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGALGS 233
             FQLDA+PLA GAFLCATAQSVQTMI+GR+L           VPLYISEISPTEIRGALGS
Sbjct:   177 FQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGS 236

Query:   234 VNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGK 293
             VNQLFIC+GI               WWRTMFG+A IPS+LLA+GM  SPESPRWL QQGK
Sbjct:   237 VNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGK 296

Query:   294 KSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQ 353
              SEAEK+I+TLYGKERV E++ DL+ +GQGS+EPEAGWFDLFSSRYWKVVSVGAALFLFQ
Sbjct:   297 VSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQ 356

Query:   354 QLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFG 391
             QLAGINAVVYYSTSVFRS GI+SDVAASALVGA+NVFG
Sbjct:   357 QLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFG 394

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2205548 AT1G05030 [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 125/342 (36%), Positives = 190/342 (55%)

Query:    57 TRATQGVETLFRSTVKPRSVKAQASA--GDIEEATPFKPQAKKSSGV----VLPFVGVAC 110
             +R        FRS+ + + V   ++    D  E +P  P+ K S+ +      P V VA 
Sbjct:    29 SRKASSFSRFFRSSKRKKRVTTLSTKKPDDDHEISPVPPE-KFSADLGWLSAFPHVSVAS 87

Query:   111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR 170
             +   LFGYH+GV+NG +  +A++LG   N++L+G +VS  +AGA +GS   G L DKFG 
Sbjct:    88 MANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGSIVAGPLVDKFGY 147

Query:   171 TRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGA 230
              RTFQ+  +PL  GA + A A S+  ++ GR L           VP+YISE++PT+ RG+
Sbjct:   148 RRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIYISEVAPTKYRGS 207

Query:   231 LGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ 290
             LG++ Q+  C+GI               WWRTM  +A++P  LLALGM  + ESPRWL +
Sbjct:   208 LGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGMQFAVESPRWLCK 267

Query:   291 QGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEP-EAGWFDLFSSRYWKVVSVGAAL 349
              G+  +A+  I+ ++G   V + + D  +  + S     + W +L    + +V  +G +L
Sbjct:   268 VGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDKPHSRVAFIGGSL 327

Query:   350 FLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFG 391
             F+ QQ AGIN V+Y+S+  F++VGI S   AS  VG  N  G
Sbjct:   328 FVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYVGVTNFAG 369

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2019554 AT1G67300 [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 120/292 (41%), Positives = 170/292 (58%)

Query:   103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 162
             LP V VA + + LFGYHLGVVN  LE ++ DLG + +T+ +G +VS  L GA +GS   G
Sbjct:    52 LPHVLVATISSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSG 111

Query:   163 SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEI 222
              +AD FGR R FQ+ A+P+  GAF+   + S+  M++GR L             LY++E+
Sbjct:   112 GVADGFGRRRAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEV 171

Query:   223 SPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSP 282
             SP  +RG  GS  Q+  C+G+               WWR  F L+ IP+ LLALGM L  
Sbjct:   172 SPAFVRGTYGSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCA 231

Query:   283 ESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSA-EPEA-GWFDLFSSRYW 340
             ESP+WLF+QGK +EAE   + L G   V   M +L         EP+     +L   R+ 
Sbjct:   232 ESPQWLFKQGKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHS 291

Query:   341 KVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGN 392
             +VV +G+ LF  QQL+GINAV Y+S++VF+S G+ SD+  +  VG +N+ G+
Sbjct:   292 RVVFIGSTLFALQQLSGINAVFYFSSTVFKSAGVPSDLG-NIFVGVSNLLGS 342

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2017899 SGB1 "SUPPRESSOR OF G PROTEIN BETA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 114/290 (39%), Positives = 170/290 (58%)

Query:   103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG 162
             LP V VA L ++LFGYHLGVVN  LE ++ DLG + NT+ +G +VS+ L GA +GS   G
Sbjct:    55 LPHVLVASLTSLLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSG 114

Query:   163 SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEI 222
              +AD  GR R FQL A+P+  GA + A+ +S+  M++GR L             LY++E+
Sbjct:   115 LVADGVGRRRAFQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEV 174

Query:   223 SPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSP 282
             SP  +RG  GS  Q+  C+G+               WWR  F ++ +P+ +LA+ M L  
Sbjct:   175 SPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCV 234

Query:   283 ESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV 342
             ESP+WLF++G+ +EAE   + L G   V   M +L  + +G     A   +L   R ++V
Sbjct:   235 ESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAELVKSDRGDDADSAKLSELLFGRSFRV 294

Query:   343 VSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGN 392
             V +G+ LF  QQL+GINAV Y+S++VF+  G+ S  +A+  VG  N+ G+
Sbjct:   295 VFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPS-ASANICVGVCNLLGS 343

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 104/321 (32%), Positives = 163/321 (50%)

Query:    78 AQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIA 137
             A  S+G ++   P +  +   +  +L     A +G +LFGY  GV++GAL Y+  D  + 
Sbjct:     8 APGSSGYLD-MFPERRMSYFGNSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVV 66

Query:   138 -ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQT 196
              +++ LQ  IVS  L GA +G+  GG + D +GR +      V  AAGA + A A     
Sbjct:    67 KQSSFLQETIVSMALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYV 126

Query:   197 MIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXX 256
             +I GR+L            P+YI+E SP+E+RG L S N L I  G              
Sbjct:   127 LISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQV 186

Query:   257 XXWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLD 316
                WR M G++ +P+++  + M   PESPRWLF + +K+EA + +   Y   R+ + +  
Sbjct:   187 PGTWRWMLGVSGVPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDH 246

Query:   317 LTNAGQGSAEPE--AGWFDLFSSRYWKVVSV-GAALFLFQQLAGINAVVYYSTSVFRSVG 373
             L+ A +   + +   G+ D+F S+  ++  + GA L  FQQ  GIN V+YYS ++ +  G
Sbjct:   247 LSAAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAG 306

Query:   374 IESDVAA---SALVGAANVFG 391
               S+  A   S +V A N  G
Sbjct:   307 FHSNQLALFLSLIVAAMNAAG 327

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015798 "myo-inositol transport" evidence=IMP

UNIPROTKB|P0AEP1 galP "galactose:H+ symporter" [Escherichia coli K-12 (taxid:83333)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 100/310 (32%), Positives = 162/310 (52%)

Query:    93 PQAKK---SSGVVLPFVG-VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVS 148
             P AKK   S+  +  FV  +A L  +LFG  +GV+ GAL ++A +  I  +T  Q W+VS
Sbjct:     2 PDAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIADEFQITSHT--QEWVVS 59

Query:   149 SLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXX 208
             S++ GA VG+   G L+ K GR ++  + A+   AG+   A A +V+ +I+ RVL     
Sbjct:    60 SMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAV 119

Query:   209 XXXXXXVPLYISEISPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAA 268
                    PLY+SEI+P +IRG++ S+ QL I +GI               W R M G+  
Sbjct:   120 GVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYTGAW-RWMLGVII 178

Query:   269 IPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPE 328
             IP+ILL +G+   P+SPRW   + +  +AE+ +  L  ++  +E   +L    +     +
Sbjct:   179 IPAILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRL--RDTSAEAKRELDEIRESLQVKQ 236

Query:   329 AGWFDLF--SSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVA---ASAL 383
             +GW  LF  +S + + V +G  L + QQ  G+N ++YY+  +F   G  +       + +
Sbjct:   237 SGWA-LFKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPKIFELAGYTNTTEQMWGTVI 295

Query:   384 VGAANVFGNY 393
             VG  NV   +
Sbjct:   296 VGLTNVLATF 305

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015517 "galactose:hydrogen symporter activity" evidence=IDA

GO:0015757 "galactose transport" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 102/298 (34%), Positives = 157/298 (52%)

Query:    95 AKKSSGV-VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAG 153
             AKKS    V+ F+  A    ILFGY  GV++GA+ +++++  ++    + G++VS++L G
Sbjct:    11 AKKSHFYWVIAFI--AAFAGILFGYDTGVISGAILFISQEFHLSPQ--MNGFVVSAVLIG 66

Query:   154 ATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXX 213
             A +G+   G LAD  GR R   +DA+    G  + +   S+  ++IGR++          
Sbjct:    67 AFLGALFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSISWLVIGRIIVGIAIGIASY 126

Query:   214 XVPLYISEISPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSIL 273
               PLYISEISP   RGAL S+NQL + +GI               W R+MF    IP+ L
Sbjct:   127 SAPLYISEISPPHRRGALVSLNQLAVTIGIFLSYVVDYYFARHDAW-RSMFAAGVIPAAL 185

Query:   274 LALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAG-WF 332
             L LGM + P SPRW+F +G + +A   ++ L G    +E  L+   A   S + + G W 
Sbjct:   186 LLLGMIVLPYSPRWIFSRGHEEKALWILRKLRGHGPHAEQELEHIRA---SLQQQKGDWR 242

Query:   333 DLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIE-SDVAASALVGAANV 389
              LFS      + +   L +FQQ+ GIN V+YY+ ++ +  G + S  A  A +G   V
Sbjct:   243 TLFSKIIRPTLFIAIGLAVFQQVTGINTVLYYAPTILKMTGFQASQTAILATMGIGAV 300

GO:0015519 "D-xylose:hydrogen symporter activity" evidence=ISS

GO:0015753 "D-xylose transport" evidence=ISS

TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.6e-37, P = 2.6e-37
 Identities = 105/307 (34%), Positives = 153/307 (49%)

Query:   102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDL-GIAENTVLQGWIVSSLLAGATVGSFT 160
             VL     A +G +LFGY  GV++GAL Y+  D   +  NT LQ  IVS  +AGA VG+  
Sbjct:    28 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAAI 87

Query:   161 GGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYIS 220
             GG   DK GR     +       GA + A A +   +++GRV             PLYIS
Sbjct:    88 GGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYIS 147

Query:   221 EISPTEIRGALGSVNQLFICVGIXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGL 280
             E SP +IRGAL S N   I  G                 WR M G+A IP++L  + M  
Sbjct:   148 EASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGTWRWMLGIAGIPALLQFVLMFT 207

Query:   281 SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNA------GQGSAEPEAGWFDL 334
              PESPRWL+++G++ EA+  ++ +Y  E V + +  L ++       +GS+E +     L
Sbjct:   208 LPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSVETEILEEGSSE-KINMIKL 266

Query:   335 FSSR-YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAA---SALVGAANVF 390
               ++   + +  G  L +FQQ  GIN V+YYS ++ +  G  S+  A   S +    N F
Sbjct:   267 CKAKTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLVTAGLNAF 326

Query:   391 GNYSISV 397
             G+  IS+
Sbjct:   327 GSI-ISI 332

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IMP;IDA

GO:0015798 "myo-inositol transport" evidence=IDA

GO:0023052 "signaling" evidence=TAS

GO:0090406 "pollen tube" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=RCA

UNIPROTKB|F1PGX9 SLC2A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 404 (147.3 bits), Expect = 3.6e-37, P = 3.6e-37
 Identities = 103/319 (32%), Positives = 160/319 (50%)

Query:    83 GDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVL 142
             GD+E A   + Q  ++   V      + LG  LFGY  GVV+GA+  L + L +  + + 
Sbjct:    66 GDLERAARRQFQQDETPAFVYVAAVFSALGGFLFGYDTGVVSGAMLLLKRQLSL--DALW 123

Query:   143 QGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV 202
             Q  +VSS +  A V +  GG+L   FGR     L +   AAG+ + A A + +T++ GR+
Sbjct:   124 QELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFAAGSAVLAAAGNRETLLAGRL 183

Query:   203 LXXXXXXXXXXXVPLYISEISPTEIRGALGSVNQLFICVG-IXXXXXXXXXXXXXXXWWR 261
             +           VP+YI+E+SP  +RG L ++N LFI  G                  WR
Sbjct:   184 VVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWR 243

Query:   262 TMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAG 321
              M GLAAIP+++   G    PESPRWL Q+G+  +A + +  + G + + E    + N  
Sbjct:   244 YMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNI 303

Query:   322 Q------GSAEPEAGWFDLFS-SRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGI 374
             +      GSA P    + + S     + + VG  L +FQQL+GIN ++YYS ++ +  G+
Sbjct:   304 EEEEKEVGSAGPVI--YRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGV 361

Query:   375 ESDVAASALVGAANVFGNY 393
             E D  A  L  +   F N+
Sbjct:   362 EDDRLAIWLA-SVTAFTNF 379

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|E1BML6 SLC2A13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 403 (146.9 bits), Expect = 4.4e-37, P = 4.4e-37
 Identities = 105/346 (30%), Positives = 166/346 (47%)

Query:    59 ATQGVETLFRSTVKPRSVKAQASAG----DIEEATPFKPQAKKSSGVVLPFVGVACLGAI 114
             +T G  +L  +     S++   + G    D+E A   + Q  ++   V      + LG  
Sbjct:    34 STAGERSLLAAAESSASLQGAGAGGGGVGDLERAARRQFQQDETPAFVYVVAVFSALGGF 93

Query:   115 LFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF 174
             LFGY  GVV+GA+  L + L +  + + Q  +VSS +  A V +  GG+L   FGR    
Sbjct:    94 LFGYDTGVVSGAMLLLKRQLSL--DAMWQELLVSSTVGAAAVSALAGGALNGVFGRRAAI 151

Query:   175 QLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGALGSV 234
              L +    AG+ + A A + +T++ GR++           VP+YI+E+SP  +RG L ++
Sbjct:   152 LLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTI 211

Query:   235 NQLFICVG-IXXXXXXXXXXXXXXXWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGK 293
             N LFI  G                  WR M GLAAIP+++   G    PESPRWL Q+G+
Sbjct:   212 NTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQ 271

Query:   294 KSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYW------KVVSVGA 347
               +A + +  + G + + E    + N  +   E E G       R        + + VG 
Sbjct:   272 TQKARRILSQMRGNQTIDEEYDSIKNNIE-EEEKEVGSAGPVICRMLSYPPTRRALIVGC 330

Query:   348 ALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGNY 393
              L +FQQL+GIN ++YYS ++ +  G+E D  A  L  +   F N+
Sbjct:   331 GLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLA-SITAFTNF 375

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q56ZZ7	PLST4_ARATH	No assigned EC number	0.7568	0.9773	0.7106	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	397
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-63
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	5e-57
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	1e-44
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-21
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	6e-19
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	3e-16
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	3e-14
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-14
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	2e-10
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	2e-10
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	2e-10
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	6e-09
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	3e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	8e-08
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	4e-07
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	2e-06
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	3e-06
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	3e-06
COG0477	338	COG0477, ProP, Permeases of the major facilitator	2e-05
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	3e-04
PRK10504	471	PRK10504, PRK10504, putative transporter; Provisio	7e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.001
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	0.001

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  209 bits (534), Expect = 2e-63
 Identities = 109/299 (36%), Positives = 152/299 (50%), Gaps = 17/299 (5%)

Query: 108 VACLGAILFGYHLGVVNGALEYLAKDL---------GIAENTVLQGWIVSSLLAGATVGS 158
           VA LG  LFGY  GV+   L  +               A +TVL G IVS    G  +GS
Sbjct: 4   VAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGS 63

Query: 159 FTGGSLADKFGRTRTFQLDAVPLAAGAFL--CATAQSVQTMIIGRVLAGIGIGISSAIVP 216
              G L D+FGR ++  +  V    GA L   A  +S   +I+GRV+ G+G+G  S +VP
Sbjct: 64  LFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVP 123

Query: 217 LYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA--GNPLWWRTMFGLAAIPSILL 274
           +YISEI+P ++RGALGS+ QL I  GIL A + GL L    N   WR   GL  +P+ILL
Sbjct: 124 MYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILL 183

Query: 275 ALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEV---MLDLTNAGQGSAEPEAGW 331
            +G+   PESPRWL  +GK  EA   +  L G   V +      D       + +     
Sbjct: 184 LIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASWLE 243

Query: 332 FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVF 390
                    + + +G  L +FQQL GINA+ YYS ++F ++G+   +  + +VG  N  
Sbjct: 244 L-FRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFV 301

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  193 bits (493), Expect = 5e-57
 Identities = 119/303 (39%), Positives = 166/303 (54%), Gaps = 20/303 (6%)

Query: 108 VACLGAILFGYHLGVVNGALE------YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTG 161
           +A +G ++FGY  GV+ GAL               + ++ L G +VS  L G  +G+   
Sbjct: 32  IAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFA 91

Query: 162 GSLADKFGRTRTFQLDAVPLAAGAFL---CATAQSVQTMIIGRVLAGIGIGISSAIVPLY 218
           G L+D+FGR ++  + A+    GA L    A A SV+ +I+GRVL GIG+GI+SA+VP+Y
Sbjct: 92  GWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMY 151

Query: 219 ISEISPTEIRGALGSVNQLFICVGILAALVAGLP--LAGNPLWWRTMFGLAAIPSILLAL 276
           +SEI+P  +RGAL S+ QL I  GIL A   G       N L WR   GL  IP+ LL L
Sbjct: 152 LSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFL 211

Query: 277 GMGLSPESPRWLFQQGKKSEAEKSIQTLYG-----KERVSEVMLDLTNAGQGSAEPEAGW 331
           G+   PESPRWL  +G+  EA KS+  L G     KE + E+ L            +  W
Sbjct: 212 GLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSW 271

Query: 332 FDLFSS--RYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAA 387
             LFSS  R  + + +G  L  FQQ  GINA++YYS ++F + G+ +D     S +VGA 
Sbjct: 272 GSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAV 331

Query: 388 NVF 390
           N  
Sbjct: 332 NFA 334

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  160 bits (407), Expect = 1e-44
 Identities = 95/325 (29%), Positives = 163/325 (50%), Gaps = 39/325 (12%)

Query: 96  KKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYL------AKDLGIAENTVLQGWIVSS 149
           + +S  +     VA LG +LFGY   V++G +E L       ++L  +    L G+ V+S
Sbjct: 4   QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVAS 63

Query: 150 LLAGATVGSFTGGSLADKFGRTRT-------FQLDAVPLAAGAFLCATAQS-----VQTM 197
            L G  +G   GG  +++FGR  +       F + A+  A   F   +        V   
Sbjct: 64  ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEF 123

Query: 198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP 257
           +I R++ GIG+G++S + P+YI+EI+P  IRG L S NQ  I  G L        +A + 
Sbjct: 124 VIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSG 183

Query: 258 --LW-----WRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERV 310
              W     WR MF   AIP++L  + +   PE+PR+L  +GK+ +AE  ++ + G    
Sbjct: 184 DASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA 243

Query: 311 SEVMLDLTNA---GQGSAEPEAGWFDLFSSRYWK-VVSVGAALFLFQQLAGINAVVYYST 366
           ++ + ++ ++   G+ +         L    +   V+ +G  L +FQQ  GIN V+YY+ 
Sbjct: 244 TQALQEIKHSLDHGRKTGGK------LLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAP 295

Query: 367 SVFRSVGIESDVA--ASALVGAANV 389
            +F+++G  +D+A   + +VG  N+
Sbjct: 296 EIFKTLGASTDIALLQTIIVGVINL 320

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 95.1 bits (237), Expect = 1e-21
 Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 3/173 (1%)

Query: 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLA 165
           + +  LG  L G   G+++ AL  LA+DLG++ +    G IVS+   G  +GS   G L+
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLS 58

Query: 166 DKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPT 225
           D+FGR R   L  +  A G+ L A A S+  +++GR L G+G G         I+E  P 
Sbjct: 59  DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 226 EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM 278
           + RG    +      +G L   + G  LA + L WR +F + AI  +LLAL +
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAES-LGWRWLFLILAILGLLLALLL 170

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 87.4 bits (217), Expect = 6e-19
 Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 10/197 (5%)

Query: 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLA 165
           + ++ L  ++ GY L  +  A   ++ + G+  + V  G++ S+ L G   G+   G LA
Sbjct: 19  IILSFLIMLMDGYDLAAMGFAAPAISAEWGL--DPVQLGFLFSAGLIGMAFGALFFGPLA 76

Query: 166 DKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPT 225
           D+ GR R      +  +    LCA A +V  ++I R LAG+G+G     +   +SE +P 
Sbjct: 77  DRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK 136

Query: 226 EIRG-ALGSVNQLFICVGILAALVAG--LPLAGNPLWWRTMFGLAAI-PSILLALGMGLS 281
             RG A+G +   +     +   +AG  +P+ G    WR++F +  I P +LL L M   
Sbjct: 137 RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG----WRSLFYVGGIAPLLLLLLLMRFL 192

Query: 282 PESPRWLFQQGKKSEAE 298
           PES  +L  +  ++   
Sbjct: 193 PESIDFLVSKRPETVRR 209

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 14/234 (5%)

Query: 136 IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQ 195
           + E+        S    G  +GSF  G L+D+FGR +   L  +  A    L A + +  
Sbjct: 122 VCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYT 181

Query: 196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG 255
             ++ R+L G+GIG       +  +E  P + R  +G++ Q+F  +G++  L+  +    
Sbjct: 182 VFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV--LLPLVAYFI 239

Query: 256 NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQ---TLYGKERVSE 312
               WR +    ++P+ L  L     PESPRWL  QG+  EA K +Q    + GK+  +E
Sbjct: 240 PD--WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAE 297

Query: 313 V-MLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYS 365
           V  L L      S++ +  + DLF +   +  +          L    A  YY 
Sbjct: 298 VLSLSLEKDL-SSSKKQYSFLDLFRTPNLRKTT-----LCLMMLWFTTAFSYYG 345

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 74.2 bits (182), Expect = 3e-14
 Identities = 58/196 (29%), Positives = 83/196 (42%), Gaps = 20/196 (10%)

Query: 117 GYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL 176
           G  + VV   L    KDL I ++   +G +   +  G  VG+F  G LADK GR +   +
Sbjct: 180 GVEVFVVGFVLPSAEKDLCIPDSG--KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLI 237

Query: 177 DAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGA-LGSVN 235
                   AF  +  Q     +  R+L+G GIG +  IV  Y +E    E RG  L  + 
Sbjct: 238 CLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLC 297

Query: 236 QLFICVGILAALVAG--LPLAGNPLW------------WRTMFGLAAIPSILLALGMGLS 281
             ++  GI AA +A   +P  G   W            WR    + A P +     +   
Sbjct: 298 MFWMIGGIYAAAMAWAIIPHYG---WSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM 354

Query: 282 PESPRWLFQQGKKSEA 297
           PESPR+  + GK  EA
Sbjct: 355 PESPRFFLENGKHDEA 370

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 72.5 bits (178), Expect = 4e-14
 Identities = 56/208 (26%), Positives = 87/208 (41%), Gaps = 5/208 (2%)

Query: 110 CLGAILFGYHLGVVNGAL-EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF 168
            L A L G    ++  AL  YLA+DLGI+   +  G ++++   G  +     G L+D+F
Sbjct: 2   FLAAFLAGLGRSLLGPALPLYLAEDLGISPTEI--GLLLTAFSLGYALAQPLAGRLSDRF 59

Query: 169 GRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIR 228
           GR R   +  +  A G  L   A S+  +++ RVL G+G G         I++  P E R
Sbjct: 60  GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119

Query: 229 GALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA-LGMGLSPESPRW 287
           G    +      +G     + G  LA     WR  F + AI ++L A L   L P  P  
Sbjct: 120 GRALGLLSAGFGLGAALGPLLGGLLASL-FGWRAAFLILAILALLAAVLAALLLPRPPPE 178

Query: 288 LFQQGKKSEAEKSIQTLYGKERVSEVML 315
             +     EA   +   +       V+ 
Sbjct: 179 SKRPKPAEEAPAPLVPAWKLLLRDPVLW 206

Length = 346

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 19/223 (8%)

Query: 95  AKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQ-GWIVSSLLAG 153
           +  SS + L  +G+  L A+L G  L     A   +A++ G+    V Q GW  S+ + G
Sbjct: 7   SASSSRLALT-IGLCFLVALLEGLDLQSAGVAAPRMAQEFGLD---VAQMGWAFSAGILG 62

Query: 154 ATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIGIGIS 211
              G+  GG LAD+ GR R   L       G F  ATAQ     ++++ R+L G+G+G  
Sbjct: 63  LLPGALLGGRLADRIGRKRI--LIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLG-- 118

Query: 212 SAIVPLYI---SEISPTEIRGALGSVNQLFI-CVGILAALVAGLPLAGNPLWWRTMFGLA 267
              +P  I   SE     +RG   S+    +   G LA+++    LA     WR +F + 
Sbjct: 119 -GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG--VLAAGDAAWRHIFYVG 175

Query: 268 AI-PSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKER 309
            + P +L+ L M   PES  +    G   +    ++ L+G+ R
Sbjct: 176 GVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGR 218

Length = 406

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 11/161 (6%)

Query: 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181
           V  G L  +A DLG++E     G ++++   G  +G+     L  +  R R         
Sbjct: 31  VPVGLLPPIAADLGVSEGAA--GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88

Query: 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRG-ALGSVNQLFIC 240
                L A A S   +++ R LAG+  G+  +I     + + P   RG AL  V      
Sbjct: 89  IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVF----- 143

Query: 241 VGILAALVAGLPLA---GNPLWWRTMFGLAAIPSILLALGM 278
            G+  A V G+PL    G    WR  F   A+ ++L  L +
Sbjct: 144 TGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLL 184

Length = 394

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 1/170 (0%)

Query: 140 TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMII 199
           TV    ++S+ L     G+   G   D++GR        V  +AG   C  A    TM I
Sbjct: 46  TVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFI 105

Query: 200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG-ILAALVAGLPLAGNPL 258
            R++ GIG+G        Y+ E  P  +R     +      VG ++AA V  L +     
Sbjct: 106 ARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD 165

Query: 259 WWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKE 308
            WR +F ++ +P I         PE+  W  +   K+     +  LYG E
Sbjct: 166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGE 215

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 66/267 (24%), Positives = 108/267 (40%), Gaps = 45/267 (16%)

Query: 108 VACLGAILFGYHLGVVNGA---LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSL 164
           +A +G     Y L  ++     L Y+         + +   +  S   G   G    G L
Sbjct: 20  IAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWL 79

Query: 165 ADKFGRTRTFQLDAV-----PLAAGAFLCATAQSVQTMII-GRVLAGIGIG----ISSAI 214
           ADK GR R + ++ +      +A+G    ++ +SV   +   R   G+GIG    +S+ I
Sbjct: 80  ADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAII 139

Query: 215 VPLYISEISPTEIRGAL-GSV--NQLFICVGILA-ALVAGLPLAG--NPL---------- 258
                SE +  + RGA+  +V   Q F   GILA A+VA + LAG  + L          
Sbjct: 140 T----SEFATKKWRGAMMAAVFAMQGF---GILAGAIVALIVLAGFKHSLEAAADEASCT 192

Query: 259 ---------WWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKER 309
                     WR + G  A+P++L        PE+PR+     K  E   S  +   + +
Sbjct: 193 GSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVK 252

Query: 310 VSEVMLDLTNAGQGSAEPEAGWFDLFS 336
           +     ++  A      P+A W D F+
Sbjct: 253 IEAEPDEVEKASTAVEVPKASWSDFFT 279

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 11/155 (7%)

Query: 122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL 181
           +VN A+  +A DLG + + V   W+++S +    +     G LA +FG  R F +     
Sbjct: 20  IVNVAIPTIAGDLGSSLSQV--QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAF 77

Query: 182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRG-ALGSVNQLFIC 240
             G+ LC  A +++ MII RV+ G G G    +    +  I P E RG A+         
Sbjct: 78  TLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMA-----IWG 132

Query: 241 VGILAALVAGLPLAG---NPLWWRTMFGLAAIPSI 272
           + +L A   G  L G       WR +F +     I
Sbjct: 133 LTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGI 167

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 3/177 (1%)

Query: 101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFT 160
           ++   + +A    +L   + G++     YL + LG++      G ++S    G  +G+  
Sbjct: 173 LLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA--GLLLSLFGLGGILGALL 230

Query: 161 GGSLADKFGRTRTFQLDAVPLAA-GAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYI 219
           GG L+D+ GR R   L  + LAA G  L A A S+  +++  +L G G+G +   +    
Sbjct: 231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLA 290

Query: 220 SEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276
           SE++P E RG    +   F  +G     +    L     +      LAA+  +   L
Sbjct: 291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 11/152 (7%)

Query: 129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC 188
            L +DLG+  +    G++ S+   G  VG F GG L D+FG  +T  +  V    G F  
Sbjct: 19  MLQEDLGL--SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIV--IWGVFTG 74

Query: 189 ATA--QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG--IL 244
             A   +  ++ I RVL G         + L ++   P   R    S+      +G  I 
Sbjct: 75  LQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIG 134

Query: 245 AALVAGLPLAGNPLWWRTMFGLAAIPSILLAL 276
             LV  + +      W+  F +  +  I+  +
Sbjct: 135 GPLVGWILIH---FSWQWAFIIEGVLGIIWGV 163

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 35/141 (24%), Positives = 53/141 (37%)

Query: 144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203
           G +++    G  + S   G L D+FGR     +          + A + ++  +II R L
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM 263
            G G   +       I++I P E RG    +    I +G L     G  LA    W    
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120

Query: 264 FGLAAIPSILLALGMGLSPES 284
             LA +      L   L PE+
Sbjct: 121 LFLAILALAAFILLAFLLPET 141

Length = 141

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 11/169 (6%)

Query: 148 SSLLAGATVGSFTGG----SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL 203
           +SL++ A +  + GG    ++ D++GR     +  V  + G   C  A    T+ I R++
Sbjct: 58  ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLV 117

Query: 204 AGIGIGISSAIVPLYISEISPTEIRG-ALGSVNQLFICVGILAALVAGLPLAGNPLW-WR 261
            G+G+         Y+ E  P  +R  A G +   F    ++AA V  L +   P+W WR
Sbjct: 118 IGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV---PVWGWR 174

Query: 262 TMFGLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKER 309
            +F +  +P I+ AL +  + PE+  W  +   K+     +  LY  E 
Sbjct: 175 ALFFIGILP-IIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEH 222

Length = 496

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)

Query: 110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG 169
            L  +L    + V NG L Y      +  N  L   ++      A +G+     LA +FG
Sbjct: 228 LLLYLLNALAMAVRNGLLLYYFTY--VLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFG 285

Query: 170 RTRTFQLDAVPLAAGAFLCATA--QSVQTMIIGRVLAGIGIGISSAIVPLYISEI 222
           + RTF L  +  A G  L       S+   ++  VLAGIG+G+++ +    ++++
Sbjct: 286 KKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLADV 340

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 5/195 (2%)

Query: 108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK 167
              L A+L G  LG+++ AL  L   L ++   +L G ++S+   G  +GS   G L D+
Sbjct: 6   ALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDR 65

Query: 168 FGRTRTFQLDAVPLAAGAFLCATA--QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPT 225
           +GR +   +  +    G  L A A    +  ++I R+L G+G G    +    +SE  P 
Sbjct: 66  YGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPE 125

Query: 226 EIR--GALGSVNQLFICVG-ILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP 282
                 A+G V      +G  L  L+AGL L      WR  F LAA+  +LL + + L  
Sbjct: 126 ATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLLLD 185

Query: 283 ESPRWLFQQGKKSEA 297
                         A
Sbjct: 186 LLLAAPRLPLAVGLA 200

Length = 338

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 11/202 (5%)

Query: 109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQG-WIVSSLLAGATVGSFTGGSLADK 167
           A LG +  G+   ++   +  +  DLG+   T ++G ++ ++   G   G    G LADK
Sbjct: 23  AWLGYVFDGFDFMLIFYIMYLIKADLGL---TDMEGAFLATAAFIGRPFGGALFGLLADK 79

Query: 168 FGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI 227
           FGR        V  + G  L   A  V  + + R + G+G+    A    Y  E  P  +
Sbjct: 80  FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL 139

Query: 228 RGALGSVNQLFICVG-ILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPR 286
           +    +       +G I+AA    +P       WR  F +  +P +L+      +PES  
Sbjct: 140 KSKASAFLVSGFGIGNIIAAYF--MPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKE 197

Query: 287 W----LFQQGKKSEAEKSIQTL 304
           W    L  +GK S++  S+ +L
Sbjct: 198 WEEAKLSGKGKHSQSAWSVFSL 219

Length = 426

>gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 122 VVNGALEYLAKDLGIAENTV-LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180
           +VN AL  +A+ LG  E+ + +   IVS +L  A +   +G  LAD+ G    F    V 
Sbjct: 28  IVNTALPSMAQSLG--ESPLHMHMVIVSYVLTVAVMLPASGW-LADRVGVRNIFFTAIVL 84

Query: 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE 226
              G+  CA + ++  +++ RVL G+G  +   +  L + +I P E
Sbjct: 85  FTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE 130

Length = 471

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 5/139 (3%)

Query: 111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR 170
           L  +LFG+    +   L    + LG+  + +L G ++        +G    G L+D+ GR
Sbjct: 209 LALLLFGFAFFALLTYLPLYQEVLGL--SALLAGLLLGLAGLLGAIGRLLLGRLSDRLGR 266

Query: 171 TRTFQLD---AVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI 227
            R   L     +  A G  L +  +S   +++  +L G G G+    +   +S+++P E 
Sbjct: 267 RRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEE 326

Query: 228 RGALGSVNQLFICVGILAA 246
           RG    +      +G    
Sbjct: 327 RGTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 17/165 (10%)

Query: 156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQT--------MIIGRVLAGIG 207
           +G+   G   D+ GR +T  +  + +  G  L     S  T        +++ R++ G  
Sbjct: 50  LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109

Query: 208 IGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL------AGNPLW-W 260
           +G       LY++E +P   RG  GS  Q+   VG+L A +  L L           W W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169

Query: 261 RTMFGLAA-IPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTL 304
           R  F ++A +  I L L   L  E+P +   Q K  +    I   
Sbjct: 170 RIPFLVSAVLVLIGLYLRRNLE-ETPVFEKAQEKHKKKRGPIAET 213

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	397
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.97
KOG0569	485	consensus Permease of the major facilitator superf	99.97
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.96
KOG0254	513	consensus Predicted transporter (major facilitator	99.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.95
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.95
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.95
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.95
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.95
PRK10642	490	proline/glycine betaine transporter; Provisional	99.94
TIGR00891	405	2A0112 putative sialic acid transporter.	99.94
PRK12307	426	putative sialic acid transporter; Provisional	99.93
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.93
PRK11663	434	regulatory protein UhpC; Provisional	99.93
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.93
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.93
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.93
PRK03545	390	putative arabinose transporter; Provisional	99.93
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.93
TIGR00895	398	2A0115 benzoate transport.	99.93
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.93
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.93
TIGR00898	505	2A0119 cation transport protein.	99.92
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.92
PRK09705	393	cynX putative cyanate transporter; Provisional	99.92
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.92
PLN00028	476	nitrate transmembrane transporter; Provisional	99.91
TIGR00893	399	2A0114 d-galactonate transporter.	99.91
KOG2533	495	consensus Permease of the major facilitator superf	99.91
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.91
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.91
PRK03699	394	putative transporter; Provisional	99.91
PRK15075	434	citrate-proton symporter; Provisional	99.9
PRK10091	382	MFS transport protein AraJ; Provisional	99.9
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.9
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.9
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.9
PRK03893	496	putative sialic acid transporter; Provisional	99.9
PRK09952	438	shikimate transporter; Provisional	99.9
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.9
KOG2532	466	consensus Permease of the major facilitator superf	99.9
PRK11043	401	putative transporter; Provisional	99.9
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.9
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.89
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.89
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.89
TIGR00805	633	oat sodium-independent organic anion transporter.	99.89
TIGR00900	365	2A0121 H+ Antiporter protein.	99.89
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.89
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.89
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.88
PRK10133	438	L-fucose transporter; Provisional	99.88
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.88
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.88
PRK03633	381	putative MFS family transporter protein; Provision	99.87
PRK10504	471	putative transporter; Provisional	99.87
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.87
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.87
PRK05122	399	major facilitator superfamily transporter; Provisi	99.86
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.86
PRK12382	392	putative transporter; Provisional	99.86
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.86
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.86
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.85
PRK10489	417	enterobactin exporter EntS; Provisional	99.84
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.84
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.83
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.83
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.83
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.82
PRK09874	408	drug efflux system protein MdtG; Provisional	99.82
PRK10054	395	putative transporter; Provisional	99.81
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.81
PRK11010	491	ampG muropeptide transporter; Validated	99.81
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.8
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.8
TIGR00901	356	2A0125 AmpG-related permease.	99.8
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.79
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.79
PRK11902	402	ampG muropeptide transporter; Reviewed	99.78
PTZ00207	591	hypothetical protein; Provisional	99.78
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.78
KOG2615	451	consensus Permease of the major facilitator superf	99.77
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.77
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.77
PRK10642	490	proline/glycine betaine transporter; Provisional	99.77
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.77
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.76
PRK15011	393	sugar efflux transporter B; Provisional	99.75
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.73
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.73
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.7
PRK09528	420	lacY galactoside permease; Reviewed	99.69
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.67
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.64
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.64
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.63
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.63
PRK15011	393	sugar efflux transporter B; Provisional	99.63
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.62
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.62
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.62
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.6
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.58
KOG3626	735	consensus Organic anion transporter [Secondary met	99.58
PRK09528	420	lacY galactoside permease; Reviewed	99.57
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.56
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.55
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.54
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.54
PRK05122	399	major facilitator superfamily transporter; Provisi	99.54
PRK09952	438	shikimate transporter; Provisional	99.53
KOG2563	480	consensus Permease of the major facilitator superf	99.52
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.51
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.5
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.5
PRK12382	392	putative transporter; Provisional	99.5
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.49
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.48
PRK03699	394	putative transporter; Provisional	99.47
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.47
TIGR00893	399	2A0114 d-galactonate transporter.	99.46
PRK03893	496	putative sialic acid transporter; Provisional	99.45
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.44
PRK03545	390	putative arabinose transporter; Provisional	99.44
PRK09874	408	drug efflux system protein MdtG; Provisional	99.44
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.42
TIGR00891	405	2A0112 putative sialic acid transporter.	99.42
PRK10489	417	enterobactin exporter EntS; Provisional	99.41
PRK09705	393	cynX putative cyanate transporter; Provisional	99.4
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.4
PRK03633	381	putative MFS family transporter protein; Provision	99.4
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.4
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.39
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.38
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.38
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.37
PRK09669	444	putative symporter YagG; Provisional	99.36
PLN00028	476	nitrate transmembrane transporter; Provisional	99.36
PF13347	428	MFS_2: MFS/sugar transport protein	99.36
PRK12307	426	putative sialic acid transporter; Provisional	99.33
PRK11663	434	regulatory protein UhpC; Provisional	99.33
PRK11010	491	ampG muropeptide transporter; Validated	99.33
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.32
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.32
TIGR00895	398	2A0115 benzoate transport.	99.31
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.31
PRK10429	473	melibiose:sodium symporter; Provisional	99.31
PRK10504	471	putative transporter; Provisional	99.29
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.28
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.27
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.27
PRK15075	434	citrate-proton symporter; Provisional	99.27
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.26
TIGR00898	505	2A0119 cation transport protein.	99.26
PRK11462	460	putative transporter; Provisional	99.26
TIGR00900	365	2A0121 H+ Antiporter protein.	99.26
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.25
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.25
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.24
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.23
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.22
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.22
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.21
PRK10091	382	MFS transport protein AraJ; Provisional	99.21
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.21
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.2
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.2
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.2
PRK10054	395	putative transporter; Provisional	99.19
KOG0569	485	consensus Permease of the major facilitator superf	99.18
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.18
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.17
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.17
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.16
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.16
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.15
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.15
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.12
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.12
PRK11902	402	ampG muropeptide transporter; Reviewed	99.11
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.09
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.08
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.07
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.07
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.07
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.06
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.05
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.04
PRK10133	438	L-fucose transporter; Provisional	99.04
PRK09848	448	glucuronide transporter; Provisional	99.03
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.03
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.02
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.02
PRK09848	448	glucuronide transporter; Provisional	99.01
TIGR00901	356	2A0125 AmpG-related permease.	99.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.0
PF13347	428	MFS_2: MFS/sugar transport protein	98.96
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.96
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.96
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.96
COG0477	338	ProP Permeases of the major facilitator superfamil	98.95
COG2211	467	MelB Na+/melibiose symporter and related transport	98.93
PRK10429	473	melibiose:sodium symporter; Provisional	98.92
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.91
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.88
PRK11043	401	putative transporter; Provisional	98.86
PRK09669	444	putative symporter YagG; Provisional	98.85
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.82
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.82
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.8
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.78
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.77
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.77
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.77
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.76
KOG3762	618	consensus Predicted transporter [General function	98.74
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.71
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.71
KOG2532	466	consensus Permease of the major facilitator superf	98.69
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.66
COG2211	467	MelB Na+/melibiose symporter and related transport	98.65
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.62
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.58
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.56
PRK11462	460	putative transporter; Provisional	98.54
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.53
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.53
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.53
KOG0254	513	consensus Predicted transporter (major facilitator	98.48
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.45
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.43
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.42
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.42
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.28
KOG2533	495	consensus Permease of the major facilitator superf	98.26
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.16
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.15
KOG0637	498	consensus Sucrose transporter and related proteins	98.12
PF12832	77	MFS_1_like: MFS_1 like family	98.11
PTZ00207	591	hypothetical protein; Provisional	98.09
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.98
KOG2615	451	consensus Permease of the major facilitator superf	97.89
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.89
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.81
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.76
COG3202	509	ATP/ADP translocase [Energy production and convers	97.66
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.62
KOG3810	433	consensus Micronutrient transporters (folate trans	97.61
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.57
PRK03612	521	spermidine synthase; Provisional	97.54
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.5
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.5
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.49
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.45
KOG2563	480	consensus Permease of the major facilitator superf	97.28
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.23
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.15
KOG1330	493	consensus Sugar transporter/spinster transmembrane	96.87
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.86
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.78
TIGR00805	633	oat sodium-independent organic anion transporter.	96.7
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.68
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.62
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.42
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.31
KOG2325	488	consensus Predicted transporter/transmembrane prot	95.75
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.7
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.23
KOG3762	618	consensus Predicted transporter [General function	95.1
KOG3097	390	consensus Predicted membrane protein [Function unk	94.25
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.91
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	93.71
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	93.43
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	92.46
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	89.2
KOG0637	498	consensus Sucrose transporter and related proteins	88.92
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	88.81
COG4262	508	Predicted spermidine synthase with an N-terminal m	87.81
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	84.66
KOG3880	409	consensus Predicted small molecule transporter inv	82.82
KOG3880	409	consensus Predicted small molecule transporter inv	82.77
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	82.36

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.97  E-value=1e-28  Score=245.97  Aligned_cols=269  Identities=22%  Similarity=0.282  Sum_probs=216.0

Q ss_pred             chHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhH
Q 015968          100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV  179 (397)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~  179 (397)
                      +..|.++++++++.+..+++...++.++|.+.+++|++..+.  +++.+++.++++++.+++|+++||+|||++++++.+
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~--g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li  240 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK--GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS  240 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            456667777888888888888888899999999999998887  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC---
Q 015968          180 PLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN---  256 (397)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---  256 (397)
                      +.+++.++++++++++.++++|++.|++.|+..+....+++|++|++.|+..++++.++..+|.++++.++..+...   
T Consensus       241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~  320 (742)
T TIGR01299       241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW  320 (742)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988776544321   


Q ss_pred             ---------CcchHHHHHHhHHHHHHHHHHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcch----HHH---HHHHHhh
Q 015968          257 ---------PLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERV----SEV---MLDLTNA  320 (397)
Q Consensus       257 ---------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~  320 (397)
                               ..+||+.+++.+++.++.+++.+++||+|+|+..+++.+++.+.++++...+..    +..   ....+..
T Consensus       321 ~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~  400 (742)
T TIGR01299       321 SFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTI  400 (742)
T ss_pred             hhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHh
Confidence                     147999999888888877777888999999999999999999999888754321    110   0111100


Q ss_pred             c------C-CCCCCc-----------------cchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q 015968          321 G------Q-GSAEPE-----------------AGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS  371 (397)
Q Consensus       321 ~------~-~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (397)
                      .      + +.+...                 ..++++++.++++.+++.++++ +....+++.+..|+|.++..
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~w-f~~~~~yygl~~w~P~~~~~  474 (742)
T TIGR01299       401 HQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVW-FTLSFGYYGLSVWFPDMIKH  474 (742)
T ss_pred             hhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            0      0 000000                 1355677776777766655555 55556789999999998755

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=9.5e-28  Score=225.28  Aligned_cols=298  Identities=32%  Similarity=0.587  Sum_probs=244.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHhHhhchhhHHHHH--------HHhC--CCch--hhHHHHHHHHHHHHHHHHHHhhhhhhc
Q 015968           99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLA--------KDLG--IAEN--TVLQGWIVSSLLAGATVGSFTGGSLAD  166 (397)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~--~~~~~~~~~~~~~~~~i~~~~~g~l~d  166 (397)
                      .++....+.++.++.+..+|..+.+++..+.+.        +.+|  .+++  +.+.+.+.+++.+|.++|+++.++++|
T Consensus         6 t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~   85 (485)
T KOG0569|consen    6 TRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD   85 (485)
T ss_pred             cHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666677777888888888877655443        3445  3332  234678899999999999999999999


Q ss_pred             ccchHHHHHHhhHHHHHHHHHHHh---hchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHH
Q 015968          167 KFGRTRTFQLDAVPLAAGAFLCAT---AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI  243 (397)
Q Consensus       167 ~~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  243 (397)
                      |+|||..+.++.++..++.+++.+   .+++.+++++|++.|+..|......+.|+.|..|.+.||........+..+|.
T Consensus        86 ~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~  165 (485)
T KOG0569|consen   86 RFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGI  165 (485)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHH
Confidence            999999999998888887776665   47899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh-hcCCCCcchHHHHHHhHHHHHHHHHHhccCCCChHHHHH-cCCHHHHHHHHHHHhCCcchHHHHHHHH---
Q 015968          244 LAALVAGL-PLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQ-QGKKSEAEKSIQTLYGKERVSEVMLDLT---  318 (397)
Q Consensus       244 ~~~~~~~~-~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  318 (397)
                      +++..++. .+......|++.+.+..+++++.++...++||+|+|+.. +++.+++++.+++++++++++++.++..   
T Consensus       166 ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~  245 (485)
T KOG0569|consen  166 LLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREI  245 (485)
T ss_pred             HHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence            99966654 344444779999999999999999999999999999987 8999999999999999876554443322   


Q ss_pred             hhcCCCCCCccchhhhhcc-chhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHcCCChh--HHHHHHHHHHHHHhhhhc
Q 015968          319 NAGQGSAEPEAGWFDLFSS-RYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAANVFGNYSI  395 (397)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~  395 (397)
                      +..+.+++++.++++++++ ..+++..+.+.+..+.++.|.+++.+|...++++.|++..  ..+....+..+++.++++
T Consensus       246 ~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~  325 (485)
T KOG0569|consen  246 EEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVS  325 (485)
T ss_pred             HHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222233467789999998 4778888888999999999999999999999999999987  677778888888887776


Q ss_pred             c
Q 015968          396 S  396 (397)
Q Consensus       396 ~  396 (397)
                      .
T Consensus       326 ~  326 (485)
T KOG0569|consen  326 P  326 (485)
T ss_pred             H
Confidence            4

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.96  E-value=1.6e-26  Score=224.83  Aligned_cols=289  Identities=31%  Similarity=0.553  Sum_probs=211.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHh--------CCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHH
Q 015968          101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDL--------GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTR  172 (397)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~  172 (397)
                      ....++.++.++.+..+++...+++..+.+++++        +.+..+.  +++.+++.++.+++++++|+++||+|||+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~ig~~~~~~~~G~l~dr~Grr~   86 (479)
T PRK10077          9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLL--GFCVASALIGCIIGGALGGYCSNRFGRRD   86 (479)
T ss_pred             HHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            3455666677888999999999999999999988        7777777  99999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHhh------------chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHH
Q 015968          173 TFQLDAVPLAAGAFLCATA------------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFIC  240 (397)
Q Consensus       173 ~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  240 (397)
                      +++++.++.+++.++++++            +.+..+++.|+++|++.|...+...++++|++|+++|++++++...+..
T Consensus        87 ~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~  166 (479)
T PRK10077         87 SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII  166 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHH
Confidence            9999999999888877763            2356788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCC-------CCcchHHHHHHhHHHHHHHHHHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHH
Q 015968          241 VGILAALVAGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEV  313 (397)
Q Consensus       241 ~g~~~~~~~~~~l~~-------~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (397)
                      +|.++++++++.+..       ...+||+.|++.+++.++..+..+++||+|+++..+++.++..+..++..+.++.++.
T Consensus       167 ~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  246 (479)
T PRK10077        167 FGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA  246 (479)
T ss_pred             HHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHH
Confidence            999998887664431       1268999999988888777766778899999887777777766666665544433332


Q ss_pred             HHHHHhhcCCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHcCCChh--HHHHHHHHHHHHHh
Q 015968          314 MLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAANVFG  391 (397)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g  391 (397)
                      .++.++..+++..+   ....+. .......+......+.+..+.+.+.+|.|.++++.|++..  .......++..+++
T Consensus       247 ~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~  322 (479)
T PRK10077        247 LQEIKHSLDHGRKT---GGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTF  322 (479)
T ss_pred             HHHHHHHHHHhhhh---hhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence            22222211100000   011111 1112222333344555566667778889999999888754  33444455555555


Q ss_pred             hhhc
Q 015968          392 NYSI  395 (397)
Q Consensus       392 ~~~~  395 (397)
                      .+++
T Consensus       323 ~~~~  326 (479)
T PRK10077        323 TVLA  326 (479)
T ss_pred             HHHH
Confidence            5443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=1.2e-26  Score=226.78  Aligned_cols=294  Identities=43%  Similarity=0.683  Sum_probs=236.9

Q ss_pred             HHHHHHHHHHHHHHHHHh--HhhchhhHHHHHHHhCCCch---h--hHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHH
Q 015968          102 VLPFVGVACLGAILFGYH--LGVVNGALEYLAKDLGIAEN---T--VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF  174 (397)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l  174 (397)
                      .........+..+..+++  .+..+++...+.++...+..   .  ...+|+.+++.++..+++++.|+++|++|||+.+
T Consensus        43 ~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l  122 (513)
T KOG0254|consen   43 VILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTL  122 (513)
T ss_pred             hHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            344555556666676665  45556666677664322211   1  1237999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcC
Q 015968          175 QLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA  254 (397)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  254 (397)
                      +++.+++.++.+++++++|+++++++|++.|+|.|....+.+.|++|..|++.||...+..+....+|..++.+++....
T Consensus       123 ~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~  202 (513)
T KOG0254|consen  123 LLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTS  202 (513)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999977666554


Q ss_pred             CCCcchHHHHHHhHHHHHHHHHHhccCCCChHHHHHcCCHHHHHHHHHHHhC--CcchHHHHHHHHhhc-CC--CCCCcc
Q 015968          255 GNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYG--KERVSEVMLDLTNAG-QG--SAEPEA  329 (397)
Q Consensus       255 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~--~~~~~~  329 (397)
                      +...+||..+++..+.+++..+..+++||+|+|+.++++.+++++.++++++  +.+.+.+.++.+.+. .+  ..+.+.
T Consensus       203 ~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (513)
T KOG0254|consen  203 KVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKA  282 (513)
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccc
Confidence            3214899999999999988888888899999999999999999999999988  444444444443111 11  112223


Q ss_pred             chhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHcCCChh-HHHHHHHHHHHHHhhhhc
Q 015968          330 GWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD-VAASALVGAANVFGNYSI  395 (397)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~g~~~~  395 (397)
                      .+.++++...+++..++..+..+++++|++.+.+|.+.+++..|.... .....+.++.++++++++
T Consensus       283 ~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~  349 (513)
T KOG0254|consen  283 SWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVA  349 (513)
T ss_pred             cHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence            577777766888899999999999999999999999999999998865 566677777777777665

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.95  E-value=1.3e-26  Score=226.52  Aligned_cols=274  Identities=20%  Similarity=0.291  Sum_probs=200.3

Q ss_pred             chHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHh-----CCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHH
Q 015968          100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDL-----GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF  174 (397)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l  174 (397)
                      +..+.++.++.++.+..+++...++...+.+..++     +.+..+.  +++.+.+.+++.++.+++|+++||+|||+++
T Consensus        12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~   89 (502)
T TIGR00887        12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVS--AAVNGSASIGTLAGQLFFGWLADKLGRKRVY   89 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            34555777788889999999999998888887753     2233333  8999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHhhch------HHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHH
Q 015968          175 QLDAVPLAAGAFLCATAQS------VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALV  248 (397)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  248 (397)
                      .++.++..++.++++++++      ++.++++|++.|++.|..++....+++|++|+++|++++++.+.+..+|.++++.
T Consensus        90 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~  169 (502)
T TIGR00887        90 GMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAI  169 (502)
T ss_pred             HHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888765      7899999999999999999999999999999999999999999999999988888


Q ss_pred             HhhhcCC----------------------CCcchHHHHHHhHHHHHHHHHHhccCCCChHHHHHcCCHH-HHHHHHHHHh
Q 015968          249 AGLPLAG----------------------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKS-EAEKSIQTLY  305 (397)
Q Consensus       249 ~~~~l~~----------------------~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~  305 (397)
                      ++..+..                      ...+||+.|.+.++..++..+..+++||+|+|+..+++.+ ++.+.+.+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~  249 (502)
T TIGR00887       170 VALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVL  249 (502)
T ss_pred             HHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHh
Confidence            7764321                      1147999998888888877777888999999998877653 4555555554


Q ss_pred             CCcchHHHHHHHHhhcCCCCCCccchhhhhccch---hHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHcCCCh
Q 015968          306 GKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRY---WKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIES  376 (397)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  376 (397)
                      ..+..++ .++.++..+++++.+.+++++++.+.   .++..+.....++.....++.+..|.|.++++.|++.
T Consensus       250 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~  322 (502)
T TIGR00887       250 QVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSP  322 (502)
T ss_pred             ccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCC
Confidence            3221111 01111100111112235777776421   1122232222233333335566777899998888864

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=3.4e-27  Score=212.46  Aligned_cols=278  Identities=16%  Similarity=0.074  Sum_probs=217.3

Q ss_pred             cccCcchHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHH
Q 015968           95 AKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF  174 (397)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l  174 (397)
                      .+...+.++.++..++++....++....++.+.|.+.++.++|.++.  |++.+.+.++|.++.++.|.++||.+.|..+
T Consensus        20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l--G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm   97 (448)
T COG2271          20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL--GILGSAFSITYGVSKFVMGVLSDRSNPRYFM   97 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHhhhhcccCCCceee
Confidence            34445566778888888898888889999999999999999999999  9999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHh--hh
Q 015968          175 QLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAG--LP  252 (397)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~  252 (397)
                      .+++++.++.+++++++++.+.+.++.++.|+++|.-.|.+...++.||+++|||+..++++.+.++|+.+.|++.  +.
T Consensus        98 ~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~  177 (448)
T COG2271          98 AFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAF  177 (448)
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999888888  77


Q ss_pred             cCCCCcchHHHHHHhHHHHHHHHHHh-ccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhh-cCCCCCCccc
Q 015968          253 LAGNPLWWRTMFGLAAIPSILLALGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNA-GQGSAEPEAG  330 (397)
Q Consensus       253 l~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  330 (397)
                      +..+ .+||..|++.++++++..++. +..+|+|+..-                 -.+.++...+..+. .++++.+..+
T Consensus       178 ~~~~-~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~G-----------------LP~ie~~~~d~~e~~~~~~~~~~ls  239 (448)
T COG2271         178 FAFH-GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEG-----------------LPPIEEYRGDPLEIYEEEKENEGLT  239 (448)
T ss_pred             HHhc-cchhHHHHHHHHHHHHHHHHHHHHhCCCccccC-----------------CCCHHHhhcCchhhhhhhccCCCcc
Confidence            7766 699999999999997766554 44677776211                 01111111011110 1111111133


Q ss_pred             h-----hhhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH-cCCChh--HHHHHHHHHHHHHhhhhcc
Q 015968          331 W-----FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESD--VAASALVGAANVFGNYSIS  396 (397)
Q Consensus       331 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~~  396 (397)
                      .     +.+++++..|.+.++    .+..+..-+.+..|.|.++.+ .|++..  .....+.-.+++.|+++++
T Consensus       240 ~~~i~~~YVL~Nk~iW~la~a----~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~G  309 (448)
T COG2271         240 AWQIFVKYVLKNKLIWLLALA----NVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAG  309 (448)
T ss_pred             HHHHHHHHHHcChHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3     334455544444444    333344467899999999987 588865  5667777888899988764

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.95  E-value=8.2e-26  Score=219.30  Aligned_cols=294  Identities=39%  Similarity=0.637  Sum_probs=212.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCC--------chhhHHHHHHHHHHHHHHHHHHhhhhhhcccch
Q 015968           99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIA--------ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR  170 (397)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr  170 (397)
                      .++.+...+++.+..++..++...+....+.+..+++.+        ..+.  +++.+++.++..++++++|+++||+||
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~g~l~d~~gr  100 (481)
T TIGR00879        23 YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLW--GLVVSIFLVGGFIGALFAGWLSDRFGR  100 (481)
T ss_pred             cHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHH--HHHHHHHHHHHHHHHHHhhHhhhhhhh
Confidence            344555566666677777788888888888888888877        5555  999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHH
Q 015968          171 TRTFQLDAVPLAAGAFLCATA---QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL  247 (397)
Q Consensus       171 r~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  247 (397)
                      |++++++.++.+++.+++.+.   .+++.+++.|++.|++.+...+....++.|++|+++|++++++++.+..+|.++++
T Consensus       101 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~  180 (481)
T TIGR00879       101 KKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAY  180 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999888654   34568999999999999999999999999999999999999999999999999999


Q ss_pred             HHh---hhcCCCCcchHHHHHHhHHHHHHHHHHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHH----HHHHhh
Q 015968          248 VAG---LPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVM----LDLTNA  320 (397)
Q Consensus       248 ~~~---~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  320 (397)
                      +++   ...... .+||+.|++.++..++.++..+++||+|++...+++.++..+..++....++.+...    ......
T Consensus       181 ~~~~~~~~~~~~-~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (481)
T TIGR00879       181 GFGSGKVSLNNT-LGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIK  259 (481)
T ss_pred             HHHHHhhcCCCC-ccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence            998   555444 799999999777777776777788999988776666655555444433322111111    000000


Q ss_pred             c-CCCCCCccchhhhhccc--hhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHcCCChh--HHHHHHHHHHHHHhhhhc
Q 015968          321 G-QGSAEPEAGWFDLFSSR--YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAANVFGNYSI  395 (397)
Q Consensus       321 ~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~  395 (397)
                      . .+.+..+..+.++++..  ..++..+...+..+....+...+.+|.|.++++.|++..  .....+..++.+++.+++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  339 (481)
T TIGR00879       260 RSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVA  339 (481)
T ss_pred             HHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            0 00111112244444421  234555555555555555566778889999999998874  344445555556665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.95  E-value=8.1e-26  Score=206.20  Aligned_cols=253  Identities=22%  Similarity=0.255  Sum_probs=206.3

Q ss_pred             HHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHH
Q 015968          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (397)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~  182 (397)
                      +..++.+.++.|..+........++|.+.+|+|++..+.  |++++.|.++..++.++...+.||+.||++++..+.+++
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a--G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi   89 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA--GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFI   89 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            345556667777777778888889999999999999999  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHH
Q 015968          183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT  262 (397)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  262 (397)
                      ++++++++++||+.++++|++.|+..|.+++...++..++.|+++|++++++...+..++.++|..++.++.+. .|||+
T Consensus        90 ~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~-~GWR~  168 (394)
T COG2814          90 VSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL-FGWRA  168 (394)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH-hhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999887 99999


Q ss_pred             HHHHhHHHHHHHHHH-hccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhH
Q 015968          263 MFGLAAIPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK  341 (397)
Q Consensus       263 ~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (397)
                      .|++.++++++..+. +..+|  |+..  .+                              +...+..+..+++|++..+
T Consensus       169 ~F~~ia~l~ll~~~~~~~~lP--~~~~--~~------------------------------~~~~~~~~~~~~l~~p~v~  214 (394)
T COG2814         169 TFLAIAVLALLALLLLWKLLP--PSEI--SG------------------------------SLPGPLRTLLRLLRRPGVL  214 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCC--CccC--CC------------------------------CCCcchhHHHHHhcCchHH
Confidence            999999998776654 44567  1100  00                              0000111234566665555


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhHHHHHHH-cCCChh--HHHHHHHHHHHHHhhhhcc
Q 015968          342 VVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESD--VAASALVGAANVFGNYSIS  396 (397)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~~  396 (397)
                      ..++...+.    +.+.+....|+..++++ .|++.+  +.....+|++.++|+++++
T Consensus       215 ~~l~~t~l~----~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gG  268 (394)
T COG2814         215 LGLLATFLF----MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGG  268 (394)
T ss_pred             HHHHHHHHH----HcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHh
Confidence            544433333    34566677777667766 588876  7788889999999998875

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.95  E-value=1.3e-25  Score=213.84  Aligned_cols=183  Identities=16%  Similarity=0.131  Sum_probs=163.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHH
Q 015968          102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL  181 (397)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  181 (397)
                      .|..+.++++..++.+++...++...|.+++|+|++..+.  +++.+++.+++.+++++.|+++||+|||+++..+.+++
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF--GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            3556666677777888888888889999999999999988  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC-----
Q 015968          182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-----  256 (397)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----  256 (397)
                      +++.+++++++|++.+++.|++.|++.+...+....++.|++|+++|++++++++.+..+|.++++++++.+...     
T Consensus        84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  163 (412)
T TIGR02332        84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA  163 (412)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999999999999999998889999999999999999999999999999999998876531     


Q ss_pred             CcchHHHHHHhHHHHHHHH-HHhccCCCChH
Q 015968          257 PLWWRTMFGLAAIPSILLA-LGMGLSPESPR  286 (397)
Q Consensus       257 ~~~w~~~~~~~~~~~~~~~-~~~~~~~e~~~  286 (397)
                      ..|||+.|++.+++.++.. +..+++||+|+
T Consensus       164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            2689999999888876554 44556788874

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.94  E-value=1.9e-24  Score=210.44  Aligned_cols=266  Identities=17%  Similarity=0.211  Sum_probs=186.5

Q ss_pred             HHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhh---HHHH-HHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHH
Q 015968          105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTV---LQGW-IVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP  180 (397)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~  180 (397)
                      .+...+++.++.+++...++...|.+.++++.+.++.   ...+ +.++.++++.++++++|+++||+|||++++++.++
T Consensus        17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l   96 (490)
T PRK10642         17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI   96 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            4556678888999999999999999999997544321   1111 24778899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchHHH--------HHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhh
Q 015968          181 LAAGAFLCATAQSVQT--------MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP  252 (397)
Q Consensus       181 ~~~~~~~~~~~~~~~~--------~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  252 (397)
                      ++++.++++++++++.        ++++|+++|++.|+.++....+++|++|+++|+++.++...+..+|.++++.+...
T Consensus        97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~  176 (490)
T PRK10642         97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL  176 (490)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999874        89999999999999999999999999999999999999998888888777765433


Q ss_pred             cC----C---CCcchHHHHHHhHHHHHHHHHHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCC
Q 015968          253 LA----G---NPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSA  325 (397)
Q Consensus       253 l~----~---~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (397)
                      +.    +   ...|||+.|++.+++.++.+++...+||+|++...+++.++..                   ++.  ..+
T Consensus       177 ~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~-------------------~~~--~~~  235 (490)
T PRK10642        177 ISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD-------------------REG--LQD  235 (490)
T ss_pred             HHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc-------------------ccc--ccc
Confidence            22    1   1379999999977666655555567899988653221110000                   000  001


Q ss_pred             CCccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH-cCCChh--HHHHHHHHHHHHHhhh
Q 015968          326 EPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESD--VAASALVGAANVFGNY  393 (397)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~  393 (397)
                      +++.+++++++. +++.+.+..... +.....++.+..|+|.++++ .|++..  ........++.+++.+
T Consensus       236 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~  304 (490)
T PRK10642        236 GPKVSFKEIATK-HWRSLLTCIGLV-IATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQP  304 (490)
T ss_pred             cccCCHHHHHHH-hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            123346666664 333333333222 22233466777889998864 688764  2223333344444433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.94  E-value=5.8e-24  Score=202.16  Aligned_cols=187  Identities=23%  Similarity=0.303  Sum_probs=166.0

Q ss_pred             chHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhH
Q 015968          100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV  179 (397)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~  179 (397)
                      ++.|..+..++++.+..+++....+...+.+++++|++..+.  +++.+++.++..++.++.|+++||+|||++++++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA--ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            455666777788888888989999999999999999999888  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCC-c
Q 015968          180 PLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP-L  258 (397)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~  258 (397)
                      +.+++.++++++++++.+++.|++.|++.+..++...+++.|++|+++|++++++...+..+|.++++.+++.+.+.. .
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~  165 (405)
T TIGR00891        86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD  165 (405)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988876541 2


Q ss_pred             chHHHHHHhHHHHHHHHHHhccCCCChHHH
Q 015968          259 WWRTMFGLAAIPSILLALGMGLSPESPRWL  288 (397)
Q Consensus       259 ~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~  288 (397)
                      +||+.|++.++..++.++....+||++++.
T Consensus       166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  195 (405)
T TIGR00891       166 GWRALFFISILPIIFALWLRKNIPEAEDWK  195 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence            599999887766666655566678876543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.93  E-value=5.8e-24  Score=203.84  Aligned_cols=266  Identities=19%  Similarity=0.254  Sum_probs=195.0

Q ss_pred             HHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHH
Q 015968          104 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA  183 (397)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~  183 (397)
                      ..+..+++..+..+++.....+..|.+.+++|++..+.  +++.+++.+++.+++++.|+++||+|||++++++.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~   95 (426)
T PRK12307         18 NALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG--AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSV   95 (426)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            34566677777888888888889999999999999888  9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHH
Q 015968          184 GAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM  263 (397)
Q Consensus       184 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~  263 (397)
                      +.++++++++++.++++|++.|++.+..++....++.|++|+++|++++++...+..+|.++++.+.+.+.+. .+||+.
T Consensus        96 ~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~-~~w~~~  174 (426)
T PRK12307         96 GTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA-YGWRAA  174 (426)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc-CCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988887766 799999


Q ss_pred             HHHhHHHHHHHHHHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhHHH
Q 015968          264 FGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVV  343 (397)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (397)
                      |++.++..++...+....||++++..++.+            .++         ++.....+..+..++++++++..+..
T Consensus       175 f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~------------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (426)
T PRK12307        175 FFVGLLPVLLVIYIRARAPESKEWEEAKLS------------GKG---------KHSQSAWSVFSLSMKGLFNRAQFPLT  233 (426)
T ss_pred             HHHHHHHHHHHHHHHHHCCCChHHHHhhhh------------ccc---------cccccchhhhhHHHHHHHhhchHHHH
Confidence            987554443333332234555432211000            000         00000000112245677776655544


Q ss_pred             HHHHHHHHHHHhhhhHHHHHhHHHHHHHcCCChh--HHHHHHHHHHHHHhhhh
Q 015968          344 SVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAANVFGNYS  394 (397)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~  394 (397)
                      ....... +..+...+.+..++|.++++.|++..  .....+.+++.++|.++
T Consensus       234 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~  285 (426)
T PRK12307        234 LCVFIVL-FSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIV  285 (426)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4332222 22223334466788988888888765  33444555556665554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.93  E-value=2.2e-24  Score=201.62  Aligned_cols=220  Identities=15%  Similarity=0.082  Sum_probs=166.2

Q ss_pred             HhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHH
Q 015968          120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMII  199 (397)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  199 (397)
                      ...+++..|.+++|+|++..+.  |++.+.+.+++.+++++.|+++||+|||++++.+.+....+.+.....++++.+++
T Consensus         7 ~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~   84 (368)
T TIGR00903         7 WVTFSPVLSLVAEDIDVSKEEL--GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLA   84 (368)
T ss_pred             HHHHHhhHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            3455778999999999999888  99999999999999999999999999998876655555444333333479999999


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHH-Hh
Q 015968          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL-GM  278 (397)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~-~~  278 (397)
                      +|+++|++.+. .......++|++|+++|++++++...+..+|.++++++++.+.+. .|||+.|++.+++.++..+ ..
T Consensus        85 ~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~-~gWr~~f~~~~~l~~~~~~~~~  162 (368)
T TIGR00903        85 CQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA-GGLQLLIIPIAAVAAAGIILVL  162 (368)
T ss_pred             HHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHH
Confidence            99999999986 455566679999999999999999999999999999999998876 8999999998887755544 45


Q ss_pred             ccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhh
Q 015968          279 GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGI  358 (397)
Q Consensus       279 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (397)
                      +++||+|++..  ++.              +.++   .           ...++++++++..+.+.+.    .++.....
T Consensus       163 ~~lp~~p~~~~--~~~--------------~~~~---~-----------~~~~~~ll~~~~~~~~~~~----~~~~~~~~  208 (368)
T TIGR00903       163 AALPALPFQAA--EGF--------------GFKD---A-----------VKEFGALAGRKDLWIIGAI----LGFGVALF  208 (368)
T ss_pred             HHcCCCCCCCC--CCc--------------chHH---H-----------HHHHHHHHcChhHHHHHHH----HHHHHHHH
Confidence            56788875321  000              0000   0           0124567777655554433    33334446


Q ss_pred             HHHHHhHHHHHHHcCCChh
Q 015968          359 NAVVYYSTSVFRSVGIESD  377 (397)
Q Consensus       359 ~~~~~~~~~~~~~~g~~~~  377 (397)
                      +.+..|+|.++++.|++..
T Consensus       209 ~~~~~wlp~~L~~~g~s~~  227 (368)
T TIGR00903       209 DNLAIWLEAALRPAGLEDI  227 (368)
T ss_pred             HHHHHHHHHHHHHCCCChH
Confidence            7788899999998888754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.93  E-value=2.7e-24  Score=206.36  Aligned_cols=179  Identities=17%  Similarity=0.177  Sum_probs=156.4

Q ss_pred             HHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHH
Q 015968          105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG  184 (397)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~  184 (397)
                      +...+++..+...++...++...|.+.+++|++..+.  +++.+.+.+++.+++++.|+++||+|||+++.++.++.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~  101 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI--GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGII  101 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHH
Confidence            4444555566666666666778999999999999888  99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHH
Q 015968          185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF  264 (397)
Q Consensus       185 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~  264 (397)
                      .++++++++++.+++.|++.|++.|..++....++.|++|+++|++++++++.+..+|.++++.+.+.+.+. .+||+.|
T Consensus       102 ~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gw~~~f  180 (434)
T PRK11663        102 NILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH-YGWRYGM  180 (434)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccHHHHH
Confidence            999999999999999999999999988898999999999999999999999999999999999999888776 7999999


Q ss_pred             HHhHHHHHHHH-HHhccCCCChH
Q 015968          265 GLAAIPSILLA-LGMGLSPESPR  286 (397)
Q Consensus       265 ~~~~~~~~~~~-~~~~~~~e~~~  286 (397)
                      ++.+++.++.. +..++++|+|+
T Consensus       181 ~~~~i~~~~~~~~~~~~~~~~p~  203 (434)
T PRK11663        181 MIAGIIAIVVGLFLCWRLRDKPQ  203 (434)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHh
Confidence            98887765544 34445677765

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.93  E-value=7.1e-24  Score=206.68  Aligned_cols=181  Identities=17%  Similarity=0.157  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHH
Q 015968          102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL  181 (397)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  181 (397)
                      .|..+..++++.++..++.++++...|.+.+++|.+.++.  +|+.+.|.+++.++.+++|+++||+|||++++++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~--~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~   81 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL--LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLF   81 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            4567888899999999999999999999999999998888  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhccc-CcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcch
Q 015968          182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW  260 (397)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  260 (397)
                      +++++++++++|++.++++|+++|++.+...+.....+.+.+ |+++|+++++++.....+|..+||.+++.+.+. .+|
T Consensus        82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~-~gw  160 (495)
T PRK14995         82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH-FYW  160 (495)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCh
Confidence            999999999999999999999999999998888777777766 678899999999999999999999999999887 899


Q ss_pred             HHHHHHhHHHHHHHHH-HhccCCCCh
Q 015968          261 RTMFGLAAIPSILLAL-GMGLSPESP  285 (397)
Q Consensus       261 ~~~~~~~~~~~~~~~~-~~~~~~e~~  285 (397)
                      ||.|++...+.++.++ ..+++|+++
T Consensus       161 r~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        161 GSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999998777655544 344567654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.93  E-value=1.6e-23  Score=198.25  Aligned_cols=231  Identities=22%  Similarity=0.194  Sum_probs=175.9

Q ss_pred             hchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHH
Q 015968          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGR  201 (397)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r  201 (397)
                      ...+..|.+.+++|.+.++.  ++..+.+.++..+++++.|+++||+|||++++.+.++.+++.++++++++++.++++|
T Consensus        38 ~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  115 (394)
T PRK10213         38 LPVSLLTPMAQDLGISEGVA--GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGR  115 (394)
T ss_pred             HHHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence            33456788999999999888  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhc-c
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG-L  280 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~-~  280 (397)
                      ++.|++.+...+....++.|++|+++|++++++...+..+|.+++|.+++.+.+. .+||+.|++.+++.++..+... .
T Consensus       116 ~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~-~gw~~~f~~~~~l~~~~~l~~~~~  194 (394)
T PRK10213        116 ACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL-IGWRNVFNAAAVMGVLCIFWIIKS  194 (394)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998876 7999999988776655444332 3


Q ss_pred             CCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhhHH
Q 015968          281 SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINA  360 (397)
Q Consensus       281 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (397)
                      .||+++.     + +                              +.....++.++++..+...+......    .+.+.
T Consensus       195 ~p~~~~~-----~-~------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~  234 (394)
T PRK10213        195 LPSLPGE-----P-S------------------------------HQKQNTFRLLQRPGVMAGMIAIFMSF----AGQFA  234 (394)
T ss_pred             CCCCCcc-----c-c------------------------------cchhHHHHHhcCHHHHHHHHHHHHHH----HHHHH
Confidence            5554310     0 0                              00111234555554444333222222    22333


Q ss_pred             HHHh-HHHHHHHcCCChh--HHHHHHHHHHHHHhhhhc
Q 015968          361 VVYY-STSVFRSVGIESD--VAASALVGAANVFGNYSI  395 (397)
Q Consensus       361 ~~~~-~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~  395 (397)
                      ...| .|.+.++.|++..  .......+++.++|.++.
T Consensus       235 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~  272 (394)
T PRK10213        235 FFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLS  272 (394)
T ss_pred             HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHH
Confidence            3444 4777777888875  444555666666666543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.93  E-value=1.9e-23  Score=200.49  Aligned_cols=185  Identities=18%  Similarity=0.243  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhC---CCchhh-HHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHh
Q 015968          102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLG---IAENTV-LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLD  177 (397)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~  177 (397)
                      ++..+..++++.++.+++...++...|.+.++++   .+..+. ..+.+.+..+++..++++++|+++||+|||+++.++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~   99 (432)
T PRK10406         20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS   99 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            4445666677888899999999999999999985   444332 112233444455559999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhchHH--------HHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHH
Q 015968          178 AVPLAAGAFLCATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVA  249 (397)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  249 (397)
                      .++++++++++++++++.        .++++|+++|++.|+.++...++++|++|+++|+++.++...+..+|.++++++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~  179 (432)
T PRK10406        100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV  179 (432)
T ss_pred             HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988764        589999999999999999999999999999999999999888888888877766


Q ss_pred             hhhcCC-------CCcchHHHHHHhHHHHHHHHHHhccCCCChH
Q 015968          250 GLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPR  286 (397)
Q Consensus       250 ~~~l~~-------~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~  286 (397)
                      ...+..       ...|||+.|++.+++.++..++...+||+++
T Consensus       180 ~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~  223 (432)
T PRK10406        180 VVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQ  223 (432)
T ss_pred             HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence            544321       1279999999888777666555555677654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.93  E-value=1.5e-23  Score=199.62  Aligned_cols=185  Identities=26%  Similarity=0.394  Sum_probs=165.6

Q ss_pred             chHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhH
Q 015968          100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV  179 (397)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~  179 (397)
                      ++.|.++.++++..++.+++....+...|.+.+++|.+..+.  +++.+.+.++..++.++.|+++||+|||++++.+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   88 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM--GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA   88 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence            466778888888888999999888889999999999998888  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 015968          180 PLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW  259 (397)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  259 (397)
                      +.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++++.+..+|..+++.+++.+.+. .+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~  167 (406)
T PRK11551         89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD-AA  167 (406)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-cC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998877765 78


Q ss_pred             hHHHHHHhHHHHHHHHH-HhccCCCChHH
Q 015968          260 WRTMFGLAAIPSILLAL-GMGLSPESPRW  287 (397)
Q Consensus       260 w~~~~~~~~~~~~~~~~-~~~~~~e~~~~  287 (397)
                      |++.|++.+++.++.++ ..+++||++++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  196 (406)
T PRK11551        168 WRHIFYVGGVGPLLLVPLLMRWLPESRAF  196 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence            99999988776655443 44557887754

>PRK03545 putative arabinose transporter; Provisional

Probab=99.93  E-value=8.4e-24  Score=200.31  Aligned_cols=174  Identities=19%  Similarity=0.158  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHH
Q 015968          108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL  187 (397)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~  187 (397)
                      .+.+..+..........+..|.+.+++|.+..+.  +++.+.+.+++.+++++.|+++||+|||+++..+.++.++++++
T Consensus        13 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   90 (390)
T PRK03545         13 TLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV--GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVL   90 (390)
T ss_pred             HHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence            3333333333333344556799999999999988  99999999999999999999999999999999999999999999


Q ss_pred             HHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHh
Q 015968          188 CATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA  267 (397)
Q Consensus       188 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~  267 (397)
                      +++++|++.++++|+++|++.+..++...+++.|++|+++|+++++++..+..+|.+++|.+++.+.+. .|||+.|++.
T Consensus        91 ~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~-~gw~~~f~~~  169 (390)
T PRK03545         91 SALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY-LGWRTTFLAI  169 (390)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH-hcHHHHHHHH
Confidence            999999999999999999999888898899999999999999999999999999999999999988766 7999999998


Q ss_pred             HHHHHHHHHH-hccCCCC
Q 015968          268 AIPSILLALG-MGLSPES  284 (397)
Q Consensus       268 ~~~~~~~~~~-~~~~~e~  284 (397)
                      +++.++..+. ..++||.
T Consensus       170 ~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        170 GGGALITLLLLIKLLPLL  187 (390)
T ss_pred             HHHHHHHHHHHHHhCCCC
Confidence            8877665544 3335554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.93  E-value=1.8e-23  Score=199.17  Aligned_cols=180  Identities=17%  Similarity=0.214  Sum_probs=157.0

Q ss_pred             HHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHH
Q 015968          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (397)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~  182 (397)
                      ......+.+..+...+....+.+.+|.+.+++|.+.+..  ++..+++.++++++++++|+++||+|||++++.+.++++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~   92 (413)
T PRK15403         15 LFFPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA--PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFT   92 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHH
Confidence            334444456666666777788889999999999998888  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHH
Q 015968          183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT  262 (397)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  262 (397)
                      ++.++++++++++.++++|+++|++.+...+....++.|++++++|+++++++..+..+|..+||++++.+.+. .+||+
T Consensus        93 ~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~-~gw~~  171 (413)
T PRK15403         93 LACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF-VHWKV  171 (413)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHH
Confidence            99999999999999999999999998876777778899999999999999999999999999999999888765 79999


Q ss_pred             HHHHhHHHHHHHHHH-hccCCCCh
Q 015968          263 MFGLAAIPSILLALG-MGLSPESP  285 (397)
Q Consensus       263 ~~~~~~~~~~~~~~~-~~~~~e~~  285 (397)
                      .|++.+++.++..+. .+++||++
T Consensus       172 ~f~~~~~~~~i~~~~~~~~lp~~~  195 (413)
T PRK15403        172 LFAIIAVMGLIAFVGLLLAMPETV  195 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999988887666554 44578764

>TIGR00895 2A0115 benzoate transport

Probab=99.93  E-value=1.5e-23  Score=198.63  Aligned_cols=288  Identities=21%  Similarity=0.313  Sum_probs=199.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHH
Q 015968          102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL  181 (397)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  181 (397)
                      .+..+..+++..+..+++.....+..|.+.+++|.+..+.  +++.+.+.++..++.++.|+++||+|||+++..+.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~   92 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF   92 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH--HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence            3445555556666666667777778999999999998888  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchH
Q 015968          182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR  261 (397)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  261 (397)
                      +++.++..+.++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+. .+|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~~  171 (398)
T TIGR00895        93 SVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV-FGWR  171 (398)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc-ccce
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988876 7999


Q ss_pred             HHHHHhHHHHHH-HHHHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchh
Q 015968          262 TMFGLAAIPSIL-LALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYW  340 (397)
Q Consensus       262 ~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (397)
                      +.|++.+++.++ .++..+++||++++..++ +.++..+..++.......+.+ ++..+..++.+..+..++.+++.+..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (398)
T TIGR00895       172 SLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ-SALPEQKATQGTKRSVFKALFQGKTA  249 (398)
T ss_pred             eehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc-ccccccccccchhhHHHHHHhcchhH
Confidence            999888655544 444556678887655443 222222222221111000000 00000000000111112223333333


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHcCCChh--HHHHHHHHHHHHHhhhhc
Q 015968          341 KVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAANVFGNYSI  395 (397)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~  395 (397)
                      +........ .+......+....|.|++.++.|++..  .....+..++.+++.+++
T Consensus       250 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  305 (398)
T TIGR00895       250 RITVLLWLL-YFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIF  305 (398)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            333322222 223333456677788888888888765  444555556666665543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.93  E-value=6.7e-26  Score=206.00  Aligned_cols=186  Identities=21%  Similarity=0.288  Sum_probs=170.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhh
Q 015968           99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA  178 (397)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~  178 (397)
                      .+..+..+.++++...+++.+...+....+.+++.+|++++..  |++.+.+.+.+.+++|++|+++||+.||.++.+|.
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~--Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~  105 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL--GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGI  105 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc--cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHH
Confidence            3444567778889999999999999999999999999999888  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCc
Q 015968          179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL  258 (397)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  258 (397)
                      .+|.++.+++++++.+|+++++|.+.|+|.+.+.++++.+++|.||..+|++++++++.+..+|..+|.+++..+.+...
T Consensus       106 ~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~  185 (493)
T KOG1330|consen  106 FIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF  185 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             chHHHHHHhHHHHHHHHHHhcc-CCCChH
Q 015968          259 WWRTMFGLAAIPSILLALGMGL-SPESPR  286 (397)
Q Consensus       259 ~w~~~~~~~~~~~~~~~~~~~~-~~e~~~  286 (397)
                      .|||.|+..+++++++.++.++ .+|+++
T Consensus       186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  186 WWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             ceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            6999999999999887766554 555543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.93  E-value=1.4e-24  Score=210.25  Aligned_cols=185  Identities=16%  Similarity=0.078  Sum_probs=156.4

Q ss_pred             chHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhH
Q 015968          100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV  179 (397)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~  179 (397)
                      +..+.++.++++..+..+.+...++...|.+.+++|++..+.  |++.+.+.+++.+++++.|+++||+|||+++.++.+
T Consensus        25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~  102 (467)
T PRK09556         25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL--GMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI  102 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence            345666777777777778888888889999999999999888  999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHh-----hchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcC
Q 015968          180 PLAAGAFLCAT-----AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA  254 (397)
Q Consensus       180 ~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  254 (397)
                      +++++.++.++     +++++.++++|++.|++.+...+....+++|++|+++||++++++..+..+|.++++++...+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~  182 (467)
T PRK09556        103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA  182 (467)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence            88877766654     5899999999999999999999999999999999999999999999999999999988876554


Q ss_pred             CC--CcchHHHHHHhHHHHHHHHHH-hccCCCChH
Q 015968          255 GN--PLWWRTMFGLAAIPSILLALG-MGLSPESPR  286 (397)
Q Consensus       255 ~~--~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~  286 (397)
                      ..  ..+||..|.+.+++.++..++ +++.+++|+
T Consensus       183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~  217 (467)
T PRK09556        183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE  217 (467)
T ss_pred             HhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence            42  136999988888777655544 344566654

>TIGR00898 2A0119 cation transport protein

Probab=99.92  E-value=3.7e-24  Score=209.64  Aligned_cols=222  Identities=24%  Similarity=0.403  Sum_probs=178.1

Q ss_pred             hhHHHHHHHhCCC---chhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHH
Q 015968          125 GALEYLAKDLGIA---ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGR  201 (397)
Q Consensus       125 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r  201 (397)
                      ...+.+.+|++++   ..+.  +++.+++.+++.++.+++|+++||+|||++++++.++.+++.++++++++++.++++|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~--~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKV--DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHH--HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            3567788999998   6666  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhccC
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS  281 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~  281 (397)
                      ++.|++.+...+....++.|++|+++|+.+.++...+..+|.++++++++.+.    +||+.|++.+++.++..+..+++
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999987663    49999999988887777777889


Q ss_pred             CCChHHHHHcCCHHHHHHHHHHHhCCcch--HHHHHHHH-hhcCCCCCCccchhhhhccchhHHHHHHHHHHHH
Q 015968          282 PESPRWLFQQGKKSEAEKSIQTLYGKERV--SEVMLDLT-NAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLF  352 (397)
Q Consensus       282 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (397)
                      ||+|+|+..+++.+++.+.+++....+..  ..+..+.. ++..+.++++.+++++++++..+...+...+.++
T Consensus       264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  337 (505)
T TIGR00898       264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF  337 (505)
T ss_pred             CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHH
Confidence            99999999888888877776665432211  11111111 1111111224577888888766666555544444

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.92  E-value=8e-24  Score=205.13  Aligned_cols=276  Identities=14%  Similarity=0.048  Sum_probs=199.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhHhhchhhHHHHHH----------------------HhCCCchhhHHHHHHHHHHHHHH
Q 015968           98 SSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAK----------------------DLGIAENTVLQGWIVSSLLAGAT  155 (397)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~  155 (397)
                      ..+.++.++.+++++..+.+.+...++...+.+.+                      +++++..+.  |++.+.+.+++.
T Consensus        13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~   90 (465)
T TIGR00894        13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ--GLILSSHFYGQI   90 (465)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh--hHHHHHHHHHHH
Confidence            34445667777777777778888887777777766                      788888877  999999999999


Q ss_pred             HHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh--chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhh
Q 015968          156 VGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGS  233 (397)
Q Consensus       156 i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~  233 (397)
                      +++++.|+++||+|||+++.++.++++++.+++.++  .+++.+++.|+++|++.+..++....++.|++|+++|+++++
T Consensus        91 ~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~  170 (465)
T TIGR00894        91 IIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLG  170 (465)
T ss_pred             HHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHH
Confidence            999999999999999999999999999988876543  568889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhcc-CCCChHHHHHcCCHHHHHHHHHHHhCCcchHH
Q 015968          234 VNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSE  312 (397)
Q Consensus       234 ~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (397)
                      +...+..+|.++++++++.+.+...+||+.|++.+++.++..+++++ .+|+|+... +.++++. +..           
T Consensus       171 ~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~-~~i-----------  237 (465)
T TIGR00894       171 MSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-CISKFEK-KYI-----------  237 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC-CCCHHHH-HHH-----------
Confidence            99999999999999999888765249999999998888766655544 456554211 1111111 000           


Q ss_pred             HHHHHHhhcCCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH-cCCChh--HHHHHHHHHHHH
Q 015968          313 VMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESD--VAASALVGAANV  389 (397)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~  389 (397)
                        ++..++.+++.+++..++++++++..+...+    ..+....+.+.+..|+|.++++ .|++..  +....+..++.+
T Consensus       238 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~  311 (465)
T TIGR00894       238 --NSSLQGQKGSTRQSLPIKAIPKSLPVWAIWF----AIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAW  311 (465)
T ss_pred             --HhhcccccCCCCCCCCHHHHhcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHH
Confidence              0000000111122345777777755444333    3334444567788899999876 588764  334444455555


Q ss_pred             Hhhhh
Q 015968          390 FGNYS  394 (397)
Q Consensus       390 ~g~~~  394 (397)
                      ++.++
T Consensus       312 i~~~~  316 (465)
T TIGR00894       312 LCSIF  316 (465)
T ss_pred             HHHHH
Confidence            55444

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.92  E-value=5e-23  Score=195.01  Aligned_cols=250  Identities=13%  Similarity=0.124  Sum_probs=183.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHH
Q 015968          102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL  181 (397)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  181 (397)
                      .|.+...++.+.+.... ....++..|.+++|+|++..+.  +++.+.+.+++.+++++.|+++||+|||+++..+.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~   84 (393)
T PRK09705          8 NFMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVA--ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLI   84 (393)
T ss_pred             HHHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHH
Confidence            34444444444444333 3556789999999999999988  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchH
Q 015968          182 AAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR  261 (397)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  261 (397)
                      +++.++++++++++.+++.|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++.+.++..+||
T Consensus        85 ~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~  163 (393)
T PRK09705         85 AVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWY  163 (393)
T ss_pred             HHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            9999999999999999999999999999999999999999997 779999999999999999999999888777645899


Q ss_pred             HHHHHhHHHHHHHHHHhccC-CCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchh
Q 015968          262 TMFGLAAIPSILLALGMGLS-PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYW  340 (397)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (397)
                      +.+.+.++..++.++..++. ++.|+     .+                            + +  ++.+..+.++++..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----------------------------~-~--~~~~~~~~l~~~~~  207 (393)
T PRK09705        164 QTLAWWALPAVVALFAWWWQSAREVA-----SS----------------------------H-K--TTTTPVRVVFTPRA  207 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCc-----cc----------------------------c-C--CCcCCcccccCHhH
Confidence            98876665544433332221 11110     00                            0 0  00111233344333


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHcCCChh--HHHHHHHHHHHHHhhhhc
Q 015968          341 KVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAANVFGNYSI  395 (397)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~  395 (397)
                      +...+..    +....++..+..|.|.++++.|++..  .....+.+++.++|.++.
T Consensus       208 ~~l~~~~----~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~  260 (393)
T PRK09705        208 WTLGVYF----GLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLM  260 (393)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHH
Confidence            3322222    22223456777889999998888765  455666777777776654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.92  E-value=7.3e-23  Score=197.48  Aligned_cols=182  Identities=18%  Similarity=0.176  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHH
Q 015968          102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL  181 (397)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  181 (397)
                      .|.++..+++.......+...++...|++.++ |++..+.  +++.+.+.++++++++++|+++||+|||++++++.++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~--g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~  103 (452)
T PRK11273         27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  103 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH--HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHH
Confidence            34444444455555555544556678888888 9999888  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh----chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHH-HHHHHHhhhcCCC
Q 015968          182 AAGAFLCATA----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI-LAALVAGLPLAGN  256 (397)
Q Consensus       182 ~~~~~~~~~~----~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~  256 (397)
                      +++.++++++    .+++.+++.|++.|++.+..++.....+.|++|+++|++++++++.+..+|. +.+++++..+...
T Consensus       104 ~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  183 (452)
T PRK11273        104 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF  183 (452)
T ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            9999888775    3788899999999999998888888889999999999999999999998886 5566654333333


Q ss_pred             CcchHHHHHHhHHHHHHH-HHHhccCCCChHH
Q 015968          257 PLWWRTMFGLAAIPSILL-ALGMGLSPESPRW  287 (397)
Q Consensus       257 ~~~w~~~~~~~~~~~~~~-~~~~~~~~e~~~~  287 (397)
                       .+||+.|++.+++.++. ++..+++||+|+.
T Consensus       184 -~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~  214 (452)
T PRK11273        184 -NDWHAALYMPAFAAILVALFAFAMMRDTPQS  214 (452)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHHHHccCCHhh
Confidence             58999999988776554 4455667887653

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.91  E-value=2.6e-22  Score=194.57  Aligned_cols=168  Identities=13%  Similarity=0.117  Sum_probs=135.7

Q ss_pred             HHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh
Q 015968          112 GAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA  191 (397)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~  191 (397)
                      ..+...+......+..|.+.+++|++.++.  +++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++
T Consensus        44 ~~~~~~~~~~~~~~~~~~l~~~~gls~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~  121 (476)
T PLN00028         44 SFFTCFVSTFAAAPLLPIIRDNLNLTKSDI--GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV  121 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence            333334444455678899999999999888  899999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcC----C----CCcchHHH
Q 015968          192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA----G----NPLWWRTM  263 (397)
Q Consensus       192 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~----~----~~~~w~~~  263 (397)
                      ++++.++++|++.|++.+... ....+++|++|+++|+.++++.+.+..+|..+++.+.+.+.    .    ...|||+.
T Consensus       122 ~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~  200 (476)
T PLN00028        122 SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIA  200 (476)
T ss_pred             cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHH
Confidence            999999999999999887654 45568899999999999999998777777666655543331    1    12589999


Q ss_pred             HHHhHHHHHHHHHHhccCC
Q 015968          264 FGLAAIPSILLALGMGLSP  282 (397)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~  282 (397)
                      |++.+++.++..+..++++
T Consensus       201 f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        201 FFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999888876665555544

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.91  E-value=4e-23  Score=195.32  Aligned_cols=261  Identities=18%  Similarity=0.143  Sum_probs=186.6

Q ss_pred             HHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHH
Q 015968          116 FGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQ  195 (397)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~  195 (397)
                      ..++...++...|.+.+++|.+..+.  +++.+++.++..++.++.|+++||+|||+++.++.++.+++.++++++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~   83 (399)
T TIGR00893         6 NYLDRANLSFAAPMLQEDLGLSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYV   83 (399)
T ss_pred             HHHHHHhhhHhHHHHHHhhCCChhhH--HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHH
Confidence            34455566778899999999999888  9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHH
Q 015968          196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA  275 (397)
Q Consensus       196 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  275 (397)
                      .++++|++.|++.+...+....++.|++|+++|++++++......+|.++++.+++.+.+. .+||+.|++.+++.++..
T Consensus        84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH-FSWQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999987766 789999998888776655


Q ss_pred             HHh-ccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhHHHHHHHHHHHHHH
Q 015968          276 LGM-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQ  354 (397)
Q Consensus       276 ~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (397)
                      +.. ++.||+++... ..+.++.....++..          ...++.++++++....++.++++..+...+...    ..
T Consensus       163 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  227 (399)
T TIGR00893       163 VLWLKFIPDPPQKAK-WLTEEEKYIVVGGLL----------AEQQGKGPSTPKKYQIKELLKDRRVWGLALGQF----LV  227 (399)
T ss_pred             HHhhheecCCCCccc-cCCHHHHhhcchhhc----------cccccccccCCCccchHHHhcCHHHHHHHHHHH----HH
Confidence            544 34566543110 001111000000000          000011111122334566666654443333322    22


Q ss_pred             hhhhHHHHHhHHHHHHH-cCCChh--HHHHHHHHHHHHHhhhh
Q 015968          355 LAGINAVVYYSTSVFRS-VGIESD--VAASALVGAANVFGNYS  394 (397)
Q Consensus       355 ~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~  394 (397)
                      ......+..|.|.++++ .|++..  .......+++.+++.++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (399)
T TIGR00893       228 NIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMIL  270 (399)
T ss_pred             HhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHH
Confidence            23355667778888765 577654  34444555555555544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.91  E-value=1.5e-23  Score=199.61  Aligned_cols=280  Identities=16%  Similarity=0.144  Sum_probs=204.0

Q ss_pred             chHHHHHHHHHHHHHHHHHhHhhchh-hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhh
Q 015968          100 GVVLPFVGVACLGAILFGYHLGVVNG-ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA  178 (397)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~  178 (397)
                      +-.+.++..++...+....+...++. .+..+.+|.+...++.  +++.++++++++++.++++.+.||++-.+.+....
T Consensus        41 K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l--~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~  118 (495)
T KOG2533|consen   41 KLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL--GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSG  118 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh--hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHH
Confidence            33445555556666666665554322 2233558888888888  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCC---
Q 015968          179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---  255 (397)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---  255 (397)
                      +++++..++....+|++.+++.|++.|+.++..+|....+++.||.+++|+..++++.+...+|.++|.+++..+..   
T Consensus       119 ~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~  198 (495)
T KOG2533|consen  119 ILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG  198 (495)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC
Confidence            99999998888899999999999999999999999999999999999999999999999999999999999988532   


Q ss_pred             --CCcchHHHHHHhHHHHHHHHHH-hccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchh
Q 015968          256 --NPLWWRTMFGLAAIPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWF  332 (397)
Q Consensus       256 --~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (397)
                        ...||||.|++.+++.++..++ .+++|+.|.... -.+.+|..-..++.          ++......+++.+...++
T Consensus       199 ~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~-fl~~~ek~~~~~~~----------~~~~~~~~~~~~~~~~~~  267 (495)
T KOG2533|consen  199 SGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAW-FLTDEEKELVVERL----------RESPSGGIENKFKWKGFK  267 (495)
T ss_pred             CCCcCCceeehhHHHHHHHHHHheEEEEecCChhhcc-ccchHHHHHHHHHH----------HhccCCCcccccCHHHHH
Confidence              2378999999999998777654 556899886220 00111100001110          011111111113345567


Q ss_pred             hhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH-cCCChh--HHHHHHHHHHHHHhhhhcc
Q 015968          333 DLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESD--VAASALVGAANVFGNYSIS  396 (397)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~~  396 (397)
                      +.++++..|...+..+..    ....+.+.+|+|.++++ .|++..  ........++++++.++++
T Consensus       268 ~a~~dp~vw~~~l~~~~~----~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag  330 (495)
T KOG2533|consen  268 EALKDPGVWPFSLCYFFL----KLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAG  330 (495)
T ss_pred             HHHhchhHHHHHHHHHHH----hhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHH
Confidence            777776666655444333    33367799999999998 457654  5566677777777777654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.91  E-value=7.6e-28  Score=232.40  Aligned_cols=286  Identities=37%  Similarity=0.640  Sum_probs=223.0

Q ss_pred             HHHHHHHHHhHhhchhhHHHHH--HHhCCCch-------hhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHH
Q 015968          110 CLGAILFGYHLGVVNGALEYLA--KDLGIAEN-------TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP  180 (397)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~  180 (397)
                      .++.+..+++...++...+...  ..+..+..       +...+++.+...+|..+|.+++|.++||+|||+.++++.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            4455777777777666555444  22222221       12347899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc---hHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC-
Q 015968          181 LAAGAFLCATAQ---SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-  256 (397)
Q Consensus       181 ~~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-  256 (397)
                      ..++.++.++++   +++.+.++|++.|++.|+..+....++.|..|+++|+...++.+.+..+|.+++.+++..+... 
T Consensus        86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  165 (451)
T PF00083_consen   86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS  165 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999   9999999999999999999999999999999999999999999999999999888887655332 


Q ss_pred             -CcchHHHHHHhHHHHHHHHHHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhh
Q 015968          257 -PLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLF  335 (397)
Q Consensus       257 -~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (397)
                       ..+||+.+++..+++++..+..+++||+|+|+..+++.+++++.+++.++.+..+++.++..++.++.++++..+++++
T Consensus       166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  245 (451)
T PF00083_consen  166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLF  245 (451)
T ss_pred             ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence             1359999999999988887778889999999999999999999888876664444444333333333333346788888


Q ss_pred             ccc-hhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhhhc
Q 015968          336 SSR-YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESDVAASALVGAANVFGNYSI  395 (397)
Q Consensus       336 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~  395 (397)
                      +.+ +++++.+...+..+.++.+.+.+.+|.+.++++.|.+.......+.++..+++.+++
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (451)
T PF00083_consen  246 RNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLA  306 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            875 366777777777777788888888999999988888776344445555555555443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.91  E-value=1.4e-22  Score=197.62  Aligned_cols=178  Identities=26%  Similarity=0.375  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHH
Q 015968          105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG  184 (397)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~  184 (397)
                      ++..++++.++..++....+...|.+.+++|.+..+.  +|+.+.+.++..++.++.|+++||+|||++++++.++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   80 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV--QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh--hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            3455666777778888888889999999999998888  99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHH
Q 015968          185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF  264 (397)
Q Consensus       185 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~  264 (397)
                      .++++++++++.+++.|+++|++.+...+....++.|++|+++|+++++++..+..+|..++|.+++.+.+. .+||+.|
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~w~~~f  159 (485)
T TIGR00711        81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN-YHWRWIF  159 (485)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC-cCceehh
Confidence            999999999999999999999999999999999999999999999999999999999999999999998876 8999999


Q ss_pred             HHhHHHHHHHHHH-hccCCCCh
Q 015968          265 GLAAIPSILLALG-MGLSPESP  285 (397)
Q Consensus       265 ~~~~~~~~~~~~~-~~~~~e~~  285 (397)
                      ++.+++.++..++ .+++||++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~  181 (485)
T TIGR00711       160 LINVPIGIIVVVVAFFILPRDK  181 (485)
T ss_pred             hhhhHHHHHHHHHHHHHcCCcc
Confidence            9988777655543 34456643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03699 putative transporter; Provisional

Probab=99.91  E-value=9.3e-22  Score=186.53  Aligned_cols=173  Identities=13%  Similarity=0.128  Sum_probs=150.5

Q ss_pred             HHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHH
Q 015968          105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG  184 (397)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~  184 (397)
                      +...+++..+..+......+...|.+.+++|++..+.  +++.+.+.+++.+++++.|+++||+|||++++.+.++.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~   85 (394)
T PRK03699          8 LTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM--SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILA   85 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4445556666666767777888999999999999888  99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHH
Q 015968          185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF  264 (397)
Q Consensus       185 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~  264 (397)
                      .++++++++++.+++.|++.|++.+...+....++.|++|+++|+.+++..+....+|..++|.+.+.+.....+||+.|
T Consensus        86 ~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f  165 (394)
T PRK03699         86 VAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVY  165 (394)
T ss_pred             HHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            99999999999999999999999998888889999999999999999999888888998898888877655447999999


Q ss_pred             HHhHHHHHHHHHHhc
Q 015968          265 GLAAIPSILLALGMG  279 (397)
Q Consensus       265 ~~~~~~~~~~~~~~~  279 (397)
                      ++.+++.++..++.+
T Consensus       166 ~~~~~~~~~~~~~~~  180 (394)
T PRK03699        166 ACIGLVYVAIFILTL  180 (394)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            988877765554433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.90  E-value=8.5e-22  Score=189.13  Aligned_cols=164  Identities=20%  Similarity=0.263  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHH-HHHH-----HHHHHHHHHhhhhhhcccchHHHHHHhh
Q 015968          105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWI-VSSL-----LAGATVGSFTGGSLADKFGRTRTFQLDA  178 (397)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~i~~~~~g~l~d~~Grr~~l~~~~  178 (397)
                      ....++++.++.+++...++...|.+.++++.++.+.  +.+ .+..     .++..+++++.|+++||+|||++++.+.
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   93 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEF--ASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTL   93 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCch--HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHH
Confidence            5677788999999999999999999999999887664  332 2222     2233578899999999999999999999


Q ss_pred             HHHHHHHHHHHhhchHH--------HHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHh
Q 015968          179 VPLAAGAFLCATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAG  250 (397)
Q Consensus       179 ~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  250 (397)
                      ++++++.++++++++++        .++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.++
T Consensus        94 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g  173 (434)
T PRK15075         94 SIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLG  173 (434)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999877        4689999999999999998899999999999999999999888888877777776


Q ss_pred             hhcCC-------CCcchHHHHHHhHHH
Q 015968          251 LPLAG-------NPLWWRTMFGLAAIP  270 (397)
Q Consensus       251 ~~l~~-------~~~~w~~~~~~~~~~  270 (397)
                      +.+..       ...|||+.|++..+.
T Consensus       174 ~~l~~~~~~~~~~~~gWr~~f~~~~~~  200 (434)
T PRK15075        174 YLLNQWLSPAQMAEWGWRIPFLIGCLI  200 (434)
T ss_pred             HHHHHhCCHHHHhccchHHHHHHHHHH
Confidence            65421       237899999875443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.90  E-value=6.2e-22  Score=186.94  Aligned_cols=173  Identities=21%  Similarity=0.226  Sum_probs=151.9

Q ss_pred             HHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHH
Q 015968          109 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC  188 (397)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~  188 (397)
                      +.+..+..+.......+..|.+++++|.+..+.  +++.+.+.+++.++++++|+++||+|||+++.++.++.+++.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~   85 (382)
T PRK10091          8 LALGTFGLGMAEFGIMGVLTELAHDVGISIPAA--GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMF   85 (382)
T ss_pred             HHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH--hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence            344555555656666778899999999999888  999999999999999999999999999999999999999999999


Q ss_pred             HhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhH
Q 015968          189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA  268 (397)
Q Consensus       189 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~  268 (397)
                      +++++++.+++.|++.|++.+...+....++.|++++++|+++++++..+..+|..+++.+++.+.+. .+||+.|++.+
T Consensus        86 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~gwr~~f~~~~  164 (382)
T PRK10091         86 TLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE-FSWRYTFLLIA  164 (382)
T ss_pred             HHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh-ccHHHHHHHHH
Confidence            99999999999999999999988888888999999999999999999999999999999999888776 79999999988


Q ss_pred             HHHHHHHHH-hccCCCC
Q 015968          269 IPSILLALG-MGLSPES  284 (397)
Q Consensus       269 ~~~~~~~~~-~~~~~e~  284 (397)
                      ++.++..+. .+++||.
T Consensus       165 ~~~~~~~~~~~~~lp~~  181 (382)
T PRK10091        165 VFNIAVLASIYFWVPDI  181 (382)
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            876655443 3446765

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.90  E-value=2.2e-22  Score=189.18  Aligned_cols=159  Identities=21%  Similarity=0.150  Sum_probs=137.8

Q ss_pred             hchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHH
Q 015968          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGR  201 (397)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r  201 (397)
                      ..++..|.+.+++|++..+.  +++.+++.+++.+++++.|+++||+|||++++.+.++.+++.++++++++++.++++|
T Consensus        21 ~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (377)
T TIGR00890        21 TWTLLAPPLGRYFGVGVTAV--AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY   98 (377)
T ss_pred             hhhhHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999888  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhc-c
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG-L  280 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~-~  280 (397)
                      ++.|++.+..++....++.+++| ++|+++.++...+..+|.++++.+.+.+.+. .+||+.|++.+++.++..+..+ +
T Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~  176 (377)
T TIGR00890        99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL-EGVPAAFIYMGIIFLLVIVLGAFL  176 (377)
T ss_pred             HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999888888888899997 5699999999999999987655555555544 7899999998888766655443 3


Q ss_pred             CCCC
Q 015968          281 SPES  284 (397)
Q Consensus       281 ~~e~  284 (397)
                      ++++
T Consensus       177 ~~~~  180 (377)
T TIGR00890       177 IGYP  180 (377)
T ss_pred             eecC
Confidence            4443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.90  E-value=6.4e-22  Score=186.93  Aligned_cols=169  Identities=22%  Similarity=0.297  Sum_probs=149.9

Q ss_pred             HHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhch
Q 015968          114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS  193 (397)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~  193 (397)
                      +........+.+..|.+.+++|.+..+.  +++.+.+.++..++.++.|+++||+|||+++..+.++.+++.++++++++
T Consensus        15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   92 (385)
T TIGR00710        15 ILGPLGIDMYLPAFPEIAADLSTPASIV--QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN   92 (385)
T ss_pred             HHHHHHHHHhcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc
Confidence            3344556677778899999999999888  99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHH
Q 015968          194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL  273 (397)
Q Consensus       194 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~  273 (397)
                      ++.+++.|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.+++.+.+. .+||+.|++.+++.++
T Consensus        93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~  171 (385)
T TIGR00710        93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW-LSWHAIFAFLSLAGIL  171 (385)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999988776 7899999988877765


Q ss_pred             HHHH-hccCCCCh
Q 015968          274 LALG-MGLSPESP  285 (397)
Q Consensus       274 ~~~~-~~~~~e~~  285 (397)
                      ..+. .++.||++
T Consensus       172 ~~~~~~~~~~~~~  184 (385)
T TIGR00710       172 LSALIFFILPETL  184 (385)
T ss_pred             HHHHHHHhCCCCC
Confidence            5544 34456653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.90  E-value=1.1e-21  Score=186.86  Aligned_cols=184  Identities=21%  Similarity=0.192  Sum_probs=160.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhh
Q 015968           99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDA  178 (397)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~  178 (397)
                      .++.+.....+.+..+...+....+.+..+.+.+++|.+..+.  ++..+.+.+++.+++++.|+++||+|||+++..+.
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   85 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV--PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGV   85 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            3566777777788888877777888888899999999998888  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCc
Q 015968          179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL  258 (397)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  258 (397)
                      ++.+++.+++.++++++.+++.|++.|++.+...+....++.|++|+++|.+.+++......+|..++|.+++.+.+. .
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~  164 (406)
T PRK15402         86 AFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV-L  164 (406)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c
Confidence            999999999999999999999999999999888888889999999999999999998888888999999999888776 7


Q ss_pred             chHHHHHHhHHHHHHHHHHh-ccCCCCh
Q 015968          259 WWRTMFGLAAIPSILLALGM-GLSPESP  285 (397)
Q Consensus       259 ~w~~~~~~~~~~~~~~~~~~-~~~~e~~  285 (397)
                      +||+.|++.+++.++..+.. +..||++
T Consensus       165 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        165 PWRGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999998888776655533 3467664

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.90  E-value=2.8e-21  Score=188.99  Aligned_cols=184  Identities=20%  Similarity=0.333  Sum_probs=161.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHH
Q 015968          101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP  180 (397)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~  180 (397)
                      +.+..+..+++..++..++....++..|.+.+++|++..+.  +++.+.+.+++.++.++.|+++||+|||++++.+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA--ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            34456666777778888888888889999999999999888  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcch
Q 015968          181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW  260 (397)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  260 (397)
                      .+++.++++++++++.+++.|++.|++.+..++....++.|++|+++|++++++...+..+|..+++.+++.+.+. .+|
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~w  173 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV-WGW  173 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988876 899


Q ss_pred             HHHHHHhHHHHHHHHHHhccCCCChHH
Q 015968          261 RTMFGLAAIPSILLALGMGLSPESPRW  287 (397)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~e~~~~  287 (397)
                      |+.|++.++..++.++....+||++++
T Consensus       174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~  200 (496)
T PRK03893        174 RALFFIGILPIIFALWLRKNLPEAEDW  200 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence            999987555444444444456776554

>PRK09952 shikimate transporter; Provisional

Probab=99.90  E-value=2.7e-21  Score=185.71  Aligned_cols=181  Identities=16%  Similarity=0.153  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHHHHHhHhhchhhHH-HHHHHh--CCCchhhHHHHHH-----HHHHHHHHHHHHhhhhhhcccchHHHHH
Q 015968          104 PFVGVACLGAILFGYHLGVVNGALE-YLAKDL--GIAENTVLQGWIV-----SSLLAGATVGSFTGGSLADKFGRTRTFQ  175 (397)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~i~~~~~g~l~d~~Grr~~l~  175 (397)
                      ..+...+++.+..+++...++...+ .+.+++  +.+...   +++.     ++.+++..+++++.|+++||+|||++++
T Consensus        22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~   98 (438)
T PRK09952         22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM---GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence            3566667788888898888877766 455555  666542   4443     3445667789999999999999999999


Q ss_pred             HhhHHHHHHHHHHHhhchHH--------HHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHH
Q 015968          176 LDAVPLAAGAFLCATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL  247 (397)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  247 (397)
                      ++.++++++++++++++++.        .++++|+++|++.|+.++....++.|++|+++|++..+....+..+|.+++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~  178 (438)
T PRK09952         99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST  178 (438)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987        5889999999999999999999999999999999999999999999988887


Q ss_pred             HHhhhcCC-------CCcchHHHHHHhHHHHHHHHHHhccCCCChHH
Q 015968          248 VAGLPLAG-------NPLWWRTMFGLAAIPSILLALGMGLSPESPRW  287 (397)
Q Consensus       248 ~~~~~l~~-------~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~  287 (397)
                      .+...+..       ...|||+.|++.+++.++..++....||+|++
T Consensus       179 ~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~  225 (438)
T PRK09952        179 GLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEF  225 (438)
T ss_pred             HHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence            66554431       12699999998877765544444456777654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.90  E-value=7.9e-22  Score=189.58  Aligned_cols=274  Identities=14%  Similarity=0.073  Sum_probs=184.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHH
Q 015968          102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL  181 (397)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  181 (397)
                      .+..+..+.+.....+.....+....|.+++ +|++.++.  +++.+++.++..++.++.|+++||+|||++++.+.++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~  101 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL--GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS  101 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh--HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence            3444555555555555555555566787775 59999888  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh----chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCC
Q 015968          182 AAGAFLCATA----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP  257 (397)
Q Consensus       182 ~~~~~~~~~~----~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  257 (397)
                      +++.+++++.    ++++.+.+.|++.|++.+..++....++.|++|+++|++++++++.+..+|..+++.+.+......
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~  181 (438)
T TIGR00712       102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF  181 (438)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence            9988877654    467788899999999999988888899999999999999999999999999988877665443333


Q ss_pred             cchHHHHHHhHHHHHHHH-HHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCcc-chhhhh
Q 015968          258 LWWRTMFGLAAIPSILLA-LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEA-GWFDLF  335 (397)
Q Consensus       258 ~~w~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  335 (397)
                      .+||+.|++.+++.++.. +..+++||+|+....++. ++ .      +.+.+.+     ..++.+.+.+.+. ..+.++
T Consensus       182 ~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~-~------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  248 (438)
T TIGR00712       182 NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPI-EE-Y------RNDYPDD-----YNEKAEQELTAKEIFMQYVL  248 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCc-hh-c------ccccccc-----cccccccccchHHHHHHHHc
Confidence            689999999888876654 445557877653210000 00 0      0000000     0000000000000 112345


Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH-cCCChh--HHHHHHHHHHHHHhhhhc
Q 015968          336 SSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESD--VAASALVGAANVFGNYSI  395 (397)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~  395 (397)
                      +++..+...+...+.    ....+.+..|.|.++++ .|++..  .....+.++.+++|.+++
T Consensus       249 ~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~  307 (438)
T TIGR00712       249 PNKLLWYIAIANVFV----YLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLC  307 (438)
T ss_pred             cCchHHHHHHHHHHH----HHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHH
Confidence            665555443332222    22345677889999987 587764  444555666666666554

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.90  E-value=1.5e-21  Score=185.57  Aligned_cols=236  Identities=19%  Similarity=0.239  Sum_probs=182.5

Q ss_pred             HHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhc--hHHHHHHHHHHHHHhhh
Q 015968          132 KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIGIG  209 (397)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~  209 (397)
                      .+++.+..+.  +++.+.++.|+.+++++.|++.||+|.|+++..+.++.++++++..++.  +++.+++.|+++|++.|
T Consensus        66 ~~~~ws~~~k--~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g  143 (466)
T KOG2532|consen   66 GEYDWSSTEK--GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQG  143 (466)
T ss_pred             ceecCCHHHH--HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHh
Confidence            3577777777  9999999999999999999999999999999999999999999887763  55678999999999999


Q ss_pred             hhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhcc-CCCChHHH
Q 015968          210 ISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL-SPESPRWL  288 (397)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~e~~~~~  288 (397)
                      ..++....+.+.|.|++||++..++..++..+|.+++-.++|.+.+...||+++|++.++++++..+++++ ..|+|..+
T Consensus       144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h  223 (466)
T KOG2532|consen  144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH  223 (466)
T ss_pred             HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence            99999999999999999999999999999999999999999999887789999999999999887766544 56666531


Q ss_pred             HHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhc---CCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHhH
Q 015968          289 FQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAG---QGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYS  365 (397)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (397)
                       +.-..+|.                 +.+++..   +.+++.+.+|+++++++-.|.+    .+..+....+++.+..|+
T Consensus       224 -~~is~~El-----------------~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai----~~~~f~~~~~~~~l~~y~  281 (466)
T KOG2532|consen  224 -PNISEKEL-----------------KYIEKGKSEAHVKKKPPVPYKAILTSPPVWAI----WISAFGGNWGFYLLLTYL  281 (466)
T ss_pred             -CCCCHHHH-----------------HHHHhcccccccCCCCCCCHHHHHcCHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence             11111111                 1111111   1111246789999999554444    444455555688999999


Q ss_pred             HHHHHH-cCCChh--HHHHHHHHHHHHHh
Q 015968          366 TSVFRS-VGIESD--VAASALVGAANVFG  391 (397)
Q Consensus       366 ~~~~~~-~g~~~~--~~~~~~~~~~~~~g  391 (397)
                      |.|+++ +|++..  +....+..+..++.
T Consensus       282 PtY~~~VL~f~v~~~G~~salP~l~~~~~  310 (466)
T KOG2532|consen  282 PTYLKEVLGFDVRETGFLSALPFLAMAIV  310 (466)
T ss_pred             hHHHHHHhCCChhhhhHHHHHHHHHHHHH
Confidence            999997 577754  44444444444443

>PRK11043 putative transporter; Provisional

Probab=99.90  E-value=2.5e-21  Score=184.10  Aligned_cols=166  Identities=18%  Similarity=0.213  Sum_probs=145.7

Q ss_pred             HHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHH
Q 015968          116 FGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQ  195 (397)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~  195 (397)
                      ..+....+.+..|.+.+++|.+..+.  +++.+++.+++.++++++|+++||+|||++++.+.++.+++.+++.++++++
T Consensus        18 ~~~~~~~~~p~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~   95 (401)
T PRK11043         18 GFLATDMYLPAFKAIQADLQTSASAV--SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAA   95 (401)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            33445666777888999999999888  9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHH
Q 015968          196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA  275 (397)
Q Consensus       196 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  275 (397)
                      .+++.|++.|++.+...+...+++.|++++++++...+.......+|..++|.+++.+.+. .+||+.|++.+++.++..
T Consensus        96 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~g~~~~~~~~~~~~~~~~  174 (401)
T PRK11043         96 QLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH-FGWQAIFATLFAITLLLI  174 (401)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHH
Confidence            9999999999998888777788999999998888888988888899999999999988876 799999998888777666


Q ss_pred             HHhccCCCC
Q 015968          276 LGMGLSPES  284 (397)
Q Consensus       276 ~~~~~~~e~  284 (397)
                      +..++++|+
T Consensus       175 ~~~~~~~~~  183 (401)
T PRK11043        175 LPTLRLKPS  183 (401)
T ss_pred             HHHHHcCCC
Confidence            655555554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.90  E-value=7.5e-23  Score=192.48  Aligned_cols=262  Identities=15%  Similarity=0.127  Sum_probs=184.1

Q ss_pred             HHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhch
Q 015968          114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS  193 (397)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~  193 (397)
                      +...++...++...|.+.+++|++..+.  +++.+++.++..++.++.|+++||+|||++++++.++.+++.++++++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   82 (379)
T TIGR00881         5 AAYYLVRKNFALAMPYLVEEIGLSKTDL--GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS   82 (379)
T ss_pred             hHHHHhHHhhhhhhHHHHHHhCCCHhHH--HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh
Confidence            3444556666778899999999999888  99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHH-HHhhhcCCCCcchHHHHHHhHHHHH
Q 015968          194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL-VAGLPLAGNPLWWRTMFGLAAIPSI  272 (397)
Q Consensus       194 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~w~~~~~~~~~~~~  272 (397)
                      ++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ ++++.+... .+||+.|++.+++.+
T Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  161 (379)
T TIGR00881        83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-YSWHWVFIVPGIIAI  161 (379)
T ss_pred             HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999 566655554 789999998887775


Q ss_pred             HHH-HHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhHHHHHHHHHHH
Q 015968          273 LLA-LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFL  351 (397)
Q Consensus       273 ~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (397)
                      +.. +..++.+|+++....+...++        ..+ +.++   +.+++.++.+..+..++++++++..+.+.+...+..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (379)
T TIGR00881       162 IVSLICFLLLRDSPQSCGLPPAEEM--------PNE-EPDG---DAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVY  229 (379)
T ss_pred             HHHHHHheeeCCCccccccCccccC--------ccc-cccc---ccccccccccchHHHHHHHHhcchHHHHHHHHHHHH
Confidence            544 444556666542110000000        000 0000   000000011111223455566655444433333222


Q ss_pred             HHHhhhhHHHHHhHHHHHHH-cCCChh--HHHHHHHHHHHHHhhhh
Q 015968          352 FQQLAGINAVVYYSTSVFRS-VGIESD--VAASALVGAANVFGNYS  394 (397)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~  394 (397)
                          .....+..|.|.++++ .|++..  .......+++.++|.++
T Consensus       230 ----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  271 (379)
T TIGR00881       230 ----VVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLL  271 (379)
T ss_pred             ----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHH
Confidence                2245566778888765 587764  44445555555655554

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.89  E-value=7e-22  Score=194.19  Aligned_cols=204  Identities=27%  Similarity=0.309  Sum_probs=165.1

Q ss_pred             HHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhh
Q 015968          132 KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGIS  211 (397)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~  211 (397)
                      +.+..+....  .+..+++++|..+|++++|+++||+|||++++++.++..++.++.++++|++.+++.|++.|++.++.
T Consensus       111 ~~~c~~~~~~--~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~  188 (521)
T KOG0255|consen  111 NLVCDSSTLV--ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGP  188 (521)
T ss_pred             ceeeCcHhHH--HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccch
Confidence            4555555555  88999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhccCCCChHHHHHc
Q 015968          212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQ  291 (397)
Q Consensus       212 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  291 (397)
                      +.+...+++|++++++|+.++.+ ......++.+++..++++..   +|||.+++..++.++.++..++.||+|+|+..+
T Consensus       189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~  264 (521)
T KOG0255|consen  189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK  264 (521)
T ss_pred             hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence            99999999999999999999999 77777777777777777654   799999999999988877777778999999999


Q ss_pred             CCHHHHHHHHHHHhCC----cchHHHHHH---HHhhcCCCCCCccchhhhhccchhH
Q 015968          292 GKKSEAEKSIQTLYGK----ERVSEVMLD---LTNAGQGSAEPEAGWFDLFSSRYWK  341 (397)
Q Consensus       292 ~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  341 (397)
                      ++.+++.+.+++....    ...++..+.   .+.......+++..+.++++.+..+
T Consensus       265 g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  321 (521)
T KOG0255|consen  265 GRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLR  321 (521)
T ss_pred             CchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHH
Confidence            9999888888876432    111111111   1112222223446688888886433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.89  E-value=5.5e-22  Score=184.87  Aligned_cols=171  Identities=30%  Similarity=0.456  Sum_probs=147.6

Q ss_pred             HHHHHHHHhHhhchhhHH-HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHH
Q 015968          111 LGAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA  189 (397)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~  189 (397)
                      +..+...+......+..| .+.+++|.+..+.  +++.+++.++..++.++.|+++||+|||++++++.++.+++.++..
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQI--GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH--HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence            344445555666677788 8999999999988  9999999999999999999999999999999999999999976666


Q ss_pred             hhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHH
Q 015968          190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI  269 (397)
Q Consensus       190 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~  269 (397)
                      ++++.+.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|.+++|.+++.+.+. .+||+.|++.++
T Consensus        81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~~~~~~~~~~~~  159 (352)
T PF07690_consen   81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY-FGWRWAFLISAI  159 (352)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-CHHCCHHHHHHH
T ss_pred             hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc-cccccccccccc
Confidence            7688889999999999999999999999999999999999999999999999999999999999865 789999999998


Q ss_pred             HHHHHHHH-hccCCCC
Q 015968          270 PSILLALG-MGLSPES  284 (397)
Q Consensus       270 ~~~~~~~~-~~~~~e~  284 (397)
                      +.++..++ .++++++
T Consensus       160 ~~~~~~il~~~~~~~~  175 (352)
T PF07690_consen  160 LSLIAAILFILFLPEP  175 (352)
T ss_dssp             HHHHHHHHHHCCC---
T ss_pred             hhhhhhhhHhhhhhhc
Confidence            88777654 3444444

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.89  E-value=8.7e-22  Score=182.74  Aligned_cols=255  Identities=15%  Similarity=0.095  Sum_probs=181.5

Q ss_pred             HHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHH
Q 015968          107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENT-VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA  185 (397)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~  185 (397)
                      +++|+..|+.-+ ....+.+.|++.+++|++.++ .  |.+.+++..+|+++.++.|+++||+|.|+++.++.+.+++..
T Consensus        30 ~~lC~fGF~~e~-R~n~s~a~p~L~~elglT~~qv~--G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t  106 (511)
T TIGR00806        30 LYLCFYGFMAQF-RPGESFITPYLLTVLNFTEETVT--NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVW  106 (511)
T ss_pred             HHHHHHHHHHHh-hchHHHHHHHHHHHcCCCHHHhc--chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            334555555444 556677889999999999998 6  999999999999999999999999999999999999999999


Q ss_pred             HHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHH
Q 015968          186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG  265 (397)
Q Consensus       186 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~  265 (397)
                      ++.++++++..+.+.|++.|++.|+.+ ....++..|+|+++|+++.+++.++..+|.++++++++.+. . .|||+.+.
T Consensus       107 ~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s-~gWr~y~~  183 (511)
T TIGR00806       107 LLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-T-LGWISYST  183 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cCchhHHH
Confidence            999999999999999999999999999 88999999999999999999999999999999999998843 3 68987664


Q ss_pred             Hh---HHHHHHHHHHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcC-CCCCCccchhhhhc---cc
Q 015968          266 LA---AIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQ-GSAEPEAGWFDLFS---SR  338 (397)
Q Consensus       266 ~~---~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~  338 (397)
                      +.   ....++.+++.+++|..++.+.-+++.........+.....+.+.     .+..+ .+.+....++.+++   .-
T Consensus       184 Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~  258 (511)
T TIGR00806       184 LNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPG-----GKLEDYLGTCRDSFLVRMLSELVTI  258 (511)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCc-----cccchhhhhhhhHHHHHHHHHHHHH
Confidence            43   333355566677888655533222111000000000000000000     00000 00000011122222   23


Q ss_pred             hhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHc
Q 015968          339 YWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV  372 (397)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (397)
                      +..+.++-+.+++....+|++-+.+|...+.++.
T Consensus       259 y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v  292 (511)
T TIGR00806       259 YRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTL  292 (511)
T ss_pred             hcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHc
Confidence            4456666677777777888888889988887765

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.89  E-value=3.5e-22  Score=198.59  Aligned_cols=176  Identities=14%  Similarity=0.136  Sum_probs=150.5

Q ss_pred             HHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHH
Q 015968          107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF  186 (397)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~  186 (397)
                      +..++..+...+..+..+..++.++++|+++..+.  |++.+.+.++++++.++.+++.||+|||+++.++.++++++.+
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~--G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l  113 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS--GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF  113 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc--eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence            33444555555667777889999999999999988  9999999999999999999999999999999999999999999


Q ss_pred             HHHhhc---------------------------------------------------hHHHHHHHHHHHHHhhhhhhhhh
Q 015968          187 LCATAQ---------------------------------------------------SVQTMIIGRVLAGIGIGISSAIV  215 (397)
Q Consensus       187 ~~~~~~---------------------------------------------------~~~~~~~~r~l~G~~~~~~~~~~  215 (397)
                      ++++.+                                                   .+..++++|+++|+|.+..++..
T Consensus       114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~  193 (633)
T TIGR00805       114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG  193 (633)
T ss_pred             HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence            887652                                                   25567899999999999999999


Q ss_pred             hhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCC---------------------cchHHHHHHhHHHHHHH
Q 015968          216 PLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP---------------------LWWRTMFGLAAIPSILL  274 (397)
Q Consensus       216 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------------------~~w~~~~~~~~~~~~~~  274 (397)
                      .+++.|++|+++|+.++++++.+..+|.++|+++++.+.+..                     .+|+..|++.+++.++.
T Consensus       194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~  273 (633)
T TIGR00805       194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT  273 (633)
T ss_pred             chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998876431                     13777888888887776


Q ss_pred             HHHhccCCCC
Q 015968          275 ALGMGLSPES  284 (397)
Q Consensus       275 ~~~~~~~~e~  284 (397)
                      .+.++++|++
T Consensus       274 ~v~l~~~p~~  283 (633)
T TIGR00805       274 SIPFFFFPKA  283 (633)
T ss_pred             HHHHHhCccc
Confidence            6666666655

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.89  E-value=1.9e-21  Score=182.11  Aligned_cols=165  Identities=12%  Similarity=0.022  Sum_probs=144.0

Q ss_pred             HHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh
Q 015968          112 GAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA  191 (397)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~  191 (397)
                      ..++..+.........|.+..+++.+..+.  +++.+++.++..++.+++|+++||+|||++++.+.++.+++.++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   84 (365)
T TIGR00900         7 AQLISLIGTAITQVALPLYVLAGTGSASVL--SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV   84 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHH--HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555667788888999888887  999999999999999999999999999999999999998888888777


Q ss_pred             c-----hHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHH
Q 015968          192 Q-----SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL  266 (397)
Q Consensus       192 ~-----~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~  266 (397)
                      .     +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+.+. .+||+.|++
T Consensus        85 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~g~~~~~~~  163 (365)
T TIGR00900        85 ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT-LGIKWAIWV  163 (365)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHH
Confidence            7     9999999999999999999999999999999999999999999999999999999999988776 799999988


Q ss_pred             hHHHHHHHHHHhc
Q 015968          267 AAIPSILLALGMG  279 (397)
Q Consensus       267 ~~~~~~~~~~~~~  279 (397)
                      .++..++..+..+
T Consensus       164 ~~~~~~~~~~~~~  176 (365)
T TIGR00900       164 DAVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHHHHHHH
Confidence            8776655544443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.89  E-value=4.6e-21  Score=179.94  Aligned_cols=171  Identities=25%  Similarity=0.234  Sum_probs=135.4

Q ss_pred             HHHHHHHhHhhchhhHH-HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHh
Q 015968          112 GAILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT  190 (397)
Q Consensus       112 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~  190 (397)
                      +.+..........+..| .+++++|++..+.  +++.+++.++++++++++|+++||+|||++++++.++.+++.+++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~   86 (366)
T TIGR00886         9 GFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL--GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL   86 (366)
T ss_pred             HHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh--hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            33333444556677888 4999999999888  99999999999999999999999999999999999999999999999


Q ss_pred             hc-hHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCC---------CCcch
Q 015968          191 AQ-SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---------NPLWW  260 (397)
Q Consensus       191 ~~-~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------~~~~w  260 (397)
                      ++ +++.+++.|++.|++.+ .+.....+++|++|+++|++++++...+..+|..+++.+++.+..         ...+|
T Consensus        87 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w  165 (366)
T TIGR00886        87 AVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAW  165 (366)
T ss_pred             HhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            99 99999999999999865 456678899999999999999999987777777776666654432         12489


Q ss_pred             HHHHHH-hHHHHHHH-HHHhccCCCCh
Q 015968          261 RTMFGL-AAIPSILL-ALGMGLSPESP  285 (397)
Q Consensus       261 ~~~~~~-~~~~~~~~-~~~~~~~~e~~  285 (397)
                      |+.|++ .+++.++. ++..++.+|+|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (366)
T TIGR00886       166 GWAFVIVPAGILLLPALLIFFVGADTP  192 (366)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhcccCC
Confidence            999944 34444333 33344456654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.89  E-value=9.2e-21  Score=179.79  Aligned_cols=166  Identities=18%  Similarity=0.245  Sum_probs=145.3

Q ss_pred             HHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHH
Q 015968          117 GYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQT  196 (397)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  196 (397)
                      .+....+.+..|.+.+++|.+..+.  +++.+.+.+++.++++++|+++||+|||++++.+.++.+++.+++.++++++.
T Consensus        21 ~~~~~~~~p~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~   98 (394)
T PRK11652         21 QMAQTIYVPAIADMARDLNVREGAV--QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTV   98 (394)
T ss_pred             HHHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence            3445566678899999999999888  99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHH
Q 015968          197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (397)
Q Consensus       197 ~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~  276 (397)
                      +++.|++.|++.+...+....+..|.+++++|+.+.++...+..+|..++|.+++.+.+. .+||+.|++.+++.++..+
T Consensus        99 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~g~~~~f~~~~~~~~~~~~  177 (394)
T PRK11652         99 LIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL-FGWRACYLFLLLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHH
Confidence            999999999998888788888899999999999999999999999999999999988766 7899999988777655443


Q ss_pred             -HhccCCCCh
Q 015968          277 -GMGLSPESP  285 (397)
Q Consensus       277 -~~~~~~e~~  285 (397)
                       ..++.||++
T Consensus       178 ~~~~~~~~~~  187 (394)
T PRK11652        178 SMARWMPETR  187 (394)
T ss_pred             HHHHhCCccC
Confidence             345567754

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.88  E-value=1.3e-20  Score=178.73  Aligned_cols=165  Identities=23%  Similarity=0.292  Sum_probs=145.0

Q ss_pred             HhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHH
Q 015968          118 YHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTM  197 (397)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  197 (397)
                      .......+..|.+.+++|.+..+.  ++..+.+.++..+++++.|+++||+|||++++.+.++.+++.+++..+++++.+
T Consensus        17 ~~~~~~~~~lp~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~   94 (392)
T PRK10473         17 AGIDMYLVGLPRIAADLNASEAQL--HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLF   94 (392)
T ss_pred             HHHHHHhhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            334444568899999999998888  999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHH
Q 015968          198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (397)
Q Consensus       198 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~  277 (397)
                      ++.|++.|++.+...+....++.|++|+++|++++++.+....+|..++|++++.+.+. .+|++.|++.+++.++..++
T Consensus        95 ~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~-~g~~~~~~~~~~~~~i~~~~  173 (392)
T PRK10473         95 LAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK-FPWQSLFYTMAAMGILVLLL  173 (392)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cChHHHHHHHHHHHHHHHHH
Confidence            99999999999988888999999999999999999999999999999999999887665 79999999988777655443


Q ss_pred             -hccCCCCh
Q 015968          278 -MGLSPESP  285 (397)
Q Consensus       278 -~~~~~e~~  285 (397)
                       .+++||++
T Consensus       174 ~~~~~~~~~  182 (392)
T PRK10473        174 SLFILKETR  182 (392)
T ss_pred             HHHHcCCCC
Confidence             44566653

>PRK10133 L-fucose transporter; Provisional

Probab=99.88  E-value=2.2e-20  Score=179.01  Aligned_cols=147  Identities=18%  Similarity=0.222  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHH
Q 015968          105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG  184 (397)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~  184 (397)
                      .+..+.+..++.++.........|.+++++|++..+.  +++.+.+.+++.+++++.|+++||+|||++++++.++++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~--gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~  104 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            4444455566666777777889999999999999888  99999999999999999999999999999999999999999


Q ss_pred             HHHH---HhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhc
Q 015968          185 AFLC---ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL  253 (397)
Q Consensus       185 ~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  253 (397)
                      .+++   .++++++.++++|+++|++.|...+....++.|+.++++|...+++.+....+|..+++++++.+
T Consensus       105 ~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9775   46789999999999999999999999999999987777777789999999999999999887654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.88  E-value=1.9e-20  Score=176.91  Aligned_cols=220  Identities=10%  Similarity=0.006  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHHhHhhchhhHHHHHH-HhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHH
Q 015968          108 VACLGAILFGYHLGVVNGALEYLAK-DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF  186 (397)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~  186 (397)
                      +..++.++........+++.+.+.+ ++|++.++.  +++.+++.+++.++.++.|++.||+|.|+++.++.+++.+.++
T Consensus        38 ~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~--g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~  115 (462)
T PRK15034         38 ISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL--FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCV  115 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence            3344444444456666777787766 899999988  9999999999999999999999999999999999999999999


Q ss_pred             HHHhh-----chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcC-----C-
Q 015968          187 LCATA-----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA-----G-  255 (397)
Q Consensus       187 ~~~~~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----~-  255 (397)
                      +.+++     ++++.+++.|++.|++ +..++.....++++||+++||+++|+.....++|..+++++...+.     . 
T Consensus       116 ~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~  194 (462)
T PRK15034        116 WLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAF  194 (462)
T ss_pred             HHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99887     8999999999999998 7788889999999999999999999997666666665544443221     1 


Q ss_pred             -----------CCcchHHHHHHhHHHHHHHHHHhcc-CCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCC
Q 015968          256 -----------NPLWWRTMFGLAAIPSILLALGMGL-SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQG  323 (397)
Q Consensus       256 -----------~~~~w~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (397)
                                 ...+||.++++..++.++..++.++ +++.+.   .+                                
T Consensus       195 ~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~--------------------------------  239 (462)
T PRK15034        195 LGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SR--------------------------------  239 (462)
T ss_pred             hccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cc--------------------------------
Confidence                       1245888888877777666555444 333321   00                                


Q ss_pred             CCCCccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Q 015968          324 SAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS  371 (397)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (397)
                        .....+.+.+|++..|.+.+.    .+..+.++..+.+|+|+++++
T Consensus       240 --~~~~~~~~vlk~~~~Wllsll----y~~tFG~fvg~s~~lp~~~~~  281 (462)
T PRK15034        240 --ASIADQLPVLQRLHLWLLSLL----YLATFGSFIGFSAGFAMLAKT  281 (462)
T ss_pred             --cCHHHHHHHhCCCchhHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence              001123456666655543333    344455567788889988876

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.88  E-value=6.2e-21  Score=183.96  Aligned_cols=175  Identities=14%  Similarity=0.096  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHH
Q 015968          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (397)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~  182 (397)
                      |.++..+.+...........++...+.+.+++|.+.++.  +++.+.+.++..++.++.|+++||+|||++++.+.++.+
T Consensus        18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~   95 (455)
T TIGR00892        18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET--AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLAS   95 (455)
T ss_pred             hHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH--HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHH
Confidence            334444444433333333445667899999999999888  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchHHHHHH-HHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchH
Q 015968          183 AGAFLCATAQSVQTMII-GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR  261 (397)
Q Consensus       183 ~~~~~~~~~~~~~~~~~-~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  261 (397)
                      +++++++++++++.+++ .|++.|++.+...+....++.++++ ++|++++++.+.+..+|..++|.+++.+.+. .|||
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~-~gwr  173 (455)
T TIGR00892        96 LGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES-FGWR  173 (455)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH-hChH
Confidence            99999999999988865 4689999988776777788899996 6799999999999999999999998888776 7999


Q ss_pred             HHHHHhHHHHHHHHHHhccC
Q 015968          262 TMFGLAAIPSILLALGMGLS  281 (397)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~  281 (397)
                      +.|++.+++.++..+..+++
T Consensus       174 ~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       174 GSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999988776555444333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.87  E-value=5.7e-20  Score=173.53  Aligned_cols=148  Identities=19%  Similarity=0.244  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHH
Q 015968          107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF  186 (397)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~  186 (397)
                      ..+.++.++.....+...+..|.+.+++|.+..+.  |++.+.+.+++.+++++.|+++||+|||+++..+.++.+++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~   86 (381)
T PRK03633          9 LLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV--GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCA   86 (381)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566666777788889999999999998888  9999999999999999999999999999999999999999999


Q ss_pred             HHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC
Q 015968          187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN  256 (397)
Q Consensus       187 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  256 (397)
                      +++++++++.++++|++.|++.+...+.....+.+..++++|+++++++..+..+|..+|+.+++.+.+.
T Consensus        87 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633         87 GLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999988888878888889999999999999999999999999999988654

>PRK10504 putative transporter; Provisional

Probab=99.87  E-value=3.9e-20  Score=179.66  Aligned_cols=174  Identities=24%  Similarity=0.302  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHH
Q 015968          108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL  187 (397)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~  187 (397)
                      +++++.++..++...+++..|.+.+++|.+..+.  +++.+.+.++..++.+++|+++||+|||++++.+.++.+++.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~   91 (471)
T PRK10504         14 IVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM--HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLF   91 (471)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence            3445556666667777788999999999998888  89999999999999999999999999999999999999999999


Q ss_pred             HHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHh
Q 015968          188 CATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA  267 (397)
Q Consensus       188 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~  267 (397)
                      ++++++++.++++|+++|++.+...+....++.|++|+++|+.+.++......+|..++|.+++.+.+. .+||+.|++.
T Consensus        92 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~-~gw~~~f~~~  170 (471)
T PRK10504         92 CALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY-ASWHWIFLIN  170 (471)
T ss_pred             HHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh-ccHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998876 7999999988


Q ss_pred             HHHHHHHHHHhc-cCCCC
Q 015968          268 AIPSILLALGMG-LSPES  284 (397)
Q Consensus       268 ~~~~~~~~~~~~-~~~e~  284 (397)
                      ..+.++..+... ..|+.
T Consensus       171 ~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        171 IPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHHHHHHHHhCCCc
Confidence            776655544433 34443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.87  E-value=1.2e-20  Score=177.85  Aligned_cols=163  Identities=26%  Similarity=0.378  Sum_probs=145.7

Q ss_pred             HhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHH
Q 015968          120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMII  199 (397)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  199 (397)
                      ...+.+..|.+.+++|++..+.  +++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.++++++.+++
T Consensus         7 ~~~~~p~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   84 (377)
T PRK11102          7 IDMYLPALPVIAADFGVSAGSV--QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIY   84 (377)
T ss_pred             HHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            3455678899999999999888  99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHH-Hh
Q 015968          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL-GM  278 (397)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~-~~  278 (397)
                      .|++.|++.+...+....++.|++|+++|++++++.+.+..+|..++|.+++.+.+. .+||+.|++.+++.++..+ ..
T Consensus        85 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         85 MRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW-FSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999899999999999999999999999999999999999999888775 7899999988877766544 34


Q ss_pred             ccCCCCh
Q 015968          279 GLSPESP  285 (397)
Q Consensus       279 ~~~~e~~  285 (397)
                      +++||++
T Consensus       164 ~~~~~~~  170 (377)
T PRK11102        164 FFIPETL  170 (377)
T ss_pred             HhCCccC
Confidence            5566653

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.87  E-value=6.9e-20  Score=174.08  Aligned_cols=171  Identities=15%  Similarity=0.183  Sum_probs=147.6

Q ss_pred             HHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHH
Q 015968          106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA  185 (397)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~  185 (397)
                      +.+++...+..++..+...+..|.+++++|++..+.  +++.+.+.+++.+++++.|++.||+|||++++++.++++++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~--g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA--ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            344556666777777787889999999999999888  999999999999999999999999999999999999999998


Q ss_pred             HHHHh---hchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC------
Q 015968          186 FLCAT---AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN------  256 (397)
Q Consensus       186 ~~~~~---~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------  256 (397)
                      +++..   .++++.+++.|++.|++.|...+....++.+..|+++|++.+++.+....+|..+++.++..+...      
T Consensus        83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~  162 (410)
T TIGR00885        83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS  162 (410)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence            87644   468999999999999999999999999999999999999999999999999999999998776422      


Q ss_pred             -------------------CcchHHHHHHhHHHHHHHHHHh
Q 015968          257 -------------------PLWWRTMFGLAAIPSILLALGM  278 (397)
Q Consensus       257 -------------------~~~w~~~~~~~~~~~~~~~~~~  278 (397)
                                         ..+||+.|++.+++.++..++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               1359999988888776554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.86  E-value=6e-20  Score=174.53  Aligned_cols=164  Identities=18%  Similarity=0.143  Sum_probs=136.3

Q ss_pred             HHHHHHHHHhHhhchhhHHH-HHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHH
Q 015968          110 CLGAILFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC  188 (397)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~  188 (397)
                      .+..++..+......+.+|. +.+++|.+..+.  +++.+++.+++.+++++.|+++||+|||++++.+.++.+++.+.+
T Consensus        21 ~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~   98 (399)
T PRK05122         21 VMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA--GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLY   98 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH--HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHH
Confidence            33444444445566666664 678999998888  999999999999999999999999999999999999888776655


Q ss_pred             Hhh--------chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcch
Q 015968          189 ATA--------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW  260 (397)
Q Consensus       189 ~~~--------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  260 (397)
                      .++        .+++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|.++|+.+++.+.+. .+|
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~g~  177 (399)
T PRK05122         99 LLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW-GGL  177 (399)
T ss_pred             HHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc-ccH
Confidence            443        25678999999999999999998889999999999999999999999999999999999888776 789


Q ss_pred             HHHHHHhHHHHHHHHH
Q 015968          261 RTMFGLAAIPSILLAL  276 (397)
Q Consensus       261 ~~~~~~~~~~~~~~~~  276 (397)
                      ++.+++.+++.++..+
T Consensus       178 ~~~~~~~~~~~~~~~~  193 (399)
T PRK05122        178 AGLGLLIMLLALLGLL  193 (399)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9988776665544433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.86  E-value=5.2e-20  Score=174.32  Aligned_cols=155  Identities=20%  Similarity=0.091  Sum_probs=132.3

Q ss_pred             hhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHH
Q 015968          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL  203 (397)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  203 (397)
                      ....+.+.++++.+..+.  +++.+.+.+++.++.+++|+++||+|||++++++.++.+++.+++++..+.   ++.|++
T Consensus        23 ~~~~~~~~~~~~~s~~~~--~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l   97 (393)
T PRK11195         23 LFAAIALLKELHYPDWSQ--PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGL   97 (393)
T ss_pred             HHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            344556678899887777  999999999999999999999999999999999999999988887776654   778999


Q ss_pred             HHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhccCCC
Q 015968          204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPE  283 (397)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e  283 (397)
                      +|++.+...+...+++.|++|+++|++++++......+|.++||.+++.+.+.  .|+..+++.+...++..+..+.+||
T Consensus        98 ~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~~~~~~~~~~~~~~l~~  175 (393)
T PRK11195         98 VGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVCALIYLLAALFNLFIPR  175 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999998764  3777776666555545555566777


Q ss_pred             Ch
Q 015968          284 SP  285 (397)
Q Consensus       284 ~~  285 (397)
                      ++
T Consensus       176 ~~  177 (393)
T PRK11195        176 LG  177 (393)
T ss_pred             Cc
Confidence            65

>PRK12382 putative transporter; Provisional

Probab=99.86  E-value=1.5e-19  Score=171.46  Aligned_cols=151  Identities=16%  Similarity=0.218  Sum_probs=127.3

Q ss_pred             hHhhchhhHH-HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHH---h----
Q 015968          119 HLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---T----  190 (397)
Q Consensus       119 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~---~----  190 (397)
                      ..+...+.+| ++.+++|.+..+.  +++.+++.+++.++++++|+++||+|||++++.+.++..++.+...   +    
T Consensus        30 ~~~~~~p~l~~~l~~~lg~s~~~~--g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~  107 (392)
T PRK12382         30 TVGLPLPVIPLFVHHDLGFGNTMV--GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVS  107 (392)
T ss_pred             HHHHHhhhhhHHHHHhcCCcHHHH--HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            3445455666 4688999999888  9999999999999999999999999999999999887776654322   1    


Q ss_pred             -hchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHH
Q 015968          191 -AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI  269 (397)
Q Consensus       191 -~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~  269 (397)
                       .++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+.+. .||++.+++..+
T Consensus       108 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~~~~~~~  186 (392)
T PRK12382        108 APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH-FGFAALALTTMV  186 (392)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHH
Confidence             357889999999999999988888888999999999999999999999999999999999888766 789988766554


Q ss_pred             HHH
Q 015968          270 PSI  272 (397)
Q Consensus       270 ~~~  272 (397)
                      ..+
T Consensus       187 ~~~  189 (392)
T PRK12382        187 LPL  189 (392)
T ss_pred             HHH
Confidence            443

>TIGR00896 CynX cyanate transporter

Probab=99.86  E-value=6.1e-20  Score=171.66  Aligned_cols=233  Identities=21%  Similarity=0.265  Sum_probs=169.9

Q ss_pred             hhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHH
Q 015968          121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIG  200 (397)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (397)
                      ....+..|.+.+++|++..+.  +++.+++.+++.++.++.|+++||+|||+++.++.++.+++.+.+ ..++++.+++.
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~   93 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVA--GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAG   93 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence            456778999999999999888  999999999999999999999999999999999998888888777 77899999999


Q ss_pred             HHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCc-chHHHHHHhHHHHHHHHHHhc
Q 015968          201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL-WWRTMFGLAAIPSILLALGMG  279 (397)
Q Consensus       201 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~w~~~~~~~~~~~~~~~~~~~  279 (397)
                      |++.|++.+...+....++.|+++ ++|++++++++.+..+|..+++.+++.+.+... +||+.|.+.+++.++..+  .
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~  170 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--A  170 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--H
Confidence            999999999888888888999986 579999999999999999999988887765422 499998776655443322  2


Q ss_pred             cCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhhH
Q 015968          280 LSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGIN  359 (397)
Q Consensus       280 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (397)
                      ++|+.++      +.+                          ++++..+...++++|++..+...+...+    ....++
T Consensus       171 ~~~~~~~------~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  214 (355)
T TIGR00896       171 WIPQVRR------RVA--------------------------ANQTTTRLTPVRIWRSPLAWQVTVFFGL----QSGLYY  214 (355)
T ss_pred             Hhhhhcc------ccC--------------------------CCCCCCCCCCchhhcCHhHHHHHHHHHH----HHHHHH
Confidence            2332211      000                          0000011234456666544443332222    222345


Q ss_pred             HHHHhHHHHHHHcCCChh--HHHHHHHHHHHHHhhhhc
Q 015968          360 AVVYYSTSVFRSVGIESD--VAASALVGAANVFGNYSI  395 (397)
Q Consensus       360 ~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~  395 (397)
                      .+..|+|.++++.|++..  .....+.+++.+++.++.
T Consensus       215 ~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~  252 (355)
T TIGR00896       215 SLIGWLPAILISHGASAATAGSLLALMQLAQAASALLI  252 (355)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhH
Confidence            667789999988888765  445556666666666543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.86  E-value=9.6e-20  Score=160.77  Aligned_cols=260  Identities=19%  Similarity=0.263  Sum_probs=198.5

Q ss_pred             HHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHH
Q 015968          105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG  184 (397)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~  184 (397)
                      ..+....+.....+-....+.+.|.+.+.+|.+..+.  .++....+.|..+++..||.++|++|||+.+....+..++.
T Consensus        79 l~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~--~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~  156 (528)
T KOG0253|consen   79 LFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQA--PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVF  156 (528)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhh--hHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHH
Confidence            4444455555554444444557788888899877777  89999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHH
Q 015968          185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF  264 (397)
Q Consensus       185 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~  264 (397)
                      ..+.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.. +.+.+|.++...+...+... .||||..
T Consensus       157 ~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~-~gwr~~l  233 (528)
T KOG0253|consen  157 GVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN-FGWRYLL  233 (528)
T ss_pred             HHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh-hhHHHHH
Confidence            99999999999999999999999999 888888889999999998776666 88999999999998887776 7999999


Q ss_pred             HHhHHHHHHHHHHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcc---------------hHHHHHHHHh-hcCCCCCCc
Q 015968          265 GLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKER---------------VSEVMLDLTN-AGQGSAEPE  328 (397)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~  328 (397)
                      .....+..+.+.+.+++||+||+...++++.++.+.++++...+.               .+++..++++ +.+..++..
T Consensus       234 ~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~r  313 (528)
T KOG0253|consen  234 FTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVR  313 (528)
T ss_pred             HHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccc
Confidence            888888888888888999999999999999998888887654321               1111111111 112233445


Q ss_pred             cchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHH
Q 015968          329 AGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFR  370 (397)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (397)
                      ....+++..+.++..++.+..++.+.+. ++........+++
T Consensus       314 g~~~nLlsp~lrkttlllw~iwfgnafs-yyg~VLlttelfq  354 (528)
T KOG0253|consen  314 GGTTNLLSPKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQ  354 (528)
T ss_pred             cchHhhcChHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHh
Confidence            5677888877777777666655544332 4444444444444

>TIGR00897 2A0118 polyol permease family

Probab=99.85  E-value=1.7e-19  Score=171.45  Aligned_cols=234  Identities=10%  Similarity=0.017  Sum_probs=159.7

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHH---h-hchHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---T-AQSVQTMIIGR  201 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~~r  201 (397)
                      ..+.+.+++|.+..+.  +++.+.+.+++.++.++.|+++||+|||+++..+.++.+++.+++.   . .++++.+++.|
T Consensus        35 ~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  112 (402)
T TIGR00897        35 WLSPFLKALGLSPQQS--ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFY  112 (402)
T ss_pred             hHHHHHHHhCCCHHHh--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHH
Confidence            4455568899999888  9999999999999999999999999999999999999988876543   3 35788899999


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHH-HHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHH-hc
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI-LAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG-MG  279 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~-~~  279 (397)
                      ++.|++.+...+....++.+++|+++|++++++..++..+|. ++++.+++.+.+. .||+..+|......++..++ .+
T Consensus       113 ~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~  191 (402)
T TIGR00897       113 GIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA-FGEMNTLWSALAFVLTGGVIALF  191 (402)
T ss_pred             HHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHHHHHHHHHHh
Confidence            999999888777777888999999999999999999999996 6889998887765 67665555443333322222 23


Q ss_pred             cCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhhH
Q 015968          280 LSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGIN  359 (397)
Q Consensus       280 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (397)
                      +.++.++.. ++++             +++    .          ++.+..++++++++..+...+...    ....+.+
T Consensus       192 ~~~~~~~~~-~~~~-------------~~~----~----------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  239 (402)
T TIGR00897       192 SNKDIFTPQ-HMQT-------------REK----F----------SELGKAATILFTNPNVLLGGMVRI----INTIGLF  239 (402)
T ss_pred             ccCCCCCcc-cccC-------------Ccc----h----------hhHHHHHHHHHcChhHHHHHHHHH----HHHHHHH
Confidence            334321100 0000             000    0          000112345666655444333222    2233456


Q ss_pred             HHHHhHHHHHHHcCCChh--HHHHHHHHHHHHHhhhh
Q 015968          360 AVVYYSTSVFRSVGIESD--VAASALVGAANVFGNYS  394 (397)
Q Consensus       360 ~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~  394 (397)
                      .+.+|.|.++++.|++..  ........++.++|.++
T Consensus       240 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~  276 (402)
T TIGR00897       240 GFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVI  276 (402)
T ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Confidence            677889999988888865  23334445555555554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.84  E-value=1.3e-19  Score=173.33  Aligned_cols=163  Identities=19%  Similarity=0.165  Sum_probs=138.7

Q ss_pred             HhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHh-----hchH
Q 015968          120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT-----AQSV  194 (397)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~-----~~~~  194 (397)
                      ........|.+.++++.+..+.  |++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.+..+.     .+++
T Consensus        33 ~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  110 (417)
T PRK10489         33 LGLLGVAVPVQIQMMTGSTLQV--GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSL  110 (417)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcH
Confidence            4455567888888888887777  99999999999999999999999999999999888877776655432     4678


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHH
Q 015968          195 QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL  274 (397)
Q Consensus       195 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~  274 (397)
                      +.+++.|++.|++.+...+....++.|++|+++|+++.++...+..+|..+||.+++.+.+. .+|+|.|++.++..++.
T Consensus       111 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~-~~~~~~~~~~~~~~~~~  189 (417)
T PRK10489        111 LAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA-GGVAWNYGLAAAGTFIT  189 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH-HhhHHHHHHHHHHHHHH
Confidence            89999999999998888888889999999999999999999999999999999999988765 68999998887777666


Q ss_pred             HHHhccCCCCh
Q 015968          275 ALGMGLSPESP  285 (397)
Q Consensus       275 ~~~~~~~~e~~  285 (397)
                      .++.+.+|+++
T Consensus       190 ~~~~~~l~~~~  200 (417)
T PRK10489        190 LLPLLRLPALP  200 (417)
T ss_pred             HHHHHhCCCCC
Confidence            66666677654

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.84  E-value=1.2e-18  Score=165.38  Aligned_cols=154  Identities=20%  Similarity=0.155  Sum_probs=137.0

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  205 (397)
                      ..+++++++|.+..+.  |++.+...++..+..++.|+++||+|||++++.+.++.+++.+++.+.++++.+++.|++.|
T Consensus        33 ~~~~~~~~~g~s~~~~--gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g  110 (400)
T PRK11646         33 ISIRFVDQLGWAAVMV--GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSG  110 (400)
T ss_pred             HHHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            4456788999998888  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHH-hccCCC
Q 015968          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG-MGLSPE  283 (397)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e  283 (397)
                      ++.+...+...+++.|++|+++|++++++......+|..+||.+++.+. . .+|++.|++.++..++..++ .++.||
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~-~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        111 LGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-Q-YDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9998888888899999999999999999999999999999999999987 4 79999999887776554433 334454

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.83  E-value=1.5e-18  Score=163.41  Aligned_cols=171  Identities=18%  Similarity=0.112  Sum_probs=136.2

Q ss_pred             HHHHHHhHhhchhhHH-HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHH-HhhHHHHHHHHHHHh
Q 015968          113 AILFGYHLGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-LDAVPLAAGAFLCAT  190 (397)
Q Consensus       113 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~-~~~~~~~~~~~~~~~  190 (397)
                      .+..++..+...+..| ++++++|.+..+.  +++.+++.++..+.+++.|+++||+|||+.++ .+.++.+++.+++++
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   83 (375)
T TIGR00899         6 AFLTGIAGALQFPTLSLFLSEEVRARPAMI--GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW   83 (375)
T ss_pred             HHHHHHHHHHHhhHHHHHHHcccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence            3344444555556555 5678899998888  99999999999999999999999999988765 456666677788889


Q ss_pred             hchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhh--hhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhH
Q 015968          191 AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGAL--GSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA  268 (397)
Q Consensus       191 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~  268 (397)
                      +++++.+++.|++.|.+.+...+...++..|+.+++.|+..  .+....+..+|.++++.+++.+.+. .+||+.|++.+
T Consensus        84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~f~~~~  162 (375)
T TIGR00899        84 NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG-FGFTVMFLTAA  162 (375)
T ss_pred             cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh-cccHHHHHHHH
Confidence            99999999999999888777888888888898887766644  5777788889999999999988776 79999999988


Q ss_pred             HHHHHHHHH-hccCCCChH
Q 015968          269 IPSILLALG-MGLSPESPR  286 (397)
Q Consensus       269 ~~~~~~~~~-~~~~~e~~~  286 (397)
                      ++.++..+. .+++||.|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       163 LAFVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             HHHHHHHHHHHHhCCCccc
Confidence            877665544 344777653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.83  E-value=9.1e-19  Score=162.79  Aligned_cols=167  Identities=35%  Similarity=0.493  Sum_probs=150.0

Q ss_pred             HHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHH
Q 015968          110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA  189 (397)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~  189 (397)
                      ++..+...+......+..+.+.+++|.+..+.  +++.+...++..++.++.|+++||+|||+.++.+.++..++.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            34455555666677778898999999998888  9999999999999999999999999999999999999999999999


Q ss_pred             hhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHH
Q 015968          190 TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI  269 (397)
Q Consensus       190 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~  269 (397)
                      +.++++.+++.|++.|++.+...+....++.|++|+++|++.+++...+..+|..+++.+++.+.+. .+|++.+++.++
T Consensus        83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~  161 (352)
T cd06174          83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES-LGWRWLFLILAI  161 (352)
T ss_pred             HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998876 679999998888


Q ss_pred             HHHHHHHHhc
Q 015968          270 PSILLALGMG  279 (397)
Q Consensus       270 ~~~~~~~~~~  279 (397)
                      +.++..+..+
T Consensus       162 ~~~~~~~~~~  171 (352)
T cd06174         162 LGLLLALLLL  171 (352)
T ss_pred             HHHHHHHHHH
Confidence            7776665544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.83  E-value=2.2e-18  Score=162.96  Aligned_cols=170  Identities=21%  Similarity=0.284  Sum_probs=131.1

Q ss_pred             HHHHhHhhchhhHHHHHHHhCC--CchhhHHHHHHH--HHH---HHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHH
Q 015968          115 LFGYHLGVVNGALEYLAKDLGI--AENTVLQGWIVS--SLL---AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL  187 (397)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~---~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~  187 (397)
                      ...++...+++..+.+.+++..  ++.+.  +.+.+  .+.   ++..+++++.|+++||+|||++++.+.++.+++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~   81 (394)
T TIGR00883         4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLV--ALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCChHH--HHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3445566666677777777543  33333  33333  233   333568899999999999999999999999999999


Q ss_pred             HHhhchHH--------HHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCC----
Q 015968          188 CATAQSVQ--------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG----  255 (397)
Q Consensus       188 ~~~~~~~~--------~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----  255 (397)
                      +++++++.        .+++.|+++|++.+...+....++.|++++++|++..++...+..+|.+++++++..+..    
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~  161 (394)
T TIGR00883        82 IGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD  161 (394)
T ss_pred             HhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            99998865        488899999999999999999999999999999999999999999999999887765431    


Q ss_pred             ---CCcchHHHHHHhHHHHHHHHHHhccCCCChH
Q 015968          256 ---NPLWWRTMFGLAAIPSILLALGMGLSPESPR  286 (397)
Q Consensus       256 ---~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~  286 (397)
                         ...+||+.|++.+++.++..+.....||+++
T Consensus       162 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (394)
T TIGR00883       162 DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPV  195 (394)
T ss_pred             HHhhccchHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence               1268999998877766655555455666654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.82  E-value=2.7e-19  Score=162.57  Aligned_cols=272  Identities=20%  Similarity=0.226  Sum_probs=192.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHh-C-------CCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccch
Q 015968           99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDL-G-------IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR  170 (397)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr  170 (397)
                      .++.+..+.++..+.+.+.|+..+++...+.+...+ |       ++....  +.+..+.++|.++|++++|++.|++||
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~--~~Vn~~A~vGti~GQl~FG~lgD~~GR  113 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVL--ALVNAAALVGTIFGQLFFGWLGDKFGR  113 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHH--HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            455667888889999999999999998888776654 2       223333  788999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHhhc-------hHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHH
Q 015968          171 TRTFQLDAVPLAAGAFLCATAQ-------SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI  243 (397)
Q Consensus       171 r~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  243 (397)
                      |+++...++++++++++++++.       -.+++...|++.|+|.|+-+|...+..+|....+.||..++...+...+|.
T Consensus       114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi  193 (538)
T KOG0252|consen  114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI  193 (538)
T ss_pred             hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence            9999999999999999877652       257789999999999999999999999999999999988888777777776


Q ss_pred             HHHHHHhhhcC----CCC----------cchHHHHHHhHHHHHHHHHHhccCCCChHHHHHcCC-HHHHHHHHHHHhCCc
Q 015968          244 LAALVAGLPLA----GNP----------LWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGK-KSEAEKSIQTLYGKE  308 (397)
Q Consensus       244 ~~~~~~~~~l~----~~~----------~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~  308 (397)
                      +.|.+++..+.    ...          .-||..|.+.++++++.+..-+.+||++++.....+ .+.+.+..++.... 
T Consensus       194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~-  272 (538)
T KOG0252|consen  194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSV-  272 (538)
T ss_pred             hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhcccccccc-
Confidence            66655554432    110          239999988888888888888889999998643332 22222111111110 


Q ss_pred             chHHHHHHHHhhcCCCCCCccchhhhhccchhH--HHHHHHHHHHHHHhhhhHHHHHhHHHHHHHcCCChh
Q 015968          309 RVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWK--VVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD  377 (397)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  377 (397)
                          ..++.+........++.+.....+....|  ..++..+..++.....++....+...+++.+|+.+.
T Consensus       273 ----~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~  339 (538)
T KOG0252|consen  273 ----DIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPS  339 (538)
T ss_pred             ----ccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCC
Confidence                11111111111111122222222222222  456667777777777788888889999998887765

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.82  E-value=4.7e-18  Score=161.91  Aligned_cols=173  Identities=24%  Similarity=0.192  Sum_probs=143.7

Q ss_pred             HHHHHHHHHhHhhchhhHHHHHHHhCCCchhh---HHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHH
Q 015968          110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTV---LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF  186 (397)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~  186 (397)
                      +++.++..+......+.+|.+.+++|++..+.   ..+++.+++.++..++.+++|+++||+|||++++.+.++.+++.+
T Consensus        20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   99 (408)
T PRK09874         20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMV   99 (408)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHH
Confidence            33444445556666778898889999886542   237889999999999999999999999999999999999999999


Q ss_pred             HHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHH
Q 015968          187 LCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL  266 (397)
Q Consensus       187 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~  266 (397)
                      ++.+.++++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|.+++|.+++.+.+. .+||+.|++
T Consensus       100 ~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~  177 (408)
T PRK09874        100 LMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS-YGLRPVFFI  177 (408)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHH
Confidence            88899999999999999999754 5677778889999999999999999999999999999999988776 789999998


Q ss_pred             hHHHHHHHHHH-hccCCCC
Q 015968          267 AAIPSILLALG-MGLSPES  284 (397)
Q Consensus       267 ~~~~~~~~~~~-~~~~~e~  284 (397)
                      .+++.++..+. .++.+|.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        178 TASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHHHHHhccC
Confidence            88777655544 3445554

>PRK10054 putative transporter; Provisional

Probab=99.81  E-value=2.5e-18  Score=162.97  Aligned_cols=155  Identities=20%  Similarity=0.201  Sum_probs=135.5

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  205 (397)
                      ..+++.+++|++..+.  |++.+.+.+++.+++++.|+++||+|||++++++.++.+++.++.++.++++.++++|++.|
T Consensus        30 l~~~l~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  107 (395)
T PRK10054         30 MTIYLSRQYSLSVDLI--GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALIN  107 (395)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4567788899999888  99999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHh-ccCCCC
Q 015968          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM-GLSPES  284 (397)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~  284 (397)
                      .+.+...+....+..|.+|+++|++++++.+....+|.+++|.+++.+..  .+|++.|++.+++.++.++.. +++|++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~--~g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        108 CAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM--QSINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            88777788888999999999999999999999999999999999998764  589999998877776654433 334444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.81  E-value=2.6e-18  Score=155.54  Aligned_cols=217  Identities=18%  Similarity=0.188  Sum_probs=169.1

Q ss_pred             hHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhc---hHH
Q 015968          119 HLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ---SVQ  195 (397)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~---~~~  195 (397)
                      .....+++.+.+.+++|+|.+|.  +++.++..+...+..++.|.+.||+|.|++..++.++..+-++..+++.   +++
T Consensus        29 VW~l~s~l~~~i~~~~~LS~~q~--~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~  106 (417)
T COG2223          29 VWTLFSPLGVFIKSDFGLSEGQK--GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTW  106 (417)
T ss_pred             HHHHHHHHHhhhccccCCCHHHH--HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence            35566778888999999999999  9999999999999999999999999999999999999999999988874   556


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcc---hHHHHHHhHHHHH
Q 015968          196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW---WRTMFGLAAIPSI  272 (397)
Q Consensus       196 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~---w~~~~~~~~~~~~  272 (397)
                      .+++++++.|++ |+.+++...+++.+||++++|.++|++. ..++|..+..+++..+... .+   |+....+..+..+
T Consensus       107 ~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~-~g~~~w~~~~~i~~~~l~  183 (417)
T COG2223         107 QLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA-FGFLAWRNVAGIYVVALA  183 (417)
T ss_pred             HHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence            999999999998 4667888899999999999999999999 8888888877777777665 45   9999888887776


Q ss_pred             HHHHH-hccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCc-cchhhhhccchhHHHHHHHHHH
Q 015968          273 LLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPE-AGWFDLFSSRYWKVVSVGAALF  350 (397)
Q Consensus       273 ~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  350 (397)
                      +..+. ++++.|.|......+                                 +.. ...+.+++++..|.+.+    .
T Consensus       184 v~~v~~~~~~~d~p~~r~~~~---------------------------------~~~~~~~~~v~~~~~~W~lsl----l  226 (417)
T COG2223         184 IAAVLAWLGMNDVPEHRASVK---------------------------------PQLPAQLKAVFSNKDTWLLSL----L  226 (417)
T ss_pred             HHHHHHHHHhCCChhhhcccc---------------------------------ccchhHHHHHhcCcchHHHHH----H
Confidence            65554 444566654211000                                 001 22345555555555333    3


Q ss_pred             HHHHhhhhHHHHHhHHHHHHH-cCCChh
Q 015968          351 LFQQLAGINAVVYYSTSVFRS-VGIESD  377 (397)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~  377 (397)
                      ++..+.++..+..++|.++++ .|.+..
T Consensus       227 Y~~tFG~Fvgfs~~l~~~~~~~fg~~~~  254 (417)
T COG2223         227 YFATFGGFVGFSAYLPMYLVTQFGLSPV  254 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence            444455678899999999886 688775

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.81  E-value=1.1e-17  Score=162.59  Aligned_cols=177  Identities=20%  Similarity=0.201  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhccc-----chHHH-HH
Q 015968          102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTRT-FQ  175 (397)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----Grr~~-l~  175 (397)
                      +...++.+++...   +.....+...|...++.|.+.++.  +.+ +.....+ ++.+++|+++||+     |||+. ++
T Consensus        13 ~~~~~~~l~~~~g---l~~~~~~~~l~~~l~~~g~~~~~i--g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll   85 (491)
T PRK11010         13 NSAILLILGFASG---LPLALTSGTLQAWMTVENIDLKTI--GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLL   85 (491)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCHHHH--HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHH
Confidence            3444444444443   334466667888888889998777  665 3444443 6889999999999     99875 66


Q ss_pred             HhhHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhh
Q 015968          176 LDAVPLAAGAFLCATA---QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLP  252 (397)
Q Consensus       176 ~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  252 (397)
                      ++.++.+++.+++++.   ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..
T Consensus        86 ~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~  165 (491)
T PRK11010         86 ATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALW  165 (491)
T ss_pred             HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777765   4788899999999999999999999999999999999999999999999999999999888


Q ss_pred             cCCCCcchHHHHHHhHHHHHHHHHHhccCCCCh
Q 015968          253 LAGNPLWWRTMFGLAAIPSILLALGMGLSPESP  285 (397)
Q Consensus       253 l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~  285 (397)
                      +.+...|||+.|++.+++.++..+..++.||++
T Consensus       166 l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~  198 (491)
T PRK11010        166 LADRYLGWQGMYWLMAALLIPCIIATLLAPEPT  198 (491)
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            877436999999998887776666555677764

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.80  E-value=1.3e-17  Score=157.39  Aligned_cols=227  Identities=13%  Similarity=0.072  Sum_probs=156.7

Q ss_pred             HHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhH-HHHHHH-HHH
Q 015968          111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV-PLAAGA-FLC  188 (397)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~-~~~~~~-~~~  188 (397)
                      +..+...+..+...+.+|.+.+++|.+..+.  |++.+++.++..++++++|+++||+||+........ ..++.. ..+
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i--g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~   88 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI--GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS   88 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            3444445556677788889999999999888  999999999999999999999999998544322221 111222 234


Q ss_pred             HhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhH
Q 015968          189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAA  268 (397)
Q Consensus       189 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~  268 (397)
                      ..+++++.+++.|+++|.+.+...+...++..++  .++|++.++....+..+|.+++|.+++.+.+. .|||+.|++.+
T Consensus        89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~-~g~~~~f~~~~  165 (382)
T TIGR00902        89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM-FDEQNILAILT  165 (382)
T ss_pred             HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH-cChhHHHHHHH
Confidence            4678999999999999998888888887777654  46789999999999999999999999998877 79999998876


Q ss_pred             HHHHHHHHHhccCCCCh-HHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhHHHHHHH
Q 015968          269 IPSILLALGMGLSPESP-RWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGA  347 (397)
Q Consensus       269 ~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (397)
                      +..++.++.. .+++++ +.    ++ ++                         +++.++....++++|++..+...+..
T Consensus       166 ~~~~~~~~~~-~~~~~~~~~----~~-~~-------------------------~~~~~~~~~~~~~l~~~~~~~~l~~~  214 (382)
T TIGR00902       166 AGLAFMLIGF-LIKPTIPPK----DA-IP-------------------------EDESQGDSAFIALLKNPMNLRFLAAV  214 (382)
T ss_pred             HHHHHHHHHH-HcCCCCCCC----cc-cc-------------------------ccccccchhHHHHHcChHHHHHHHHH
Confidence            5533333333 333331 10    00 00                         00001122356777776655554443


Q ss_pred             HHHHHHHhhhhHHHHHhHHHHHHHcCCChh
Q 015968          348 ALFLFQQLAGINAVVYYSTSVFRSVGIESD  377 (397)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  377 (397)
                      .+...    .......|.|.++++.|.+..
T Consensus       215 ~l~~~----~~~~~~~~~~~~l~~~g~s~~  240 (382)
T TIGR00902       215 CLIQG----AHAAYYGFSAIYWQAAGISAS  240 (382)
T ss_pred             HHHHH----HHHHHHHHHHHHHHHCCCCHh
Confidence            33322    245566678888888998875

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.80  E-value=1.4e-18  Score=167.41  Aligned_cols=286  Identities=16%  Similarity=0.164  Sum_probs=195.2

Q ss_pred             HHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHH
Q 015968          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (397)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~  182 (397)
                      |.+++..++......-....++.+.+.++++++.+..+.  +|+.++....+.+..|+.+.+.||+|.|++.++|.++..
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~--~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~  122 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQI--AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAA  122 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHH--HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHH
Confidence            444444444443333333444567899999999999887  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchHHHHHHHH-HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchH
Q 015968          183 AGAFLCATAQSVQTMIIGR-VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR  261 (397)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~r-~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  261 (397)
                      ++.++.++++++|.+++.. ++.|+|.|..+.....++..+|.+ +|+.+.|+..++.++|.++-|.+.-.+.+. .|||
T Consensus       123 ~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~-~G~r  200 (509)
T KOG2504|consen  123 LGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-KRALATGIAVSGTGVGTVVFPPLLKYLLSK-YGWR  200 (509)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-HHHHHHhhhhccCCcceeeHHHHHHHHHHH-hCcH
Confidence            9999999999999998887 788999999999999999988875 599999999999999998888888888777 8999


Q ss_pred             HHHHHhHHHHHHHHHHhccC-CCChHHHHH---cCCH-----HHHHHHHHHHhC--CcchH----HHHHHHHhhcCCC--
Q 015968          262 TMFGLAAIPSILLALGMGLS-PESPRWLFQ---QGKK-----SEAEKSIQTLYG--KERVS----EVMLDLTNAGQGS--  324 (397)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~---~~~~-----~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~--  324 (397)
                      +.+++.+.+.+-.++....+ |..++....   +.+.     +...+..++...  +....    ....+.++...+.  
T Consensus       201 ~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (509)
T KOG2504|consen  201 GALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRN  280 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccc
Confidence            99999888876666555444 322221000   0000     000000000000  00000    0011111111111  


Q ss_pred             -CCCccch---hhhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHcCCChh--HHHHHHHHHHHHHhhhhcc
Q 015968          325 -AEPEAGW---FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAANVFGNYSIS  396 (397)
Q Consensus       325 -~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~~  396 (397)
                       ..+....   .++++++.+..+.+.    ......+++....++|.+..+.|++..  .....++++..++|-++.+
T Consensus       281 ~~~~~~~~~~d~~ll~~~~fl~~~~~----~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G  354 (509)
T KOG2504|consen  281 SPLQAFLSMLDLSLLKDPKFLLLALS----NLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILG  354 (509)
T ss_pred             cchhhhhhhhhHHHHcCchHHHHHHH----HHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhh
Confidence             1111122   467777544444443    333344577888889999999999876  6677788888888776643

>TIGR00901 2A0125 AmpG-related permease

Probab=99.80  E-value=9.7e-18  Score=156.87  Aligned_cols=159  Identities=19%  Similarity=0.182  Sum_probs=127.4

Q ss_pred             hhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhccc-----chHHH-HHHhhHHHHHHHHHHHhh---
Q 015968          121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTRT-FQLDAVPLAAGAFLCATA---  191 (397)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----Grr~~-l~~~~~~~~~~~~~~~~~---  191 (397)
                      ..+++..|.+.+|+|++.++.  +++... .+...+ .+++|+++||+     ||||. ++.+.++.++...+.++.   
T Consensus         5 ~~~~~~~~~~~~~~g~s~~~~--g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~   80 (356)
T TIGR00901         5 GLVGNTLPYWLRSKNVSLKTI--GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS   80 (356)
T ss_pred             hhHHhHHHHHHHHcCCCHHHH--HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            345667899999999999888  888655 444454 89999999998     89886 466777777777677776   


Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcc--------hHHH
Q 015968          192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW--------WRTM  263 (397)
Q Consensus       192 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~--------w~~~  263 (397)
                      .+.+.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+... .+        ||+.
T Consensus        81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~-~g~~~~~~~~wr~~  159 (356)
T TIGR00901        81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP-EFANTGLITLWGYI  159 (356)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccccccHHH
Confidence            45666777777888888888888899999999999999999999999999999999999887765 45        9999


Q ss_pred             HHHhHHHHHHHHHHhcc-CCCC
Q 015968          264 FGLAAIPSILLALGMGL-SPES  284 (397)
Q Consensus       264 ~~~~~~~~~~~~~~~~~-~~e~  284 (397)
                      |++.++..++..+..++ .||+
T Consensus       160 f~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       160 FFWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhccCC
Confidence            99888877666555443 4554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.79  E-value=7e-18  Score=180.68  Aligned_cols=222  Identities=13%  Similarity=0.059  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHH---hhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 015968          143 QGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL---DAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYI  219 (397)
Q Consensus       143 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~  219 (397)
                      .++..+++.+.++++++++|+++||+|||+++..   ..++.++..+.....++++.++++|+++|++.+...+...+++
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l  133 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSIL  133 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhh
Confidence            3788889999999999999999999999997533   2223333333333458999999999999999999999999999


Q ss_pred             hcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhccCCCChHHHHHcCCHHHHHH
Q 015968          220 SEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEK  299 (397)
Q Consensus       220 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  299 (397)
                      .+++++++|++++++..++..+|.++||++++++... .+|++.|+..+++.++.+++.+++|+++...  .....+ ..
T Consensus       134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~  209 (1140)
T PRK06814        134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS-GNFVILVALLMGIAVLGWLASLFIPKTGNAA--PDLKID-RN  209 (1140)
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCCeec-cc
Confidence            9999999999999999999999999999999999876 7999999555555565555666666653210  000000 00


Q ss_pred             HHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH-cCCChh-
Q 015968          300 SIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESD-  377 (397)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-  377 (397)
                               ..+    +          ....++.+.+++.++...+..++..+.    ...+..++|.++++ .|.+.. 
T Consensus       210 ---------~~~----~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~~~~~  262 (1140)
T PRK06814        210 ---------IIR----S----------TITLLKYAKADKRIWLAILGISWFWLV----GAVVLSQLPLLAKETLGGDENV  262 (1140)
T ss_pred             ---------hHH----H----------HHHHHHHHhcCchHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHcCCchHH
Confidence                     000    0          011244566666555555544433332    34455678888776 577654 


Q ss_pred             -HHHHHHHHHHHHHhhhhc
Q 015968          378 -VAASALVGAANVFGNYSI  395 (397)
Q Consensus       378 -~~~~~~~~~~~~~g~~~~  395 (397)
                       +......+++.++|.+++
T Consensus       263 ~g~~~~~~~~g~~ig~~~~  281 (1140)
T PRK06814        263 ATLFLAVFSVGVAVGSFLA  281 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence             555566667777776654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.79  E-value=2.1e-17  Score=177.40  Aligned_cols=162  Identities=20%  Similarity=0.078  Sum_probs=129.6

Q ss_pred             hhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHH---HhhchHHHHHHHH
Q 015968          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATAQSVQTMIIGR  201 (397)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~r  201 (397)
                      .+.+.+..+++.+......+++.+++.++++++++++|+++||+|||++++++.++.+++.++.   ...++++.++++|
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  110 (1146)
T PRK08633         31 LIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVT  110 (1146)
T ss_pred             HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            3556677778877666656899999999999999999999999999999999887766555443   3457899999999


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC--------CcchHHHHHHhHHHH-H
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN--------PLWWRTMFGLAAIPS-I  272 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~~~w~~~~~~~~~~~-~  272 (397)
                      ++.|++.+...+...+++.|++|+++|++++++...+..+|.++|+++++.+...        ..+|.+.+.+.++.. +
T Consensus       111 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (1146)
T PRK08633        111 FLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAV  190 (1146)
T ss_pred             HHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988653        234555554444333 3


Q ss_pred             HHHHHhccCCCChH
Q 015968          273 LLALGMGLSPESPR  286 (397)
Q Consensus       273 ~~~~~~~~~~e~~~  286 (397)
                      +.+++.+++|+.+.
T Consensus       191 ~~~~~~~~~~~~~~  204 (1146)
T PRK08633        191 LGLIFAYRLPKVPA  204 (1146)
T ss_pred             HHHHHHhcCcCCCC
Confidence            34444555677654

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.78  E-value=6.2e-17  Score=153.94  Aligned_cols=170  Identities=24%  Similarity=0.208  Sum_probs=138.3

Q ss_pred             HHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhccc-----chHH-HHHHhhHHHHHHH
Q 015968          112 GAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTR-TFQLDAVPLAAGA  185 (397)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----Grr~-~l~~~~~~~~~~~  185 (397)
                      .++..++..+.....+|.+.++.|++.++.  |++..+...  .+..+++|+++||+     |||+ +++++.++.+++.
T Consensus         7 l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i--g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~   82 (402)
T PRK11902          7 LGFASGLPLALTSGTLQAWMTVEGLDIQTI--GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI   82 (402)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence            344445556666778888888889999998  888666654  68899999999999     8765 7888888888888


Q ss_pred             HHHHhh---chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHH
Q 015968          186 FLCATA---QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT  262 (397)
Q Consensus       186 ~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  262 (397)
                      .+.++.   .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+...|||.
T Consensus        83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~  162 (402)
T PRK11902         83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN  162 (402)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence            777776   35777888878888888888889999999999999999999999999999999999988888765359999


Q ss_pred             HHHHhHHHHHHHHHHhccCCCCh
Q 015968          263 MFGLAAIPSILLALGMGLSPESP  285 (397)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~e~~  285 (397)
                      .|++.+++.++..+..++.||++
T Consensus       163 ~f~i~a~~~l~~~l~~~~~~e~~  185 (402)
T PRK11902        163 TYLLMAGLMLAGALTTLWAPEPE  185 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCc
Confidence            99998887766655555667654

>PTZ00207 hypothetical protein; Provisional

Probab=99.78  E-value=9.1e-17  Score=156.17  Aligned_cols=169  Identities=12%  Similarity=0.088  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHH
Q 015968          102 VLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL  181 (397)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  181 (397)
                      +|..+..........+..+ .++.+.+.+++++|++..+.  +++.++. ..+.+++++.|+++||+|+|++++++.+++
T Consensus        26 Rw~~lva~~~~~~~~g~~y-~fsv~s~~L~~~lgls~~~l--~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~  101 (591)
T PTZ00207         26 RFALLVLGAFCSICTSFMY-AFNLISGAMQARYNLTQRDL--STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVF  101 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcCHHHH--HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            3434444444444444433 23457788999999999887  8887764 345567788999999999999999999999


Q ss_pred             HHHHHHHHhh------chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHH-HHHHhhhcC
Q 015968          182 AAGAFLCATA------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILA-ALVAGLPLA  254 (397)
Q Consensus       182 ~~~~~~~~~~------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~  254 (397)
                      +++.++++++      ++++.+++.|++.|++.+..++....++.++|| ++||.+.|+...+..+|+++ +++..+++.
T Consensus       102 ~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        102 CLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999987      689999999999999999988888899999997 67999999999999999874 666655543


Q ss_pred             CCCcchHHHHHHhHHHHHHHHHHh
Q 015968          255 GNPLWWRTMFGLAAIPSILLALGM  278 (397)
Q Consensus       255 ~~~~~w~~~~~~~~~~~~~~~~~~  278 (397)
                         .+|++.|++.+++.++..++.
T Consensus       181 ---~~~~~~fl~l~vl~~vv~ll~  201 (591)
T PTZ00207        181 ---DNTSAYFFFLMSFALVVGILA  201 (591)
T ss_pred             ---HhHHHHHHHHHHHHHHHHHHH
Confidence               468888888887776655443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.78  E-value=4.9e-17  Score=153.57  Aligned_cols=219  Identities=13%  Similarity=0.080  Sum_probs=151.9

Q ss_pred             HhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchH----HHHHHhhHHHHHHHHHHHhhch
Q 015968          118 YHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT----RTFQLDAVPLAAGAFLCATAQS  193 (397)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr----~~l~~~~~~~~~~~~~~~~~~~  193 (397)
                      ...+.+.+.+|.+.+++|.+..+.  |++.+++.++..++++++|+++||+|||    +.+.+...+.  ........++
T Consensus        18 ~~~g~~~p~l~~~l~~~g~s~~~i--G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~   93 (382)
T PRK11128         18 FAYGVFLPFWSVWLKGQGYTPETI--GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHS   93 (382)
T ss_pred             HHHHHHhhhHHHHHHhcCCCHHHH--HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhccc
Confidence            334566778888889999999888  9999999999999999999999999984    3332222221  2223344688


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHH
Q 015968          194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL  273 (397)
Q Consensus       194 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~  273 (397)
                      ++.+++.|++.|++.+...+...+++.++  .++|+++.+....+..+|.++||++++.+.+. .|||..|++.++..++
T Consensus        94 ~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~-~g~~~~f~~~~~~~~~  170 (382)
T PRK11128         94 FWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW-FGEQAILWILTAGVAS  170 (382)
T ss_pred             HHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH-cChhHHHHHHHHHHHH
Confidence            99999999999999888888877777776  34578888888888999999999999998876 7999999887765554


Q ss_pred             HHHHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhHHHHHHHHHHHHH
Q 015968          274 LALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQ  353 (397)
Q Consensus       274 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (397)
                      .++..++.||.++.    ++.+                          ++.++...++++++|++..+...+...+....
T Consensus       171 ~~~~~~~~~~~~~~----~~~~--------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~  220 (382)
T PRK11128        171 MLLGQLLRPTIMPQ----GESR--------------------------QQESAGWPAWKALLKEPTVWRFLLCVSLLQGS  220 (382)
T ss_pred             HHHHHHccCCCCCc----cccc--------------------------cccccccchHHHHHcChhHHHHHHHHHHHHHH
Confidence            44444444443110    0000                          00001123567788887666555443333222


Q ss_pred             HhhhhHHHHHhHHHHHHHcCCChh
Q 015968          354 QLAGINAVVYYSTSVFRSVGIESD  377 (397)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~g~~~~  377 (397)
                          ......+.+.++++.|++..
T Consensus       221 ----~~~~~~~~~~~~~~~g~s~~  240 (382)
T PRK11128        221 ----HAAYYGFSAIYWQAAGYSAS  240 (382)
T ss_pred             ----hHhHHHHHHHHHHHCCCCHh
Confidence                33445566777788888865

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.77  E-value=2.9e-18  Score=152.42  Aligned_cols=144  Identities=20%  Similarity=0.184  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 015968          141 VLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYIS  220 (397)
Q Consensus       141 ~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~  220 (397)
                      ...|++.+.|.+...+.++.+|.++||+|||++++++++..++..++.+.+.|+..+++.|++.|+..|- ..++.++++
T Consensus        68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rAiis  146 (451)
T KOG2615|consen   68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRAIIS  146 (451)
T ss_pred             hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHHHHH
Confidence            3458999999999999999999999999999999999999999999999999997777789999999754 566789999


Q ss_pred             cccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCC---CCcchHHHH--HHhHHHHHH-HHHHhccCCCCh
Q 015968          221 EISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---NPLWWRTMF--GLAAIPSIL-LALGMGLSPESP  285 (397)
Q Consensus       221 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~w~~~~--~~~~~~~~~-~~~~~~~~~e~~  285 (397)
                      |.+++|+|+.+++.+.....+|.++||.+|+++.+   ....+...+  ++..++... ..+..+++||+-
T Consensus       147 dV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  147 DVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             hhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            99999999999999999999999999999999877   211222222  233333333 344566789984

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.77  E-value=1.8e-16  Score=140.77  Aligned_cols=251  Identities=21%  Similarity=0.251  Sum_probs=197.1

Q ss_pred             HHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHH
Q 015968          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (397)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~  182 (397)
                      +..+..+.+..+...-..+.+.+.++.+++++|++.+..  |++.++..+.+.+.+++..+++.|+|.++.+..++++.+
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~a--GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~   88 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVA--GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIA   88 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHH
Confidence            334444444455555566777889999999999999998  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHH
Q 015968          183 AGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT  262 (397)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~  262 (397)
                      ++.++-... +.+.++.+-.+.|.+.+......+..+-+.||++ -+..+++|.....+|..+++.+...+.++..+||.
T Consensus        89 ~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~  166 (395)
T COG2807          89 AGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG  166 (395)
T ss_pred             HHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence            999988776 7788889999999999999999999999999976 69999999999999999999999888887568999


Q ss_pred             HHHHhHHHHHHHHHHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhHH
Q 015968          263 MFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKV  342 (397)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (397)
                      ...+.++++++.++.++  |...|     ++.                           ...+.+..+...++|++.-|.
T Consensus       167 aL~~WAl~allAl~~Wl--Pq~~r-----~~~---------------------------~~~~~~~~~~~~vw~~~~aW~  212 (395)
T COG2807         167 ALGFWALLALLALLIWL--PQALR-----EQA---------------------------ASIATKLVSVRKVWRSPLAWQ  212 (395)
T ss_pred             HHHHHHHHHHHHHHHHh--hhccc-----ccc---------------------------cccccccccccccccCchhHH
Confidence            99888888888777653  22111     000                           000112223345788866666


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhHHHHHHHcCCChh--HHHHHHHHHHHHHhhhhc
Q 015968          343 VSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGAANVFGNYSI  395 (397)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~g~~~~  395 (397)
                      +.+.+.+    +...+|.+..|+|.++.+.|++..  +....++.+.++..+++.
T Consensus       213 vtLfmGl----qS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~  263 (395)
T COG2807         213 VTLFMGL----QSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLI  263 (395)
T ss_pred             HHHHHHh----hHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHH
Confidence            5554444    444588899999999999999986  555666666666666654

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.77  E-value=1.1e-17  Score=161.47  Aligned_cols=172  Identities=26%  Similarity=0.355  Sum_probs=137.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHH
Q 015968          101 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP  180 (397)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~  180 (397)
                      +.+..+...++......+.....+..++.+..|+|-++..   .|+.+...++.+++.++.|+++|.+|||.+++.+.++
T Consensus        41 ~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~---~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l  117 (599)
T PF06609_consen   41 RFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNW---SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLL  117 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccc---hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHH
Confidence            3343333344444444444444456778999999987554   5999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcch
Q 015968          181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWW  260 (397)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w  260 (397)
                      ..+++++++-++|...++++..+.|+|.|.... ....++|..|.|.|+...++......+...+++.++..+... .+|
T Consensus       118 ~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~-~~W  195 (599)
T PF06609_consen  118 GVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH-SGW  195 (599)
T ss_pred             HHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC-CCc
Confidence            999999999999999999999999999777664 455689999999998887777766666666777887766554 799


Q ss_pred             HHHHHHhHHHHHHHHHH
Q 015968          261 RTMFGLAAIPSILLALG  277 (397)
Q Consensus       261 ~~~~~~~~~~~~~~~~~  277 (397)
                      ||.|++.+++..+.+++
T Consensus       196 Rw~~~~~~i~~~i~~vl  212 (599)
T PF06609_consen  196 RWIFYIFIIWSGIALVL  212 (599)
T ss_pred             chHHHHHHHHHHHHHHH
Confidence            99999998877665544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.77  E-value=1.3e-17  Score=162.65  Aligned_cols=180  Identities=14%  Similarity=0.101  Sum_probs=136.2

Q ss_pred             hhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHH---HHhhchHHHHHHHH
Q 015968          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL---CATAQSVQTMIIGR  201 (397)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~r  201 (397)
                      ...+++.+++|.+..+.  ++......++..++.++.|+++||+|||+++.++.++..++.+.   ...+++...+++++
T Consensus       272 ~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (490)
T PRK10642        272 YMPSYLSHNLHYSEDHG--VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGL  349 (490)
T ss_pred             HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            34455667789887766  67778888899999999999999999999988887654433322   22345677788889


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhccC
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS  281 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~  281 (397)
                      ++.|++.+........++.|.+|++.|++++++.+....+++.++|.+.+.+.+...+|+..+++..+++++.++..+++
T Consensus       350 ~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~  429 (490)
T PRK10642        350 LMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM  429 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            99998877777777888899999999999999754445555667777777766543457777776666777766667778


Q ss_pred             CCChHHHHHc-----CCHHHHHHHHHHHhC
Q 015968          282 PESPRWLFQQ-----GKKSEAEKSIQTLYG  306 (397)
Q Consensus       282 ~e~~~~~~~~-----~~~~~~~~~~~~~~~  306 (397)
                      ||+|+++.++     ++.+++++.+++++.
T Consensus       430 pes~~~~~~~~~~~~~~~~~a~~~l~~~~~  459 (490)
T PRK10642        430 KETANRPLKGATPAASDIQEAKEILVEHYD  459 (490)
T ss_pred             ccccCCCCCCccccccchhhHHHHhhcccc
Confidence            9999987654     778888888888873

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.77  E-value=2e-16  Score=142.56  Aligned_cols=250  Identities=18%  Similarity=0.172  Sum_probs=190.6

Q ss_pred             HHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHH
Q 015968          107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF  186 (397)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~  186 (397)
                      ..+....++.++......++.|.+++.|+++..+.  +++...++.+|.+++++.|++.+|+|+|+-++.|+.++++++.
T Consensus        16 v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a--~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~   93 (422)
T COG0738          16 VLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA--SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA   93 (422)
T ss_pred             HHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH--HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            34445556667777777889999999999999999  9999999999999999999999999999999999999999998


Q ss_pred             HHH---hhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC-------
Q 015968          187 LCA---TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-------  256 (397)
Q Consensus       187 ~~~---~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------  256 (397)
                      +..   ...++..++++-++.|.|.+...+.+..+++.+.+++.....+++.+.+..+|.+++|++++.+..+       
T Consensus        94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~  173 (422)
T COG0738          94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS  173 (422)
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence            874   5678999999999999999999999999999999998788999999999999999999999887652       


Q ss_pred             -----------CcchHHHHHHhHHHHHHHHHHhccC--CCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCC
Q 015968          257 -----------PLWWRTMFGLAAIPSILLALGMGLS--PESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQG  323 (397)
Q Consensus       257 -----------~~~w~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (397)
                                 ...|++.|...+...+++.+.....  |+.+..                                +.++
T Consensus       174 ~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~--------------------------------~~~~  221 (422)
T COG0738         174 AAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA--------------------------------APSL  221 (422)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc--------------------------------cccc
Confidence                       1237788877777666655544432  332210                                0001


Q ss_pred             CCCCccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH-cCCChh--HHHHHHHHHHHHHhhhh
Q 015968          324 SAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESD--VAASALVGAANVFGNYS  394 (397)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~  394 (397)
                      .++++....++++++..+.-.++.+++...    -..+..|++.++.+ .|++..  .........+.++|-++
T Consensus       222 ~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~----Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFi  291 (422)
T COG0738         222 GASGSAGLSSLFQNKHLRLGVLAIFLYVGA----EVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFI  291 (422)
T ss_pred             cccccchHHHHHhChHHHHHHHHHHHHHhH----HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            111122567888887777766666655554    45677788888887 677765  33444444555555544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.76  E-value=2.4e-17  Score=159.63  Aligned_cols=154  Identities=19%  Similarity=0.190  Sum_probs=131.9

Q ss_pred             hhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcc-cchHHHHHHhhHHHHHHHHHHHhhchHHH-HHHHH
Q 015968          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQSVQT-MIIGR  201 (397)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~r  201 (397)
                      ..+..++.+++|++..+.  +++.+.+.....+..+++|+++|| +|||++++++.++++++.++++++.+... ++++|
T Consensus        35 ~~l~~yl~~~lg~~~~~a--~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~  112 (489)
T PRK10207         35 GILAVFFVKQLGFSQEQA--FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIAL  112 (489)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            446778889999998888  899999998888889999999999 99999999999999999999998876444 55889


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCccc--chhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhc
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  279 (397)
                      +++|+|.|...+...++++|.+|+++  |+.++++++.+.++|..+||.+++.+.+. .|||+.|++.++..++.++.++
T Consensus       113 ~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~-~gw~~~F~i~~i~~~~~~~~~~  191 (489)
T PRK10207        113 GTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK-FGYSVTYNLCGAGLIIALLVYF  191 (489)
T ss_pred             HHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998874  47789999999999999999999999887 7999999887654444443333


Q ss_pred             c
Q 015968          280 L  280 (397)
Q Consensus       280 ~  280 (397)
                      +
T Consensus       192 ~  192 (489)
T PRK10207        192 A  192 (489)
T ss_pred             H
Confidence            3

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.75  E-value=7.9e-16  Score=145.89  Aligned_cols=156  Identities=15%  Similarity=0.118  Sum_probs=117.6

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHH-HHHHHHHhhhhhhcccchHHHH-HHhhHHHHHHHHHHHhhchHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLA-GATVGSFTGGSLADKFGRTRTF-QLDAVPLAAGAFLCATAQSVQTMIIGRVL  203 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  203 (397)
                      ..+++.+++|.+.++.  |++.+...+ ++.++++++++ +||+|||+.+ +.+.++.+++.++.+++++++.+++.+.+
T Consensus        38 ~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  114 (393)
T PRK15011         38 LSIFLTDEVHARPAMV--GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVF  114 (393)
T ss_pred             HHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3445788999999888  998776544 66666666666 9999998875 45566666777778888999988777666


Q ss_pred             HHHhhhhhhhhhhhhhhcccCcccc--hhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHH-hcc
Q 015968          204 AGIGIGISSAIVPLYISEISPTEIR--GALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG-MGL  280 (397)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~-~~~  280 (397)
                      .|...+...+....++.|+.+++.|  +...++...+..+|.+++|.+++.+.+. .|||+.|++.++..++..+. .++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~-~gw~~~f~~~~~~~~~~~~~~~~~  193 (393)
T PRK15011        115 LSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG-FSFTVMYLSAAVAFIVCGVMVWLF  193 (393)
T ss_pred             HHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHhh
Confidence            5555556777778888888776655  3445788888999999999999998876 79999999888777655544 445


Q ss_pred             CCCCh
Q 015968          281 SPESP  285 (397)
Q Consensus       281 ~~e~~  285 (397)
                      +||.+
T Consensus       194 ~~~~~  198 (393)
T PRK15011        194 LPSMR  198 (393)
T ss_pred             cCccC
Confidence            67664

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.73  E-value=1.3e-15  Score=144.58  Aligned_cols=158  Identities=16%  Similarity=0.127  Sum_probs=116.6

Q ss_pred             hhchhhH-HHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHH---hh-----
Q 015968          121 GVVNGAL-EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---TA-----  191 (397)
Q Consensus       121 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~---~~-----  191 (397)
                      ..+.+.. .++.+++|.+..+.  +++.+++.+++.++++++|+++||+|||++++.+.+..+++.....   +.     
T Consensus        19 ~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (396)
T TIGR00882        19 SAYFPFFPIWLHDVNGLSKTDT--GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQS   96 (396)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3334444 45677899999888  9999999999999999999999999999999887766655443221   11     


Q ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHH
Q 015968          192 QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS  271 (397)
Q Consensus       192 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~  271 (397)
                      +.+..+++.+++.|++.+...+....+..|..  ++++...+.......+|.+++|.+++.+.+  .+|++.|++.+++.
T Consensus        97 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~--~~~~~~f~~~~~~~  172 (396)
T TIGR00882        97 NILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS--IDPQIVFWLGSGFA  172 (396)
T ss_pred             HHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc--cCchHHHHHHHHHH
Confidence            12344566778888888777777777776653  234566777778889999999999988754  58999999988877


Q ss_pred             HHHHHHhcc-CCCC
Q 015968          272 ILLALGMGL-SPES  284 (397)
Q Consensus       272 ~~~~~~~~~-~~e~  284 (397)
                      ++..++.++ .||+
T Consensus       173 ~~~~~~~~~~~~~~  186 (396)
T TIGR00882       173 LILMLLLMFAKPKA  186 (396)
T ss_pred             HHHHHHHHHhCCCC
Confidence            666554444 3443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.73  E-value=1.7e-16  Score=153.63  Aligned_cols=151  Identities=19%  Similarity=0.204  Sum_probs=132.9

Q ss_pred             hHHHHHHH--hCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcc-cchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHH
Q 015968          126 ALEYLAKD--LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV  202 (397)
Q Consensus       126 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~  202 (397)
                      +..++.++  +|++..+.  +++.+.+.+++.++++++|+++|| +|||++++++.++.+++.++.+++++++.+++.|+
T Consensus        33 L~~yl~~~~~lg~s~~~a--g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~  110 (475)
T TIGR00924        33 LAVYLVQQAGLGFSQEQA--FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLG  110 (475)
T ss_pred             HHHHHHhCCCCCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence            44455666  89998888  999999999999999999999999 89999999999999999999999988889999999


Q ss_pred             HHHHhhhhhhhhhhhhhhcccCccc---chhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhc
Q 015968          203 LAGIGIGISSAIVPLYISEISPTEI---RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (397)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  279 (397)
                      +.|++.|...+...++++|++|+++   |+.+.++++.+.++|.++||++++.+.+. .+|++.|++.++..++..+..+
T Consensus       111 l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~-~g~~~~f~~~~~~~~~~~l~~~  189 (475)
T TIGR00924       111 TIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN-YGYHVGFNLAAVGMVIGLLTFF  189 (475)
T ss_pred             HHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998764   88899999999999999999999998776 7899999887765554444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=6.3e-17  Score=144.82  Aligned_cols=151  Identities=19%  Similarity=0.168  Sum_probs=135.9

Q ss_pred             HHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhh
Q 015968          130 LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIG  209 (397)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  209 (397)
                      .+++...+.++...|++.+.+.+.+.+.+++.|.+.||+|+|..+++|++++...++++++.++++.++++|.++|+|.+
T Consensus        95 ~~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA  174 (464)
T KOG3764|consen   95 PAEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSA  174 (464)
T ss_pred             chhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHH
Confidence            44444444444444999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhcccCccc-chhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhccC
Q 015968          210 ISSAIVPLYISEISPTEI-RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS  281 (397)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~  281 (397)
                      .......++++|.||.++ |+.++|+.-.+..+|.++||.+||.+.+. .|.+..|.+.+++.++-..+.+++
T Consensus       175 ~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~-~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  175 FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF-AGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh-cCCcCcHHHHHHHHHHHHHHHHhe
Confidence            999999999999999865 79999999999999999999999999987 899999999999988877665554

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.69  E-value=3.8e-15  Score=142.56  Aligned_cols=153  Identities=16%  Similarity=0.065  Sum_probs=103.2

Q ss_pred             hhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHH---hhc-----hHH
Q 015968          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---TAQ-----SVQ  195 (397)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~---~~~-----~~~  195 (397)
                      .....++.+++|++..+.  |++.+++.+++.++++++|+++||+|||++++++..+.+++.....   .++     ...
T Consensus        31 ~~~~~~l~~~~g~s~~~~--g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (420)
T PRK09528         31 SFFPIWLHDINGLSGTDT--GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILL  108 (420)
T ss_pred             HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334556777799999888  9999999999999999999999999999999887666554433211   111     111


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHH
Q 015968          196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA  275 (397)
Q Consensus       196 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  275 (397)
                      ..++.+++.|.+.....+....+..+ + .++++..++.......+|..++|++++.+.+  .+|++.|++.+++.++.+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~--~~~~~~f~~~~~~~~~~~  184 (420)
T PRK09528        109 GAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN--INPQINFWLGSGSALILL  184 (420)
T ss_pred             HHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh--cCchHhHHHHHHHHHHHH
Confidence            11222233333222222223233222 2 2346778888888899999999999998865  489999988887776666


Q ss_pred             HHhccCC
Q 015968          276 LGMGLSP  282 (397)
Q Consensus       276 ~~~~~~~  282 (397)
                      ++.++.+
T Consensus       185 ~~~~~~~  191 (420)
T PRK09528        185 VLLFFAK  191 (420)
T ss_pred             HHHhccc
Confidence            5555543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.67  E-value=3.9e-15  Score=145.01  Aligned_cols=149  Identities=24%  Similarity=0.257  Sum_probs=123.9

Q ss_pred             hhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcc-cchHHHHHHhhHHHHHHHHHHHhhc-hHHHHHHHH
Q 015968          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQ-SVQTMIIGR  201 (397)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r  201 (397)
                      .....++.+++|++..+.  +++.+.+........+++|+++|| +|||++++++.++.+++.+++++++ +.+.+++.|
T Consensus        42 ~~l~~yl~~~lg~s~~~a--~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~  119 (500)
T PRK09584         42 GIMAVYLVKQLGMSEADS--ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGM  119 (500)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            346667889999998877  777777766666666789999999 5999999999999999998888874 566677889


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCccc--chhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHH
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA  275 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  275 (397)
                      ++.|++.|...+...+++.|++|+++  |..++++++.+.++|..+||++++.+.+. .|||+.|++.++..++.+
T Consensus       120 ~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~-~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        120 ATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK-YGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHH
Confidence            99999999888888899999998653  35678889999999999999999999876 799999998776544433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.64  E-value=1.1e-14  Score=139.31  Aligned_cols=150  Identities=23%  Similarity=0.200  Sum_probs=120.8

Q ss_pred             hhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhccc-chHHHHHHhhHHHHHHHHHHHhhc-hHHHHHHHHH
Q 015968          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQ-SVQTMIIGRV  202 (397)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~  202 (397)
                      ....++.+++|++..+.  +.+.+.+.+...++++++|+++||+ |||++++++.++.+++.++.+... +...+++...
T Consensus        31 ~L~~yL~~~lgls~~~a--~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~  108 (493)
T PRK15462         31 LLILYLTNQLKYDDNHA--YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLA  108 (493)
T ss_pred             HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence            35556778899999888  8999999999999999999999999 999999999999999987766543 2233444444


Q ss_pred             HHHHhhhhhhhhhhhhhhcccCcc--cchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHH
Q 015968          203 LAGIGIGISSAIVPLYISEISPTE--IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (397)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~  277 (397)
                      +.+++.|...+...++++|.+|++  +|..++++++.+.++|+.++|++.+.+.+. .||++.|.+.++..++.++.
T Consensus       109 li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~-~Gw~~~F~iaaigm~l~li~  184 (493)
T PRK15462        109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE-YSWAMGFGLAAVGMIAGLVI  184 (493)
T ss_pred             HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh-hChHHHHHHHHHHHHHHHHH
Confidence            555666666677788999999875  689999999999999999999999998776 79999998876654444443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.64  E-value=4.6e-14  Score=134.70  Aligned_cols=152  Identities=19%  Similarity=0.133  Sum_probs=110.7

Q ss_pred             hhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccch-HHHHHHhhHHHHHHHHHHHhhchHHHHHHHHH
Q 015968          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQLDAVPLAAGAFLCATAQSVQTMIIGRV  202 (397)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~  202 (397)
                      +++.+++.+++|++..+.  |++.+++.++..++++++|.++||+|| |+++.++.++..++..+..+.++++.+++.|+
T Consensus        23 ~~l~~~l~~~~g~s~~~i--Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (418)
T TIGR00889        23 VTLGSYMSKTLHFSGAEI--GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLL  100 (418)
T ss_pred             HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            556678888899999988  999999999999999999999999965 78888888888888888888899999999999


Q ss_pred             HHHHhhhhhhhhhhhhhh--------cccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHH
Q 015968          203 LAGIGIGISSAIVPLYIS--------EISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL  274 (397)
Q Consensus       203 l~G~~~~~~~~~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~  274 (397)
                      +.|++.+...+...++..        |......|.+..|      .+|.++++++++.+... ..|+. |++.++..++.
T Consensus       101 l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~-~~~~~-f~~~~~~~~~~  172 (418)
T TIGR00889       101 ANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE-LSNIQ-LYITAGSSALL  172 (418)
T ss_pred             HHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhccc-chhHH-HHHHHHHHHHH
Confidence            999987666665544321        2222222334443      35777777777766322 34654 44555555555


Q ss_pred             HHHhccCCCCh
Q 015968          275 ALGMGLSPESP  285 (397)
Q Consensus       275 ~~~~~~~~e~~  285 (397)
                      .++.+++||+|
T Consensus       173 ~~~~~~~~e~~  183 (418)
T TIGR00889       173 GVFALTLPDIP  183 (418)
T ss_pred             HHHHhcCCCCC
Confidence            55556678775

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.63  E-value=1.5e-14  Score=145.03  Aligned_cols=140  Identities=15%  Similarity=0.037  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccC
Q 015968          145 WIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISP  224 (397)
Q Consensus       145 ~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~  224 (397)
                      +...+..++.+++.++.|+++||+|||++++++.++.++++++.++.++...+++++++.|++.++.++...++++|++|
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P  678 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP  678 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            33556668889999999999999999999999999999999999998888888888999999888888999999999999


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhccCCCChH
Q 015968          225 TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPR  286 (397)
Q Consensus       225 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~  286 (397)
                      .+.|++++|+.++...+|.+++|++++.+...  +....|++.+++.++.+++.+++||+..
T Consensus       679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~~  738 (742)
T TIGR01299       679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTRG  738 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            99999999999999999999999999877653  3566777777777777777777898753

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.63  E-value=8e-14  Score=135.16  Aligned_cols=257  Identities=20%  Similarity=0.138  Sum_probs=169.7

Q ss_pred             cCcchHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHH
Q 015968           97 KSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL  176 (397)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~  176 (397)
                      +..+..|..-.+..++..+.       ....+.+..+..-|....  +++..+..+...+..++.|.++||+.||++++.
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~-------~va~~wlv~~lt~S~~~v--alv~~a~~LP~~Llsl~aG~laDr~drrrili~   80 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQ-------TVALAWLVTQLTGSPLMV--ALVQAASTLPILLLSLFAGALADRFDRRRILIL   80 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence            34444454444444444443       334455555554444444  899999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhh-----chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhh
Q 015968          177 DAVPLAAGAFLCATA-----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL  251 (397)
Q Consensus       177 ~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  251 (397)
                      +-++.++..+..++.     .+.+.+++.-++.|++.+...|...+++.|+.|+++...++++.....++..++||.++|
T Consensus        81 ~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG  160 (524)
T PF05977_consen   81 SQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGG  160 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHH
Confidence            988777655443322     478889999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCcchHHHHHHhHHHHHHHHHHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccch
Q 015968          252 PLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGW  331 (397)
Q Consensus       252 ~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (397)
                      .+... .|-.+.|++.++..++.++.++..+..++.  .+...++..+                          .-+..+
T Consensus       161 ~Lva~-~G~~~~f~inalsfl~~i~~l~~~~~~~~~--~~~~~e~~~~--------------------------~l~~G~  211 (524)
T PF05977_consen  161 ILVAF-FGAAAAFLINALSFLISILALLRWKPPPPP--SSLPRERFFS--------------------------ALREGL  211 (524)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHccccccc--cccchhhhhh--------------------------hHHHHH
Confidence            98765 677888888777665554444333322110  0000000000                          011233


Q ss_pred             hhhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH-cCCChh--HHHHHHHHHHHHHhhhhc
Q 015968          332 FDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESD--VAASALVGAANVFGNYSI  395 (397)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~  395 (397)
                      +.+.+++..+.+++...++.+.    ...+...+|.+.++ .|.+..  +......+++.++|+++.
T Consensus       212 ryv~~~~~l~~~l~~~~~~~l~----~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~  274 (524)
T PF05977_consen  212 RYVRSSPPLRSVLLRSFLFNLF----ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLL  274 (524)
T ss_pred             HHHhcchHHHHHHHHHHHHHHh----hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455444443332222221    22333447777654 566654  666777888888887764

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.63  E-value=4.8e-14  Score=133.72  Aligned_cols=154  Identities=18%  Similarity=0.146  Sum_probs=126.6

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  205 (397)
                      ...++++++|++..+.  +++.+...++..++.+++|+++||+|||+.+..+.+..++........++.+.+++.+++.+
T Consensus       239 ~p~~l~~~~~~~~~~~--g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  316 (393)
T PRK15011        239 MPLFIINELHLPEKLA--GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNA  316 (393)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4446677889988777  88888777778889999999999999999888777666665555556678888888898888


Q ss_pred             HhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhccCCC
Q 015968          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPE  283 (397)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e  283 (397)
                      ++.+...+....+..|.+|. +|+.++++++....+|..+++.+++.+.+. .||++.|++.+++.++.++..++.||
T Consensus       317 ~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        317 IYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI-WNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            88877777777888999985 589999999998999999999999998876 78999998888888777777766654

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.62  E-value=3.7e-15  Score=119.32  Aligned_cols=136  Identities=26%  Similarity=0.339  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcc
Q 015968          147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE  226 (397)
Q Consensus       147 ~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~  226 (397)
                      .+.+.++..++.++.|++.||+|||+.+..+..+..++.++....++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34556778889999999999999999999999999999988888899999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhcc-CCC
Q 015968          227 IRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL-SPE  283 (397)
Q Consensus       227 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~e  283 (397)
                      +|++..++......+|..+++.+.+.+.+. .+|++.|++.+++.++..+..++ .||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQF-LGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcc-cchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999988876 78999998888777666554433 454

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.62  E-value=7.9e-14  Score=133.06  Aligned_cols=164  Identities=17%  Similarity=0.215  Sum_probs=123.0

Q ss_pred             HhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhc----ccchHHHHHHh-hHHHHHHHHHHHhhchH
Q 015968          120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGRTRTFQLD-AVPLAAGAFLCATAQSV  194 (397)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~Grr~~l~~~-~~~~~~~~~~~~~~~~~  194 (397)
                      .....+..+.+.+++|++....  +++..+..+...+.+|+.|+++|    |+|||++++++ .+..+++.++.+++++.
T Consensus        20 ~~l~~~~l~~yl~~lg~~~~~~--~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~   97 (477)
T TIGR01301        20 WALQLSLLTPYVQELGIPHAWA--SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADI   97 (477)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchh
Confidence            3444445666778899988777  89999999999999999999999    59999988775 66666666777776554


Q ss_pred             H-----------------HHHHHHHHHHHhhhhhhhhhhhhhhcccCcccc--hhhhhHHHHHHHHHHHHHHHHhhhcC-
Q 015968          195 Q-----------------TMIIGRVLAGIGIGISSAIVPLYISEISPTEIR--GALGSVNQLFICVGILAALVAGLPLA-  254 (397)
Q Consensus       195 ~-----------------~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~l~-  254 (397)
                      +                 .++++..+..++.....+...++++|.+|+++|  +.+.++...+.++|.++|+.+++... 
T Consensus        98 ~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~  177 (477)
T TIGR01301        98 GHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGL  177 (477)
T ss_pred             hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            2                 223333344557777888889999999998865  57899999999999999999987641 


Q ss_pred             -C-------C-----CcchHHHHHHhHHHHHHHHHH-hccCCCCh
Q 015968          255 -G-------N-----PLWWRTMFGLAAIPSILLALG-MGLSPESP  285 (397)
Q Consensus       255 -~-------~-----~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~  285 (397)
                       .       .     ..+.++.|++.+++.++..++ .++.+|.|
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       178 YKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence             1       0     026789999888777665554 45568865

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.62  E-value=2.1e-13  Score=129.26  Aligned_cols=174  Identities=15%  Similarity=0.031  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHH--HHHHHHHHHHHHHhh-hhhhcccchHHHHHHhhHHH-H
Q 015968          107 GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWI--VSSLLAGATVGSFTG-GSLADKFGRTRTFQLDAVPL-A  182 (397)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~-g~l~d~~Grr~~l~~~~~~~-~  182 (397)
                      ..+...++..+...+...+..|.+.++.|.+.++.  |++  .++..+...+.++++ ++.+||+||||.+++...+. +
T Consensus         4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i--Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~   81 (390)
T TIGR02718         4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL--AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVS   81 (390)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHH
Confidence            34445566677777788889999999999999888  886  456677777788888 55799999998875555332 2


Q ss_pred             HHHHHHH-h--hch-HHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCc
Q 015968          183 AGAFLCA-T--AQS-VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL  258 (397)
Q Consensus       183 ~~~~~~~-~--~~~-~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  258 (397)
                      +.....+ +  ..+ ...++...++.++..+...+....+..|..++++++...+....+..+|.++|+...+.+.+. .
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~-~  160 (390)
T TIGR02718        82 ACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK-F  160 (390)
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence            2222222 1  222 333444445566666677777777888888888888888888888889999998888777766 7


Q ss_pred             chHHHHHHhHHHHHHHHHHhccCCC
Q 015968          259 WWRTMFGLAAIPSILLALGMGLSPE  283 (397)
Q Consensus       259 ~w~~~~~~~~~~~~~~~~~~~~~~e  283 (397)
                      |||..|++.+++.++..+..++++|
T Consensus       161 gw~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       161 GQRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999998887766555555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.60  E-value=5.4e-14  Score=133.95  Aligned_cols=154  Identities=19%  Similarity=0.158  Sum_probs=129.0

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  205 (397)
                      ..|.+.++.|.+..+.  +++.+.+.++..++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+.+..++.|
T Consensus       242 ~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  319 (406)
T PRK11551        242 WLPSLLVGQGLSRSQA--GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAG  319 (406)
T ss_pred             HHHHHHHhCCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            4566667789988777  89999999999999999999999999999998877777777777777778877778888889


Q ss_pred             HhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhccC
Q 015968          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS  281 (397)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~  281 (397)
                      ++.++..+...+++.|.+|+++|++.+++.+....+|..++|.+++.+.+...+|...++..+.+.++..++.+++
T Consensus       320 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        320 LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888899999999999999999999999999999999999988765667777777666665555554433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.58  E-value=1e-13  Score=133.32  Aligned_cols=158  Identities=17%  Similarity=0.179  Sum_probs=120.9

Q ss_pred             hhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcc----cch-HHHHHHhhHHHHHHHHHHHhhch------
Q 015968          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGR-TRTFQLDAVPLAAGAFLCATAQS------  193 (397)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~Gr-r~~l~~~~~~~~~~~~~~~~~~~------  193 (397)
                      ...+++.+++|++....  |++.++..+..++..|+.|+++||    +|| |+.++.+.+..+++.+++...++      
T Consensus        21 ~l~~~~~~~~g~s~~~~--g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~   98 (437)
T TIGR00792        21 YLLFFYTDVLGLSAAFV--GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGK   98 (437)
T ss_pred             HHHHHHHHccCCCHHHH--HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchH
Confidence            36677888999999888  999999999999999999999997    687 45677888888888877766543      


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhccc-CcccchhhhhHHHHHHHHHHHHHHHHhhhcC------CCCcchHHHHHH
Q 015968          194 VQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLPLA------GNPLWWRTMFGL  266 (397)
Q Consensus       194 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------~~~~~w~~~~~~  266 (397)
                      ...+++.+++.+++.+.......++..|+. ++++|++..++...+..+|.++++.+.+.+.      ....+|++.+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i  178 (437)
T TIGR00792        99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALV  178 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHH
Confidence            456677778888888877777778888887 4688999999888888887766555443332      123689999988


Q ss_pred             hHHHHHHHHHH-hccCCCC
Q 015968          267 AAIPSILLALG-MGLSPES  284 (397)
Q Consensus       267 ~~~~~~~~~~~-~~~~~e~  284 (397)
                      .+++.++..+. .++.+|+
T Consensus       179 ~~~l~~~~~~~~~~~~~e~  197 (437)
T TIGR00792       179 LALIGVVSLIICFFGTKER  197 (437)
T ss_pred             HHHHHHHHHHHHHcCCEec
Confidence            88877665544 4445654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.58  E-value=2.3e-14  Score=139.64  Aligned_cols=259  Identities=15%  Similarity=0.126  Sum_probs=185.7

Q ss_pred             HHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHH
Q 015968          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (397)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~  182 (397)
                      ...+.++++..+..++..+.+...+..+.+.|+++..+.  |++.+.+-++..+...+..+..-|.-|-+++-+|.++++
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s--G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~  173 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS--GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMG  173 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc--eeEeeecccchhhhhHhHHHhccccCccceeeechhHHH
Confidence            345555666677777777788888999999999999998  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh--------------------c---------------------------h----HH-HHHHHHHHHHHhhhh
Q 015968          183 AGAFLCATA--------------------Q---------------------------S----VQ-TMIIGRVLAGIGIGI  210 (397)
Q Consensus       183 ~~~~~~~~~--------------------~---------------------------~----~~-~~~~~r~l~G~~~~~  210 (397)
                      ++.+++++-                    +                           .    ++ .++++.++.|+|...
T Consensus       174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp  253 (735)
T KOG3626|consen  174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP  253 (735)
T ss_pred             HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence            999988751                    0                           0    22 567778999999999


Q ss_pred             hhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCC------------------cchHHHHHHhHHHHH
Q 015968          211 SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP------------------LWWRTMFGLAAIPSI  272 (397)
Q Consensus       211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------------------~~w~~~~~~~~~~~~  272 (397)
                      .++....|+-|....++-+..+|+..+...+|+++|.+++++..+.+                  ..|...|++.+.+.+
T Consensus       254 i~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~  333 (735)
T KOG3626|consen  254 IFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL  333 (735)
T ss_pred             CccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence            99999999999999998899999999999999999999998865310                  126677778888888


Q ss_pred             HHHHHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhh---ccchhHHHHHHHHH
Q 015968          273 LLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLF---SSRYWKVVSVGAAL  349 (397)
Q Consensus       273 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  349 (397)
                      +..+.++++|.+.+...++ +..+.   .+..+.+++          ...++.+.....+++.   +.....++.+...+
T Consensus       334 ~~a~p~f~fPk~lp~~~~~-~~~~~---~~~~k~~~~----------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l  399 (735)
T KOG3626|consen  334 FSAVPLFFFPKELPKSQKR-KRARD---LHVLKTESG----------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVL  399 (735)
T ss_pred             HHHHHHHhCcccCcccccc-chhhh---hcccccccc----------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHH
Confidence            8888888887764321111 00000   000000000          0001111111222222   22233355555666


Q ss_pred             HHHHHhhhhHHHHHhHHHHHHH-cCCChh
Q 015968          350 FLFQQLAGINAVVYYSTSVFRS-VGIESD  377 (397)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~  377 (397)
                      ....+...+.++..|+|.|++. +|.+++
T Consensus       400 ~~~~~~~~~~G~~tFlPKyLE~Qfg~sas  428 (735)
T KOG3626|consen  400 ASVIESLAITGYITFLPKYLETQFGISAS  428 (735)
T ss_pred             HHHHHHHHHhhHHHhhHHHHHHHcCCCHH
Confidence            6666666788899999999986 688875

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.57  E-value=2.9e-14  Score=136.46  Aligned_cols=147  Identities=12%  Similarity=0.037  Sum_probs=123.2

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhh
Q 015968          135 GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAI  214 (397)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  214 (397)
                      +.+....  +++.++..++..++.+++|+++||+|+|+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+.
T Consensus       258 ~~~~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~  335 (420)
T PRK09528        258 EQGTRVF--GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG  335 (420)
T ss_pred             CcchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            4554455  89999999999999999999999999999999999999998888888999999999999999998887777


Q ss_pred             hhhhhhcccCcccchhhhhH-HHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhc-cCCCC
Q 015968          215 VPLYISEISPTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG-LSPES  284 (397)
Q Consensus       215 ~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~e~  284 (397)
                      ...++.|.+|++.|++..+. ++....+|.++++.+.|.+.+. .||+..|++.+++.++..++.+ +++++
T Consensus       336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~-~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS-IGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh-hCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            88899999999988877655 6777889999999999999886 7899999988777765554433 33433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.56  E-value=5.7e-14  Score=134.07  Aligned_cols=141  Identities=16%  Similarity=0.114  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhc----hHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ----SVQTMIIGRVLAGIGIGISSAIVPLYI  219 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~~~~~~~~~~~~~  219 (397)
                      +.+.++..++..++.++.|+++||+|+|++++++.++.+++..+.....    +++.+++.+++.|++.+...+....++
T Consensus       254 g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i  333 (418)
T TIGR00889       254 SIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFV  333 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888999999999999999999999999999999999988876666532    245677789999999988888888999


Q ss_pred             hcccCcccchhhhhHHH-HHHHHHHHHHHHHhhhcCCCC-----cchHHHHHHhHHHHHHHHHH-hccCCCC
Q 015968          220 SEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNP-----LWWRTMFGLAAIPSILLALG-MGLSPES  284 (397)
Q Consensus       220 ~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~-----~~w~~~~~~~~~~~~~~~~~-~~~~~e~  284 (397)
                      .|++|+++|++++++.+ ....+|.++||+++|.+.+..     .||++.|++.+++.++..++ .++++|+
T Consensus       334 ~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       334 EKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999997 567899999999999887652     36999998887777665544 4456665

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.55  E-value=1.5e-13  Score=129.17  Aligned_cols=147  Identities=15%  Similarity=0.038  Sum_probs=123.5

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchH--HHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSV--QTMIIGRVL  203 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l  203 (397)
                      ..+.+.+++|.+..+.  +++.+.+.++..++.++.|+++||+|||+.+.++.++.+++.++..+.++.  ..+++..++
T Consensus       227 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T TIGR00890       227 LYKPYGQSLGLSDGFL--VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL  304 (377)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence            3444567788887766  888999999999999999999999999999999998888888777766533  334556778


Q ss_pred             HHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHH
Q 015968          204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA  275 (397)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  275 (397)
                      .|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+. .||++.|++.+++.++.+
T Consensus       305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE-IGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hchhhHHHHHHHHHHHhc
Confidence            88888888888888999999999999999999999999999999999998876 789999988777665543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.54  E-value=5.9e-13  Score=125.28  Aligned_cols=154  Identities=21%  Similarity=0.235  Sum_probs=127.4

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  205 (397)
                      ...++.+++|.+..+.  +++.+...+...++.++.|++.||+|||+++.++.++..+..+...+.++.+.+++.+++.|
T Consensus       222 ~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  299 (375)
T TIGR00899       222 MPLLIIHELGLPDKLA--GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNA  299 (375)
T ss_pred             hHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667889988777  88877777777888899999999999999998887777666666666778888888889999


Q ss_pred             HhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhccCCC
Q 015968          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPE  283 (397)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e  283 (397)
                      ++.+...+....++.|..|.+ ++.++++++....+|..++|.+++.+.+. .||+..|++.+++.++..++.++++|
T Consensus       300 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       300 IFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAER-WSYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHheecC
Confidence            998888888888899998864 67999999999999999999999988876 78999999988888777776655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.54  E-value=4.3e-13  Score=124.60  Aligned_cols=155  Identities=25%  Similarity=0.355  Sum_probs=138.0

Q ss_pred             hhhHHHHHHH-hCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHH-HHHHhhHHHHHHHHHHHhhchHHHHHHHH
Q 015968          124 NGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTR-TFQLDAVPLAAGAFLCATAQSVQTMIIGR  201 (397)
Q Consensus       124 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~r  201 (397)
                      ....+.+.++ +|.+..+.  +++.+...++..++.++.+++.||+|||+ .+..+.++..++.++....++.+.+++..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  272 (352)
T cd06174         195 LTYLPLYLQEVLGLSAAEA--GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVAL  272 (352)
T ss_pred             HHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            3344555444 48888777  99999999999999999999999999999 99999999999999999989999999999


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhccC
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS  281 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~  281 (397)
                      ++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+. .+|++.+++.+++.++..+..+++
T Consensus       273 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~-~~~~~~~~~~~~~~~i~~i~~~~~  351 (352)
T cd06174         273 LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT-GGYGGVFLILAALALLAALLLLLL  351 (352)
T ss_pred             HHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcchHHHHHHHHHHHHHHHheec
Confidence            9999999999999999999999999999999999999999999999999998876 799999999988888777665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.54  E-value=4.2e-13  Score=127.52  Aligned_cols=153  Identities=16%  Similarity=0.121  Sum_probs=126.0

Q ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 015968          127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGI  206 (397)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  206 (397)
                      .+.+..+.|.+  ..  ++..+.+.++..++.++.|++.||+|+|+.+..+.++.+++.++..+.++.+.+++..++.|+
T Consensus       239 ~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~  314 (399)
T PRK05122        239 ITLYYAARGWD--GA--ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGF  314 (399)
T ss_pred             HHHHHHHcccc--cc--hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34334455653  33  566778888899999999999999999999999988888888888888888888888999999


Q ss_pred             hhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhccCCCC
Q 015968          207 GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPES  284 (397)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~  284 (397)
                      +.+..++.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+. .||++.|++.+++.++.++..++++++
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        315 GFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-FGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99988888778888999999999999999999999998888888888776 789999998888777766655544433

>PRK09952 shikimate transporter; Provisional

Probab=99.53  E-value=5.3e-13  Score=128.37  Aligned_cols=158  Identities=18%  Similarity=0.101  Sum_probs=115.5

Q ss_pred             hhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHh---h-chHHHHHHH
Q 015968          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT---A-QSVQTMIIG  200 (397)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~---~-~~~~~~~~~  200 (397)
                      ...+++.+++|.+....  ..+..+..+...++.+++|+++||+|||++++.+.++.+++.+....   . ++.+.+++.
T Consensus       272 ~~~~y~~~~~g~s~~~~--~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (438)
T PRK09952        272 FALNYSTQNLGLPRELF--LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFS  349 (438)
T ss_pred             HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            35556777888887654  44555556667888899999999999999998887766555433322   2 234444555


Q ss_pred             HHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHH-HHHHHHHHHHHHHhhhcCCCC-cchHHHHHHhHHHHHHHHHHh
Q 015968          201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNP-LWWRTMFGLAAIPSILLALGM  278 (397)
Q Consensus       201 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~-~~w~~~~~~~~~~~~~~~~~~  278 (397)
                      .++.|++.+...+...+++.|.+|.+.|+.+.++.+ .+..+|+.++|.+.+.+.+.. .+|+..+.+.+++.++..+..
T Consensus       350 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~  429 (438)
T PRK09952        350 IMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA  429 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence            667788888888888899999999999988888854 445688899999998887642 458888887777777776666


Q ss_pred             ccCCCC
Q 015968          279 GLSPES  284 (397)
Q Consensus       279 ~~~~e~  284 (397)
                      +.++|+
T Consensus       430 ~~~~~~  435 (438)
T PRK09952        430 LLMKDN  435 (438)
T ss_pred             HHcccc
Confidence            656654

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.52  E-value=3.9e-12  Score=116.43  Aligned_cols=267  Identities=14%  Similarity=0.092  Sum_probs=178.2

Q ss_pred             cCcchHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHH
Q 015968           97 KSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL  176 (397)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~  176 (397)
                      +..+++|.+++..++..+.+++.+..+++...+....+| +.+..  -|+..+|.+.+....+++-|+.|++|-|..+++
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~--~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA--DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH--HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            556778888888888898888888888888888888899 44444  699999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhh------chHH--HHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHH
Q 015968          177 DAVPLAAGAFLCATA------QSVQ--TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALV  248 (397)
Q Consensus       177 ~~~~~~~~~~~~~~~------~~~~--~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  248 (397)
                      +.++.+++..+-..+      +.++  ....+..+.+.+.-.....-.-+..-||++++|..+..+-.++..+|.++|.+
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            999999999876554      2344  56677778887776666555577788999999999999988888899999888


Q ss_pred             HhhhcCCCC-----cchHH--HHHHhHHHHHHHH-HHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhh
Q 015968          249 AGLPLAGNP-----LWWRT--MFGLAAIPSILLA-LGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNA  320 (397)
Q Consensus       249 ~~~~l~~~~-----~~w~~--~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (397)
                      +...+..+.     ..|-.  .|+...++.++.+ ...+..++.|+....     .+....                   
T Consensus       195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps-----~s~~~~-------------------  250 (480)
T KOG2563|consen  195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPS-----ASQAAL-------------------  250 (480)
T ss_pred             ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc-----hhHhhh-------------------
Confidence            888776542     34554  3443444333322 233333333321000     000000                   


Q ss_pred             cCCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHcCCC--hhHHHHHHHHHHHHHhhhhcc
Q 015968          321 GQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIE--SDVAASALVGAANVFGNYSIS  396 (397)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~g~~~~~  396 (397)
                        ++..-..+.+.+++++.+....+...+...    .++...+.+...+...|++  ..+....++.+++++|+++++
T Consensus       251 --~~~~f~~si~~~~~n~~F~il~~~ygi~~g----~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~g  322 (480)
T KOG2563|consen  251 --QDASFPKSIKSCFKNRQFIILAICYGIGLG----LFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASG  322 (480)
T ss_pred             --hcCcHHHHHHHHHcCccHHHHHHHHhhhHH----HHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHH
Confidence              001122345667777655444444333322    3445555555444556777  335666667777777776653

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.51  E-value=1.6e-15  Score=147.34  Aligned_cols=258  Identities=17%  Similarity=0.171  Sum_probs=3.0

Q ss_pred             HHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHH
Q 015968          110 CLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA  189 (397)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~  189 (397)
                      ++..+......+.....++.+++.|+++..+.  |++.+.+-++..+..++..++.+|..|-+++-+|.+++++++++++
T Consensus         9 ~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~--G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~   86 (539)
T PF03137_consen    9 CLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS--GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA   86 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence            33333335556666778899999999999999  9999999999999999999999998888999999999999998876


Q ss_pred             hh------------c--------------------------------------hHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 015968          190 TA------------Q--------------------------------------SVQTMIIGRVLAGIGIGISSAIVPLYI  219 (397)
Q Consensus       190 ~~------------~--------------------------------------~~~~~~~~r~l~G~~~~~~~~~~~~~~  219 (397)
                      +-            .                                      -+..++++.++.|+|.+..++...+|+
T Consensus        87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi  166 (539)
T PF03137_consen   87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI  166 (539)
T ss_dssp             -----------------------------------------------------------------SSS------------
T ss_pred             ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence            41            0                                      034578888999999999999999999


Q ss_pred             hcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCC---------------------cchHHHHHHhHHHHHHHHHHh
Q 015968          220 SEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP---------------------LWWRTMFGLAAIPSILLALGM  278 (397)
Q Consensus       220 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------------------~~w~~~~~~~~~~~~~~~~~~  278 (397)
                      -|..+++.-+..+|+..+...+|+++|.++++.+.+.+                     ..|-..|++.+++.++..+.+
T Consensus       167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl  246 (539)
T PF03137_consen  167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL  246 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998766410                     125556666677777666667


Q ss_pred             ccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhh---cCCCCCCccchhhhhccchhHHHHHHHHHHHHHHh
Q 015968          279 GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNA---GQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQL  355 (397)
Q Consensus       279 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (397)
                      +++|+.-+...+..+  +.+...++  .++..++...+.++.   .+..+.-....+++++    +++++...+......
T Consensus       247 ~~FPk~lp~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~----Np~f~~~~la~~~~~  318 (539)
T PF03137_consen  247 FFFPKKLPGTSERQE--EKESSERK--EEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLT----NPVFMCLILAGVFES  318 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HcCCccCCCcccccc--hhhhhhcc--hhhhhhhcccccccccchhhhhhhHHHHHHHHhc----ChHHHHHHHHHHHHH
Confidence            777765321100000  00000000  000000000000000   0001111222333444    456666666666666


Q ss_pred             hhhHHHHHhHHHHHHH-cCCChh
Q 015968          356 AGINAVVYYSTSVFRS-VGIESD  377 (397)
Q Consensus       356 ~~~~~~~~~~~~~~~~-~g~~~~  377 (397)
                      .....+..|+|.+++. +|.+++
T Consensus       319 ~~~~G~~tF~pKylE~QF~~sas  341 (539)
T PF03137_consen  319 FIVSGFATFLPKYLESQFGLSAS  341 (539)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHH
Confidence            6788899999999986 677765

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.50  E-value=7.7e-13  Score=128.38  Aligned_cols=152  Identities=18%  Similarity=0.099  Sum_probs=114.8

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHH--HHHhhchHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF--LCATAQSVQTMIIGRVL  203 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~r~l  203 (397)
                      ...++++++|++..+.  ++..+.+.++..++.+++|+++||+|||+.++....+..++..  .....++...+.+.+++
T Consensus       281 ~p~yl~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (467)
T PRK09556        281 SPVYAFQELGFSKEDA--INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFA  358 (467)
T ss_pred             HHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            4457778899998888  8889999999999999999999999999877665544443332  22334566667778888


Q ss_pred             HHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHH-HHHHHHHHhhhcCCC-----------CcchHHHHHHhHHHH
Q 015968          204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGN-----------PLWWRTMFGLAAIPS  271 (397)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~-----------~~~w~~~~~~~~~~~  271 (397)
                      .|++..+..........|.+|++.||++.|+.+....+ |..++|.+.|.+.+.           ..+|+..|++.+++.
T Consensus       359 ~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~  438 (467)
T PRK09556        359 LGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAA  438 (467)
T ss_pred             HHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHH
Confidence            88654444443445677999999999999999988886 778888888888871           257999998887777


Q ss_pred             HHHHHHhc
Q 015968          272 ILLALGMG  279 (397)
Q Consensus       272 ~~~~~~~~  279 (397)
                      ++.++..+
T Consensus       439 ~~~~~~~~  446 (467)
T PRK09556        439 IGCICLMA  446 (467)
T ss_pred             HHHHHHHH
Confidence            66655543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.50  E-value=2.5e-13  Score=131.17  Aligned_cols=150  Identities=15%  Similarity=0.143  Sum_probs=121.6

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcc--cchHHHHHH--hhHHHHHHHHHHHhhchHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK--FGRTRTFQL--DAVPLAAGAFLCATAQSVQTMIIGR  201 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~--~Grr~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~r  201 (397)
                      ..+.+.+++|.+..+.  +++.++..++..++.++.|+++||  +++|+...+  +.++.+++.+++.+.++++.+++.+
T Consensus       263 ~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~  340 (455)
T TIGR00892       263 FLVPYAKDKGVDEYEA--AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYC  340 (455)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            4454556789988777  899999999999999999999997  344443333  3344445555666778899889999


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHH
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~  277 (397)
                      ++.|++.+...+...+++.|.+|++++++.+++++....+|.++||.+++.+.+...+|++.|++.+++.++..+.
T Consensus       341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            9999999988888899999999999999999999999999999999999998876457999999888776655543

>PRK12382 putative transporter; Provisional

Probab=99.50  E-value=1.1e-12  Score=124.43  Aligned_cols=149  Identities=16%  Similarity=0.164  Sum_probs=125.4

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  205 (397)
                      ..+.+.++.+.+.  .  ++....+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++..++.|
T Consensus       238 ~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  313 (392)
T PRK12382        238 FVSLYFASKGWAM--A--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTG  313 (392)
T ss_pred             HHHHHHHhcCCch--h--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3344445566543  3  55666777888899999999999999999999999988888888888888888888999999


Q ss_pred             HhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhc
Q 015968          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (397)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  279 (397)
                      ++.+..++.....+.|.+|+++|+++.++++....+|..++|.+.+.+.+. .||++.|++.+++.++.++..+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS-FGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHH
Confidence            999888888888889999999999999999999999999999999998876 7899999998887766665543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.49  E-value=6.4e-13  Score=125.58  Aligned_cols=145  Identities=20%  Similarity=0.131  Sum_probs=112.1

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHH--HHHHh--hchHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA--FLCAT--AQSVQTMIIGR  201 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~--~~~~~--~~~~~~~~~~r  201 (397)
                      ...++++++|.+..+.  +++.....++..++.++.|+++||+|||+.+..+..+..+..  ++..+  .++.+.+++..
T Consensus       242 ~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (394)
T TIGR00883       242 LPTYLTQTLGLSANSA--LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLV  319 (394)
T ss_pred             HHHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            3445557789888777  888889999999999999999999999998876555444333  22222  24667777778


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhH-HHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHH
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI  272 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~  272 (397)
                      ++.|++.+...+....++.|.+|+++|+++.++ +..+..+|..++|.+++.+.+....|++.++..++..+
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       320 LGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            888998888889999999999999999999988 45666788889999999988773338887766555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.48  E-value=3.2e-12  Score=120.78  Aligned_cols=148  Identities=11%  Similarity=0.009  Sum_probs=127.5

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  205 (397)
                      ..+.+.+++|.+....  |++.+...++..++.++.+++.||+|.|+.++++.++.++..++.++.++.+.+++.+++.|
T Consensus       227 ~~~~~l~~~g~s~~~~--g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g  304 (382)
T TIGR00902       227 FSAIYWQAAGISASAT--GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHC  304 (382)
T ss_pred             HHHHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence            3344446699998888  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhhhhhhhhcccCcccchhhhhHHH-HHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHh
Q 015968          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM  278 (397)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~  278 (397)
                      +..+...+....++.+. |+++|+.+.++++ ....+|.++|++++|.+.+. .|+ ..|++.+++.++..++.
T Consensus       305 ~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       305 GTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-LGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccH-HHHHHHHHHHHHHHHHH
Confidence            99999999999999998 8888999999986 46789999999999999987 576 55666666666555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03699 putative transporter; Provisional

Probab=99.47  E-value=2.3e-12  Score=122.23  Aligned_cols=155  Identities=14%  Similarity=0.063  Sum_probs=126.4

Q ss_pred             hhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHH
Q 015968          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL  203 (397)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  203 (397)
                      ....+++.+++|++..+.  +++.+.+.++..++.++.|+++||+|+|+++.....+.++..++....++.+.+.+..++
T Consensus       226 ~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (394)
T PRK03699        226 SWVPEYAQKKFGMSLEDA--GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILG  303 (394)
T ss_pred             HHHHHHHHHHcCCChHHh--hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence            334556667889998888  899999999999999999999999999999988887777777776677777777777788


Q ss_pred             HHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhccCC
Q 015968          204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSP  282 (397)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  282 (397)
                      .|++.+..++....+..|..+. .++...+.......+|..++|.+.+.+.+. .||+..+++.+++.++..+..++++
T Consensus       304 ~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        304 LGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAH-FGLQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHH-hCchhhhhhhHHHHHHHHHHHHHHH
Confidence            8998888888877788887764 467788888888899999999999998876 7899999888877766655544443

>TIGR00788 fbt folate/biopterin transporter

Probab=99.47  E-value=2.4e-12  Score=124.50  Aligned_cols=167  Identities=20%  Similarity=0.094  Sum_probs=122.2

Q ss_pred             HHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccc-----hHHHHHHhhHHHH-HHHHH
Q 015968          114 ILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-----RTRTFQLDAVPLA-AGAFL  187 (397)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-----rr~~l~~~~~~~~-~~~~~  187 (397)
                      +..++.........+.+.+++|++.++.  +.+.+...+...+-.+ +|+++||++     ||+.++++.++.. ++...
T Consensus        36 ~~qGl~~l~~~~~~~~l~~~lg~s~~~i--~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~  112 (468)
T TIGR00788        36 FVKGIAGLMRLPLSPMLTDDLGLDGARY--QRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGL  112 (468)
T ss_pred             HHhhHHHHhhhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHh
Confidence            3444443333446778888899999988  8889999998888555 999999998     7777787776663 44333


Q ss_pred             HHhhchHHHHH-HHHHHHHHhhhhhhhhhhhhhhcccCcccchhh---hhHHHHHHHHHHHHHHHHhhhcCCCCcchHHH
Q 015968          188 CATAQSVQTMI-IGRVLAGIGIGISSAIVPLYISEISPTEIRGAL---GSVNQLFICVGILAALVAGLPLAGNPLWWRTM  263 (397)
Q Consensus       188 ~~~~~~~~~~~-~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~  263 (397)
                      .+..++..... +..++.+++.+......-++..|..+ +++...   .+.......+|.++++.+++.+.+. .+|+..
T Consensus       113 l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~-~~~~~~  190 (468)
T TIGR00788       113 LPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK-TLTRIL  190 (468)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh-cCcchH
Confidence            34334544444 47789999999999999999999998 544433   3333444558999999999988776 789999


Q ss_pred             HHHhHHHHHHHHHHhccCCCCh
Q 015968          264 FGLAAIPSILLALGMGLSPESP  285 (397)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~e~~  285 (397)
                      |++.+++.++..+..++++|++
T Consensus       191 f~~~a~l~ll~~~~~~~~~E~~  212 (468)
T TIGR00788       191 FLITAALLLLQLFVSNLSKERR  212 (468)
T ss_pred             HHHHHHHHHHHHHHHHhccccc
Confidence            9998888777666666777763

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.46  E-value=2.5e-12  Score=121.43  Aligned_cols=149  Identities=19%  Similarity=0.184  Sum_probs=107.9

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHH--HHH------hhHHHHHHHHHHHhhchHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT--FQL------DAVPLAAGAFLCATAQSVQTM  197 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~--l~~------~~~~~~~~~~~~~~~~~~~~~  197 (397)
                      ...++.+++|.+..+.  +++.+...++..++.++.|+++||+|||+.  ...      +.++..+..+.....++.+..
T Consensus       238 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (399)
T TIGR00893       238 FPTYLVQERGLSILEA--GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAA  315 (399)
T ss_pred             HHHHHHHHhcccHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence            3445667789888777  899999999999999999999999999961  111      111111111111122344444


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHHhHHHHHHHHH
Q 015968          198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLAAIPSILLAL  276 (397)
Q Consensus       198 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-w~~~~~~~~~~~~~~~~  276 (397)
                      +...++.+++.+ ..+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+. .| |++.|++.+++.++..+
T Consensus       316 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~-~g~~~~~~~~~~~~~~~~~~  393 (399)
T TIGR00893       316 LALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT-TGSFAGALMVVAALALIGAL  393 (399)
T ss_pred             HHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC-CCchhHHHHHHHHHHHHHHH
Confidence            444444444444 6788889999999999999999999999999999999999999887 56 99999888777766555


Q ss_pred             Hh
Q 015968          277 GM  278 (397)
Q Consensus       277 ~~  278 (397)
                      ..
T Consensus       394 ~~  395 (399)
T TIGR00893       394 SY  395 (399)
T ss_pred             HH
Confidence            43

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.45  E-value=1e-12  Score=128.55  Aligned_cols=143  Identities=22%  Similarity=0.135  Sum_probs=111.5

Q ss_pred             hHH-HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh--chHHHHHHHHH
Q 015968          126 ALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--QSVQTMIIGRV  202 (397)
Q Consensus       126 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~  202 (397)
                      ..| ++.+++|.+..+.  +++.+.+.++..++.++.|+++||+|||++++++.++.++..++....  .+.+.+.+..+
T Consensus       297 ~lp~~l~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (496)
T PRK03893        297 LLPTYLKTDLGYDPHTV--ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF  374 (496)
T ss_pred             HHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            344 4546899998888  999999999999999999999999999999988877766665544332  34444444555


Q ss_pred             HHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHH
Q 015968          203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS  271 (397)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~  271 (397)
                      +.++...+..+....++.|.+|+++|++++++.+....+|..+||++++.+.+. .||++.+++.++..
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~-~g~~~~~~~~~~~~  442 (496)
T PRK03893        375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR-LDLGTALASLSFSL  442 (496)
T ss_pred             HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc-CChHHHHHHHHHHH
Confidence            554444444566778899999999999999999999999999999999999887 78888876655444

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.44  E-value=1.2e-11  Score=116.33  Aligned_cols=180  Identities=19%  Similarity=0.211  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccch-HHHHHHhhHHHHHH
Q 015968          106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQLDAVPLAAG  184 (397)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr-r~~l~~~~~~~~~~  184 (397)
                      +.++.+.+++......++.+..-.+.++++.+.+....||+.++..++.+++++++|+.+.|.|. |+.++.+.++.+++
T Consensus        36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g  115 (488)
T KOG2325|consen   36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIG  115 (488)
T ss_pred             HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHH
Confidence            33344445555555555544433334554444444444999999999999999999999999996 88999999999999


Q ss_pred             HHHH-Hhh---c-hHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCC-c
Q 015968          185 AFLC-ATA---Q-SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP-L  258 (397)
Q Consensus       185 ~~~~-~~~---~-~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~  258 (397)
                      +++. ++.   + ..+.++++|++.|+|.|. ....-+|+++-...++|.++++....+..+|.++||.++..+..-. .
T Consensus       116 ~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~  194 (488)
T KOG2325|consen  116 NLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEK  194 (488)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCC
Confidence            9887 332   3 678899999999999755 4667899999888889999999988888888888888776654310 1


Q ss_pred             c-----------hHHHHHHhHHHHHHHHHH-hccCCCChH
Q 015968          259 W-----------WRTMFGLAAIPSILLALG-MGLSPESPR  286 (397)
Q Consensus       259 ~-----------w~~~~~~~~~~~~~~~~~-~~~~~e~~~  286 (397)
                      |           +...-|+.+++.++.+++ .++++|..+
T Consensus       195 G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  195 GFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             ceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            1           334556777777666554 444666654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.44  E-value=1.1e-11  Score=117.37  Aligned_cols=150  Identities=13%  Similarity=0.083  Sum_probs=120.0

Q ss_pred             hhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHH-HHHHhhchHHHHHHHHHH
Q 015968          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA-FLCATAQSVQTMIIGRVL  203 (397)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~r~l  203 (397)
                      ...+.+.+++|.+..+.  +++.+.+.++..++.++.|+++||+|||..++. ..+..++. .+....++.+.++++.++
T Consensus       227 ~~~~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l  303 (390)
T PRK03545        227 YIEPFVQQVAGLSENFA--TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIA-IALLLVCLLLLLPAANSEWHLSVLSIF  303 (390)
T ss_pred             HHHHHHHHhcCCCccHH--HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            35566777789888777  899999999999999999999999998875544 44444433 344556778888888889


Q ss_pred             HHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhc
Q 015968          204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (397)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  279 (397)
                      .|++.+...+.....+.+..| ++|+++++++.....+|..+||+++|.+.+. .|++..|++.+++.++.++..+
T Consensus       304 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~-~g~~~~~~~~~~~~~~~~~~~~  377 (390)
T PRK03545        304 WGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH-LGLSSIGYVGAALALAALVWSI  377 (390)
T ss_pred             HHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHH
Confidence            999887766767778888876 5789999999999999999999999999987 8999999998888777665543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.44  E-value=3.2e-12  Score=121.80  Aligned_cols=135  Identities=21%  Similarity=0.163  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhccc
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS  223 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~  223 (397)
                      +.+.+++.++..++.+++|+++||+|||+.+..+.++.+++.+...+.++.+.+++.+++.|++.+...+....++.+..
T Consensus       261 g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  340 (408)
T PRK09874        261 GMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNS  340 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC
Confidence            56666777888899999999999999999999998888888877777788888889999999999999998888889999


Q ss_pred             CcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhc
Q 015968          224 PTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (397)
Q Consensus       224 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  279 (397)
                      ++++|++.++++.....+|..+||.+++.+.+. .||++.|++.+++.++..+..+
T Consensus       341 ~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        341 SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-YGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             CcccceeeehHHHHHHHHHHHhhHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998876 7899999998888777665543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.42  E-value=3.3e-12  Score=123.94  Aligned_cols=161  Identities=13%  Similarity=0.024  Sum_probs=122.0

Q ss_pred             hchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHh-----hc----
Q 015968          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT-----AQ----  192 (397)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~-----~~----  192 (397)
                      ......|.+.+++|.+..+.  ++......++..++.++.|+++||+|||+.+.++.++.+++.++.++     .+    
T Consensus       302 ~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (481)
T TIGR00879       302 AIMYYSPTIFENAGVSTDHA--FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSK  379 (481)
T ss_pred             ehHHHHHHHHHHcCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence            33456788888899988666  78888888999999999999999999999999998888877766652     11    


Q ss_pred             --hHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHH
Q 015968          193 --SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP  270 (397)
Q Consensus       193 --~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~  270 (397)
                        +...+....++.+.......+....++.|.+|+++|++++++.+....+|.++++.+.+.+.+. .+|++.|++.+++
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~-~~~~~~f~~~~~~  458 (481)
T TIGR00879       380 SSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES-IGVGGVFIFFGGL  458 (481)
T ss_pred             chhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccceehhHHHH
Confidence              2223333333333333334455667789999999999999999999999999999998888766 6899999888888


Q ss_pred             HHHHHHHh-ccCCCCh
Q 015968          271 SILLALGM-GLSPESP  285 (397)
Q Consensus       271 ~~~~~~~~-~~~~e~~  285 (397)
                      +++.+++. ++.||++
T Consensus       459 ~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       459 NVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHHHHHHHheecccCC
Confidence            76666554 4456553

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.42  E-value=2.5e-12  Score=122.22  Aligned_cols=139  Identities=25%  Similarity=0.224  Sum_probs=113.9

Q ss_pred             hhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHH-HHHhhchHHHHHHHHHH
Q 015968          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF-LCATAQSVQTMIIGRVL  203 (397)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~r~l  203 (397)
                      ...+++.+++|.+..+.  +++.+...++..++.++.|+++||+|||+.+.++.++.++..+ +....++.+.+.+..++
T Consensus       260 ~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (405)
T TIGR00891       260 LLPTYLKADLGLSPHTV--ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFF  337 (405)
T ss_pred             hhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            34556777889998888  8999999999999999999999999999999888776643332 33344566666777677


Q ss_pred             HHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHH
Q 015968          204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGL  266 (397)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-w~~~~~~  266 (397)
                      .|++.++..+....++.|.+|+++|++++|+.+....+|..++|++.+.+.+. .| |+..+..
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~g~~~~~~~~  400 (405)
T TIGR00891       338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR-LDEYGTALAS  400 (405)
T ss_pred             HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHh
Confidence            78777777788888999999999999999999999999999999999999887 55 8776654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.41  E-value=6.6e-12  Score=120.09  Aligned_cols=157  Identities=15%  Similarity=0.085  Sum_probs=129.2

Q ss_pred             hHHHHHHH-hCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHH
Q 015968          126 ALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA  204 (397)
Q Consensus       126 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  204 (397)
                      ..|.+.++ +|.+....  +++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.++.
T Consensus       245 ~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (417)
T PRK10489        245 LYPALADEVWQMGAAQI--GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALF  322 (417)
T ss_pred             hhHHHHHhccCCChhHh--HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            34444444 89888777  8999999999999999999999998888888888888888888888888888888888999


Q ss_pred             HHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHH-HHHhccCCC
Q 015968          205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL-ALGMGLSPE  283 (397)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~e  283 (397)
                      |++.+...+...+++.|..|++.|+++++++.....+|..+|+.+.|.+.+. .|++..+++.+++.++. ++....+++
T Consensus       323 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~  401 (417)
T PRK10489        323 GYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM-MTPVASASASGFGLLIIGVLLLLVLGE  401 (417)
T ss_pred             HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHhccc
Confidence            9988877777788999999999999999999999999999999999999876 67888887776665444 444444555


Q ss_pred             Ch
Q 015968          284 SP  285 (397)
Q Consensus       284 ~~  285 (397)
                      .+
T Consensus       402 ~~  403 (417)
T PRK10489        402 LR  403 (417)
T ss_pred             cc
Confidence            43

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.40  E-value=2.4e-11  Score=115.29  Aligned_cols=157  Identities=15%  Similarity=0.097  Sum_probs=118.9

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhc-hHHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ-SVQTMIIGRVLA  204 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~  204 (397)
                      ..|.+.+++|.+..+.  +++.+.+.++..++.++.|++.||+|||+.+..+..+.+++.++....+ +...+  .-++.
T Consensus       227 ~lp~~l~~~g~s~~~a--g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~  302 (393)
T PRK09705        227 WLPAFYIEIGASAQYS--GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVC  302 (393)
T ss_pred             HHHHHHHHcCCChhhh--hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHH
Confidence            3444445689988877  8999999999999999999999999999999888877777766554323 22222  23456


Q ss_pred             HHhhhhhhhhhhhhhhcccC-cccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHH-hccCC
Q 015968          205 GIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG-MGLSP  282 (397)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~  282 (397)
                      |++.+...+.......+.++ +++|++..++.+....++..++|.+.+.+.+...+|...|++.++..++..++ ..+.|
T Consensus       303 g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        303 GLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             HHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            88877777777666677775 56789999999999999999999999999887456888888877766555544 44567


Q ss_pred             CChH
Q 015968          283 ESPR  286 (397)
Q Consensus       283 e~~~  286 (397)
                      |++.
T Consensus       383 ~~~~  386 (393)
T PRK09705        383 ARFP  386 (393)
T ss_pred             cccc
Confidence            7643

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.40  E-value=1.2e-11  Score=119.65  Aligned_cols=152  Identities=17%  Similarity=0.113  Sum_probs=104.1

Q ss_pred             hhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhccc--chHHHH-HHhhHHHHHHHHHHHh--hchHHHHHH
Q 015968          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTF-QLDAVPLAAGAFLCAT--AQSVQTMII  199 (397)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--Grr~~l-~~~~~~~~~~~~~~~~--~~~~~~~~~  199 (397)
                      ....+++++.|.+..+.  +++...+.++..++.++.|+++||+  |||... +....+..++.++..+  ..+.+.+++
T Consensus       275 ~~P~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  352 (452)
T PRK11273        275 WSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMA  352 (452)
T ss_pred             HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHH
Confidence            34556666688887777  8888888899999999999999999  555433 2222223333222222  334444445


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHH-HHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHh
Q 015968          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGIL-AALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM  278 (397)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~  278 (397)
                      +.++.|.+..........+..|.+|++.||++.|+.+....+|.. ++|.+.+.+.+. .||++.|++.++.+++.++..
T Consensus       353 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~-~g~~~~f~~~~~~~~~~~~~~  431 (452)
T PRK11273        353 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSILAVILL  431 (452)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH-hcchHHHHHHHHHHHHHHHHH
Confidence            555555543333333345678999999999999999888888765 478888888876 689999988887776665554


Q ss_pred             c
Q 015968          279 G  279 (397)
Q Consensus       279 ~  279 (397)
                      .
T Consensus       432 ~  432 (452)
T PRK11273        432 I  432 (452)
T ss_pred             H
Confidence            4

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.40  E-value=1.4e-11  Score=116.36  Aligned_cols=148  Identities=18%  Similarity=0.186  Sum_probs=119.1

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  205 (397)
                      ..|.+.++.|.+....  +++.+...++..+++++.|++.||+|+|+++..+.++.+++.+...  + ...+....++.|
T Consensus       222 ~lp~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g  296 (381)
T PRK03633        222 LMPLYLNHQGMSDASI--GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG  296 (381)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence            4565666778887777  8889999999999999999999999999999888888777665443  2 233445667778


Q ss_pred             HhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhc
Q 015968          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (397)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  279 (397)
                      ++.....+.....+.|..|+++++...+.++....+|.++||.++|.+.+. .+|++.|++.+.+.++..+..+
T Consensus       297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN-YSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHH
Confidence            877777888888899999888778888888888999999999999999887 7899999888777766655543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.40  E-value=2.1e-11  Score=118.77  Aligned_cols=159  Identities=18%  Similarity=0.110  Sum_probs=114.9

Q ss_pred             hhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh--chH-H-HHHH
Q 015968          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--QSV-Q-TMII  199 (397)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~--~~~-~-~~~~  199 (397)
                      ....|.+.+++|.+....  .+......++..++.++.|+++||+|||++++.+.++.+++.++.+..  .+. + ..+.
T Consensus       291 ~~~~p~i~~~~g~~~~~~--~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~  368 (479)
T PRK10077        291 LYYAPEIFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  368 (479)
T ss_pred             HHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            345678888899887666  566667778889999999999999999999999999988887766543  111 1 2222


Q ss_pred             HHHHHHHhhhhh-hhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcC------CCCcchHHHHHHhHHHHH
Q 015968          200 GRVLAGIGIGIS-SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA------GNPLWWRTMFGLAAIPSI  272 (397)
Q Consensus       200 ~r~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~------~~~~~w~~~~~~~~~~~~  272 (397)
                      +.++.+++.+.. .+....++.|.+|+++|+.++++......+|.++++.+.+.+.      +. .+|++.|++.+++.+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~  447 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAH-FHNGFSYWIYGCMGV  447 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhh-ccCccHHHHHHHHHH
Confidence            334444444332 3566789999999999999999999998888888765554333      33 678888888877766


Q ss_pred             HHHHHh-ccCCCCh
Q 015968          273 LLALGM-GLSPESP  285 (397)
Q Consensus       273 ~~~~~~-~~~~e~~  285 (397)
                      +.+++. ++.||+.
T Consensus       448 ~~~~~~~~~~~e~~  461 (479)
T PRK10077        448 LAALFMWKFVPETK  461 (479)
T ss_pred             HHHHHHHhccccCC
Confidence            555544 4456664

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.39  E-value=1.4e-10  Score=109.36  Aligned_cols=223  Identities=19%  Similarity=0.145  Sum_probs=142.7

Q ss_pred             HhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccc-hHHHHHHhhHHHHHHHHHHHhhchHHH
Q 015968          118 YHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-RTRTFQLDAVPLAAGAFLCATAQSVQT  196 (397)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-rr~~l~~~~~~~~~~~~~~~~~~~~~~  196 (397)
                      ...+...+..+...++.|++..+.  |.+.++..+..+++++++|.++||.+ +|+++.+..++.++........++++.
T Consensus        16 ~~~G~~~p~~~~~L~~~G~s~~qI--G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~   93 (400)
T PF03825_consen   16 FAYGAFLPYLPLYLESRGFSGTQI--GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWW   93 (400)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            335555667777778899999999  99999999999999999999999986 577887777877777777778888998


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHH-hhhcCCC--CcchHHHHHHhHHHHHH
Q 015968          197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVA-GLPLAGN--PLWWRTMFGLAAIPSIL  273 (397)
Q Consensus       197 ~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~-~~~l~~~--~~~w~~~~~~~~~~~~~  273 (397)
                      +++..++..+......+...++..+....  ++.-.|-.-.++.+|-+++... ++.+...  ..+..+.+++.++..++
T Consensus        94 ~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l  171 (400)
T PF03825_consen   94 LFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLL  171 (400)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence            88888888888878888877777777653  3444555555555565554332 1111111  12233455666666655


Q ss_pred             HHHHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhHHHHHHHHHHHHH
Q 015968          274 LALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQ  353 (397)
Q Consensus       274 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (397)
                      .....+.+|+.|.....+.+                             .++....+..+++|++.....++...+... 
T Consensus       172 l~~~~l~lp~~~~~~~~~~~-----------------------------~~~~~~~~~~~llk~~~~~~Fll~~~l~~~-  221 (400)
T PF03825_consen  172 LAGFALFLPKTPPKRSAKES-----------------------------VKKLLGLDALKLLKNPRFLVFLLAAFLIGI-  221 (400)
T ss_pred             HHHHHHhCCCCccccccCCC-----------------------------cccccchHHHHHhcCccHHHHHHHHHHHHH-
Confidence            55556667877621000000                             000111223457777655544443333322 


Q ss_pred             HhhhhHHHHHhHHHHHHHcC-CChh
Q 015968          354 QLAGINAVVYYSTSVFRSVG-IESD  377 (397)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~g-~~~~  377 (397)
                         .......|.+.++++.| ++..
T Consensus       222 ---~~~~~~~f~~~yl~~~gg~~~~  243 (400)
T PF03825_consen  222 ---SHAAYYTFFSIYLQELGGYSGS  243 (400)
T ss_pred             ---HHHHHHHHHHHHHHHcccchhh
Confidence               24556777888899988 5543

>TIGR00897 2A0118 polyol permease family

Probab=99.38  E-value=3e-11  Score=114.95  Aligned_cols=150  Identities=17%  Similarity=0.112  Sum_probs=115.2

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHH-HhhHHHHHHHHHHHh-----hchHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-LDAVPLAAGAFLCAT-----AQSVQTMII  199 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~-~~~~~~~~~~~~~~~-----~~~~~~~~~  199 (397)
                      ..|.+.+++|.+..+.  +++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...+     .++.+.+++
T Consensus       244 ~~p~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~  321 (402)
T TIGR00897       244 FLPMFVAELGFSTSEW--LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALI  321 (402)
T ss_pred             HHHHHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Confidence            5566667899988877  88888899999999999999999999988764 333333333333221     246677777


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhc
Q 015968          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (397)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  279 (397)
                      ..++.|++.+...+ ....+.|..| ++|++++|+.+....+|..++|.+++.+.+. .||+..+++.+++.++..++..
T Consensus       322 ~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~-~g~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       322 IAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF-FGAIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHH
Confidence            88888988776554 3456677665 5799999999999999999999999999887 7899999988888776666554


Q ss_pred             c
Q 015968          280 L  280 (397)
Q Consensus       280 ~  280 (397)
                      |
T Consensus       399 ~  399 (402)
T TIGR00897       399 F  399 (402)
T ss_pred             H
Confidence            4

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.38  E-value=2.4e-11  Score=116.77  Aligned_cols=170  Identities=14%  Similarity=0.010  Sum_probs=141.1

Q ss_pred             HHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchH--HHHHHhhHHHHHHHHHHH
Q 015968          112 GAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT--RTFQLDAVPLAAGAFLCA  189 (397)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr--~~l~~~~~~~~~~~~~~~  189 (397)
                      ..+.+++ .+++.....+..+++|++..+.  ..+.-+..+..++|.+++|++.||+|.|  ++++++.+++.+..+...
T Consensus       291 ~l~~dg~-~ti~~~~~i~a~~~lg~s~~~l--~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~  367 (477)
T PF11700_consen  291 FLYSDGV-NTIISFAGIYATEVLGMSTTQL--IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGL  367 (477)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHhcCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHH
Confidence            3334444 3344455667777999999887  6777777888999999999999999999  899888888866665555


Q ss_pred             h--------hchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchH
Q 015968          190 T--------AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR  261 (397)
Q Consensus       190 ~--------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  261 (397)
                      +        .++.+.+.+.-++.|++.|+.++..-++.+++.|+.+.+..+|++....-..+++||++.+.+.+....-|
T Consensus       368 ~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r  447 (477)
T PF11700_consen  368 FGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQR  447 (477)
T ss_pred             HHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence            5        57888899999999999999999999999999999999999999999999999999999999988766689


Q ss_pred             HHHHHhHHHHHHHHHHhccCCCC
Q 015968          262 TMFGLAAIPSILLALGMGLSPES  284 (397)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~e~  284 (397)
                      +.++...++.++.++++++++.+
T Consensus       448 ~g~~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  448 YGFLFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             hHHHHHHHHHHHHHHHHhhccch
Confidence            99888888877777777666544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.37  E-value=1.5e-11  Score=120.52  Aligned_cols=161  Identities=17%  Similarity=0.110  Sum_probs=107.5

Q ss_pred             hHHHHHHHhCCCchhhH---------HHH-HHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhch--
Q 015968          126 ALEYLAKDLGIAENTVL---------QGW-IVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS--  193 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~--  193 (397)
                      ..|.+.++.|.+.....         ... ...+..++..++.++.++++||+|||++++++.++.+++.++.++..+  
T Consensus       310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~  389 (502)
T TIGR00887       310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL  389 (502)
T ss_pred             ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46666678887643210         001 233344566678889999999999999998888887777665554321  


Q ss_pred             -HHHHHHHH-HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCC---------cchHH
Q 015968          194 -VQTMIIGR-VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP---------LWWRT  262 (397)
Q Consensus       194 -~~~~~~~r-~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---------~~w~~  262 (397)
                       ....++.. ++..++..+..+....+.+|.+|.+.|++++++.+....+|.++++.+.+.+.+..         .++..
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  469 (502)
T TIGR00887       390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH  469 (502)
T ss_pred             chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence             11111111 11222222344556677899999999999999999999999999999988877631         34456


Q ss_pred             HHHHhHHHHHHHHHHhccCCCChH
Q 015968          263 MFGLAAIPSILLALGMGLSPESPR  286 (397)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~e~~~  286 (397)
                      .|++.+++.++..+..+++||+..
T Consensus       470 ~~~i~~~~~~~~~i~~~~lpEt~~  493 (502)
T TIGR00887       470 VLEIFALFMFLGILFTLLIPETKG  493 (502)
T ss_pred             HHHHHHHHHHHHHHHheEeccCCC
Confidence            777777777666666667798754

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09669 putative symporter YagG; Provisional

Probab=99.36  E-value=3e-11  Score=116.53  Aligned_cols=153  Identities=14%  Similarity=0.109  Sum_probs=110.2

Q ss_pred             hhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcc----cch-HHHHHHhhHHHHHHHHHHHhhch-----
Q 015968          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGR-TRTFQLDAVPLAAGAFLCATAQS-----  193 (397)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~Gr-r~~l~~~~~~~~~~~~~~~~~~~-----  193 (397)
                      ..+..++.+++|++....  |.+..+..+..++..|+.|.++||    +|| |+.++.+.+..+++.++....++     
T Consensus        30 ~~l~~~~t~~~gls~~~~--g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~  107 (444)
T PRK09669         30 LFLAYFYTDVFGLSAAIM--GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATG  107 (444)
T ss_pred             HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcch
Confidence            346678888999999888  999999999999999999999998    787 56666777777777665544432     


Q ss_pred             -HHHHHHHHHHHHHhhhhhhhhhhhhhhccc-CcccchhhhhHHHHHHHHHHHHHHHHhhh----cCC--CCcchHHHHH
Q 015968          194 -VQTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLP----LAG--NPLWWRTMFG  265 (397)
Q Consensus       194 -~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----l~~--~~~~w~~~~~  265 (397)
                       .+.+++..++.+.+.........++.+|+. ++++|.+..++-..+..+|..+++.+...    +..  ...+|+..+.
T Consensus       108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~  187 (444)
T PRK09669        108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMM  187 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence             455666666677766666667778999988 45778888777777777776666543322    221  1257888888


Q ss_pred             HhHHHHHHHHHHh
Q 015968          266 LAAIPSILLALGM  278 (397)
Q Consensus       266 ~~~~~~~~~~~~~  278 (397)
                      +.+++.++..+..
T Consensus       188 i~~ii~~v~~~~~  200 (444)
T PRK09669        188 VMGLLGVVLFFCC  200 (444)
T ss_pred             HHHHHHHHHHHHH
Confidence            8777775554433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.36  E-value=2.2e-11  Score=118.39  Aligned_cols=152  Identities=17%  Similarity=0.115  Sum_probs=108.6

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchH-------HHHHHhhHHHHHHHHHHHhhchHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRT-------RTFQLDAVPLAAGAFLCATAQSVQTMI  198 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr-------~~l~~~~~~~~~~~~~~~~~~~~~~~~  198 (397)
                      ..+++.+++|++..+.  +++.+++.++..++.+++|+++||+|||       ..+.+..++.+++.++....++.+..+
T Consensus       275 ~p~~l~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~  352 (476)
T PLN00028        275 IAEYFYDRFGLSLETA--GAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAI  352 (476)
T ss_pred             HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            4556677789998887  8999999999999999999999999875       233333333334444445555666555


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHh
Q 015968          199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM  278 (397)
Q Consensus       199 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~  278 (397)
                      +.-++.+++.+...+...+++.+..| ++|+...|+.+.+..+|+++++.+.+  .+...+|+..|++.+++.++..++.
T Consensus       353 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~~f~~~~~~~~i~~~~~  429 (476)
T PLN00028        353 VVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTETGISLMGVMIIACTLPV  429 (476)
T ss_pred             HHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhhHHHHHHHHHHHHHHHH
Confidence            55566677666565656666677655 67999999998888888888877654  2222579999999888877777666


Q ss_pred             ccCC
Q 015968          279 GLSP  282 (397)
Q Consensus       279 ~~~~  282 (397)
                      ++.+
T Consensus       430 ~~~~  433 (476)
T PLN00028        430 AFIH  433 (476)
T ss_pred             Hhee
Confidence            6554

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.36  E-value=2.9e-11  Score=116.09  Aligned_cols=157  Identities=22%  Similarity=0.200  Sum_probs=119.4

Q ss_pred             hhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhc----ccchHH-HHHHhhHHHHHHHHHHHhh-c------
Q 015968          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGRTR-TFQLDAVPLAAGAFLCATA-Q------  192 (397)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~Grr~-~l~~~~~~~~~~~~~~~~~-~------  192 (397)
                      ...+++.+.+|++....  |.+..+.-+..++..|+.|.++|    |+|||+ .++++.+..+++.+++... +      
T Consensus        23 ~~~~f~~~~~gl~~~~~--g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~  100 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALA--GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT  100 (428)
T ss_pred             HHHHHHHHHcCCCHHHH--HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence            46678888889999877  99999999999999999999999    899655 5567888888888777655 3      


Q ss_pred             -hHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCc-ccchhhhhHHHHHHHHHHHHHHHHhhhcCCC----C--cchHHHH
Q 015968          193 -SVQTMIIGRVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQLFICVGILAALVAGLPLAGN----P--LWWRTMF  264 (397)
Q Consensus       193 -~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~----~--~~w~~~~  264 (397)
                       ....+++..++..++.........++..|+.+. ++|.+..+.-..+..+|.++...+.+.+...    .  .+|++..
T Consensus       101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~  180 (428)
T PF13347_consen  101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA  180 (428)
T ss_pred             hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence             223456666777888888888888999999984 6899888888888888886555555554421    1  1799999


Q ss_pred             HHhHHHHHHHHHHh-ccCCC
Q 015968          265 GLAAIPSILLALGM-GLSPE  283 (397)
Q Consensus       265 ~~~~~~~~~~~~~~-~~~~e  283 (397)
                      ++.+++.++..++. +..+|
T Consensus       181 ~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  181 LVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHHhhhhhheeee
Confidence            88888876665544 44566

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.33  E-value=7.4e-11  Score=113.13  Aligned_cols=138  Identities=17%  Similarity=0.168  Sum_probs=100.3

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  205 (397)
                      ..|.+.++.|.+....  +.+.+.+.++..++.++.|+++||+|||+.+..+.++.++..++....++.....+.-++.|
T Consensus       253 ~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (426)
T PRK12307        253 LLPTYLAGEGFDTGVV--SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFG  330 (426)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence            4555556678887766  88888899999999999999999999999998888777666554443322111122223333


Q ss_pred             H--hhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHH
Q 015968          206 I--GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL  266 (397)
Q Consensus       206 ~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~  266 (397)
                      +  +..+..+..+.++.|.+|++.|++++|+......+|..++|++.+.+.+. .|+....++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~-~g~~~~~~~  392 (426)
T PRK12307        331 LMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT-MGLGAALTF  392 (426)
T ss_pred             HHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc-ccHHHHHHH
Confidence            3  22233445667889999999999999999999999999999999998876 565554333

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.33  E-value=3e-11  Score=116.10  Aligned_cols=151  Identities=19%  Similarity=0.118  Sum_probs=104.5

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhccc--ch-HHHHHHhhHHHHHHHHHHH--hhchHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GR-TRTFQLDAVPLAAGAFLCA--TAQSVQTMIIG  200 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--Gr-r~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~  200 (397)
                      ..+++.+++|++..+.  ++..+.+.++..++.++.|+++||+  ++ |.......+...+..+...  ...+...+.+.
T Consensus       266 ~p~~l~~~~g~s~~~a--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (434)
T PRK11663        266 GNLYMSETLGVDLVTA--NSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAAC  343 (434)
T ss_pred             HHHHHHhccCCCHHHH--HHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence            4445557789998887  8889999999999999999999999  33 3332222222111111111  12233333344


Q ss_pred             HHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhc
Q 015968          201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (397)
Q Consensus       201 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  279 (397)
                      .+..|++..........++.|.+|+++|++++|+.++...+|..++|.+.+.+.+. .||+..|++.+++.++..+..+
T Consensus       344 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~-~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        344 FFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI-WHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh-cccHHHHHHHHHHHHHHHHHHH
Confidence            44455543333333345678999999999999999999999999999999998887 7899999988888766655443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.33  E-value=6.8e-11  Score=115.24  Aligned_cols=156  Identities=12%  Similarity=0.135  Sum_probs=118.0

Q ss_pred             hhHHHHHHHhCCCchhhHHHHHHH-HHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHH---Hhh-chHHHHHH
Q 015968          125 GALEYLAKDLGIAENTVLQGWIVS-SLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATA-QSVQTMII  199 (397)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~  199 (397)
                      ...+++.+++|.+..+.  +++.. ...++.+++.+++|+++||+|+|+.+.++.++.++..++.   +.. ++.+.+.+
T Consensus       244 ~~~~~l~~~~G~s~~~~--g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~  321 (491)
T PRK11010        244 LTTTFLIRGVGFDAGEV--GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGA  321 (491)
T ss_pred             HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            35566677899998888  88874 5567899999999999999999988877666555544322   232 35555555


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhc
Q 015968          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (397)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  279 (397)
                      ..++..++.|...+...++..+..+++.+++..++.+....+|..+++.+.|.+.+. .||+..|.+.++++++.++...
T Consensus       322 ~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~-~G~~~~f~~~~~~~l~~l~~~~  400 (491)
T PRK11010        322 AVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA-HGWPTFYLFSVAAAVPGLLLLL  400 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHH
Confidence            556655555555566678888999998899999999999999988887888888876 6899999888888877766665


Q ss_pred             cCCC
Q 015968          280 LSPE  283 (397)
Q Consensus       280 ~~~e  283 (397)
                      ++++
T Consensus       401 ~~~~  404 (491)
T PRK11010        401 VCRQ  404 (491)
T ss_pred             HHHh
Confidence            5443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.32  E-value=1e-10  Score=112.47  Aligned_cols=155  Identities=15%  Similarity=0.026  Sum_probs=99.2

Q ss_pred             hhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHH--h--hchHHHHHH
Q 015968          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA--T--AQSVQTMII  199 (397)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~--~--~~~~~~~~~  199 (397)
                      ....+++.+++|.+..+.  ++..++..++..++.++.|+++||+|||++++++.++.++..+...  .  .++....+.
T Consensus       264 ~~lp~~l~~~~g~s~~~~--~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (432)
T PRK10406        264 TYMQKYLVNTAGMHANVA--SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFG  341 (432)
T ss_pred             HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            334556667789887777  7888887788888999999999999999988776665444332221  1  223332222


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHH-HHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHh
Q 015968          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM  278 (397)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~  278 (397)
                      .-++.+++.+...+....+++|++|++.|++++|+.+....+ .+...|.+.+.+... ..|...+++.++..++.++..
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~-g~~~~~~~~~~~~~~i~~~~~  420 (432)
T PRK10406        342 LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSI-GMETAFFWYVTLMAVVAFLVS  420 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHH
Confidence            222233333344455667889999999999999998765443 233467777655332 346666666666666555554


Q ss_pred             ccC
Q 015968          279 GLS  281 (397)
Q Consensus       279 ~~~  281 (397)
                      +++
T Consensus       421 ~~l  423 (432)
T PRK10406        421 LML  423 (432)
T ss_pred             HHh
Confidence            444

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.32  E-value=4.6e-11  Score=113.46  Aligned_cols=133  Identities=8%  Similarity=0.076  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhccc
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS  223 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~  223 (397)
                      +++.++..+...++.++.|++.||+|+|+.++++.++.++..++....++.+.+++.+++.|++..........++.+..
T Consensus       257 g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  336 (396)
T TIGR00882       257 GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF  336 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            78888888888999999999999999999999999988888887778889998899999999988777666777888888


Q ss_pred             CcccchhhhhH-HHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHH
Q 015968          224 PTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (397)
Q Consensus       224 ~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~  277 (397)
                      +++.+++..+. ++....+|.+++++++|.+.+. .||+..|++.+++.++..+.
T Consensus       337 ~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~-~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       337 DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS-IGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh-cccHHHHHHHHHHHHHHHHH
Confidence            88888776665 6778899999999999999887 78999999988887665554

>TIGR00895 2A0115 benzoate transport

Probab=99.31  E-value=7e-11  Score=111.84  Aligned_cols=128  Identities=19%  Similarity=0.102  Sum_probs=105.6

Q ss_pred             hhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHH
Q 015968          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL  203 (397)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  203 (397)
                      ....|.+.+++|.+..+.  +++.+...++..++.++.|+++||+|||+.+....+...+..++.....+.+.+++..++
T Consensus       270 ~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (398)
T TIGR00895       270 TNWLPKLMVELGFSLSLA--ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAI  347 (398)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            345678888899988777  899999999999999999999999999955444444333333333335677777888899


Q ss_pred             HHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhc
Q 015968          204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL  253 (397)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  253 (397)
                      .|++.+...+...+++.|.+|+++|++++++......+|..+||.++|.+
T Consensus       348 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       348 AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            99999999999999999999999999999999999999999999998865

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.31  E-value=1.6e-10  Score=109.26  Aligned_cols=144  Identities=15%  Similarity=0.067  Sum_probs=117.5

Q ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 015968          128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIG  207 (397)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  207 (397)
                      +.+.++.|.+..+.  +++.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+..++.+.+++..++.|++
T Consensus       229 ~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~  306 (382)
T PRK11128        229 AIYWQAAGYSASTI--GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGT  306 (382)
T ss_pred             HHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            33446789987777  8888888889999999999999999999999999999998888888889999999999999999


Q ss_pred             hhhhhhhhhhhhhcccCcccchhhhhHHH-HHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHH
Q 015968          208 IGISSAIVPLYISEISPTEIRGALGSVNQ-LFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (397)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~  276 (397)
                      .+...+....++.+. +++++++..+.+. ....+|..+||.++|.+.+. .|+ ..|+..+++.++.++
T Consensus       307 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~-~g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        307 FTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH-LGA-GVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccH-HHHHHHHHHHHHHHH
Confidence            988888888888887 4555688888775 55677889999999999887 566 455555655554443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.31  E-value=2.2e-10  Score=111.37  Aligned_cols=157  Identities=12%  Similarity=0.107  Sum_probs=109.7

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhc----ccch-HHHHHHhhHHHHHHHHHHHhhc------hH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGR-TRTFQLDAVPLAAGAFLCATAQ------SV  194 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~Gr-r~~l~~~~~~~~~~~~~~~~~~------~~  194 (397)
                      +..++.+.+|++....  |.+..+.-+.-++..|+.|.++|    |+|| |+.++++.+..+++.+++...+      .+
T Consensus        29 l~~yyt~v~Gls~~~v--g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~  106 (473)
T PRK10429         29 LMYYYTDVVGLSVGLV--GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQY  106 (473)
T ss_pred             HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHH
Confidence            5567777889998887  99999999999999999999999    6698 6777778888777766554322      13


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhccc-CcccchhhhhHHHHHHHHHHHHHHHHhhh----cC--CCCcchHHHHHHh
Q 015968          195 QTMIIGRVLAGIGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLP----LA--GNPLWWRTMFGLA  267 (397)
Q Consensus       195 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~----l~--~~~~~w~~~~~~~  267 (397)
                      ..+++..++.+++.........++..|+. ++++|.+..++-..+..+|..+.+.+...    +.  +...+|++..++.
T Consensus       107 ~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~  186 (473)
T PRK10429        107 VFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVL  186 (473)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            34555666777777777888888999998 57889988887556566654444433322    11  1124688877777


Q ss_pred             HHHHHHHHHHh-ccCCCC
Q 015968          268 AIPSILLALGM-GLSPES  284 (397)
Q Consensus       268 ~~~~~~~~~~~-~~~~e~  284 (397)
                      +++.++..+.. +..+|.
T Consensus       187 ~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        187 IAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             HHHHHHHHHHHHcCceec
Confidence            77665544433 335554

>PRK10504 putative transporter; Provisional

Probab=99.29  E-value=1.6e-10  Score=112.32  Aligned_cols=130  Identities=12%  Similarity=0.093  Sum_probs=105.1

Q ss_pred             hhhHHHHHH-HhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh---chHHHHHH
Q 015968          124 NGALEYLAK-DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---QSVQTMII  199 (397)
Q Consensus       124 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~  199 (397)
                      ....|++.+ .+|.+....  +++.....++..++.++.|++.||+|||+++..+.++.++..++..+.   ++.+.+.+
T Consensus       281 ~~~~~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (471)
T PRK10504        281 PFMTPVFLQIGLGFSPFHA--GLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPF  358 (471)
T ss_pred             HHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence            335565544 578887777  888888888888888999999999999999999988888776665543   34444555


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCC
Q 015968          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG  255 (397)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  255 (397)
                      ..++.|++.+..++....++.+..|+++++.+.++.++...+|..+|+.+++.+.+
T Consensus       359 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        359 VLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66778888888888888999999999999999999999999999999998887654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.28  E-value=4.7e-11  Score=111.27  Aligned_cols=153  Identities=27%  Similarity=0.322  Sum_probs=130.4

Q ss_pred             hHHHHHHHhC----CCchhhHHHHHHHHHHHHHHHHHHhhhhhhcc-cchHHHHHHhhHHHHHHHHHHHhhc--hHHHHH
Q 015968          126 ALEYLAKDLG----IAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMI  198 (397)
Q Consensus       126 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~  198 (397)
                      +.-++..+++    ++++++  .-+.+.|..---+.++++||++|| +|+|+.++.|.++++++.++.+.+.  +...++
T Consensus        44 L~~Yl~~~~~~gLg~~~~~A--~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~  121 (498)
T COG3104          44 LILYLYYQLGDGLGFDETHA--TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLY  121 (498)
T ss_pred             HHHHHHHhccccCCcChHhh--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHH
Confidence            5567777777    888877  666777766666788999999999 5999999999999999999998884  788899


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhcccCccc--chhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHH
Q 015968          199 IGRVLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (397)
Q Consensus       199 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~  276 (397)
                      ++-++.++|.|..=+....+++|.+|+++  |-..+++++++.++|++++|++.+.+.+. .||...|.+.++-..+.++
T Consensus       122 i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~-~g~~~gF~~aavGm~~gl~  200 (498)
T COG3104         122 IGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN-YGWHVGFGLAAVGMIIGLV  200 (498)
T ss_pred             HHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998754  56788899999999999999999999887 8999999888877776666


Q ss_pred             HhccC
Q 015968          277 GMGLS  281 (397)
Q Consensus       277 ~~~~~  281 (397)
                      ..+..
T Consensus       201 ~f~~~  205 (498)
T COG3104         201 IFLLG  205 (498)
T ss_pred             HHHHc
Confidence            55543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.27  E-value=2.4e-10  Score=105.19  Aligned_cols=155  Identities=17%  Similarity=0.148  Sum_probs=129.0

Q ss_pred             hhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHh-hchHHHHHH
Q 015968          121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT-AQSVQTMII  199 (397)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~  199 (397)
                      ..++++-|.+++..|++.+..  +++.-.|.++..+|..++|+++|| +.|+.+.....+.++..+...+ .++.+..++
T Consensus       229 ~~ftYi~P~L~~v~g~s~~~v--s~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~  305 (394)
T COG2814         229 ALYTYIRPFLESVAGFSVSAV--SLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALA  305 (394)
T ss_pred             hhHHhHHHHHHHccCCCHhHH--HHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            355668899999999998888  999999999999999999999999 9999988887777777665554 456666777


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhc
Q 015968          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (397)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  279 (397)
                      .-++.|+..+.........+++ ..++.+..+.+++....++|..+|..++|.+.++ .|+....++.+++.++.+++.+
T Consensus       306 ~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-~g~~~~~~~~a~l~~~a~~~~~  383 (394)
T COG2814         306 LLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA-LGYAATGWVGAALLLLALLLAL  383 (394)
T ss_pred             HHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHH
Confidence            7777888877766666667777 3356689999999999999999999999999998 9999999999888877776654


Q ss_pred             c
Q 015968          280 L  280 (397)
Q Consensus       280 ~  280 (397)
                      .
T Consensus       384 ~  384 (394)
T COG2814         384 L  384 (394)
T ss_pred             H
Confidence            3

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.27  E-value=9.5e-11  Score=106.92  Aligned_cols=178  Identities=15%  Similarity=0.082  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHH
Q 015968          104 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA  183 (397)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~  183 (397)
                      ...++..-..+.++.+ ++++....+-..++|++..+.  .++.....+..++|++++|+|.||+|.|+++.++.+++.+
T Consensus       254 i~~FLiA~~~~~DGv~-til~~~~~fg~~~~gls~~~l--ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~  330 (438)
T COG2270         254 LVLFLIARFFYIDGVN-TILAMGGVFGAADLGLSSTEL--LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSI  330 (438)
T ss_pred             hHHHHHHHHHHHhhHH-HHHHHHHHHHHHHcCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHH
Confidence            3444445555555553 333444455566999999888  7777778888999999999999999999999999999998


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHH
Q 015968          184 GAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTM  263 (397)
Q Consensus       184 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~  263 (397)
                      .++...+......+.++-.+.|.+.|+.++..-+|.++..|+++-++.+|+++.....++++||++.+.+.+....-|..
T Consensus       331 ~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g  410 (438)
T COG2270         331 AALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG  410 (438)
T ss_pred             HHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence            88877777777777788899999999999999999999999998899999999999999999999999988776778888


Q ss_pred             HHHhHHHHHHHHHHhccCCCC
Q 015968          264 FGLAAIPSILLALGMGLSPES  284 (397)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~e~  284 (397)
                      +....++.++.+++++.+|+.
T Consensus       411 ~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         411 VLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHHhhHhhEEeecCC
Confidence            877777777777777777655

>PRK15075 citrate-proton symporter; Provisional

Probab=99.27  E-value=3.5e-10  Score=108.75  Aligned_cols=132  Identities=15%  Similarity=0.032  Sum_probs=94.1

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHH-H---HhhchHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL-C---ATAQSVQTMIIGR  201 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~-~---~~~~~~~~~~~~r  201 (397)
                      ...++++.+|.+..+.  +++...+.++..++.+++|+++||+|||++++++.++.++..++ .   ...+++..+.+..
T Consensus       261 ~p~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (434)
T PRK15075        261 TPTFGKTVLHLSAADS--LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVE  338 (434)
T ss_pred             HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            3344555689988777  78888888889999999999999999999988765554332221 1   1123444444445


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHH-HHHHHHHHHHHHhhhcCCCCcch
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQL-FICVGILAALVAGLPLAGNPLWW  260 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~~w  260 (397)
                      ++.|++.+...+....++.|.+|++.|+.++++.+. +..+++.++|.+.+.+.+. .|+
T Consensus       339 ~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~-~g~  397 (434)
T PRK15075        339 LWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV-TGD  397 (434)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh-cCC
Confidence            666777766666667889999999999999998544 4445567788888887765 443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.26  E-value=4.5e-10  Score=101.12  Aligned_cols=156  Identities=21%  Similarity=0.204  Sum_probs=103.3

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  205 (397)
                      ..-.+-+++|++..+.  +.+....++..++..++.|.++||+|||+.-++..++.+++++. -..+++..++++|++.|
T Consensus        56 Y~Y~LY~~yg~~~~qI--a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgG  132 (354)
T PF05631_consen   56 YLYALYESYGFSEHQI--AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGG  132 (354)
T ss_pred             hhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHH
Confidence            4444557899999888  88888888889999999999999999999999999999988864 45588999999999999


Q ss_pred             Hhhhhhhhhhhhh-hhccc----CcccchhhhhHHH-HHHHHHHHHHHHHhhhcCCC-CcchHHHHHHhHHHHHHHHHHh
Q 015968          206 IGIGISSAIVPLY-ISEIS----PTEIRGALGSVNQ-LFICVGILAALVAGLPLAGN-PLWWRTMFGLAAIPSILLALGM  278 (397)
Q Consensus       206 ~~~~~~~~~~~~~-~~~~~----~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~-~~~w~~~~~~~~~~~~~~~~~~  278 (397)
                      ++.+..+..--++ +.|.-    |++..+.-++... ....+-.++..+++-.+.+. ..|-.+.|.....+.++..+++
T Consensus       133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I  212 (354)
T PF05631_consen  133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLI  212 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence            9999888877654 45542    2222222222222 11122223333333333332 1234667766666665555444


Q ss_pred             cc-CCCC
Q 015968          279 GL-SPES  284 (397)
Q Consensus       279 ~~-~~e~  284 (397)
                      .. .+|.
T Consensus       213 ~~~W~EN  219 (354)
T PF05631_consen  213 LKTWPEN  219 (354)
T ss_pred             Hhccccc
Confidence            32 3444

>TIGR00898 2A0119 cation transport protein

Probab=99.26  E-value=9.9e-11  Score=114.88  Aligned_cols=136  Identities=19%  Similarity=0.111  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchH--HHHHHHHHHHHHhhhhhhhhhhhhhhcccC
Q 015968          147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSV--QTMIIGRVLAGIGIGISSAIVPLYISEISP  224 (397)
Q Consensus       147 ~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~  224 (397)
                      ..+..+...++.++.+++.||+|||+++.++.++.+++.++..+.++.  +..++..++.+++.+..++....+..|.+|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            334456677888999999999999999999999988888877776543  445555567777777788888899999999


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhccCCCCh
Q 015968          225 TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESP  285 (397)
Q Consensus       225 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~  285 (397)
                      ++.|+.++|+.+....+|.+++|.+.+ +.+  .++...+++.++..++..++.+++||+.
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY-LGE--KWLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH--HHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            999999999999999999999999988 432  4567777777877777777777788874

>PRK11462 putative transporter; Provisional

Probab=99.26  E-value=1.1e-09  Score=105.77  Aligned_cols=152  Identities=16%  Similarity=0.147  Sum_probs=111.2

Q ss_pred             hhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcc----cchH-HHHHHhhHHHHHHHHHHHhhch------
Q 015968          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRT-RTFQLDAVPLAAGAFLCATAQS------  193 (397)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~Grr-~~l~~~~~~~~~~~~~~~~~~~------  193 (397)
                      .+..++.+.+|++....  |.+..+.-+.-++..|+.|.++||    +||| +.++++.+..+++.+++-..++      
T Consensus        31 ~l~~fyt~~~Gl~~~~~--g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~  108 (460)
T PRK11462         31 YMMFFYTDIFGIPAGFV--GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGK  108 (460)
T ss_pred             HHHHHHHHhhCCCHHHH--HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchH
Confidence            35667778899998877  999999999999999999999995    7875 5666777778777766554432      


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhcccC-cccchhhhhHHHHHHHHHHHHHHHHhhhcCC------CCcchHHHHHH
Q 015968          194 VQTMIIGRVLAGIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAG------NPLWWRTMFGL  266 (397)
Q Consensus       194 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~~~w~~~~~~  266 (397)
                      ...+++..++..++.........++.+|+.+ +++|.+..++-..+..+|..+++++...+..      ...+|+....+
T Consensus       109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i  188 (460)
T PRK11462        109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAV  188 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence            3445566667788877777778888999987 6889999999888888887776665433221      11368887777


Q ss_pred             hHHHHHHHHHHh
Q 015968          267 AAIPSILLALGM  278 (397)
Q Consensus       267 ~~~~~~~~~~~~  278 (397)
                      .+++.+++.++.
T Consensus       189 ~~ii~~i~~~i~  200 (460)
T PRK11462        189 LSVVAFMMLAFC  200 (460)
T ss_pred             HHHHHHHHHHHH
Confidence            776665554433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.26  E-value=6.4e-11  Score=110.72  Aligned_cols=129  Identities=17%  Similarity=0.271  Sum_probs=113.5

Q ss_pred             hHHHHHHH-hCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhch-HHHHHHHHHH
Q 015968          126 ALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS-VQTMIIGRVL  203 (397)
Q Consensus       126 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l  203 (397)
                      ..|.+.++ +|.+..+.  +++.....++..++.++.+++.||+|||+.+..+.++.+++.++..+.++ .+.+++..++
T Consensus       233 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (365)
T TIGR00900       233 LFPYVQSKYLGRGSTHY--GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFA  310 (365)
T ss_pred             HhHHHHHHHhCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Confidence            45655554 89888777  89999999999999999999999999999999888888888877777764 8888888999


Q ss_pred             HHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC
Q 015968          204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN  256 (397)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  256 (397)
                      .|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+++.+.+.
T Consensus       311 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       311 IGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887653

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.25  E-value=6e-11  Score=114.20  Aligned_cols=158  Identities=16%  Similarity=0.110  Sum_probs=103.3

Q ss_pred             hhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHH---HHHHHHHh--hchHHHHH
Q 015968          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA---AGAFLCAT--AQSVQTMI  198 (397)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~---~~~~~~~~--~~~~~~~~  198 (397)
                      .....++++..|.+..+.  ++....+.++..++.+++|+++||+|+++....+.++..   ++.+....  ..+.+...
T Consensus       272 ~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (438)
T TIGR00712       272 DWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDM  349 (438)
T ss_pred             HhHHHHHHHccCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence            334456666678888777  888888999999999999999999975432222322221   11122122  12344344


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHH-HHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHH-
Q 015968          199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG-ILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL-  276 (397)
Q Consensus       199 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~-  276 (397)
                      +..++.|++..+..........|.+|+++|+.+.|+.+....+| .+++|.+.+.+.+. .||.+.|++.+++.++..+ 
T Consensus       350 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~-~g~~~~~~~~~~~~~~~~~~  428 (438)
T TIGR00712       350 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSILAVIL  428 (438)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh-ccchHHHHHHHHHHHHHHHH
Confidence            44455555432222222345779999999999999998877776 56899999998876 6899999887766655544 


Q ss_pred             HhccCCCC
Q 015968          277 GMGLSPES  284 (397)
Q Consensus       277 ~~~~~~e~  284 (397)
                      ..+++||+
T Consensus       429 ~~~~~~~~  436 (438)
T TIGR00712       429 LIVVMIGE  436 (438)
T ss_pred             HHHHHhhc
Confidence            34445665

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.25  E-value=3.2e-10  Score=110.21  Aligned_cols=149  Identities=22%  Similarity=0.211  Sum_probs=131.3

Q ss_pred             hHHHH-HHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHH
Q 015968          126 ALEYL-AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA  204 (397)
Q Consensus       126 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  204 (397)
                      .+|.+ .+++|.+....  |++.+++.+|..+|.++.+++.+|+++++.+..+.++++++.+..+++++.+..++..++.
T Consensus       240 LlPl~a~~~l~~~a~~y--Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~  317 (524)
T PF05977_consen  240 LLPLFARDVLGGGASGY--GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLA  317 (524)
T ss_pred             hhhHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            45655 46688888777  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHH
Q 015968          205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (397)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~  277 (397)
                      |++.........+.+.+..|++.||+.++++.+....+..+|.++.|.+.+. .|-+..+.+.++..++..++
T Consensus       318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~-~g~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH-FGVRTALLIAGAALLLSALI  389 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHH
Confidence            9999888888889999999999999999999999999999999999999887 78888887776655444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR01272 gluP glucose/galactose transporter

Probab=99.24  E-value=5.7e-10  Score=102.02  Aligned_cols=145  Identities=16%  Similarity=0.111  Sum_probs=111.3

Q ss_pred             HhhchhhHHHHHH--HhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHH
Q 015968          120 LGVVNGALEYLAK--DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTM  197 (397)
Q Consensus       120 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  197 (397)
                      .+..++...++.+  .+|++..+.  ++..+.+..++.+|.++.+++.||+|+|+++.++.++.+++.++....++...+
T Consensus       157 ~~~~~w~~~yl~~~~~~g~s~~~a--~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~  234 (310)
T TIGR01272       157 VSAGSFLVNFLSDPHALGLPEDQA--AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM  234 (310)
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            3444445556653  368888888  899999999999999999999999999999988888888877666555544333


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHH
Q 015968          198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP  270 (397)
Q Consensus       198 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~  270 (397)
                       .+-++.|++.+..+|...+...+.+|++ .+.+.++. ....+|.++.|.+.|.+.+. .|.++.|++..++
T Consensus       235 -~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~-~g~~~a~~v~~~~  303 (310)
T TIGR01272       235 -WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADC-LGIQLAFALPVPC  303 (310)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHh-ccchHHHHHHHHH
Confidence             4556889999999999998888888764 45666665 45668889999988888876 6788887744433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.23  E-value=3.2e-10  Score=122.23  Aligned_cols=146  Identities=23%  Similarity=0.302  Sum_probs=122.9

Q ss_pred             hHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAEN-TVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA  204 (397)
Q Consensus       126 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  204 (397)
                      +..++.+.+|.+.. ..  +++.+...++.+++.+++|+++||+++++++.++.++.+++.++..+..+.+.++++.++.
T Consensus       255 ~~~~~~~~~g~s~~~~~--g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (1146)
T PRK08633        255 FPAYAKEVLGLDNTFQV--QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLF  332 (1146)
T ss_pred             hHHHHHHHhCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            55667788899887 66  8999999999999999999999999999999999888888888888888888888888999


Q ss_pred             HHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHH
Q 015968          205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL  273 (397)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~  273 (397)
                      |++.+...+...+++.+.+|++.||+++++.++...+|.++++.+++.+.....++...|++.+.+.++
T Consensus       333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            999998888889999999999999999999999999998888888776644324566666665554433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.22  E-value=1e-10  Score=109.91  Aligned_cols=136  Identities=19%  Similarity=0.239  Sum_probs=99.4

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccc-hHHHHH-Hhh-HHHHHHHHHHHh--hchHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-RTRTFQ-LDA-VPLAAGAFLCAT--AQSVQTMIIG  200 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-rr~~l~-~~~-~~~~~~~~~~~~--~~~~~~~~~~  200 (397)
                      ...++.+++|.+..+.  +++.+.+.++..++.++.|+++||++ +|+..+ ... ....++......  ..+...+++.
T Consensus       239 ~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (379)
T TIGR00881       239 SPLYLTQEKGFSKEKA--SWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLIC  316 (379)
T ss_pred             HHHHHHHHhCCCHHHH--HHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHH
Confidence            4455667789988877  89999999999999999999999864 333222 211 112222222222  2345555666


Q ss_pred             HHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHH
Q 015968          201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF  264 (397)
Q Consensus       201 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~  264 (397)
                      .++.|+...+..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+. .||++.|
T Consensus       317 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~f  379 (379)
T TIGR00881       317 LFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG-FGWAGAF  379 (379)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh-hcccccC
Confidence            67777766566666677889999999999999999999999999999999999887 7888754

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.22  E-value=4.7e-10  Score=97.68  Aligned_cols=176  Identities=16%  Similarity=0.063  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHH
Q 015968          103 LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLA  182 (397)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~  182 (397)
                      |..+......+...+..+ .++..-|.+++.+|++.++.  ..+...-.+|..+ .++.|.+.|++|.+.++.+|.+...
T Consensus         2 W~~l~a~~~v~~~~Gt~Y-~Fs~yS~~Lk~~l~~sq~~l--~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~   77 (250)
T PF06813_consen    2 WLSLVASIWVQLCSGTTY-TFSAYSPQLKSRLGYSQSQL--NTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGF   77 (250)
T ss_pred             hhhHHHHHHHHHhcCccc-chhhhhHHHHHHhCCCHHHH--HHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHH
Confidence            444444444444444322 34557789999999999888  8888888998876 4888999999999999999999999


Q ss_pred             HHHHHHHhh-------chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCC
Q 015968          183 AGAFLCATA-------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG  255 (397)
Q Consensus       183 ~~~~~~~~~-------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  255 (397)
                      ++..+..++       .++|.+.+..++.|.+.+...........+.||. +||++.|+.-...++++.+-..+...+..
T Consensus        78 ~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen   78 VGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             HHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence            998776653       3677777777888888776667766777789985 69999999999988887665555444443


Q ss_pred             CCcchHHHHHHhHHHHHHHHHHhccCCCC
Q 015968          256 NPLWWRTMFGLAAIPSILLALGMGLSPES  284 (397)
Q Consensus       256 ~~~~w~~~~~~~~~~~~~~~~~~~~~~e~  284 (397)
                      . ..-...+.+.....++.++..++++..
T Consensus       157 ~-~~~~fll~la~~~~~v~l~~~~~vr~~  184 (250)
T PF06813_consen  157 D-DPSSFLLFLAVLPAVVCLVAMFFVRPV  184 (250)
T ss_pred             C-ChHHHHHHHHHHHHHHHHHHhhheecc
Confidence            3 233334333333344444555554433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.21  E-value=2.3e-10  Score=110.73  Aligned_cols=161  Identities=20%  Similarity=0.201  Sum_probs=142.8

Q ss_pred             HhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccc--hHHHHHHhhHHHHHHHHHHHhhchHHHH
Q 015968          120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAFLCATAQSVQTM  197 (397)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~  197 (397)
                      ..+....++.+.++.+.+..+.  +.+.++..+...++.++.|+++|+..  ++.++.++.++.+++.+.+.++++++.+
T Consensus       314 ~~~p~~~l~~~~~~~g~~~~~a--a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l  391 (509)
T KOG2504|consen  314 FNVPFVYLPSYAKSLGLSSNDA--AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGL  391 (509)
T ss_pred             HHHHHHHHHHHHhhcCCChhhh--HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            3344447788888999999888  99999999999999999999999988  5667788888888888899999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHH
Q 015968          198 IIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (397)
Q Consensus       198 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~  277 (397)
                      +..-++.|+..|........++.|+.+.++-..+.|+...+..++.++||.+++.+.+....|...|+..++..++..++
T Consensus       392 ~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~  471 (509)
T KOG2504|consen  392 IVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL  471 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH
Confidence            99999999999999888888999999999889999999999999999999999988887667999999999988888877


Q ss_pred             hccCC
Q 015968          278 MGLSP  282 (397)
Q Consensus       278 ~~~~~  282 (397)
                      +++.+
T Consensus       472 ~~~~~  476 (509)
T KOG2504|consen  472 LLILR  476 (509)
T ss_pred             HHHhH
Confidence            76655

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.21  E-value=8.8e-10  Score=104.15  Aligned_cols=149  Identities=16%  Similarity=0.138  Sum_probs=109.0

Q ss_pred             hhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHH-hhchHHHHHHHHHH
Q 015968          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA-TAQSVQTMIIGRVL  203 (397)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~r~l  203 (397)
                      ...+++.+.+|.+..+.  +++.+...++..++.++.|++.||+|+|+.+..+.++.+++.++.. ..++.+..++..++
T Consensus       221 ~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  298 (382)
T PRK10091        221 YIKPYMMFISGFSETSM--TFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFI  298 (382)
T ss_pred             HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34567777789988877  8999999999999999999999999999999988888777775554 34555556666666


Q ss_pred             HHHhhhhhhhhhh-hhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHH
Q 015968          204 AGIGIGISSAIVP-LYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (397)
Q Consensus       204 ~G~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~  277 (397)
                      .+++.....+... ....+..+++.++.+  ..+....+|..+||.+++.+.+...+|++.+++.+++.++.+..
T Consensus       299 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~  371 (382)
T PRK10091        299 CCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS  371 (382)
T ss_pred             HHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence            6666544444333 334444444444443  34567789999999999998886578999998887666554433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.21  E-value=1.5e-10  Score=105.46  Aligned_cols=154  Identities=21%  Similarity=0.229  Sum_probs=123.0

Q ss_pred             hchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhccc--chHHHH-HHhhHHHHHHHHHHHhhc--hHHH
Q 015968          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTF-QLDAVPLAAGAFLCATAQ--SVQT  196 (397)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--Grr~~l-~~~~~~~~~~~~~~~~~~--~~~~  196 (397)
                      +......++.|..|.+..+.  ++..+.|=++...|.+++|++|||+  |||... ++..++..++.+..-+++  |++.
T Consensus       271 i~dW~p~YL~e~k~~s~~~a--~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l  348 (448)
T COG2271         271 INDWGPLYLSEVKGFSLVKA--NWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLL  348 (448)
T ss_pred             HhhhHHHHHHHhcCCCHHHH--HHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHH
Confidence            44446668888899999888  9999999999999999999999986  666555 444455555555555554  5688


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHH-HHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHH
Q 015968          197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA  275 (397)
Q Consensus       197 ~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  275 (397)
                      ..++.++.|+..-+..-.+.....|..|++--|++.|+...+..+ |.+.+....+.+.+. .||...|++..+.+++..
T Consensus       349 ~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~-~gW~g~Fi~~~~~a~l~~  427 (448)
T COG2271         349 DAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT-WGWDGGFIVLSIAALLAI  427 (448)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec-CCCcchHHHHHHHHHHHH
Confidence            888889999988777777777889999999889999999998888 888888888888777 899999988877776655


Q ss_pred             HHh
Q 015968          276 LGM  278 (397)
Q Consensus       276 ~~~  278 (397)
                      +++
T Consensus       428 lll  430 (448)
T COG2271         428 LLL  430 (448)
T ss_pred             HHH
Confidence            544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.20  E-value=4.3e-10  Score=107.31  Aligned_cols=145  Identities=13%  Similarity=0.020  Sum_probs=98.2

Q ss_pred             hhHHHHHHHh--CCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHH-HHHhhHHHHHHHHHHHhhchHHHHHHHH
Q 015968          125 GALEYLAKDL--GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT-FQLDAVPLAAGAFLCATAQSVQTMIIGR  201 (397)
Q Consensus       125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~r  201 (397)
                      ...|.+.+++  +.+..+.  +++.....++..++.+++|+++||+|+|+. ++...++.+++.++.....+....+++-
T Consensus       263 ~~~p~~l~~~~~~~s~~~~--~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (412)
T TIGR02332       263 IWTPQILQSFNQGSSNIMI--GLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGI  340 (412)
T ss_pred             HHHHHHHHhcCCCCcHHHh--HHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            3455555554  5565555  888999999999999999999999997764 4444444444333222222322222222


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHH
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS  271 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~  271 (397)
                      ++.+++.....+.......|.+|+++|++++|+.+....+|.+++|.+.+.+.+...+|++.|++.++..
T Consensus       341 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       341 IMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             HHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            2333333333344445557889999999999999999999999999999998887556999988766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.20  E-value=1.3e-09  Score=103.37  Aligned_cols=147  Identities=18%  Similarity=0.081  Sum_probs=109.3

Q ss_pred             HHHHHHhCCCchhhHHHHHHHHHH-HHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHh------hchHHHHHHH
Q 015968          128 EYLAKDLGIAENTVLQGWIVSSLL-AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT------AQSVQTMIIG  200 (397)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~  200 (397)
                      +.+.+|.|++.++.  +++..... ....++.++.|++.||+|+|+.+..+.++.++..+....      .++...++..
T Consensus       232 ~~~l~~~G~s~~~i--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       232 KLYLVDAGWPLEWI--GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             hHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            44445689998888  88887765 466677899999999999999998877665333322211      1233444455


Q ss_pred             HHHHHHhhhhhhhhhhhhhhcccCc-ccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHH
Q 015968          201 RVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (397)
Q Consensus       201 r~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~  277 (397)
                      .++.+++.+...+.....+.+..++ +.+++.++..+....+|..+||.++|.+.+. .||+..|++.+++.++..+.
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~-~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR-FGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHH
Confidence            5566677777777777777777766 7789999999999999999999999999876 68999998877766665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.20  E-value=2e-09  Score=102.15  Aligned_cols=147  Identities=12%  Similarity=0.030  Sum_probs=113.8

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAG  205 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G  205 (397)
                      ..|.+.+++|.+..+.  +++...+.++..++.++.+++.||.+++..+....+..++..++....++.+.+.+..++.|
T Consensus       239 ~~p~~~~~~g~s~~~~--g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G  316 (394)
T PRK10213        239 IRPVYMNLAGFGVDGL--TLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWG  316 (394)
T ss_pred             HHHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4577778889998777  88899999999999999999999965444344333334444455455667788888889999


Q ss_pred             HhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHH
Q 015968          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (397)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~  276 (397)
                      ++.+...+....++.+..| +++++..++......+|..+|+.++|.+.+. .|++..++..+++.++..+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~-~g~~~~~~~~~~~~~~~~~  385 (394)
T PRK10213        317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN-IGLTSPLMLSGTLMLLTAL  385 (394)
T ss_pred             HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhhHHHHHHHHHHHHHH
Confidence            9998888888888888887 4467777888888899999999999999887 7888888777666544443

>PRK10054 putative transporter; Provisional

Probab=99.19  E-value=3.1e-10  Score=107.66  Aligned_cols=141  Identities=13%  Similarity=0.058  Sum_probs=110.8

Q ss_pred             HhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh-chHHHHHHHHHHHHHhhhhh
Q 015968          133 DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTMIIGRVLAGIGIGIS  211 (397)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~  211 (397)
                      +.+.+....  +++...+.+.....+++.|++.||+++|+.+..+.++.+++.++..+. ++.+.+++..++.|++.+..
T Consensus       238 ~~~~~~~~~--g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  315 (395)
T PRK10054        238 DSDFAEKVV--AVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIY  315 (395)
T ss_pred             ccchHHHHH--HHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Confidence            344444444  777777777777778888999999999999999988888888777664 56777777888999998888


Q ss_pred             hhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHH
Q 015968          212 SAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (397)
Q Consensus       212 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~  277 (397)
                      .+....++.+..|++.|+.+.+..+ ...+|..+||.++|.+.+. .|....|++.+...++..++
T Consensus       316 ~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~-~g~~~~~~~~~~~~~~~~~~  379 (395)
T PRK10054        316 APGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT-LPPWSLFVILALAIVAAWLL  379 (395)
T ss_pred             HhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH-cChhhHHHHHHHHHHHHHHH
Confidence            8888889999999999999888654 5568999999999999887 68888887765555444433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.18  E-value=1.3e-09  Score=103.46  Aligned_cols=161  Identities=17%  Similarity=0.107  Sum_probs=116.0

Q ss_pred             hchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh---chHH---
Q 015968          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---QSVQ---  195 (397)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~---~~~~---  195 (397)
                      .+......+-++.|++..+.  .+......+...+..+++.++.||+|||+.++++..+..+..+++...   .+..   
T Consensus       288 ai~~Yst~i~~~aG~~~~~a--~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~  365 (485)
T KOG0569|consen  288 AIFFYSTSIFKTAGFTPEEA--QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSW  365 (485)
T ss_pred             eeHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            44456677888899998888  788888888899999999999999999999999999999888776543   1111   


Q ss_pred             ---HHHHHHHHHHHhhh-hhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHH
Q 015968          196 ---TMIIGRVLAGIGIG-ISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS  271 (397)
Q Consensus       196 ---~~~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~  271 (397)
                         ..+++.++..++.+ +.-|+..-+.+|++|++.|+.++++..+...++.++-.+.-..+.+. .|- +.|++..+.+
T Consensus       366 ~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~-~g~-~~filF~i~~  443 (485)
T KOG0569|consen  366 LSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV-IGP-YVFILFVIPL  443 (485)
T ss_pred             HHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc-hhhHHHHHHH
Confidence               12333344333332 23456667889999999999999998888888777665655555444 332 6666666666


Q ss_pred             HHHHH-HhccCCCChH
Q 015968          272 ILLAL-GMGLSPESPR  286 (397)
Q Consensus       272 ~~~~~-~~~~~~e~~~  286 (397)
                      ++..+ ++..+|||..
T Consensus       444 ~~~~i~~~~~lPETkg  459 (485)
T KOG0569|consen  444 AIFLIYLYRYLPETKG  459 (485)
T ss_pred             HHHHHHHHHhCcccCC
Confidence            55544 5566899953

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.18  E-value=1.4e-09  Score=100.63  Aligned_cols=264  Identities=15%  Similarity=0.060  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHHHHHhHhhchhhHHHHHHH-hCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHH
Q 015968          105 FVGVACLGAILFGYHLGVVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA  183 (397)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~  183 (397)
                      ..+.+|+..++..+ ...-....|++.+. .|++.++.. .-+.-...-.+.+..++...+.|.+|.|++++++.+...+
T Consensus         6 ~~~llc~~gf~~~f-rPsEPfl~~yL~~~~kn~T~~qv~-~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~   83 (412)
T PF01770_consen    6 ITLLLCLFGFFKEF-RPSEPFLTPYLTGPDKNFTEEQVN-NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYII   83 (412)
T ss_pred             HHHHHHHHHHHHhc-CCCCccchHHHcCCccCCCHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            34445555555544 33334566777775 788887763 4555566667778888999999999999999999999999


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC-CcchHH
Q 015968          184 GAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-PLWWRT  262 (397)
Q Consensus       184 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~w~~  262 (397)
                      ..++..+.++...+-+..++.|++.+. ..+..+|+--..++++-.++.+...+...+|..++.++|-.+... ...++.
T Consensus        84 t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~  162 (412)
T PF01770_consen   84 TWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQ  162 (412)
T ss_pred             HHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            999999999999999999999999755 566678888888887778888888888888888887777665542 356777


Q ss_pred             HHHHhHHHHHHHHHHhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHH--HHhhcCC-CCCCccchhhhhcc--
Q 015968          263 MFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLD--LTNAGQG-SAEPEAGWFDLFSS--  337 (397)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~--  337 (397)
                      ..++......+.++..+++|..++...-+++..+... ..+...++..+....+  ..+..+. ..+.+..++.++++  
T Consensus       163 L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  241 (412)
T PF01770_consen  163 LNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFK  241 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHH
Confidence            7777776666777777778776553221111111000 0000000000000000  0000000 11111122233332  


Q ss_pred             -chhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHc
Q 015968          338 -RYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSV  372 (397)
Q Consensus       338 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (397)
                       -+..+.++.+.+++....+|++-+.+|...+.++.
T Consensus       242 ~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v  277 (412)
T PF01770_consen  242 SCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTV  277 (412)
T ss_pred             HHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence             34556667777888888888898999988888877

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.17  E-value=6.1e-10  Score=107.14  Aligned_cols=112  Identities=19%  Similarity=0.230  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh-chHHHHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTMIIGRVLAGIGIGISSAIVPLYISEI  222 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~  222 (397)
                      +++..+..++..++.+++++++||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+...++++|.
T Consensus       260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (437)
T TIGR00792       260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADT  339 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            677788889999999999999999999999999988888887776665 4566777777888999988888888898888


Q ss_pred             cC-------cccchhhhhHHHHHHHHHHHHHHHHhhhcCC
Q 015968          223 SP-------TEIRGALGSVNQLFICVGILAALVAGLPLAG  255 (397)
Q Consensus       223 ~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  255 (397)
                      .+       ++.+|...++++....+|..+++.+.+.+.+
T Consensus       340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65       4456899999999999999999998887754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.17  E-value=1.7e-10  Score=102.86  Aligned_cols=131  Identities=16%  Similarity=0.144  Sum_probs=99.1

Q ss_pred             HHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhh
Q 015968          152 AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGAL  231 (397)
Q Consensus       152 ~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  231 (397)
                      +.-..|.++.+++.||+|||+.+-..+++++++.++...+.+--...+.-|..-++..+.+.+.+.|..|.+|.+.|+++
T Consensus       392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatg  471 (528)
T KOG0253|consen  392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG  471 (528)
T ss_pred             HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence            44667889999999999999999999999999998877765444444444444555566677788999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhccCCCCh
Q 015968          232 GSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESP  285 (397)
Q Consensus       232 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~  285 (397)
                      .|.-.....+|+++.|+++... +.  .-.....+.+.+.++..+..+++|-.+
T Consensus       472 vGtcSsmaRIggI~~p~iA~~~-e~--s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  472 VGTCSSMARIGGIFSPVIAMRA-EL--STSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhhhhhHHhhhhhhhhHHHHHh-cc--ceeehHHHHHHHHHHHHHHheeeeecc
Confidence            9999999999999999998333 22  222334455666666667677776443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.16  E-value=3e-09  Score=101.34  Aligned_cols=143  Identities=13%  Similarity=0.092  Sum_probs=109.3

Q ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh-----chHHHHHHHHH
Q 015968          128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----QSVQTMIIGRV  202 (397)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~  202 (397)
                      .++.+++|.+..+.  ++......++..++.++.|+++||+|+|+.+.++.++.+++.++..+.     .+++.+++..+
T Consensus       240 ~~~~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK15402        240 VILISGEQLSSYEY--GLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS  317 (406)
T ss_pred             HHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            34567789988777  787777778889999999999999999999988888777776665543     35666777888


Q ss_pred             HHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHH
Q 015968          203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL  274 (397)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~  274 (397)
                      +.|++.+...+......... ++++||+..+.++....+|..+|+.+++.+.+. .+|....+..++..++.
T Consensus       318 ~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        318 LYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG-GGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC-CchHHHHHHHHHHHHHH
Confidence            89999888776665554433 447899999999999999999999999998776 55555444444444443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.16  E-value=1.1e-09  Score=106.36  Aligned_cols=153  Identities=19%  Similarity=0.095  Sum_probs=104.2

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHH--------HHhhHHH--HHHHHHHHh-hchH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTF--------QLDAVPL--AAGAFLCAT-AQSV  194 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l--------~~~~~~~--~~~~~~~~~-~~~~  194 (397)
                      ...++.+.+|.+..+.  +++.++..++..++.++.|+++||+++|+..        ..+....  ++..+.... ..+.
T Consensus       284 lp~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (465)
T TIGR00894       284 LPTFISWVLRVSGKEN--GLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAF  361 (465)
T ss_pred             HHHHHHHHhCcChHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            4456677789988887  9999999999999999999999998754221        1111111  111111122 2344


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCC--cchHHHHHHhHHHHH
Q 015968          195 QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP--LWWRTMFGLAAIPSI  272 (397)
Q Consensus       195 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~~w~~~~~~~~~~~~  272 (397)
                      ...+++-.+.+.+.+...+.......|..|+ .+|.+.++.+....+|+.++|.+.+.+.+..  .+|...|++.++..+
T Consensus       362 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~  440 (465)
T TIGR00894       362 YLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNI  440 (465)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHH
Confidence            4444444555555555555555555677765 7899999999999999999999998877542  358999988888777


Q ss_pred             HHHHHhccC
Q 015968          273 LLALGMGLS  281 (397)
Q Consensus       273 ~~~~~~~~~  281 (397)
                      +..++..++
T Consensus       441 i~~i~~~~~  449 (465)
T TIGR00894       441 LCVIFYLIF  449 (465)
T ss_pred             HHHHHeeee
Confidence            776665544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.15  E-value=1.1e-09  Score=117.81  Aligned_cols=146  Identities=14%  Similarity=0.064  Sum_probs=117.8

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh--------------
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--------------  191 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~--------------  191 (397)
                      ...++.+.+|.+....  +++.+.+.++.+++.++.|+++++.++++.+..+.++.+++.+..++.              
T Consensus       248 ~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  325 (1140)
T PRK06814        248 LPLLAKETLGGDENVA--TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSI  325 (1140)
T ss_pred             hHHHHHHHcCCchHHH--HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccch
Confidence            4556667789988777  999999999999999999999998887776666666665555444432              


Q ss_pred             ------chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHH
Q 015968          192 ------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFG  265 (397)
Q Consensus       192 ------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~  265 (397)
                            .+.+.+++..++.|++.+...+...+++.+.+|++.||+++|+.++...+|..+++++.+.+.....++.+.++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~  405 (1140)
T PRK06814        326 LVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIIL  405 (1140)
T ss_pred             hhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence                  66777888889999999999988999999999999999999999999999999999998887644356777776


Q ss_pred             HhHHHHHH
Q 015968          266 LAAIPSIL  273 (397)
Q Consensus       266 ~~~~~~~~  273 (397)
                      +.+++.++
T Consensus       406 ~~~~~~~~  413 (1140)
T PRK06814        406 FIALANLI  413 (1140)
T ss_pred             HHHHHHHH
Confidence            65554433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.15  E-value=5.1e-11  Score=102.47  Aligned_cols=154  Identities=18%  Similarity=0.083  Sum_probs=120.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcc-cchHHHHHHh
Q 015968           99 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLD  177 (397)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~  177 (397)
                      ..+++..+..+|+..+..++.+-.......++..+.+++.++.  .++.+.|..-..+.++++|++.|| +|-|..-++-
T Consensus        39 l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf--tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~  116 (459)
T KOG4686|consen   39 LGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF--TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIIL  116 (459)
T ss_pred             hhhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeee--eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHH
Confidence            3455666677777777666666655556667777778877777  788999999999999999999995 6877766666


Q ss_pred             hHHHHHHHHHHH---hhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcC
Q 015968          178 AVPLAAGAFLCA---TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA  254 (397)
Q Consensus       178 ~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  254 (397)
                      .+...++.++++   ..+.+|++.++||+.|+|.-..-..-..|..-||..|+.+.++|+......+|+.+-..+.+++.
T Consensus       117 ~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly  196 (459)
T KOG4686|consen  117 CIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLY  196 (459)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHH
Confidence            666667776655   35789999999999999976666666789999999999999999999999999877555554443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.12  E-value=9.3e-10  Score=100.47  Aligned_cols=164  Identities=19%  Similarity=0.081  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHH
Q 015968          106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA  185 (397)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~  185 (397)
                      +.+.++..|-......  ..+..++.++|+++..+.  +.+...+.+...+..+++|+++||+|.++++.+....++++.
T Consensus       223 lsllY~~tFG~Fvgfs--~~l~~~~~~~fg~~~~~A--g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~  298 (417)
T COG2223         223 LSLLYFATFGGFVGFS--AYLPMYLVTQFGLSPVTA--GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAA  298 (417)
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHhcCCChhhH--HHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHH
Confidence            3334444444333222  335567889999999888  899999999999999999999999999999999999888888


Q ss_pred             HHHHhh-------chHHH----HHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcC
Q 015968          186 FLCATA-------QSVQT----MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA  254 (397)
Q Consensus       186 ~~~~~~-------~~~~~----~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  254 (397)
                      .+.++.       .+...    ++...++.|+|.|.+    ..++..+|++ +-|...|+..+...+|+.+-|..-+...
T Consensus       299 ~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv----fk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~  373 (417)
T COG2223         299 ALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV----FKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSL  373 (417)
T ss_pred             HHHHccccccccCcchHHHHHHHHHHHHHhccCcchh----eeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHH
Confidence            777665       23333    444455566666554    4555566654 5799999999999999988888888777


Q ss_pred             CCCcchHHHHHHhHHHHHHHHHHh
Q 015968          255 GNPLWWRTMFGLAAIPSILLALGM  278 (397)
Q Consensus       255 ~~~~~w~~~~~~~~~~~~~~~~~~  278 (397)
                      +....+...|++.....+++.+..
T Consensus       374 ~~tg~~~~~f~~~~~~~~~a~v~~  397 (417)
T COG2223         374 DLTGSYTGAFMLLLAFYLVALVLT  397 (417)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHH
Confidence            765669999998888877776654

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.12  E-value=1.1e-08  Score=96.53  Aligned_cols=136  Identities=18%  Similarity=0.297  Sum_probs=101.8

Q ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh-----chHHHHHHHH
Q 015968          127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----QSVQTMIIGR  201 (397)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~r  201 (397)
                      ...+.+++|.+..+.  +++.+...++..++.++.|++.||+|+|+.+..+.++..++.++....     ++...+++..
T Consensus       230 ~~~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (385)
T TIGR00710       230 PFVYIDIMGVSPSVF--GLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPM  307 (385)
T ss_pred             hHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            335566889988777  899999999999999999999999999999988887777776655543     2344555567


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHH-HHHHHHHHHhhhcCCCCcchHHHHHHh
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFIC-VGILAALVAGLPLAGNPLWWRTMFGLA  267 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~~~~~~w~~~~~~~  267 (397)
                      ++.|++.+...+....+..|.+| ++|+++.++.+.... +|.+.+++++ .+.+. .+|...++..
T Consensus       308 ~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~-~~~~~~~~~~  371 (385)
T TIGR00710       308 MFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGN-TAWPMSLSCL  371 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hcccc-ChHHHHHHHH
Confidence            78899888888888888889887 568999998876654 5666777665 43332 4555544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.11  E-value=4.7e-09  Score=99.91  Aligned_cols=146  Identities=18%  Similarity=0.225  Sum_probs=103.7

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHH-HHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHH---Hhh-chHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLL-AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---ATA-QSVQTMIIG  200 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~---~~~-~~~~~~~~~  200 (397)
                      ..+.+.+++|++..+.  +++.+... ++..++.+++|++.||+|+|+.+.++.++.++..+..   ++. ++.+.+++.
T Consensus       232 ~~~~l~~~~G~~~~~~--g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  309 (402)
T PRK11902        232 STTFLIRGAGFSAGEV--GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALA  309 (402)
T ss_pred             HHHHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            3456777889998777  88876554 4688999999999999999998877776666554332   343 455555554


Q ss_pred             H----HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHH
Q 015968          201 R----VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLAL  276 (397)
Q Consensus       201 r----~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~  276 (397)
                      -    ++.|++.+...+....++.+.+|.+.+    +.++....+|.++++.++|.+.+. .||++.|.+.++++++.++
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~-~G~~~~f~~~~~~~~~~~~  384 (402)
T PRK11902        310 IGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEA-YGWPGFYLMTVVIALPGLA  384 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHH
Confidence            4    345666677777777888888776543    444445566666556678888777 8999999998888877665


Q ss_pred             Hh
Q 015968          277 GM  278 (397)
Q Consensus       277 ~~  278 (397)
                      +.
T Consensus       385 ~~  386 (402)
T PRK11902        385 LL  386 (402)
T ss_pred             HH
Confidence            54

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.09  E-value=7.6e-09  Score=97.01  Aligned_cols=150  Identities=17%  Similarity=0.116  Sum_probs=100.2

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccch---HHHHHH-hhHHHHHHHHHHHhhchHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR---TRTFQL-DAVPLAAGAFLCATAQSVQTMIIGR  201 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr---r~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~r  201 (397)
                      ..|.+.++.|.+.. .  +....+..+...++   .++++||..|   |+.... ..++.++...+.++..+....+++-
T Consensus       214 wlp~~L~~~g~s~~-~--~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  287 (368)
T TIGR00903       214 WLEAALRPAGLEDI-A--GDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFI  287 (368)
T ss_pred             HHHHHHHHCCCChH-H--HHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence            34444466777754 3  56666655555555   4667776654   444332 3444444444445555554555555


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhccC
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS  281 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~  281 (397)
                      ++.|++....++...++.+|.+|++.|+++.|+.+....+|++++|++.+.+..   +-+..|.+.+++.++..+..++.
T Consensus       288 ~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~---~~~~~f~~~~~~~~i~~~~~~~~  364 (368)
T TIGR00903       288 GIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS---SAEAYFTFLAILITIAFAIALLL  364 (368)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhC
Confidence            667777777777788899999999999999999999999999888888876652   56777777777776666555444


Q ss_pred             CCC
Q 015968          282 PES  284 (397)
Q Consensus       282 ~e~  284 (397)
                      +++
T Consensus       365 ~~~  367 (368)
T TIGR00903       365 PND  367 (368)
T ss_pred             CCC
Confidence            443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00896 CynX cyanate transporter

Probab=99.08  E-value=3.3e-09  Score=99.21  Aligned_cols=133  Identities=15%  Similarity=0.031  Sum_probs=101.9

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhccc-chHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA  204 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  204 (397)
                      ..|.+.++.|.+..+.  +++.+.+.++..++.++.|+++||+ +||+.+.++.++.+++.++..+..+..... .-++.
T Consensus       219 ~lp~~~~~~g~~~~~~--g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~  295 (355)
T TIGR00896       219 WLPAILISHGASAATA--GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVL  295 (355)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHH
Confidence            4565556789888777  8999999999999999999999999 567777777777777776666654433222 34678


Q ss_pred             HHhhhhhhhhhhhhhhcccC-cccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchH
Q 015968          205 GIGIGISSAIVPLYISEISP-TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR  261 (397)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  261 (397)
                      |++.+..++.....+.+..+ +++++...++.+....+|..++|.+.+.+.+...+|.
T Consensus       296 g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       296 GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            99998888887777766555 4556888898888888899999999999887644454

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.07  E-value=2.6e-09  Score=99.39  Aligned_cols=155  Identities=19%  Similarity=0.209  Sum_probs=91.9

Q ss_pred             Hhhchh-hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHH--HH-HHHHhh----
Q 015968          120 LGVVNG-ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA--GA-FLCATA----  191 (397)
Q Consensus       120 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~--~~-~~~~~~----  191 (397)
                      .++..+ ....+.++.|++.++.  |.+.++..+...+.+|+.|.++||+|.||-++....+..+  +. +...+.    
T Consensus        23 ~gi~~pF~~iWL~~~~GLs~~~i--G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~  100 (412)
T PF01306_consen   23 WGIFLPFFPIWLTQVAGLSGTEI--GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQ  100 (412)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHccccCCCHHHH--HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334 4445666799999999  9999999999999999999999999977665544332221  22 211221    


Q ss_pred             chHH-HHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHH
Q 015968          192 QSVQ-TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP  270 (397)
Q Consensus       192 ~~~~-~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~  270 (397)
                      .|.+ ..+++-+..|++..+..++.-+++.++.  +..+.-.|-.-+++.+|.+++..++|.+.+  .+-...||+..+.
T Consensus       101 ~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~--i~p~~~fwi~s~~  176 (412)
T PF01306_consen  101 SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN--INPNIIFWIASAA  176 (412)
T ss_dssp             TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee--eCccHHHHHHHHH
Confidence            2322 2222223334433344444444443332  223666777888899999999999998865  3456778876665


Q ss_pred             HHHHHHHhcc
Q 015968          271 SILLALGMGL  280 (397)
Q Consensus       271 ~~~~~~~~~~  280 (397)
                      +++..++.++
T Consensus       177 ~~il~lll~~  186 (412)
T PF01306_consen  177 AIILLLLLLL  186 (412)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHHH
Confidence            5554444333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.07  E-value=3.9e-09  Score=100.38  Aligned_cols=150  Identities=13%  Similarity=0.110  Sum_probs=110.8

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhc-ccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-KFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA  204 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  204 (397)
                      ..|.+.++.+.+..+.  +++.+...++...+..+.+++.| |++.++.+..+.++.+++.++.++.++++.+++..++.
T Consensus       230 ~~p~~~~~~~~~~~~~--g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  307 (400)
T PRK11646        230 MLPIMVNDIAGSPSAV--KWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLF  307 (400)
T ss_pred             hhhhhHHhhcCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4555545544455555  78777777666655555566655 56767777788888888887778888888777778888


Q ss_pred             HHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCc--c-hHHHHHHhHHHHHHHHHH
Q 015968          205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL--W-WRTMFGLAAIPSILLALG  277 (397)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~-w~~~~~~~~~~~~~~~~~  277 (397)
                      |++.+...+...+++.+..|+++||+++++.+....+|..+||.++|.+.+...  + ....+++.+++.++..+.
T Consensus       308 ~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        308 YIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            888888888888999999999999999999999999999999999999876521  2 234444445555444443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.07  E-value=4.8e-09  Score=102.36  Aligned_cols=129  Identities=15%  Similarity=0.136  Sum_probs=108.6

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHh----hchHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT----AQSVQTMIIGR  201 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~r  201 (397)
                      ...++++.+|.+..+.  +++.....++..++.++.|++.||+|||+++.++.++.+++..+..+    ..+++.++...
T Consensus       278 ~p~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (485)
T TIGR00711       278 LPLYLQQVLGYTALQA--GLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQ  355 (485)
T ss_pred             HHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence            3345566689988888  89999999999999999999999999999999999888888877662    23566677778


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN  256 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  256 (397)
                      ++.|++.+...+.......+..|+++|+.+.++.+....+|..+|+.+.+.+.++
T Consensus       356 ~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       356 FIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999888877777778889999999999999999999999999988877543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.06  E-value=1.6e-08  Score=95.43  Aligned_cols=156  Identities=19%  Similarity=0.248  Sum_probs=118.2

Q ss_pred             hHHHHHHHhC-CCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh-chHHHHHHH---
Q 015968          126 ALEYLAKDLG-IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-QSVQTMIIG---  200 (397)
Q Consensus       126 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~---  200 (397)
                      ..+...++.| .+....  +.+.++..++-++.-.+.+++..|+|.|+++.++.+.+++=..+.+.. ++.+...+.   
T Consensus       229 f~~~yl~~~gg~~~~~~--g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l  306 (400)
T PF03825_consen  229 FFSIYLQELGGYSGSTI--GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLL  306 (400)
T ss_pred             HHHHHHHHcccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            4454556666 666555  667777777788888899999999999999999999999988888776 555444333   


Q ss_pred             -HHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHH-HHHHHHHHHHHhhhcCCCCcc------hHHHHHHhHHHHH
Q 015968          201 -RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLF-ICVGILAALVAGLPLAGNPLW------WRTMFGLAAIPSI  272 (397)
Q Consensus       201 -r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~l~~~~~~------w~~~~~~~~~~~~  272 (397)
                       ..++|+..+..+.....++.+..|++.|+++.++++.. .++|..+|.+++|.+.+. .|      |...+.+.+++.+
T Consensus       307 ~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~-~g~~~~~~~~~~~~v~a~~~~  385 (400)
T PF03825_consen  307 GQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA-FGARGMFDWSAVFLVFAVMAL  385 (400)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hcchhhhhHHHHHHHHHHHHH
Confidence             35699999999999999999999999999999998765 689999999999999875 33      4455555555554


Q ss_pred             HHHH-HhccCCCC
Q 015968          273 LLAL-GMGLSPES  284 (397)
Q Consensus       273 ~~~~-~~~~~~e~  284 (397)
                      +..+ ..++++|+
T Consensus       386 ~~~~~f~~~fk~~  398 (400)
T PF03825_consen  386 VILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHhhccCC
Confidence            4433 33344443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.05  E-value=4e-09  Score=90.97  Aligned_cols=150  Identities=14%  Similarity=0.093  Sum_probs=107.6

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHH-HHHHhhchHHHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA-FLCATAQSVQTMIIGRVLA  204 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~r~l~  204 (397)
                      ....+++.||++....  +-+.+......++.+++.|.++||+|++.+.+.+..+..+.. ....++  .+.=.+...+.
T Consensus       287 g~~fF~~rfGlS~~~a--~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~l  362 (459)
T KOG4686|consen  287 GPMFFQKRFGLSAVSA--GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFL  362 (459)
T ss_pred             hHHHHHHhhCCChhhc--cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHH
Confidence            4557889999999888  888888888889999999999999999988877765554433 332222  12223344567


Q ss_pred             HHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHH---HHHHhHHHHHHHHHHhc
Q 015968          205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRT---MFGLAAIPSILLALGMG  279 (397)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~---~~~~~~~~~~~~~~~~~  279 (397)
                      |+.....-......++-..|.++.|++.|..+...++|-.+.|++++.+.+...++-+   .|.+.+.+++....+.+
T Consensus       363 GLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~  440 (459)
T KOG4686|consen  363 GLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILF  440 (459)
T ss_pred             hhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence            7776555555567778888888899999999999999999999999999887444433   33344444444443333

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.04  E-value=9.7e-10  Score=102.25  Aligned_cols=140  Identities=14%  Similarity=0.073  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 015968          143 QGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEI  222 (397)
Q Consensus       143 ~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~  222 (397)
                      .|++.++..+.-++...+..++.+|+|.|+.++++.+++++=.++++++++.+.+.+.+.+.|+-.+.......-|+++.
T Consensus       261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~  340 (412)
T PF01306_consen  261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH  340 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccchhhhhH-HHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHh-ccCCC
Q 015968          223 SPTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM-GLSPE  283 (397)
Q Consensus       223 ~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e  283 (397)
                      +|++..++...+ ++....+|.++.+.++|.+.++ .|.+..|++.+.+.+...++. +.+++
T Consensus       341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~-~G~~~tylimg~iv~~~~li~~f~l~~  402 (412)
T PF01306_consen  341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR-IGFQHTYLIMGLIVLPFTLISAFTLKK  402 (412)
T ss_dssp             S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh-cCcHHHHHHHHHHHHHHHHHheeeecC
Confidence            999887777766 4677889999999999999887 899999988887776655544 33433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10133 L-fucose transporter; Provisional

Probab=99.04  E-value=8.2e-09  Score=99.21  Aligned_cols=146  Identities=13%  Similarity=0.006  Sum_probs=111.7

Q ss_pred             hHHHH-HHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHH
Q 015968          126 ALEYL-AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA  204 (397)
Q Consensus       126 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  204 (397)
                      ..+++ ++.+|.+..+.  ++....+.++..++.++.|++.||+|+|+++..+.++.+++.++..+.++.+ .++..++.
T Consensus       281 ~~~~l~~~~~g~s~~~a--g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~  357 (438)
T PRK10133        281 LIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLC  357 (438)
T ss_pred             HHHHHhhhcCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHH
Confidence            44454 45689998888  9999999999999999999999999999999988888777776666665543 34566789


Q ss_pred             HHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHHhHHHHHHHHHH
Q 015968          205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLAAIPSILLALG  277 (397)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-w~~~~~~~~~~~~~~~~~  277 (397)
                      |++.+..+|...+...+.++++ .+.+.++..+. .+|..++|.+.+.+.+. .| -+..|++..+..+..++.
T Consensus       358 glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~~-~~g~~~~~~i~G~l~~~-~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        358 SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMT-IIGGGIVTPVMGFVSDA-AGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             HHHHHHHHHHHHHHHHcccchh-hccchhHHhHH-hccchHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988754 56777777643 45677777777777765 55 778887655555444443

>PRK09848 glucuronide transporter; Provisional

Probab=99.03  E-value=4e-08  Score=94.93  Aligned_cols=126  Identities=16%  Similarity=0.253  Sum_probs=85.0

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhccc----chHHHH-HHhhHHHHHHHHHH-Hhh----c--h
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF----GRTRTF-QLDAVPLAAGAFLC-ATA----Q--S  193 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~----Grr~~l-~~~~~~~~~~~~~~-~~~----~--~  193 (397)
                      +..++.+.+|++..+.  |.+.....+..++..+++|+++||.    |||+.+ +++.+...+..++. ...    .  .
T Consensus        31 l~~y~~~~~gl~~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (448)
T PRK09848         31 LLSYYTDVAGVGAAAA--GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSK  108 (448)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchH
Confidence            4567888889998887  9999999999999999999999986    777644 55655555444432 211    1  2


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhcccCc-ccchhhhhHHHH-----HHHHHHHHHHHHhhhc
Q 015968          194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQL-----FICVGILAALVAGLPL  253 (397)
Q Consensus       194 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-----~~~~g~~~~~~~~~~l  253 (397)
                      .+.+++..++.+++.+...+...++..++..+ ++|....++-..     +..+|..++|++++..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848        109 VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            23344455677887777777767777776644 567766554433     2345566677776543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.03  E-value=1.6e-07  Score=90.61  Aligned_cols=227  Identities=16%  Similarity=0.123  Sum_probs=137.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHH-hhHHHHHHHHHHHhh--chHHHHHHHHHHHHHhhhhhhhhhhhh
Q 015968          142 LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL-DAVPLAAGAFLCATA--QSVQTMIIGRVLAGIGIGISSAIVPLY  218 (397)
Q Consensus       142 ~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~-~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~  218 (397)
                      ..++..++..+..++..|+.|.++|+-|+||.++. ..++..+++++..+.  .+++...+..++.-++.+.......++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677888888899999999999999997665544 445555566666653  345555555566667777888888899


Q ss_pred             hhcccCcccc--------------------------hhhhhHHHHHHHHHHHHHHHHhhhcCCC-------CcchHHHHH
Q 015968          219 ISEISPTEIR--------------------------GALGSVNQLFICVGILAALVAGLPLAGN-------PLWWRTMFG  265 (397)
Q Consensus       219 ~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------~~~w~~~~~  265 (397)
                      +.|+.+++.+                          ++..+.-...+.+|+++.-++.-.+...       ...-|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999999888                          8888887777778877766655443211       133588888


Q ss_pred             HhHHHHHHHHH-HhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhHHHH
Q 015968          266 LAAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVS  344 (397)
Q Consensus       266 ~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (397)
                      +.++.-++..+ ..+++||.|+....+..........+++                       ..+++++.|.+.....+
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l-----------------------~~t~k~~~~~~~~~~fL  287 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRL-----------------------WRTFKEIRKLRQLFLFL  287 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHH-----------------------HHHHHHHHhChHHHHHH
Confidence            88877755554 4556777754210111111111111111                       11233333333333333


Q ss_pred             HHHHHHHHHHhhhhHHHHHhHHHHHH-HcCCChh--HHHHHHHHHHHHHhhhhc
Q 015968          345 VGAALFLFQQLAGINAVVYYSTSVFR-SVGIESD--VAASALVGAANVFGNYSI  395 (397)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~--~~~~~~~~~~~~~g~~~~  395 (397)
                      ++.+    ...-+++.+......+.. ++|++..  .....+..+..++|+++.
T Consensus       288 ia~~----l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~  337 (477)
T PF11700_consen  288 IAYF----LYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLF  337 (477)
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3222    222345666666666665 5799876  444555666667776654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.02  E-value=1.9e-08  Score=95.40  Aligned_cols=141  Identities=15%  Similarity=0.048  Sum_probs=108.2

Q ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 015968          127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGI  206 (397)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  206 (397)
                      .+++++.+|.+..+.  |++.+...++..++.++.+++.||+++|+++..+. +.++..++.++.++++.+++..++.|+
T Consensus       229 ~~~~~~~lg~s~~~~--G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~  305 (393)
T PRK11195        229 LAWAPVALGITLNQP--AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGA  305 (393)
T ss_pred             HHHHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            345677789988887  99999999999999999999999999998887775 344444555666777777777788999


Q ss_pred             hhhhhhhhhhhhhhcccCccc-chhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHH
Q 015968          207 GIGISSAIVPLYISEISPTEI-RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP  270 (397)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~  270 (397)
                      +.+...+...+.+.+..|++. +|++.++.+....+|..++..+.+.+......+...|...+.+
T Consensus       306 ~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (393)
T PRK11195        306 LGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLL  370 (393)
T ss_pred             hhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            988888778888888766554 6999999999999999999888886644323344444434444

>TIGR01272 gluP glucose/galactose transporter

Probab=99.02  E-value=7.8e-09  Score=94.54  Aligned_cols=92  Identities=20%  Similarity=0.138  Sum_probs=77.3

Q ss_pred             HhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCC-----------
Q 015968          189 ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP-----------  257 (397)
Q Consensus       189 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----------  257 (397)
                      +...+++.++++.++.|.|.+...+..+.++++..+++++.+.+++.+.+..+|.+++|++++.+....           
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            455789999999999999999999999999999999998999999999999999999999999776321           


Q ss_pred             ----cchHHHHHHhHHHHHHHHHHhcc
Q 015968          258 ----LWWRTMFGLAAIPSILLALGMGL  280 (397)
Q Consensus       258 ----~~w~~~~~~~~~~~~~~~~~~~~  280 (397)
                          ..|++.|++.+++.++..+.+.+
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~  111 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAF  111 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                36999998776665554444433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09848 glucuronide transporter; Provisional

Probab=99.01  E-value=8.7e-09  Score=99.54  Aligned_cols=123  Identities=15%  Similarity=0.112  Sum_probs=95.9

Q ss_pred             HHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhc--hHHHHHHHHHHHHHh
Q 015968          130 LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIG  207 (397)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~  207 (397)
                      +++.+|.+....  ++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+  +++.+++..++.|+|
T Consensus       255 ~~~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G  332 (448)
T PRK09848        255 VRYVLNDTGLFT--VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIG  332 (448)
T ss_pred             EeeecCChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence            344566654433  4444444667788999999999999999999999988888877766643  567777777889999


Q ss_pred             hhhhhhhhhhhhhcccCcc-------cchhhhhHHHHHHHHHHHHHHHHhhhcC
Q 015968          208 IGISSAIVPLYISEISPTE-------IRGALGSVNQLFICVGILAALVAGLPLA  254 (397)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~l~  254 (397)
                      .+...+...++.+|..+.+       .+|...+.++....+|..+|+.+.+.+.
T Consensus       333 ~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l  386 (448)
T PRK09848        333 QGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998889998888754       3488899999999999999888877654

>TIGR00901 2A0125 AmpG-related permease

Probab=99.00  E-value=9.7e-09  Score=96.02  Aligned_cols=113  Identities=12%  Similarity=0.153  Sum_probs=91.4

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHH-HHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh-----------ch
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLL-AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----------QS  193 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----------~~  193 (397)
                      ..+.+.+++|.+..+.  +.+.++.. ++..++.+++|++.||+|||+.++.+.++.++...+..+.           ++
T Consensus       231 ~~~~~l~~~g~~~~~~--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (356)
T TIGR00901       231 LTTLFLLDMGFSKEEI--ALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPH  308 (356)
T ss_pred             HHHHHHHHcCCCHHHH--HHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Confidence            3444445589988877  77776655 5678999999999999999999988888887776655442           34


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHH
Q 015968          194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFIC  240 (397)
Q Consensus       194 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  240 (397)
                      .+.+..+.++.+++.+...+...+++.|.+|+++||+.+++.++..+
T Consensus       309 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       309 LLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            56777788899999999999999999999999999999999877543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.00  E-value=1.5e-08  Score=99.20  Aligned_cols=127  Identities=13%  Similarity=0.041  Sum_probs=108.9

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh---chHHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---QSVQTMIIGRV  202 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~r~  202 (397)
                      ...+++..+|.+..+.  |+....+.++..++.++.|++.||+|+|+++..+.++.+++.++....   ++.+...+..+
T Consensus       282 ~~~~lq~v~g~s~~~a--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~  359 (495)
T PRK14995        282 MAQELQFVHGLSPLEA--GMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMA  359 (495)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            3456777789998888  999999999999999999999999999999998888887777655432   45666677788


Q ss_pred             HHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcC
Q 015968          203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA  254 (397)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  254 (397)
                      +.|++.|...+.....+.+..|+++++.+.++++....+|..+|+.+.+.+.
T Consensus       360 l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        360 LLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             HHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888888889999999999999999999999999999888764

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.96  E-value=1.5e-08  Score=97.29  Aligned_cols=128  Identities=26%  Similarity=0.264  Sum_probs=105.7

Q ss_pred             hhhHHHHHHH-hCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhc--hHHHHHHH
Q 015968          124 NGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIG  200 (397)
Q Consensus       124 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~  200 (397)
                      +...+++.++ +|.+ +..  +.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+.+  +.+.+++.
T Consensus       245 ~~~~~y~~~~vl~~~-~~~--~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  321 (428)
T PF13347_consen  245 NTFLPYYFTYVLGNE-GLI--SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLIL  321 (428)
T ss_pred             hhHHHHHHHHHhcCc-hhh--HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3344554444 5555 334  7788888999999999999999999999999999999999998888775  99999999


Q ss_pred             HHHHHHhhhhhhhhhhhhhhcccCcc-------cchhhhhHHHHHHHHHHHHHHHHhhhcC
Q 015968          201 RVLAGIGIGISSAIVPLYISEISPTE-------IRGALGSVNQLFICVGILAALVAGLPLA  254 (397)
Q Consensus       201 r~l~G~~~~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~l~  254 (397)
                      -++.|++.+..+....++++|..+.+       ..|...+.+....-+|..+++.+.+.+.
T Consensus       322 ~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l  382 (428)
T PF13347_consen  322 FILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL  382 (428)
T ss_pred             HHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999988732       2378889998888888888888777654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.96  E-value=5.1e-09  Score=97.38  Aligned_cols=122  Identities=28%  Similarity=0.353  Sum_probs=101.9

Q ss_pred             hhhHHH-HHHHhCCC-chhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh---chHHHHH
Q 015968          124 NGALEY-LAKDLGIA-ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---QSVQTMI  198 (397)
Q Consensus       124 ~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~---~~~~~~~  198 (397)
                      ....|. +.+++|.+ ..+.  +++.++..++..++.++.|+++||+|+|+.+........+..+...+.   ++....+
T Consensus       226 ~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (352)
T PF07690_consen  226 SFFLPLYLQEVLGFSGPSQA--GLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLI  303 (352)
T ss_dssp             HHHHHHHCCHHHHCCTHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHH
T ss_pred             hcccchhhhhccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            334555 48889998 5666  888999999999999999999999999888777777766666555443   4557777


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHH
Q 015968          199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAAL  247 (397)
Q Consensus       199 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  247 (397)
                      +.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+||
T Consensus       304 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  304 IALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            7888899999999999999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.96  E-value=1.7e-08  Score=96.20  Aligned_cols=133  Identities=16%  Similarity=-0.071  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHH-hh-----chHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 015968          147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA-TA-----QSVQTMIIGRVLAGIGIGISSAIVPLYIS  220 (397)
Q Consensus       147 ~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~-~~-----~~~~~~~~~r~l~G~~~~~~~~~~~~~~~  220 (397)
                      ..+..+...+..+++|+++||+|+|+++.++.++.+++..... ..     .+++.+.+..++..++.|........++.
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip  371 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA  371 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence            3344567788899999999999999999998887777664322 11     24555555544444444444444555666


Q ss_pred             cccCc---------------------ccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhc
Q 015968          221 EISPT---------------------EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (397)
Q Consensus       221 ~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  279 (397)
                      +.||+                     ++-|.+.|+..+...+|+.+.|.+-+...+...++...|+...+..++++++.+
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            66653                     134788889999999988888866566555556788888888877776665544

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.96  E-value=1e-07  Score=89.74  Aligned_cols=124  Identities=10%  Similarity=0.090  Sum_probs=87.9

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHH---Hh-hchHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---AT-AQSVQTMIIGR  201 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~---~~-~~~~~~~~~~r  201 (397)
                      ....+.+++|.+..+.  +++.+...++..++.++.|++.||+|||+.+..+.++..+..+..   .. ..+.+.+.++-
T Consensus       217 ~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (377)
T PRK11102        217 GPFVYIELNGVSPQNF--GYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGV  294 (377)
T ss_pred             CHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            3445667789988877  899999999999999999999999999999988876654433222   22 22444444444


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHH-HHHHHHHHHHHhhh
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLF-ICVGILAALVAGLP  252 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~  252 (397)
                      .+.+.+.+........++.|..| +.++.+.++.+.. ..+|..+++++++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        295 AAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44455555555556667778776 6789888886654 56778888877654

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.95  E-value=3.9e-08  Score=88.96  Aligned_cols=155  Identities=28%  Similarity=0.432  Sum_probs=120.5

Q ss_pred             HhHhhchhhHHHHHHHhCCCc--hhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhch--
Q 015968          118 YHLGVVNGALEYLAKDLGIAE--NTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQS--  193 (397)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~--  193 (397)
                      ++........+.+..+++.+.  ...  ++..+.+.++..++.++.|.++||+|||+.++.+.....++.++.++..+  
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (338)
T COG0477          16 LDLGLLSPALPLLLSTLSLSSGRLLY--GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVG   93 (338)
T ss_pred             HhcchHHHHHHHHHHHcCCCchhHHH--HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccch
Confidence            444454556777777777665  245  89999999999999999999999999998888888766666666666665  


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhcccCc-ccchhhhhHHHH-HHHHHHHHHHHHhhhcCCC-CcchHHHHHHhHHH
Q 015968          194 VQTMIIGRVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQL-FICVGILAALVAGLPLAGN-PLWWRTMFGLAAIP  270 (397)
Q Consensus       194 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~-~~~w~~~~~~~~~~  270 (397)
                      .+.+++.|++.|++.+...+....++.|+++. ++|+...+.... ...+|.++++++++.+... ..+|++.|++....
T Consensus        94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (338)
T COG0477          94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            89999999999999999999999999999997 568888888877 5777888888776655432 25799977666655


Q ss_pred             HHHH
Q 015968          271 SILL  274 (397)
Q Consensus       271 ~~~~  274 (397)
                      ....
T Consensus       174 ~~~~  177 (338)
T COG0477         174 GLLL  177 (338)
T ss_pred             HHHH
Confidence            5433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.93  E-value=1.6e-07  Score=88.52  Aligned_cols=153  Identities=20%  Similarity=0.216  Sum_probs=113.7

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhc----ccch-HHHHHHhhHHHHHHHHHHHhhc------hH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGR-TRTFQLDAVPLAAGAFLCATAQ------SV  194 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~Gr-r~~l~~~~~~~~~~~~~~~~~~------~~  194 (397)
                      ++-++.+.+|++....  |.+..+.=+--++.-|+.|.++|    |+|| |+.++++.+..++.++++-.++      +.
T Consensus        35 Ll~fYTdv~Gis~~~a--G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~  112 (467)
T COG2211          35 LLFFYTDVFGLSAALA--GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKL  112 (467)
T ss_pred             HHHHHhcccCCcHHHH--HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcch
Confidence            5567778899998777  88888888888999999999999    4786 5677888888888888877665      34


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhcccCc-ccchhhhhHHHHHHHHHHHHHHHHhhh----cCCC--CcchHHHHHHh
Q 015968          195 QTMIIGRVLAGIGIGISSAIVPLYISEISPT-EIRGALGSVNQLFICVGILAALVAGLP----LAGN--PLWWRTMFGLA  267 (397)
Q Consensus       195 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~----l~~~--~~~w~~~~~~~  267 (397)
                      ...++...+.+++.........++.+|+.+. +||.+..++-..+..+|..+..++...    +.+.  ..||+...++.
T Consensus       113 ~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~  192 (467)
T COG2211         113 IYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVL  192 (467)
T ss_pred             HHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHH
Confidence            4566677888999888888888899998754 778888888777777775543333322    2222  35888888888


Q ss_pred             HHHHHHHHHHhcc
Q 015968          268 AIPSILLALGMGL  280 (397)
Q Consensus       268 ~~~~~~~~~~~~~  280 (397)
                      +++.++..+..++
T Consensus       193 ~vi~~i~~l~~~~  205 (467)
T COG2211         193 GVIGVILLLFCFF  205 (467)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777666655443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.92  E-value=2.8e-08  Score=96.69  Aligned_cols=127  Identities=12%  Similarity=0.006  Sum_probs=92.7

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHh-----hchHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT-----AQSVQTMIIG  200 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~  200 (397)
                      ..+++.+...-+....  +++.+...++.+++.+++++++||+|+|+.+.++.++.+++.+...+     .++.+.+++.
T Consensus       253 ~~~y~~~y~~~~~~~~--~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  330 (473)
T PRK10429        253 FAIYYFTYVIGDADLF--PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIA  330 (473)
T ss_pred             heeeEEEEECCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHH
Confidence            3344444333233333  66777777888999999999999999999998888776666554432     3456667777


Q ss_pred             HHHHHHhhhhhhhhhhhhhhcccCc-----cc--chhhhhHHHHHHHHHHHHHHHHhhhcC
Q 015968          201 RVLAGIGIGISSAIVPLYISEISPT-----EI--RGALGSVNQLFICVGILAALVAGLPLA  254 (397)
Q Consensus       201 r~l~G~~~~~~~~~~~~~~~~~~~~-----~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~  254 (397)
                      -++.|++.+...+...++++|..+.     .+  .|..++......-+|..+++.+.+.+.
T Consensus       331 ~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l  391 (473)
T PRK10429        331 GILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL  391 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888999998888888999998552     22  366888888888888888888777654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.91  E-value=2.8e-08  Score=94.28  Aligned_cols=120  Identities=15%  Similarity=0.141  Sum_probs=80.9

Q ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHh
Q 015968          128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIG  207 (397)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  207 (397)
                      ..+.+++|.+..+.  +++.+...++..++.++.+++.||+|||+++.++.++..++.++..+.++.+..+....+.+.+
T Consensus       228 ~~~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  305 (392)
T PRK10473        228 VLLMEQMGFSRGEY--AIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAG  305 (392)
T ss_pred             HHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567789988777  8888899999999999999999999999999999988888888777766555444444444444


Q ss_pred             hhhhhhhhhhhhhcccCcccc-hhhhhHHHHHHHHHHHHHHHHhh
Q 015968          208 IGISSAIVPLYISEISPTEIR-GALGSVNQLFICVGILAALVAGL  251 (397)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~~  251 (397)
                      .+..++.  ....+..|.++| +.+.++...+..+|+.+++.+.+
T Consensus       306 ~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~  348 (392)
T PRK10473        306 FSVGFGV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAA  348 (392)
T ss_pred             HHHHhHH--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443333  233445554444 45555554444455544444443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.88  E-value=2.7e-07  Score=84.79  Aligned_cols=129  Identities=17%  Similarity=0.159  Sum_probs=97.3

Q ss_pred             HHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccc-----hHHHHHH-hhHHHHHHHHHHHhh-----c------
Q 015968          130 LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG-----RTRTFQL-DAVPLAAGAFLCATA-----Q------  192 (397)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G-----rr~~l~~-~~~~~~~~~~~~~~~-----~------  192 (397)
                      +..|++++..-.  +.+.++..+. ....+.+|..||+.+     ||..+++ |.++...+..+..++     .      
T Consensus         6 MIvEL~vpA~lv--~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~   82 (403)
T PF03209_consen    6 MIVELGVPAWLV--ALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSS   82 (403)
T ss_pred             HHHHhccHHHHH--HHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence            456788876655  7777777664 456899999999999     8866644 455555555444332     2      


Q ss_pred             --hH---HHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchH
Q 015968          193 --SV---QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWR  261 (397)
Q Consensus       193 --~~---~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~  261 (397)
                        .+   ....+...+.|+|.+.......++++|..|+++|+++.++......+|.+++.++.+.+.+....-|
T Consensus        83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~r  156 (403)
T PF03209_consen   83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPER  156 (403)
T ss_pred             cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence              11   2344556788999999999999999999999999999999999999999999999998877633333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK11043 putative transporter; Provisional

Probab=98.86  E-value=5.3e-07  Score=85.77  Aligned_cols=128  Identities=13%  Similarity=0.127  Sum_probs=96.1

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHH---Hh--hchHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLC---AT--AQSVQTMIIG  200 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~---~~--~~~~~~~~~~  200 (397)
                      ..|.+.+++|.+..+.  ++....+.++..++.++.+++.||+|+|+.+....++.+++.+..   ..  .++.+.+++.
T Consensus       225 ~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (401)
T PRK11043        225 GSPFILEQMGYSPADI--GLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIP  302 (401)
T ss_pred             HhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            3455667789988777  887778888889999999999999999987766555544443322   22  3455556666


Q ss_pred             HHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC
Q 015968          201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN  256 (397)
Q Consensus       201 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  256 (397)
                      ..+.|++.+..++.......+..| ++|+++.++++.....+...++.+.+.+.+.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        303 FCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            778888888888888877777776 5699999999988777777777777777654

>PRK09669 putative symporter YagG; Provisional

Probab=98.85  E-value=6.5e-08  Score=93.35  Aligned_cols=112  Identities=16%  Similarity=0.145  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHh--hchHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT--AQSVQTMIIGRVLAGIGIGISSAIVPLYISE  221 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~  221 (397)
                      +.+.....++..++.+++++++||+|+|+.+.++.++.++..+...+  .++.+.+++..++.|++.+...+...++++|
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad  346 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD  346 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45566667778888899999999999999998887766654433222  3567777888889999999999999999998


Q ss_pred             ccCcc-------cchhhhhHHHHHHHHHHHHHHHHhhhcCC
Q 015968          222 ISPTE-------IRGALGSVNQLFICVGILAALVAGLPLAG  255 (397)
Q Consensus       222 ~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  255 (397)
                      ..+.+       ..|...+.+.....+|..+|+.+++.+.+
T Consensus       347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87522       22667788888888998888888877654

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.82  E-value=5.3e-07  Score=81.08  Aligned_cols=173  Identities=16%  Similarity=0.063  Sum_probs=129.1

Q ss_pred             chHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhccc-chHHHHHHhh
Q 015968          100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDA  178 (397)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-Grr~~l~~~~  178 (397)
                      +..|.+.....+..+..+.   . -..+|.+..|-|+|..+.  |++.+...+......+....+.+|. .+|+..+...
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~---~-~~WLP~ili~~G~sa~~a--G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~  281 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYI---V-IGWLPAILIDRGLSAAEA--GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL  281 (395)
T ss_pred             chhHHHHHHHHhhHHHHHH---H-HHHHHHHHHHcCCCHHHh--hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            4456565555555555433   2 235678888899999999  9999999999999999999999965 5777878888


Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccc-hhhhhHHHHHHHHHHHHHHHHhhhcCCCC
Q 015968          179 VPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIR-GALGSVNQLFICVGILAALVAGLPLAGNP  257 (397)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  257 (397)
                      +++.++.+.+.+.+....+.- -++.|+|.|+.++.....+.+.....+. +.-.++.+....+=..+||.+.|++-+..
T Consensus       282 ~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~  360 (395)
T COG2807         282 LLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT  360 (395)
T ss_pred             HHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence            888888887777654333322 4899999999999999999988876544 44455555555555677899999998888


Q ss_pred             cchHHHHHHhHHHHHHHHHHhc
Q 015968          258 LWWRTMFGLAAIPSILLALGMG  279 (397)
Q Consensus       258 ~~w~~~~~~~~~~~~~~~~~~~  279 (397)
                      .+|+...+..+...++..+.-+
T Consensus       361 gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         361 GSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             CChHHHHHHHHHHHHHHHHHHh
Confidence            8999988887777766665543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.82  E-value=2.8e-07  Score=89.60  Aligned_cols=134  Identities=19%  Similarity=0.111  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhh----hhcc-cchHHHH--HHhhHHHHHHHHHHHh---------hchHHHHHHHHHHHHHh
Q 015968          144 GWIVSSLLAGATVGSFTGGS----LADK-FGRTRTF--QLDAVPLAAGAFLCAT---------AQSVQTMIIGRVLAGIG  207 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~----l~d~-~Grr~~l--~~~~~~~~~~~~~~~~---------~~~~~~~~~~r~l~G~~  207 (397)
                      +++.++..+.-.+.+++..+    +.+| .+.+...  .+|.++.+++.+..++         ..+++++++..++.|+|
T Consensus       315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~g  394 (475)
T TIGR00924       315 IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLG  394 (475)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence            67788877777777777554    4444 3334444  7788888888777664         46899999999999999


Q ss_pred             hhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHh
Q 015968          208 IGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM  278 (397)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~  278 (397)
                      +....+...+++++..|++.||+++|++.....+|..+++.+....... .+|.+.|...++..++..++.
T Consensus       395 e~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  464 (475)
T TIGR00924       395 ELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP-QGVTGVFGKIGLVTLLVGVVM  464 (475)
T ss_pred             HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998888766554 578888877776665555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.80  E-value=7.3e-08  Score=91.99  Aligned_cols=175  Identities=21%  Similarity=0.176  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHH----HHHHHHHHHhhhhhhcccchHHHHHHhhHH
Q 015968          105 FVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSL----LAGATVGSFTGGSLADKFGRTRTFQLDAVP  180 (397)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~  180 (397)
                      +.....+..+..++.........+.....++.+..... +......    .+...+..++.|.++||+|||..+.+..+.
T Consensus        23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~  101 (463)
T KOG2816|consen   23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLEN-GLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFG  101 (463)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchh-hhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHH
Confidence            34444444555555454545556666666655433221 3333333    566788899999999999999999999988


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHH--hhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCc
Q 015968          181 LAAGAFLCATAQSVQTMIIGRVLAGI--GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL  258 (397)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~r~l~G~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  258 (397)
                      ..+..+...+.. +|.++    +.|+  +.+.......++++|....++|...+|+.......+..++|.+++.+... .
T Consensus       102 ~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~-~  175 (463)
T KOG2816|consen  102 TILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF-L  175 (463)
T ss_pred             HHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-c
Confidence            888877776655 44333    3333  23456677889999999999999999999999999999999999988776 7


Q ss_pred             chHHHHHHhHHHHHHHHH-HhccCCCChH
Q 015968          259 WWRTMFGLAAIPSILLAL-GMGLSPESPR  286 (397)
Q Consensus       259 ~w~~~~~~~~~~~~~~~~-~~~~~~e~~~  286 (397)
                      |.-..|++..+..++..+ ..+++||+-.
T Consensus       176 ~~a~~f~ia~~~~~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  176 GIALVFLIAAASGILSLLYMLLFLPESLQ  204 (463)
T ss_pred             CchHHHHHHHHHHHHHHHHHhhccccccC
Confidence            888888888877766655 4556788743

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.78  E-value=1.5e-06  Score=86.68  Aligned_cols=154  Identities=19%  Similarity=0.198  Sum_probs=119.8

Q ss_pred             hhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcc-cchHHHHHHhhHHHHHHHHHHHhhch--------H
Q 015968          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQS--------V  194 (397)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~~--------~  194 (397)
                      ..+..++.+.+|.+.+..  ..+...+....-+.++++|+++|+ +|+++.++++.++..++.++.++...        .
T Consensus         8 aiLvlYl~~~lg~~~~~A--~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~   85 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTS--TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD   85 (654)
T ss_pred             HHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence            335667777889988777  667777777778889999999995 79999999999999999887776421        2


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhcccCccc---chhhhhHHHHHHHHHHHHHHHHhhhcCCC------CcchHHHHH
Q 015968          195 QTMIIGRVLAGIGIGISSAIVPLYISEISPTEI---RGALGSVNQLFICVGILAALVAGLPLAGN------PLWWRTMFG  265 (397)
Q Consensus       195 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~w~~~~~  265 (397)
                      ...+++-.+.++|.|++-+...+...|.+++++   |-..+.+++.+.++|+++++.+...+.+.      ..+|.+.|.
T Consensus        86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~  165 (654)
T TIGR00926        86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG  165 (654)
T ss_pred             HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence            335566677888889999999999999997643   46778888899999999998888776532      136999998


Q ss_pred             HhHHHHHHHHHHhc
Q 015968          266 LAAIPSILLALGMG  279 (397)
Q Consensus       266 ~~~~~~~~~~~~~~  279 (397)
                      +.+++.++.+++..
T Consensus       166 i~~i~m~ia~lvf~  179 (654)
T TIGR00926       166 VPAILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88887766665543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.77  E-value=3e-07  Score=87.64  Aligned_cols=128  Identities=9%  Similarity=-0.111  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhccc
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS  223 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~  223 (397)
                      +...+.+..+..+|.++++++.||+++|+++.+..++.++..++..+.++... +++-++.|++.+..+|.......+..
T Consensus       272 ~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~  350 (410)
T TIGR00885       272 ANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGL  350 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            45566666788999999999999999999999999998888888888776544 56667888999999999999999999


Q ss_pred             CcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCC-----cchHHHHHHhHHHHHHH
Q 015968          224 PTEIRGALGSVNQLFICVGILAALVAGLPLAGNP-----LWWRTMFGLAAIPSILL  274 (397)
Q Consensus       224 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~w~~~~~~~~~~~~~~  274 (397)
                      +++.+..+.++ .++ .+|+.+.|.+.|.+.+..     .+.++.|++..++.+..
T Consensus       351 g~~~~~~s~~l-~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~  404 (410)
T TIGR00885       351 GQDTKYGAAGL-VMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI  404 (410)
T ss_pred             hhhhhhhHHHH-HHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence            86643333333 333 389999999999988742     25777777655444333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.77  E-value=1.2e-08  Score=94.06  Aligned_cols=181  Identities=15%  Similarity=0.023  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHH------HHH-HHHHHHHHHHHHHhhhhhhcccchHHHHHHhh
Q 015968          106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQ------GWI-VSSLLAGATVGSFTGGSLADKFGRTRTFQLDA  178 (397)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~  178 (397)
                      ++..+..+++.-......+.....+.+..|+...+...      ... .-+...++..|-.+...++|++|||++.+.+.
T Consensus       306 Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF  385 (538)
T KOG0252|consen  306 LLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGF  385 (538)
T ss_pred             HHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhH
Confidence            33444455544443444444666777777765443310      111 11122233446666778899999999999999


Q ss_pred             HHHHHHHHHHHhhch----HHHHHHHHHHHHH-hhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhc
Q 015968          179 VPLAAGAFLCATAQS----VQTMIIGRVLAGI-GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL  253 (397)
Q Consensus       179 ~~~~~~~~~~~~~~~----~~~~~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  253 (397)
                      +++++..+..+...|    -..++++..+..+ +.-+.......+.+|.||.+.|++.-|+..+..-+|.++|...-..+
T Consensus       386 ~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~  465 (538)
T KOG0252|consen  386 FIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYL  465 (538)
T ss_pred             HHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHh
Confidence            999999988887654    2334444433333 22233444566789999999999999999999999999998888887


Q ss_pred             CCC----CcchHHHHHHhHHHHHHHHHHhccCCCChH
Q 015968          254 AGN----PLWWRTMFGLAAIPSILLALGMGLSPESPR  286 (397)
Q Consensus       254 ~~~----~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~  286 (397)
                      .++    ..+.++++++.+.+.++..+..+++||+.+
T Consensus       466 t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~  502 (538)
T KOG0252|consen  466 TDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG  502 (538)
T ss_pred             hhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence            762    267899999999999999999899998854

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.77  E-value=3.3e-07  Score=89.64  Aligned_cols=134  Identities=15%  Similarity=0.082  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHHHHhh----hhhhcccchHHHHHHhhHHHHHHHHHHHhhch---------HHHHHHHHHHHHHhhhh
Q 015968          144 GWIVSSLLAGATVGSFTG----GSLADKFGRTRTFQLDAVPLAAGAFLCATAQS---------VQTMIIGRVLAGIGIGI  210 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~----g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~r~l~G~~~~~  210 (397)
                      +++.++..+...+..++.    +++.+|++..+.+.++.++.+++.+..++..+         .+++++.+++.|+|+..
T Consensus       319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~  398 (500)
T PRK09584        319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM  398 (500)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence            566666665555555555    67777777778899999999999888766644         46788899999999999


Q ss_pred             hhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcC-----C----CCcchHHHHHHhHHHHHHHHHH
Q 015968          211 SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA-----G----NPLWWRTMFGLAAIPSILLALG  277 (397)
Q Consensus       211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----~----~~~~w~~~~~~~~~~~~~~~~~  277 (397)
                      ..|...+++.+..|++.||+.+|.+.....+|..++..+.....     .    ...++.+.|...++.+++..++
T Consensus       399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~  474 (500)
T PRK09584        399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVL  474 (500)
T ss_pred             HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888888777766654211     1    1124678887777766544433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.76  E-value=2e-07  Score=89.17  Aligned_cols=153  Identities=21%  Similarity=0.193  Sum_probs=114.8

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhccc---c--hHHHHHHhhHHHHHHHHHHHhh----chHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF---G--RTRTFQLDAVPLAAGAFLCATA----QSVQT  196 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~---G--rr~~l~~~~~~~~~~~~~~~~~----~~~~~  196 (397)
                      ..+++.+++|++.++.  ..+.+...+... ..+++|.++|.+   |  ||+.++++.++..++.+..+..    .+...
T Consensus        12 ~~~~l~~~l~ls~~~~--~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQL--QRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            6688999999999887  666777666544 478899999976   3  5566666777776655555543    24566


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcccCc--ccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHH
Q 015968          197 MIIGRVLAGIGIGISSAIVPLYISEISPT--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL  274 (397)
Q Consensus       197 ~~~~r~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~  274 (397)
                      ..++-++..+|.+....++-+.+.|...+  +.||...+.......+|.+++..++|.+.+. .++++.|.+.+++.++.
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~-~~~~~~f~i~~~~~~l~  167 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS-FGPQGVFLISAALPLLM  167 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc-CCCeEEehHHHHHHHHH
Confidence            66677888888889999999999998743  3367777888888899999999999998877 78899998887777666


Q ss_pred             HHHhccCC
Q 015968          275 ALGMGLSP  282 (397)
Q Consensus       275 ~~~~~~~~  282 (397)
                      .+..+++.
T Consensus       168 ~~~~~~~~  175 (433)
T PF03092_consen  168 LIVALFLL  175 (433)
T ss_pred             HHHHHHhh
Confidence            55544443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.74  E-value=3.1e-08  Score=92.97  Aligned_cols=162  Identities=19%  Similarity=0.155  Sum_probs=132.1

Q ss_pred             HHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHH
Q 015968          116 FGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQ  195 (397)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~  195 (397)
                      .+...+.+...+-.-.+|.+-...-.  |........+-++.-++.+++.+|+|+-+++..++.+.++=.+..++..|.|
T Consensus       383 mG~g~~lv~tFLfWHled~~~~~~Lf--Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W  460 (618)
T KOG3762|consen  383 MGAGVGLVFTFLFWHLEDLGGIKTLF--GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPW  460 (618)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCcceee--eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCch
Confidence            33333333334444457777555444  7767777777788888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHH-HHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHH
Q 015968          196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLF-ICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILL  274 (397)
Q Consensus       196 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~  274 (397)
                      +.+..-+++|+..+.++..+.+|++...|++.|..+.++.... .++|--+|.++||.+... .|-|..|++.++.+++.
T Consensus       461 ~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~-fg~~ttf~~~giAcl~~  539 (618)
T KOG3762|consen  461 MVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER-FGARTTFRIFGIACLVT  539 (618)
T ss_pred             heeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee-ehhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987655 588888999999998877 78888888888877666


Q ss_pred             HHHhcc
Q 015968          275 ALGMGL  280 (397)
Q Consensus       275 ~~~~~~  280 (397)
                      ++....
T Consensus       540 l~~~~~  545 (618)
T KOG3762|consen  540 LALFIS  545 (618)
T ss_pred             HHHHHH
Confidence            554433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.71  E-value=3.3e-06  Score=77.67  Aligned_cols=229  Identities=14%  Similarity=0.117  Sum_probs=135.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHH-HHHHhhHHHHHHHHHHHhhch--H-HHHHHHHHHHHHhhhhhhhh
Q 015968          139 NTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTR-TFQLDAVPLAAGAFLCATAQS--V-QTMIIGRVLAGIGIGISSAI  214 (397)
Q Consensus       139 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~-~l~~~~~~~~~~~~~~~~~~~--~-~~~~~~r~l~G~~~~~~~~~  214 (397)
                      .+..++...++..+..++..|+.|.++|+.|+|| .+-...++..++.++..+.++  + +..++...+..++.......
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            3445588888888889999999999999999655 445555555666666666544  4 44555557778888888888


Q ss_pred             hhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHh--hhcCC---------------CCcchHHHHHHhHHHHHHHHHH
Q 015968          215 VPLYISEISPTEIRGALGSVNQLFICVGILAALVAG--LPLAG---------------NPLWWRTMFGLAAIPSILLALG  277 (397)
Q Consensus       215 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~---------------~~~~w~~~~~~~~~~~~~~~~~  277 (397)
                      ..+++.+..++++-++..++-.....+|+.+.-++.  ..+..               ....=|..+.+.++..++..+-
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP  215 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP  215 (438)
T ss_pred             hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence            889999999987666666655555555555443332  11111               1244678888888777666654


Q ss_pred             h-ccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhHHHHHHHHHHHHHHhh
Q 015968          278 M-GLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLA  356 (397)
Q Consensus       278 ~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (397)
                      + +..++.++-. .+. ........++                       -+.++++..+++.....+++..++    .-
T Consensus       216 m~~~v~~~~~~~-~~~-~~~l~~g~k~-----------------------L~~t~k~i~~~~~i~~FLiA~~~~----~D  266 (438)
T COG2270         216 MILNVHDAEKIS-SPP-PTALRNGFKE-----------------------LKSTFKEIRGRKNLVLFLIARFFY----ID  266 (438)
T ss_pred             HHhccccccccc-ccc-hHHHHHHHHH-----------------------HHHHHHHHhcccchHHHHHHHHHH----Hh
Confidence            4 4455544310 000 0011111111                       123455565555444444433332    23


Q ss_pred             hhHHHHHhHHHHHH-HcCCChh--HHHHHHHHHHHHHhhhhcc
Q 015968          357 GINAVVYYSTSVFR-SVGIESD--VAASALVGAANVFGNYSIS  396 (397)
Q Consensus       357 ~~~~~~~~~~~~~~-~~g~~~~--~~~~~~~~~~~~~g~~~~~  396 (397)
                      |.+.+..+...+-. ++|.+..  ........+..++|+++++
T Consensus       267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g  309 (438)
T COG2270         267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAG  309 (438)
T ss_pred             hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46667767666665 6788865  4445556666677766653

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.71  E-value=2.2e-06  Score=81.36  Aligned_cols=126  Identities=16%  Similarity=0.129  Sum_probs=93.5

Q ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhH-HHHHHHHHHHh--hchHHHHHHHHHHH
Q 015968          128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV-PLAAGAFLCAT--AQSVQTMIIGRVLA  204 (397)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~-~~~~~~~~~~~--~~~~~~~~~~r~l~  204 (397)
                      ..+.+.+|.+..+.  +++.....++..++.++.+++.||+|++........ +..+.......  ..+.+.+++..++.
T Consensus       232 ~~~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (394)
T PRK11652        232 VLMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALF  309 (394)
T ss_pred             HHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            35555589888777  888888888888999999999999984433322222 22222222222  23566677788899


Q ss_pred             HHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC
Q 015968          205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN  256 (397)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  256 (397)
                      |++.+...+....+..|.+| ++++...++.+....+|..+++.+++.+...
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        310 FFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            99999999999999999887 4689999999999999999999998887654

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.69  E-value=1.9e-07  Score=89.47  Aligned_cols=153  Identities=15%  Similarity=0.073  Sum_probs=104.0

Q ss_pred             hhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccch---------HHHHHHhhHHHHHHHHHHHhhch--
Q 015968          125 GALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR---------TRTFQLDAVPLAAGAFLCATAQS--  193 (397)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr---------r~~l~~~~~~~~~~~~~~~~~~~--  193 (397)
                      ..+.++.+-+|.+-.+.  |++.++..+...+..+++|.++||.-+         |..-.++....+++.+..++.+.  
T Consensus       280 y~PtY~~~VL~f~v~~~--G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~  357 (466)
T KOG2532|consen  280 YLPTYLKEVLGFDVRET--GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEH  357 (466)
T ss_pred             HhhHHHHHHhCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCc
Confidence            34557777899998888  999999999999999999999998744         22334555555566666666542  


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhh-hhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC--CcchHHHHHHhHHH
Q 015968          194 VQTMIIGRVLAGIGIGISSAIV-PLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN--PLWWRTMFGLAAIP  270 (397)
Q Consensus       194 ~~~~~~~r~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~~~w~~~~~~~~~~  270 (397)
                      .+..+++ +..+++..+..... ..-..|.. +++-+..+|+.+....+..+++|.+.+.+...  ...|+++|++.+++
T Consensus       358 ~~~a~~~-l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i  435 (466)
T KOG2532|consen  358 RLLAVIL-LTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGI  435 (466)
T ss_pred             chHHHHH-HHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHH
Confidence            2111111 11222222222222 22222334 45679999999999999999999999998842  24799999999888


Q ss_pred             HHHHHHHhccC
Q 015968          271 SILLALGMGLS  281 (397)
Q Consensus       271 ~~~~~~~~~~~  281 (397)
                      .++..+.+.++
T Consensus       436 ~~~~~i~f~~f  446 (466)
T KOG2532|consen  436 LIVGNIIFLFF  446 (466)
T ss_pred             HHHhchheeEe
Confidence            87776655544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.66  E-value=1.7e-07  Score=87.76  Aligned_cols=114  Identities=19%  Similarity=0.229  Sum_probs=85.3

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHh--hc--hHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT--AQ--SVQTMIIGR  201 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~--~~--~~~~~~~~r  201 (397)
                      ...++.+.+|.+..+.  +++.+.+.++..++.+++|+++||+|+|+.+..+....+++..+..+  ..  +.+.+++..
T Consensus       248 ~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (366)
T TIGR00886       248 FAMFFKDQFGLSKVTA--GAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLF  325 (366)
T ss_pred             HHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence            4456667789988777  88888999999999999999999999998887777666665554443  22  555555555


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHH
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVG  242 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  242 (397)
                      ++.+++.|...+....++.+.+| +++|.+.|+.+....+|
T Consensus       326 ~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       326 VALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            55666666666667777888887 57899999888776554

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.65  E-value=1.2e-06  Score=82.70  Aligned_cols=130  Identities=20%  Similarity=0.283  Sum_probs=97.6

Q ss_pred             hhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhc--hHHHHHHHH
Q 015968          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGR  201 (397)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r  201 (397)
                      +....++. ++.++..+....+.......+..++.+++.++++|+|+|+++.++.++.+++.++..+.+  +.+.+++..
T Consensus       256 ~s~~~yy~-~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~  334 (467)
T COG2211         256 GSIMVYYV-TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVAL  334 (467)
T ss_pred             hhhhheeE-EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHH
Confidence            33444432 234444444336677777777778899999999999999999999999999998887765  788888888


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcc-----cc--hhhhhHHHHHHHHHHHHHHHHhhhcC
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTE-----IR--GALGSVNQLFICVGILAALVAGLPLA  254 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~-----~r--~~~~~~~~~~~~~g~~~~~~~~~~l~  254 (397)
                      ++.+++.+...+...++++|..+-.     .|  |...+....+.=+|..++..+.+++.
T Consensus       335 ~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L  394 (467)
T COG2211         335 IIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL  394 (467)
T ss_pred             HHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998776432     22  67777777777777777766555543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.62  E-value=1.8e-10  Score=111.37  Aligned_cols=158  Identities=17%  Similarity=0.057  Sum_probs=101.4

Q ss_pred             hhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHH--h--h-ch----H
Q 015968          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA--T--A-QS----V  194 (397)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~--~--~-~~----~  194 (397)
                      ....+.+.++.+.+.. .   +......+...++.++...+.||+|||+.++.+.++.+++.+..+  .  . ++    -
T Consensus       273 ~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (451)
T PF00083_consen  273 FYYSPSIFENAGISNS-F---LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWS  348 (451)
T ss_pred             cccccccccccccccc-c---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3355777777777765 2   112233344556667777999999999999999998888877664  1  1 11    1


Q ss_pred             HHHHHHHHHHHHhhh-hhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHH-HH
Q 015968          195 QTMIIGRVLAGIGIG-ISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIP-SI  272 (397)
Q Consensus       195 ~~~~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~-~~  272 (397)
                      ...+++-.+..++.+ +..+....+.+|.||.+.|+++.++......++.++++.+...+.+. .+-...+++.+++ .+
T Consensus       349 ~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~-~~~~~~~~i~~~~~~i  427 (451)
T PF00083_consen  349 ILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN-LGGWGVFLIFAGVCLI  427 (451)
T ss_pred             cccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccchhhHHHHHH
Confidence            111222222222222 33455567889999999999999999998888888888887776655 3312333344444 44


Q ss_pred             HHHHHhccCCCChH
Q 015968          273 LLALGMGLSPESPR  286 (397)
Q Consensus       273 ~~~~~~~~~~e~~~  286 (397)
                      ..++..+++||+..
T Consensus       428 ~~i~~~~~lpET~g  441 (451)
T PF00083_consen  428 AIIFVYFFLPETKG  441 (451)
T ss_pred             HHhheeEEEeeCCC
Confidence            44556677899954

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=98.58  E-value=2e-07  Score=90.39  Aligned_cols=149  Identities=10%  Similarity=0.047  Sum_probs=115.3

Q ss_pred             HHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh----------chHHHHHHHH
Q 015968          132 KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA----------QSVQTMIIGR  201 (397)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~r  201 (397)
                      +.+|.+....  |++.....++.+++..+.+++.+|++.|+++.++.++.+++.+.....          ++.+.++..-
T Consensus       281 ~~lG~s~~~~--G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~  358 (468)
T TIGR00788       281 QCLPGGPSFS--GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS  358 (468)
T ss_pred             ccCCCCcchh--hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence            5688888888  999999999999999999999999999999999999999887554311          3333445556


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcc-----h--HHHHHHh-HHHHHH
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-----W--RTMFGLA-AIPSIL  273 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-----w--~~~~~~~-~~~~~~  273 (397)
                      ++.+++.+..+.....++.+..|++.+++..++..+..++|..+++.+++.+.+. .|     +  .|..++. .+..++
T Consensus       359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~-~g~~~~~~~~~~~~i~i~~~~~l~  437 (468)
T TIGR00788       359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET-IGITCDNSNNLWLLILGHSLAPLL  437 (468)
T ss_pred             HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcccccchHHHHHHHHHHHHH
Confidence            7888888888888999999999999999999999999999999999988887654 22     2  3333222 333344


Q ss_pred             HHHHhccCCC
Q 015968          274 LALGMGLSPE  283 (397)
Q Consensus       274 ~~~~~~~~~e  283 (397)
                      .+.+.+++|+
T Consensus       438 ~l~~~~llP~  447 (468)
T TIGR00788       438 PLPLLHLLPR  447 (468)
T ss_pred             HHHHHHhCCC
Confidence            4444456785

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.56  E-value=5.8e-07  Score=63.72  Aligned_cols=79  Identities=18%  Similarity=0.192  Sum_probs=71.8

Q ss_pred             HHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHH
Q 015968          117 GYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQT  196 (397)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  196 (397)
                      ++....+++.+|.+++|.+++.++.  +|+.+..++||.+|.+...++.++..+++.+..+.++..+..+.+++.++.+.
T Consensus         5 GigRFayTplLP~M~~~~~ls~~~a--g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~   82 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQADGGLSLSQA--GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWL   82 (85)
T ss_pred             hhHHHHHHhHhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            4445667889999999999999999  99999999999999999999999989999999999999999999999888765


Q ss_pred             H
Q 015968          197 M  197 (397)
Q Consensus       197 ~  197 (397)
                      +
T Consensus        83 w   83 (85)
T PF06779_consen   83 W   83 (85)
T ss_pred             H
Confidence            4

Note that many members are hypothetical proteins.

>PRK11462 putative transporter; Provisional

Probab=98.54  E-value=7.3e-06  Score=79.39  Aligned_cols=111  Identities=14%  Similarity=0.040  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhc--hHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ--SVQTMIIGRVLAGIGIGISSAIVPLYISE  221 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~~~~~  221 (397)
                      +++...+.++.+++.+++++++||+|+|+++..+.++.++..++..+.+  +...+++.-++.|++.+...+...++++|
T Consensus       266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad  345 (460)
T PRK11462        266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD  345 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788888899999999999999999988765554444333333322  23344445566787777766666667776


Q ss_pred             ccCc-----ccc--hhhhhHHHHHHHHHHHHHHHHhhhcC
Q 015968          222 ISPT-----EIR--GALGSVNQLFICVGILAALVAGLPLA  254 (397)
Q Consensus       222 ~~~~-----~~r--~~~~~~~~~~~~~g~~~~~~~~~~l~  254 (397)
                      ..+-     .+|  |...+......-+|..+++.+++.+.
T Consensus       346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL  385 (460)
T PRK11462        346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML  385 (460)
T ss_pred             hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6552     123  55556666667777777666655543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.53  E-value=3.6e-06  Score=82.03  Aligned_cols=135  Identities=16%  Similarity=0.080  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchHHH-------HHHhhHHHHHHHHHHH-----hh-----chHHHHHHHHHHHHH
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRT-------FQLDAVPLAAGAFLCA-----TA-----QSVQTMIIGRVLAGI  206 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~-------l~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~r~l~G~  206 (397)
                      +++.++..+...+..++.+++.||+|+|+.       +.+|.++.+++.+..+     +.     .+++.++...++.|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            466666667777888899999999999873       6777777776654321     21     357778888899999


Q ss_pred             hhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC---------CcchHHHHHHhHHHHHHHHHH
Q 015968          207 GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN---------PLWWRTMFGLAAIPSILLALG  277 (397)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---------~~~w~~~~~~~~~~~~~~~~~  277 (397)
                      |++...+....++.+..|++.++.+++++.....+|..+|..++......         ...+.+.|...++..++..++
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~  471 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV  471 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988887544210         013567777777666555444


Q ss_pred             h
Q 015968          278 M  278 (397)
Q Consensus       278 ~  278 (397)
                      +
T Consensus       472 ~  472 (489)
T PRK10207        472 M  472 (489)
T ss_pred             H
Confidence            4

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=2.7e-07  Score=83.72  Aligned_cols=146  Identities=14%  Similarity=0.128  Sum_probs=113.1

Q ss_pred             HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccc--hHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 015968          129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGI  206 (397)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  206 (397)
                      .+.+.+..+.-+.  |+..--..+.+.++..+.|.++||++  |-.....+++..++++....+++++.++++-++..|+
T Consensus       296 wm~e~m~~p~w~~--G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~  373 (464)
T KOG3764|consen  296 WMLETMFTPGWEV--GLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGF  373 (464)
T ss_pred             HHHHhccCCCcce--eeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHH
Confidence            3667777444355  55555566789999999999999999  5334455566666667777889999999999999999


Q ss_pred             hhhhhhhhhhhhhhcccCccc------chhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHH
Q 015968          207 GIGISSAIVPLYISEISPTEI------RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (397)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~  277 (397)
                      +.+...+.....+.+....++      -|...++...++.+|..+||.+++.+.+. .|++|...+.++..++..-+
T Consensus       374 ~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~-iGF~wl~~iig~~n~iyapv  449 (464)
T KOG3764|consen  374 GIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA-IGFEWLMTIIGILNLIYAPV  449 (464)
T ss_pred             HHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee-hhHHHHHHHHHHHHHHHHHH
Confidence            888887777666666655433      36778888999999999999999999887 89999988888877665543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.53  E-value=1.9e-06  Score=84.33  Aligned_cols=145  Identities=18%  Similarity=0.160  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchH-HHHHHhhHHHHHHHHHHHhh--chHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRT-RTFQLDAVPLAAGAFLCATA--QSVQTMIIGRVLAGIGIGISSAIVPLYIS  220 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr-~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~~~  220 (397)
                      +++...+.++..++.++.|.+..+++|- ..++++.+++.+++-+++..  +|....++.-++.|++.|...........
T Consensus       352 ~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~q  431 (599)
T PF06609_consen  352 GWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQ  431 (599)
T ss_pred             ehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeE
Confidence            7888888888999999999999988874 44467766666655444443  45556667778999999888887777777


Q ss_pred             cccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCC---------------------------------------------
Q 015968          221 EISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---------------------------------------------  255 (397)
Q Consensus       221 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------------------------------------------  255 (397)
                      -..|++.-+.+.++..+.-.+|+.+|.-+...+..                                             
T Consensus       432 l~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPG  511 (599)
T PF06609_consen  432 LIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPG  511 (599)
T ss_pred             eeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCC
Confidence            77888888999999988888887776655433221                                             


Q ss_pred             ----------------CCcchHHHHHHhHHHHHHHHHHhccCCCChHHH
Q 015968          256 ----------------NPLWWRTMFGLAAIPSILLALGMGLSPESPRWL  288 (397)
Q Consensus       256 ----------------~~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~  288 (397)
                                      ...++|++|+....++++.++..+++++..++.
T Consensus       512 it~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~m  560 (599)
T PF06609_consen  512 ITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKYM  560 (599)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHhh
Confidence                            002488999988888888888888888776543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.48  E-value=5.7e-06  Score=81.41  Aligned_cols=163  Identities=15%  Similarity=0.060  Sum_probs=100.4

Q ss_pred             HhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchH-----
Q 015968          120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSV-----  194 (397)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~-----  194 (397)
                      .+......+.+.+..|.+.+..   +...+..+...++..+...+.||+|||+.++.+.+.+.++.++.+.....     
T Consensus       311 ~~~~~~Y~~~if~~~g~~~~~~---~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~  387 (513)
T KOG0254|consen  311 INYVFYYSTTIFKSAGLKSDTF---LASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYP  387 (513)
T ss_pred             CceEEeehHHHHHhcCCCCchH---HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Confidence            3455557778888888875532   33444455566777777999999999999999999999999887754211     


Q ss_pred             --------HHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHH
Q 015968          195 --------QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGL  266 (397)
Q Consensus       195 --------~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~  266 (397)
                              ..+...-+.......+..++...+.+|.+|.+.|+++.++......+...+-.......... .++...|..
T Consensus       388 ~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~-~~~~~~f~~  466 (513)
T KOG0254|consen  388 NSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEA-LGIGGTFGY  466 (513)
T ss_pred             CcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchHHH
Confidence                    11111112222222333444556889999999999998887776665544433332222222 223445555


Q ss_pred             hHHHH-HHHH-HHhccCCCChH
Q 015968          267 AAIPS-ILLA-LGMGLSPESPR  286 (397)
Q Consensus       267 ~~~~~-~~~~-~~~~~~~e~~~  286 (397)
                      .+..+ +... ...+++||+..
T Consensus       467 f~~~~~~~~~~fv~~~~pETkg  488 (513)
T KOG0254|consen  467 FGGICLLSLIIFVFFFVPETKG  488 (513)
T ss_pred             HHHHHHHHHHHHheEEcccCCC
Confidence            44444 3333 45667899853

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.45  E-value=1.2e-05  Score=74.16  Aligned_cols=151  Identities=17%  Similarity=0.153  Sum_probs=121.5

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhc-ccchHHHHHHhhHHHHHHHHHHH---hhchHHHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-KFGRTRTFQLDAVPLAAGAFLCA---TAQSVQTMIIGR  201 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-~~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~r  201 (397)
                      +-|+=.+-||++..+.  .-+......|..++..+.|++.. |.++++.-.+++.+.+++..+..   ...+.+.+...-
T Consensus       231 LEPygg~Vfgmsv~eT--T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~  308 (403)
T PF03209_consen  231 LEPYGGEVFGMSVGET--TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGV  308 (403)
T ss_pred             cCCchhHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            3466677799999888  78899999999999988888766 78888888888877777765544   446788899999


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCC---------CCcchHHHHHHhHHHHH
Q 015968          202 VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG---------NPLWWRTMFGLAAIPSI  272 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---------~~~~w~~~~~~~~~~~~  272 (397)
                      ++.|++.|.+.....+.+.++..+++.|..+|.+.....++.-++.++++.+.+         ...+|..+|.+.++..+
T Consensus       309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~  388 (403)
T PF03209_consen  309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLL  388 (403)
T ss_pred             HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence            999999999988888999999988888999999999998888888888876543         22467888888777766


Q ss_pred             HHHHHh
Q 015968          273 LLALGM  278 (397)
Q Consensus       273 ~~~~~~  278 (397)
                      +.+++.
T Consensus       389 ~a~~ll  394 (403)
T PF03209_consen  389 AALVLL  394 (403)
T ss_pred             HHHHHH
Confidence            665544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.43  E-value=5.8e-06  Score=75.62  Aligned_cols=146  Identities=16%  Similarity=0.125  Sum_probs=112.5

Q ss_pred             HhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHH
Q 015968          120 LGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMII  199 (397)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  199 (397)
                      ..+.+....++.+..|++..+.  ....+.+..+.++|.+++.++..|+-..+++....++..+.++..++.++...+. 
T Consensus       253 va~gsfl~~y~~~~~g~~~~~a--a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~-  329 (422)
T COG0738         253 VAIGSFLVSYLEELLGLNEQQA--AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALY-  329 (422)
T ss_pred             HHHHHHHHHHHHhcCCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHH-
Confidence            3343444455555588888888  8999999999999999999999999999999999999999999999998865544 


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHH
Q 015968          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS  271 (397)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~  271 (397)
                      +-++.|++.+..+|...+...+..+. + ....+..-....+|+++-|.+.|++.+. .|-...+.+..+++
T Consensus       330 ~l~~ig~F~simfPTIfslal~~l~~-~-ts~~s~~l~maivGGAiiP~l~G~i~d~-~g~~~~~~~~pllc  398 (422)
T COG0738         330 ALFLIGLFNSIMFPTIFSLALKNLGE-H-TSVGSGLLVMAIVGGAIIPPLQGVIADM-FGIQLTFLIVPLLC  398 (422)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhccCc-c-ccccceeeeeheecchHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence            45788999999999999999999983 3 3444445555677888888888888877 66666655333333

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.42  E-value=9e-06  Score=65.60  Aligned_cols=108  Identities=13%  Similarity=0.119  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccC
Q 015968          145 WIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISP  224 (397)
Q Consensus       145 ~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~  224 (397)
                      ...++......+..++.+.+.+++|.|+.++++.+...+..... +-++.+.++.+-++.|++.+..+.....++.+...
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~  119 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST  119 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence            34556666678888889999999999999999999998666554 45678888999999999999999999999999999


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHHHhhhc
Q 015968          225 TEIRGALGSVNQLFICVGILAALVAGLPL  253 (397)
Q Consensus       225 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  253 (397)
                      ++.|++..+++......+.++|.++...+
T Consensus       120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  120 EETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888888887766544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.42  E-value=0.00019  Score=68.86  Aligned_cols=127  Identities=10%  Similarity=0.025  Sum_probs=93.6

Q ss_pred             hHHHHHHHhCCCc-----hhhHHHHHHHHHHHHHHHH-HHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh--c-----
Q 015968          126 ALEYLAKDLGIAE-----NTVLQGWIVSSLLAGATVG-SFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA--Q-----  192 (397)
Q Consensus       126 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~-~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~--~-----  192 (397)
                      .+-.+.+.+.++.     +..  .++-+...+...+. .++.+++++|++|++++-+....+.+..+++++.  +     
T Consensus        25 iLR~lKD~lvv~~~~~gae~i--~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~  102 (472)
T TIGR00769        25 ILRDTKDTLVVTAKGSGAEII--PFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLL  102 (472)
T ss_pred             HHHhhhhheeecccCCchhhH--HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhc
Confidence            4556677776632     233  78877776766666 8899999999999999988777777766665543  1     


Q ss_pred             ------------------------hHHHHHHHHHHHHHhhhhhhh-hhhhhhhcccCcccchhhhhHHHHHHHHHHHHHH
Q 015968          193 ------------------------SVQTMIIGRVLAGIGIGISSA-IVPLYISEISPTEIRGALGSVNQLFICVGILAAL  247 (397)
Q Consensus       193 ------------------------~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  247 (397)
                                              +.|...+..+...+......+ ....++.|.+..++-.+..+++..+.++|.++++
T Consensus       103 ~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg  182 (472)
T TIGR00769       103 HPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSG  182 (472)
T ss_pred             CCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                    123334444555555555565 6789999999999888999999999999999999


Q ss_pred             HHhhhcC
Q 015968          248 VAGLPLA  254 (397)
Q Consensus       248 ~~~~~l~  254 (397)
                      .+...+.
T Consensus       183 ~~~~~~~  189 (472)
T TIGR00769       183 RTIKYFS  189 (472)
T ss_pred             HHHHHHH
Confidence            8877765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.28  E-value=8e-05  Score=71.20  Aligned_cols=141  Identities=16%  Similarity=0.119  Sum_probs=85.4

Q ss_pred             hHH-HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHH-----hhchHHHHHH
Q 015968          126 ALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA-----TAQSVQTMII  199 (397)
Q Consensus       126 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~  199 (397)
                      ..| .+++.+|.+..+.  ++.......+..++..+.+.+.++.++++.+.....+..++.++..     ..++++..++
T Consensus       240 ~~P~~l~~~~g~s~~~~--gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~  317 (413)
T PRK15403        240 VSPVILIDAGGMTTSQF--AWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVL  317 (413)
T ss_pred             hChHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence            334 5556679988887  8887777778888888888766444443333222222222222221     1234444566


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHH
Q 015968          200 GRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS  271 (397)
Q Consensus       200 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~  271 (397)
                      ..++.++|.+...+......- .-....+|++.++.+.....+..+++.+++++.+.  +-.+.|...+++.
T Consensus       318 ~~~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~  386 (413)
T PRK15403        318 GTSLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN--GGRLPFHLLAVVA  386 (413)
T ss_pred             HHHHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHH
Confidence            778888888888777664322 11222468888888888877888888888877554  3344444444333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.26  E-value=8.8e-06  Score=78.47  Aligned_cols=156  Identities=14%  Similarity=0.008  Sum_probs=94.8

Q ss_pred             HHHHHHHhHhhchhhHHHHHHH-hCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcc----cchHHHHHHhhHHHHHHH-
Q 015968          112 GAILFGYHLGVVNGALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK----FGRTRTFQLDAVPLAAGA-  185 (397)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~Grr~~l~~~~~~~~~~~-  185 (397)
                      ..+........+....|.+.++ .|.+..+.  +.+...+.++.+++.++.|+++||    ..+|..+.....+..+.. 
T Consensus       281 ~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a--~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~  358 (495)
T KOG2533|consen  281 CYFFLKLVNYGFSYWLPLYLKSNGGYSELQA--NLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGA  358 (495)
T ss_pred             HHHHHhhccccHHHHHHHHHHcCCCcChHHh--ccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3333334344455567776666 56777777  899999999999999999999999    677777766666665544 


Q ss_pred             HHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccc-hhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHH
Q 015968          186 FLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIR-GALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMF  264 (397)
Q Consensus       186 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~  264 (397)
                      +......+.......-+....+.....+......++....+.| -...+....+.+.++++++.+-........+|.+.|
T Consensus       359 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f  438 (495)
T KOG2533|consen  359 ISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVF  438 (495)
T ss_pred             HHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHH
Confidence            4333333333333333333444555566666777777766555 344555555555555554444333222225788887


Q ss_pred             HHhHH
Q 015968          265 GLAAI  269 (397)
Q Consensus       265 ~~~~~  269 (397)
                      +....
T Consensus       439 ~~~~~  443 (495)
T KOG2533|consen  439 YMLVA  443 (495)
T ss_pred             HHHHH
Confidence            54433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.16  E-value=8.2e-05  Score=71.67  Aligned_cols=141  Identities=16%  Similarity=0.046  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcccc-hHHHHHHhhHHHHHHHHHHHhhch---------------------HHHHHHHHH
Q 015968          145 WIVSSLLAGATVGSFTGGSLADKFG-RTRTFQLDAVPLAAGAFLCATAQS---------------------VQTMIIGRV  202 (397)
Q Consensus       145 ~~~~~~~~~~~i~~~~~g~l~d~~G-rr~~l~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~r~  202 (397)
                      |....+.+...+.+++..++.+++| ||++..++.++.+++.+...+.++                     .+..++...
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            4445555555677778888999999 477779998888888877765432                     366777888


Q ss_pred             HHHHhhhhhhhhhhhhhhcccCcc--cchhhhhHHHHHHHHHHHHHHHHhhhcCCC-CcchHHHHHHhHHHHHHHHHHhc
Q 015968          203 LAGIGIGISSAIVPLYISEISPTE--IRGALGSVNQLFICVGILAALVAGLPLAGN-PLWWRTMFGLAAIPSILLALGMG  279 (397)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~w~~~~~~~~~~~~~~~~~~~  279 (397)
                      +.|+..+..+.+-.+++++..+.+  ..|..+|+++.+..+..++..+..|.+... ..+-.+.+.+.++..++..++.+
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            999999999999899999999854  349999999999999988888766664322 12345677777888777666544


Q ss_pred             -cCCCCh
Q 015968          280 -LSPESP  285 (397)
Q Consensus       280 -~~~e~~  285 (397)
                       .+|+++
T Consensus       469 ~~~~~~~  475 (477)
T TIGR01301       469 ILLPRPR  475 (477)
T ss_pred             HhCCCCC
Confidence             456654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.15  E-value=8.3e-05  Score=73.40  Aligned_cols=154  Identities=20%  Similarity=0.124  Sum_probs=106.3

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHH---HHHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQ---TMIIGRV  202 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~r~  202 (397)
                      ........+|.+..     +...........+....+.+.|++|||.....+.++..+++++.++.....   ...+...
T Consensus       340 gl~~~~~~lg~~~~-----~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (521)
T KOG0255|consen  340 GLSLNVSGLGGNIY-----LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPL  414 (521)
T ss_pred             hhhhhhhhcCchHH-----HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            33444455554432     333333334555556668999999999999999999999999988875433   3555556


Q ss_pred             HHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHH-HHHHHHhccC
Q 015968          203 LAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS-ILLALGMGLS  281 (397)
Q Consensus       203 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~-~~~~~~~~~~  281 (397)
                      +..++.+..+.....+.+|.+|...|..+.+.......+|.+++|.+..........+....  .+... +..++..+++
T Consensus       415 ~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~l  492 (521)
T KOG0255|consen  415 LGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLIL--FGWLALLLGLLSLLLL  492 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH--HHHHHHHHHHHHHhcC
Confidence            66666667777778999999999999999999999999999999998765433222233222  34344 3344445778


Q ss_pred             CCChH
Q 015968          282 PESPR  286 (397)
Q Consensus       282 ~e~~~  286 (397)
                      ||+..
T Consensus       493 pet~~  497 (521)
T KOG0255|consen  493 PETKG  497 (521)
T ss_pred             cccCC
Confidence            99854

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.12  E-value=1.6e-05  Score=73.81  Aligned_cols=125  Identities=20%  Similarity=0.253  Sum_probs=90.9

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhc----ccchHHHHHHh-hHHHHHHHHHHHhhchH------
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD----KFGRTRTFQLD-AVPLAAGAFLCATAQSV------  194 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~Grr~~l~~~-~~~~~~~~~~~~~~~~~------  194 (397)
                      +.+.+..++|++..-.  +.+-.+--+...+.+|+.|..+|    ||||||.++.. .+...++.++..++..+      
T Consensus        54 y~tPyl~~lGvphk~~--S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd  131 (498)
T KOG0637|consen   54 YLTPYLQSLGVPHKWS--SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD  131 (498)
T ss_pred             cccHHHHHcCCCcccc--cccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence            4455557799988666  55555555667788999999999    58987776555 45555666666665332      


Q ss_pred             -----------HHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchh-hhhHHHHHHHHHHHHHHHHhhh
Q 015968          195 -----------QTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGA-LGSVNQLFICVGILAALVAGLP  252 (397)
Q Consensus       195 -----------~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~  252 (397)
                                 ..+++..-+.=++.-..+..+-++++|....+++.+ +++++..+..+|+.+|..+++.
T Consensus       132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y  201 (498)
T KOG0637|consen  132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSY  201 (498)
T ss_pred             CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccc
Confidence                       233444444455666778888999999998877776 9999999999999999888764

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.11  E-value=1.9e-05  Score=55.50  Aligned_cols=62  Identities=24%  Similarity=0.309  Sum_probs=51.7

Q ss_pred             HhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHH
Q 015968          118 YHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPL  181 (397)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~  181 (397)
                      ...+.+.|..+...++.|++..+.  |.+.++..+...++++++|.++||+|+++.++....++
T Consensus        14 ~~~g~~~Pfl~~~~~~~Gl~~~~i--Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   14 AALGCLYPFLPLYLKQLGLSPSQI--GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHhhhhHhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            335555667777778899999998  99999999999999999999999999988877665443

>PTZ00207 hypothetical protein; Provisional

Probab=98.09  E-value=4.3e-05  Score=75.28  Aligned_cols=153  Identities=11%  Similarity=-0.009  Sum_probs=105.7

Q ss_pred             hHHHHHHHh-CCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcc---------cchHHHHHHhhHHHHHHHHHHHhhchHH
Q 015968          126 ALEYLAKDL-GIAENTVLQGWIVSSLLAGATVGSFTGGSLADK---------FGRTRTFQLDAVPLAAGAFLCATAQSVQ  195 (397)
Q Consensus       126 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~---------~Grr~~l~~~~~~~~~~~~~~~~~~~~~  195 (397)
                      -..+|.+.+ |.+.+......+++++.++..+|.+..|.++..         +.|--.+.+..+ +.++.++.++.-...
T Consensus       375 N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~  453 (591)
T PTZ00207        375 NARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKA  453 (591)
T ss_pred             cHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCcc
Confidence            456777777 663322100237888888999999999988722         222223333334 666666666554436


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHH-HHHhhhcCCC------------CcchHH
Q 015968          196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAA-LVAGLPLAGN------------PLWWRT  262 (397)
Q Consensus       196 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~~~~~l~~~------------~~~w~~  262 (397)
                      .+++..++.|++.|..+++....++|+|. |+-|+-..+......+|+.+- ..+.|.+.+.            ..=++.
T Consensus       454 ~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~  532 (591)
T PTZ00207        454 ALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVM  532 (591)
T ss_pred             HhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHh
Confidence            89999999999999999999999999999 778888888888888887664 4455554431            012788


Q ss_pred             HHHHhHHHHHHHHHHhcc
Q 015968          263 MFGLAAIPSILLALGMGL  280 (397)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~  280 (397)
                      .|++.+.++++..++...
T Consensus       533 ~~~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        533 PLAFLLGLSFLAFITSTY  550 (591)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            898888888777665443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.98  E-value=0.00048  Score=66.72  Aligned_cols=131  Identities=13%  Similarity=0.067  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccch--H----H-HHHHhhHHHHHHHHHHHhh---------chHHHHHHHHHHHHHh
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGR--T----R-TFQLDAVPLAAGAFLCATA---------QSVQTMIIGRVLAGIG  207 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Gr--r----~-~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~~  207 (397)
                      +|..++..+.-++..|+.+++=.|.+|  |    + =+.+|+++.+++.+...++         .+.+++++..+++++|
T Consensus       311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g  390 (493)
T PRK15462        311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA  390 (493)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence            677888777777777777777555532  2    1 1567777777777655431         2667788899999999


Q ss_pred             hhhhhhhhhhhhhcccCcccchhhhhHHHHH-HHHHHHHHHHHhhhcCCC-----------CcchHHHHHHhHHHHHHH
Q 015968          208 IGISSAIVPLYISEISPTEIRGALGSVNQLF-ICVGILAALVAGLPLAGN-----------PLWWRTMFGLAAIPSILL  274 (397)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~l~~~-----------~~~w~~~~~~~~~~~~~~  274 (397)
                      +-...|+..+.+++..|++.|+..+|.+... ..+|..++..++......           ...+...|...++..+++
T Consensus       391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999774 467777777766655311           124566776666666444

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.89  E-value=0.00013  Score=66.39  Aligned_cols=122  Identities=10%  Similarity=0.110  Sum_probs=104.1

Q ss_pred             HHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccc--hHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhh
Q 015968          132 KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIG  209 (397)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  209 (397)
                      +.+|.+..+.  |-+.+...+++.+.+....+..||..  -+-.+..++.++.-..++.+.+.....+.++-.+-.+..+
T Consensus       290 ~rfg~ss~~~--G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A  367 (451)
T KOG2615|consen  290 GRFGYSSMQQ--GKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTA  367 (451)
T ss_pred             CccCCChhhh--eeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHH
Confidence            5688888777  88888888888888888888888887  6777777777777777777888888888888888888888


Q ss_pred             hhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCC
Q 015968          210 ISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG  255 (397)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  255 (397)
                      ...+....++....|..+||..+|+......++-++||+++|.+..
T Consensus       368 ~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  368 SVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            8888888899999999999999999999999999999999987754

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=0.0018  Score=61.64  Aligned_cols=106  Identities=14%  Similarity=0.012  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcc
Q 015968          147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE  226 (397)
Q Consensus       147 ~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~  226 (397)
                      .++.+..+.+..++.+.+.|++|.|..++++.....+..+..-+ .|-+.++++-.+.|+|.+..+..-..|++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            66777788899999999999999999999999999988877766 44666788889999999999999999999999999


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhhc
Q 015968          227 IRGALGSVNQLFICVGILAALVAGLPL  253 (397)
Q Consensus       227 ~r~~~~~~~~~~~~~g~~~~~~~~~~l  253 (397)
                      .+.+..++..+....+.++|.++-..+
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~  161 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIY  161 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheee
Confidence            888888888777777777776654443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.81  E-value=0.00039  Score=64.86  Aligned_cols=131  Identities=15%  Similarity=0.020  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccC
Q 015968          145 WIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISP  224 (397)
Q Consensus       145 ~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~  224 (397)
                      .+.-+-.+-..+..+++.++.+|+.-+.-..+..++++++.++.+++++.+.-+++-.+.+++.|........+.+ .++
T Consensus        63 ~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~  141 (402)
T PF02487_consen   63 AVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYG  141 (402)
T ss_pred             HHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcC
Confidence            3444455566677777888899888665566677788889999999999998888889999988888777777644 555


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhcc
Q 015968          225 TEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL  280 (397)
Q Consensus       225 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  280 (397)
                      +    ..++.+..+.+.++++|+..-..+......-|..+.+...+.++..+.+++
T Consensus       142 ~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~  193 (402)
T PF02487_consen  142 K----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFF  193 (402)
T ss_pred             c----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            3    346777777777788887765555442244577777766666555544443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.76  E-value=0.00028  Score=67.69  Aligned_cols=124  Identities=14%  Similarity=0.071  Sum_probs=106.7

Q ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhh-hhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 015968          128 EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGG-SLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGI  206 (397)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  206 (397)
                      -++...++.+..+.  +.+.+.......+++++.. .+...+|-|+++..|++.-.+..++.+++++.|+++....+.++
T Consensus       266 ~yl~~~f~w~~~~~--s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~  343 (463)
T KOG2816|consen  266 LYLKAKFGWNKKEF--SDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVAL  343 (463)
T ss_pred             EEEeeecCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Confidence            45567789998888  8888888888888887776 77888999999999999999999999999999999988888777


Q ss_pred             hhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcC
Q 015968          207 GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA  254 (397)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  254 (397)
                      .. ...+...+.++-+..++++|+..++......+..+++|.+-+.+.
T Consensus       344 ~~-~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  344 AG-IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             hc-chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence            64 667888899999999999999999999999998888888776654

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.66  E-value=0.014  Score=55.40  Aligned_cols=131  Identities=12%  Similarity=0.007  Sum_probs=89.8

Q ss_pred             hHHHHHHHhCCCchhh-HHHHHHHHHHH-HHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh---------ch-
Q 015968          126 ALEYLAKDLGIAENTV-LQGWIVSSLLA-GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---------QS-  193 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~---------~~-  193 (397)
                      .+-.+.+.+.++.... ...++-....+ +..+..++.+++++++-+.+++-.....+..+.+++++.         ++ 
T Consensus        45 ~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~  124 (509)
T COG3202          45 LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDP  124 (509)
T ss_pred             HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCH
Confidence            3455666665552211 12566666666 667788889999999999999988777777777776652         11 


Q ss_pred             ----------------------HHHHHHHHHHHHHhhhhhhh-hhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHh
Q 015968          194 ----------------------VQTMIIGRVLAGIGIGISSA-IVPLYISEISPTEIRGALGSVNQLFICVGILAALVAG  250 (397)
Q Consensus       194 ----------------------~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  250 (397)
                                            .|...+..++.-+-.+.+.. .-.....|.+..++-.+..+.++.+.+++..++..+.
T Consensus       125 ~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~  204 (509)
T COG3202         125 EFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVT  204 (509)
T ss_pred             HHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence                                  13344444444443344444 4567788999988889999999999999998888888


Q ss_pred             hhcCCC
Q 015968          251 LPLAGN  256 (397)
Q Consensus       251 ~~l~~~  256 (397)
                      ..+...
T Consensus       205 ~~~~k~  210 (509)
T COG3202         205 SWLSKH  210 (509)
T ss_pred             HHHhhc
Confidence            777653

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.62  E-value=0.012  Score=55.87  Aligned_cols=165  Identities=11%  Similarity=-0.152  Sum_probs=81.6

Q ss_pred             HHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHH-
Q 015968          111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA-  189 (397)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~-  189 (397)
                      ...++...+.-...+..+.+..+..-+. -...+...-.-.+..++..+..|.+.||..|.++.-.+.++.-+...+.+ 
T Consensus         9 ~sh~ls~w~dR~w~Fa~~L~L~~i~p~s-Ll~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~   87 (432)
T PF06963_consen    9 LSHFLSTWGDRMWEFAVPLFLISIFPGS-LLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCA   87 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHH
Confidence            3333433434444555665555553211 11112223333345567778888999999999987776655444332221 


Q ss_pred             -----hh--c----hHHHHHHHH---HHHHHhhhh-hhhhhhhhhhcccC------cccchhhhhHHHHHHHHHHHHHHH
Q 015968          190 -----TA--Q----SVQTMIIGR---VLAGIGIGI-SSAIVPLYISEISP------TEIRGALGSVNQLFICVGILAALV  248 (397)
Q Consensus       190 -----~~--~----~~~~~~~~r---~l~G~~~~~-~~~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~g~~~~~~  248 (397)
                           +.  .    +.+....+.   .+.|...-. ......++=-||..      +..+....+..--.=.+.-+++|+
T Consensus        88 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl  167 (432)
T PF06963_consen   88 LFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPL  167 (432)
T ss_pred             HHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence                 11  1    112222222   222221111 11111122234422      122233344443334567889999


Q ss_pred             HhhhcCCCCcchHHHHHHhHHHHHHHHHH
Q 015968          249 AGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (397)
Q Consensus       249 ~~~~l~~~~~~w~~~~~~~~~~~~~~~~~  277 (397)
                      +.|.+... .+.+...++.++..++..+.
T Consensus       168 ~vG~l~t~-~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  168 FVGLLMTF-ASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHhhc-cCHHHHHHHHHHHHHHHHHH
Confidence            99998876 67887777777777665543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.61  E-value=0.00014  Score=65.22  Aligned_cols=235  Identities=14%  Similarity=0.088  Sum_probs=141.0

Q ss_pred             hHHHHH-HHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHH
Q 015968          126 ALEYLA-KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA  204 (397)
Q Consensus       126 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  204 (397)
                      ..|++. .+.+++..+.. .-+.-.-.-.+.+.-.+.=.+.|-.--|++++.-.+...+.-++..+.++.+.+=+.-++.
T Consensus        27 ~tpyl~gp~~NlT~~~l~-~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~Fy  105 (433)
T KOG3810|consen   27 LTPYLLGPDKNLTEDQLT-NEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFY  105 (433)
T ss_pred             cchhccCCCCCccHHHHh-cccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhc
Confidence            445544 34456554431 1222222333445555566789998899999888888888888888899999998889999


Q ss_pred             HHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC-CcchHHHHHHhHHHHHHHHHHhccCCC
Q 015968          205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-PLWWRTMFGLAAIPSILLALGMGLSPE  283 (397)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~e  283 (397)
                      |...+. .....+|+-+..+++++.++.+..-+....|-..|..++-.+... ...+...=++......+..++.+++|.
T Consensus       106 G~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~  184 (433)
T KOG3810|consen  106 GPATAA-EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPR  184 (433)
T ss_pred             ChHHHH-HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCC
Confidence            988644 455678888889999999999998888888888887777666543 133444444544444555666777777


Q ss_pred             ChHHHHHcCCHHHHH-HHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHH
Q 015968          284 SPRWLFQQGKKSEAE-KSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVV  362 (397)
Q Consensus       284 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (397)
                      .++...-+.+.++.. ....+.....+..+   -++       .....+.+-++.-+.++.++-+.+++....+|++-+.
T Consensus       185 v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~---~l~-------~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~  254 (433)
T KOG3810|consen  185 VKRSLYFHRLEDKISVGDLEEMNPQASYMS---YLR-------GAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVT  254 (433)
T ss_pred             CchhhhhhcccccceeccchhcCccchhhH---HHH-------HHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHH
Confidence            765332222211110 00000000000000   000       0001111112223444566667778888888889899


Q ss_pred             HhHHHHHHHc
Q 015968          363 YYSTSVFRSV  372 (397)
Q Consensus       363 ~~~~~~~~~~  372 (397)
                      +|...+.++.
T Consensus       255 nY~Q~LW~~~  264 (433)
T KOG3810|consen  255 NYTQILWKEV  264 (433)
T ss_pred             HHHHHHHHhh
Confidence            9988887775

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.57  E-value=0.0004  Score=65.41  Aligned_cols=108  Identities=19%  Similarity=0.171  Sum_probs=85.4

Q ss_pred             HHHHHhhHHHHHHHHHHHhh---c------hHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCccc---chhhhhHHHHHH
Q 015968          172 RTFQLDAVPLAAGAFLCATA---Q------SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEI---RGALGSVNQLFI  239 (397)
Q Consensus       172 ~~l~~~~~~~~~~~~~~~~~---~------~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~  239 (397)
                      ++++++.++..++.++..++   .      ..+.++++-++.++|.|+.=+....+.+|.+++++   |.....+++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            46777888888888774433   1      23568888889999999999999999999998763   467788899999


Q ss_pred             HHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhcc
Q 015968          240 CVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL  280 (397)
Q Consensus       240 ~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  280 (397)
                      ++|..++..+.+.+.++ .+|.+.|.+.++..++.++.++.
T Consensus        82 n~G~~~~~~~~~~i~~~-~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQN-YGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHC-S-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccc-cchhhhhhHHHHHHHHHHHHHHh
Confidence            99999999999888766 89999999988888777665554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK03612 spermidine synthase; Provisional

Probab=97.54  E-value=0.0097  Score=58.39  Aligned_cols=139  Identities=15%  Similarity=0.049  Sum_probs=78.2

Q ss_pred             HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHH--HH-HHHHHH----HhhchH-HHHHHH
Q 015968          129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP--LA-AGAFLC----ATAQSV-QTMIIG  200 (397)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~--~~-~~~~~~----~~~~~~-~~~~~~  200 (397)
                      .+.--+|.+..+.  +.+++++.+|.++|+.+++++.++.-++... +-..+  .+ ++..+.    ++.... ..++..
T Consensus        40 ~l~~~~G~s~~~~--~~ii~~fl~glalGs~l~~~~~~~~~~~~~~-~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~  116 (521)
T PRK03612         40 LASYLLGDSVTQF--STVIGLMLFAMGVGALLSKYLLRDAAAGFVA-VELLLALLGGLSALILYAAFAFQGLSRLLLYVL  116 (521)
T ss_pred             HHHHHhCchHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444567776666  8999999999999999998887443333221 11111  11 111111    111111 122333


Q ss_pred             HHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHH
Q 015968          201 RVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS  271 (397)
Q Consensus       201 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~  271 (397)
                      .++.++..|+..|....+..+... ++-+...|..+....+|+++|.++.+++.-...|-....++.+++.
T Consensus       117 ~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~  186 (521)
T PRK03612        117 VLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLN  186 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            456678888888877766654332 1235667777788888888888887776542244333333333333

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.50  E-value=0.0031  Score=58.93  Aligned_cols=106  Identities=22%  Similarity=0.147  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHH--HHHHHHH---HHhhchHHHHHHHHHHHHHhhhhhhhhhhhh
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP--LAAGAFL---CATAQSVQTMIIGRVLAGIGIGISSAIVPLY  218 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~--~~~~~~~---~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~  218 (397)
                      .+...+|.+|-.++.--...+  |+  |+..+.+.+-  ..+..++   .-+.++.|.+++.-+..|+..|..+......
T Consensus       284 ~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~  359 (402)
T PF02487_consen  284 RWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR  359 (402)
T ss_pred             HHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            677777777655554322211  33  3333333222  2222222   2345788988888999999999999999999


Q ss_pred             hhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhc
Q 015968          219 ISEISPTEIRGALGSVNQLFICVGILAALVAGLPL  253 (397)
Q Consensus       219 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  253 (397)
                      +.|-.++++|..++|....+-.+|..++.+++..+
T Consensus       360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999988887654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.50  E-value=0.0038  Score=61.64  Aligned_cols=156  Identities=18%  Similarity=0.160  Sum_probs=114.5

Q ss_pred             hhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcc-cchHHHHHHhhHHHHHHHHHHHhhc-------
Q 015968          121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQ-------  192 (397)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~-------  192 (397)
                      +....++.++..+++.....+  .-..+.+.-.....++++++++|- +||-+++.++.++..++.++..++.       
T Consensus        55 g~~~nlv~ylt~~~~~~~~~a--a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p  132 (571)
T KOG1237|consen   55 GLVSNLVTYLTLELHASGGGA--ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLP  132 (571)
T ss_pred             cchhHHHHHHHHHhccchHHH--HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            344567889999999888655  566777777777888999999996 5888999999888888865443321       


Q ss_pred             ---------------h---HHHHHHHHHHHHHhhhhhhhhhhhhhhcccC---cccc---hhhhhHHHHHHHHHHHHHHH
Q 015968          193 ---------------S---VQTMIIGRVLAGIGIGISSAIVPLYISEISP---TEIR---GALGSVNQLFICVGILAALV  248 (397)
Q Consensus       193 ---------------~---~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~---~~~r---~~~~~~~~~~~~~g~~~~~~  248 (397)
                                     +   ...++....+..+|.|+.-+...++-+|-++   ++++   ...+.++.....+|.+++-.
T Consensus       133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t  212 (571)
T KOG1237|consen  133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQT  212 (571)
T ss_pred             ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHH
Confidence                           1   1245555566777888888988899999998   3222   46778888888999888877


Q ss_pred             HhhhcCCCCcchHHHHHHhHHHHHHHHHHhc
Q 015968          249 AGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (397)
Q Consensus       249 ~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  279 (397)
                      +...+.+. .+|.+.|.+..+..++.+++++
T Consensus       213 ~~vyiq~~-~~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  213 VLVYIQDN-VGWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             HHHhhhhc-ccceeeccHHHHHHHHHHHHHH
Confidence            76666555 8999999887776655554433

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.49  E-value=0.0077  Score=55.08  Aligned_cols=135  Identities=15%  Similarity=0.117  Sum_probs=83.9

Q ss_pred             HHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhc-----ccchHHHH-HHhhHHHHHH
Q 015968          111 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-----KFGRTRTF-QLDAVPLAAG  184 (397)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-----~~Grr~~l-~~~~~~~~~~  184 (397)
                      +...+.+...+... .+|.+.+.-|.|.++.  +....++ . -..--++|.++.|     |+||||.- +-+..+.+..
T Consensus        38 ~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~--a~fS~ay-~-P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~  112 (510)
T KOG3574|consen   38 FLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ--AIFSFAY-W-PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLF  112 (510)
T ss_pred             HHHHHcCCchhHhh-hhHHHhcCCCcchhhh--hhhhhhh-h-HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHH
Confidence            33445555566655 7888888777776654  3222221 1 1233578999999     99988743 4444555555


Q ss_pred             HHHHHhh-----------chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHh
Q 015968          185 AFLCATA-----------QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAG  250 (397)
Q Consensus       185 ~~~~~~~-----------~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  250 (397)
                      +++.+..           ++...+....++.-+.++..-...-.+.-.+..+++-|.+......+...|..++..+-
T Consensus       113 mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  113 MLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             HHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence            5544432           34444555556677777777777777878888888878777766666666666655443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.45  E-value=0.05  Score=52.72  Aligned_cols=112  Identities=13%  Similarity=0.046  Sum_probs=76.1

Q ss_pred             HHHHHHHHH-HHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh---------c---------------------
Q 015968          144 GWIVSSLLA-GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA---------Q---------------------  192 (397)
Q Consensus       144 ~~~~~~~~~-~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~---------~---------------------  192 (397)
                      .++-....+ ...+...+..++++++++.+++-+....+.....+.++.         +                     
T Consensus        61 ~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~  140 (491)
T PF03219_consen   61 PFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAM  140 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHH
Confidence            344333333 344556778999999999998877776666666555541         0                     


Q ss_pred             -hHHHHHHHHHHHHHhhhhhhh-hhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCC
Q 015968          193 -SVQTMIIGRVLAGIGIGISSA-IVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG  255 (397)
Q Consensus       193 -~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  255 (397)
                       +.|.+.+..++.-+-.....+ .-..+..|.++.++-.+..+++..+.++|.+++..+...+.+
T Consensus       141 ~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  141 FRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             123333444444443334444 457889999999998999999999999999988887776665

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.28  E-value=0.001  Score=62.04  Aligned_cols=151  Identities=14%  Similarity=-0.013  Sum_probs=89.0

Q ss_pred             HHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccch-HHHHHHhhHHHHHHHHHHH-hh---chHHHHHHHHHHHH
Q 015968          131 AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-TRTFQLDAVPLAAGAFLCA-TA---QSVQTMIIGRVLAG  205 (397)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr-r~~l~~~~~~~~~~~~~~~-~~---~~~~~~~~~r~l~G  205 (397)
                      ...-|.+....  |++.....++.++++.+.|.+.||... |.++++......++..... ..   ...+.++..-.+.|
T Consensus       293 l~~sgY~~~~a--G~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g  370 (480)
T KOG2563|consen  293 LCPSGYEGVFA--GYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLG  370 (480)
T ss_pred             cccccCCcccc--chhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHH
Confidence            34456665555  999999999999999999999999874 5555555555555532221 11   23344555557788


Q ss_pred             Hhhhhhhhhhhhhhhccc-CcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCc--chHHH-HHHhHHHHHHHHHHhccC
Q 015968          206 IGIGISSAIVPLYISEIS-PTEIRGALGSVNQLFICVGILAALVAGLPLAGNPL--WWRTM-FGLAAIPSILLALGMGLS  281 (397)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~w~~~-~~~~~~~~~~~~~~~~~~  281 (397)
                      ++..+.+|+...+-.|.. |..| +...|+.+....+=+++-.++-+...+...  +|.+. -+......++.+++..++
T Consensus       371 ~~~~~~~Pig~ElgvE~TyPv~E-~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~  449 (480)
T KOG2563|consen  371 FFGTGYLPIGFELGVETTYPVAE-GTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFF  449 (480)
T ss_pred             HhhcCCCCcceeeeeeeccccCC-cccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhh
Confidence            888888998888888875 5444 555566555444433333344444443312  33432 233334444444444444


Q ss_pred             CCC
Q 015968          282 PES  284 (397)
Q Consensus       282 ~e~  284 (397)
                      +++
T Consensus       450 r~~  452 (480)
T KOG2563|consen  450 RPD  452 (480)
T ss_pred             hhh
Confidence            433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.23  E-value=0.016  Score=55.12  Aligned_cols=135  Identities=18%  Similarity=0.160  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchH-------HHHHHhhHHHHHHHHHHHhh----------chHHHHHHHHHHHHH
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRT-------RTFQLDAVPLAAGAFLCATA----------QSVQTMIIGRVLAGI  206 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr-------~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~r~l~G~  206 (397)
                      +|..++..+.-++..++..++-.+.+++       .=+-++.++.+++.++....          .+.++++...+++++
T Consensus       327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~  406 (498)
T COG3104         327 AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSF  406 (498)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            5777787777788888888777774443       22345555555555544332          367889999999999


Q ss_pred             hhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCC-----CCcchHHHHHHhHHHHHHHHHHh
Q 015968          207 GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG-----NPLWWRTMFGLAAIPSILLALGM  278 (397)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~~~~~~  278 (397)
                      |+=...++..++++...|++-.+..++.+......|..++..+++.-..     ........|+..+...++..+..
T Consensus       407 gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~  483 (498)
T COG3104         407 GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL  483 (498)
T ss_pred             HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888888888888877777666653110     11345567777777765555443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.15  E-value=0.00086  Score=58.16  Aligned_cols=97  Identities=22%  Similarity=0.312  Sum_probs=70.6

Q ss_pred             hhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHH
Q 015968          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVL  203 (397)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l  203 (397)
                      .+..-++-+.+|....+.  +.+...-+...++...+.|-++||-|||+.-+.-.+.+.++++ .-.++.+..++++|.+
T Consensus        57 gPYvYyLYstYgFgkG~I--gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~L  133 (454)
T KOG4332|consen   57 GPYVYYLYSTYGFGKGDI--GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVL  133 (454)
T ss_pred             CceeeeeehhcCccCCcc--ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhh
Confidence            344556667788887777  6655555556677778889999999999976655555554443 3456788899999999


Q ss_pred             HHHhhhhhhhhhhh-hhhccc
Q 015968          204 AGIGIGISSAIVPL-YISEIS  223 (397)
Q Consensus       204 ~G~~~~~~~~~~~~-~~~~~~  223 (397)
                      .|+..+..+...-+ +++|.-
T Consensus       134 GGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  134 GGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             hhHHHHHHHHHHHHHHHHHhh
Confidence            99999888877654 556654

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=96.87  E-value=0.0029  Score=59.37  Aligned_cols=126  Identities=21%  Similarity=0.169  Sum_probs=73.4

Q ss_pred             hCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccch-------HHHHHHhhHH----HHHHHHHHH-hhchHHHHHHHH
Q 015968          134 LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGR-------TRTFQLDAVP----LAAGAFLCA-TAQSVQTMIIGR  201 (397)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Gr-------r~~l~~~~~~----~~~~~~~~~-~~~~~~~~~~~r  201 (397)
                      .|.+.++.  -++..+...+..+|.+++|.++||+-|       .+.=.....+    .+.+.++.. ...+...+.+..
T Consensus       278 ~~~~~~~~--~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il  355 (493)
T KOG1330|consen  278 IGFDHNAT--LIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLIL  355 (493)
T ss_pred             hCCccccc--hhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHH
Confidence            35455555  577788888999999999999998432       2211111111    111111111 122222233333


Q ss_pred             HHHHHh-hhhhhhhhhhhhhcccCcccchhhhhHHHHH-HHHHHHHHHHHhhhcCCCCcchH
Q 015968          202 VLAGIG-IGISSAIVPLYISEISPTEIRGALGSVNQLF-ICVGILAALVAGLPLAGNPLWWR  261 (397)
Q Consensus       202 ~l~G~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~l~~~~~~w~  261 (397)
                      ++.|+. .....+...-+..|..|++.|..+.++-... ..+|..-+|-+.|.+.++..+|+
T Consensus       356 ~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  356 FLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            445543 3344555567788999999999999986655 45566666756667766545555

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=0.11  Score=49.76  Aligned_cols=104  Identities=19%  Similarity=0.185  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHhhhhhh---cccchHHHHHHhhHHHHHHHHHHHhh------------------chHHHHHHHHHHHH
Q 015968          147 VSSLLAGATVGSFTGGSLA---DKFGRTRTFQLDAVPLAAGAFLCATA------------------QSVQTMIIGRVLAG  205 (397)
Q Consensus       147 ~~~~~~~~~i~~~~~g~l~---d~~Grr~~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~r~l~G  205 (397)
                      .-...+|..++..+.+.++   +++||++.+.++.++..++.++.-+.                  +++...++.-++.|
T Consensus       285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G  364 (461)
T KOG3098|consen  285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG  364 (461)
T ss_pred             HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence            3334445555556666666   46799999999988888888776543                  24566777789999


Q ss_pred             HhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhh
Q 015968          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL  251 (397)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  251 (397)
                      ++-+........++.+.+| ++|..+.+++-.-..++..++.+...
T Consensus       365 ~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  365 FGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             hHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999994 56888888888887777766544433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.78  E-value=0.099  Score=49.85  Aligned_cols=127  Identities=18%  Similarity=0.151  Sum_probs=92.8

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh------c----hHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA------Q----SVQ  195 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~------~----~~~  195 (397)
                      .+..+...-|++....  |..-+.-.+....+.++..++.+|+|..+.=+++.....++..++..+      +    +..
T Consensus       280 lmt~yl~~~G~s~~~i--gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~  357 (432)
T PF06963_consen  280 LMTAYLKSQGYSPSVI--GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAY  357 (432)
T ss_pred             HHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence            4444444559998887  899999999999999999999999998888777777666555444321      1    223


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcC
Q 015968          196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA  254 (397)
Q Consensus       196 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  254 (397)
                      .++.+-.+.=+|.-++-....-++.|..|.++||...|.-.....+-.++-.+++..+.
T Consensus       358 ~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~  416 (432)
T PF06963_consen  358 LLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP  416 (432)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            34444444445555666677788999999999999999998888888777777665443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.70  E-value=0.029  Score=56.73  Aligned_cols=64  Identities=17%  Similarity=0.295  Sum_probs=48.0

Q ss_pred             hchhhHHHHHHHhCCCchhhHHHHHHHHHHH-HHHHHHHhhhhhhcccc--hHHHHHHhhHHHHHHHHH
Q 015968          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLA-GATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAFL  187 (397)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G--rr~~l~~~~~~~~~~~~~  187 (397)
                      .......++++++|++..+.  +++.+...+ +.+++.+++|+++||++  .|+.+.++.++..++.++
T Consensus       349 ~~~~lP~yl~~~~g~s~~~a--g~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       349 YITFLPKYLENQYGISSAEA--NFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHcCCcHHHH--HHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            33445567778899998888  888887665 67899999999999998  556776666666665433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.68  E-value=0.019  Score=54.69  Aligned_cols=140  Identities=12%  Similarity=0.071  Sum_probs=77.0

Q ss_pred             HHHHHHHHHhHhhchhhHHHHHHH--hCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhc-----ccchHHHHHH-hhHHH
Q 015968          110 CLGAILFGYHLGVVNGALEYLAKD--LGIAENTVLQGWIVSSLLAGATVGSFTGGSLAD-----KFGRTRTFQL-DAVPL  181 (397)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-----~~Grr~~l~~-~~~~~  181 (397)
                      .+.+++.+...+.....+|.+.++  -+++.++.  +.. ++...-+ -.-++|.++.|     |+||||..++ .-.+.
T Consensus         6 ~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~--~~f-Sla~~Pf-SlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~   81 (544)
T PF13000_consen    6 VLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ--AIF-SLASYPF-SLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS   81 (544)
T ss_pred             HHHHHHcCcccccccccchhhhccccCCCChhHh--eee-eeeechh-HHHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence            344555566555544467877777  56666655  322 1111111 12456666666     8998875433 33444


Q ss_pred             HHHHHHHHhhc------------------------hHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHH
Q 015968          182 AAGAFLCATAQ------------------------SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQL  237 (397)
Q Consensus       182 ~~~~~~~~~~~------------------------~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  237 (397)
                      ++.++..+..-                        +...+....++.=+.++..-.++-.+.-.+..+++++.+......
T Consensus        82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv  161 (544)
T PF13000_consen   82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV  161 (544)
T ss_pred             HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence            54444433221                        011233333344444455555555666777778888888777777


Q ss_pred             HHHHHHHHHHHHhhhc
Q 015968          238 FICVGILAALVAGLPL  253 (397)
Q Consensus       238 ~~~~g~~~~~~~~~~l  253 (397)
                      +...|..++..+--.+
T Consensus       162 G~~~Gyfls~tvFlal  177 (544)
T PF13000_consen  162 GQTAGYFLSFTVFLAL  177 (544)
T ss_pred             HhhhhHHHHHHHHHhh
Confidence            7777777665554444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.62  E-value=0.031  Score=53.62  Aligned_cols=107  Identities=14%  Similarity=0.081  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchH-HHHHHhhH---HHHHHHHHHHhh---------chHHHHHHHHHHHHHhhhh
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRT-RTFQLDAV---PLAAGAFLCATA---------QSVQTMIIGRVLAGIGIGI  210 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr-~~l~~~~~---~~~~~~~~~~~~---------~~~~~~~~~r~l~G~~~~~  210 (397)
                      -....+++++-.+|..+..+.. .-++| +.+.+..+   ++....++|..-         ++-+..++..++.|+..|-
T Consensus       310 ~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy  388 (437)
T TIGR00939       310 IICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY  388 (437)
T ss_pred             HHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence            3556666777777766544321 11222 13333232   233333344322         3556677778999999998


Q ss_pred             hhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhh
Q 015968          211 SSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL  251 (397)
Q Consensus       211 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  251 (397)
                      .......+..+..++++|..+..+...+..+|..+|..++.
T Consensus       389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888899999999988888888888888888877654

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.42  E-value=0.021  Score=54.92  Aligned_cols=149  Identities=11%  Similarity=0.022  Sum_probs=96.2

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh----------chHHHHHHHHHHHH
Q 015968          136 IAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA----------QSVQTMIIGRVLAG  205 (397)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~r~l~G  205 (397)
                      .+....  +.+..+..++..+|..+.....-+..-|+++.++.++.++..+.....          ++.+..+.--++..
T Consensus       252 fs~~f~--~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~  329 (433)
T PF03092_consen  252 FSPSFY--GTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEE  329 (433)
T ss_pred             cCHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHH
Confidence            555544  777777777778888888777777788888888887777665542211          11122222335555


Q ss_pred             HhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC-------CcchHHHHHHhHHHHHHHHHHh
Q 015968          206 IGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-------PLWWRTMFGLAAIPSILLALGM  278 (397)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------~~~w~~~~~~~~~~~~~~~~~~  278 (397)
                      +.....+.....+++++.|+..-|+..++..+..++|..++..++..+.+.       ..+-.+..++..++.++.+.+.
T Consensus       330 ~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll  409 (433)
T PF03092_consen  330 VIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLL  409 (433)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence            555566666778899999998889999999999999888887777766432       1122234444455554555555


Q ss_pred             ccCCCChH
Q 015968          279 GLSPESPR  286 (397)
Q Consensus       279 ~~~~e~~~  286 (397)
                      .++|+..+
T Consensus       410 ~lLp~~~~  417 (433)
T PF03092_consen  410 FLLPPQKR  417 (433)
T ss_pred             HHcCCCch
Confidence            56666543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.31  E-value=0.062  Score=51.56  Aligned_cols=49  Identities=10%  Similarity=0.003  Sum_probs=30.8

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHH
Q 015968          193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAA  246 (397)
Q Consensus       193 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  246 (397)
                      .++..++.-++.|++.+.......++.+ .+|++.    +..+..+.+++++++
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~  153 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLT  153 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHH
Confidence            4566667778889998888888777766 566543    333344444444443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=95.75  E-value=0.023  Score=54.44  Aligned_cols=77  Identities=13%  Similarity=0.069  Sum_probs=55.9

Q ss_pred             HHHHHH-HHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHH
Q 015968          196 TMIIGR-VLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSIL  273 (397)
Q Consensus       196 ~~~~~r-~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~  273 (397)
                      .+++.+ ++.|++.-.......++-++...+++++.+.+++.....++..++|++....... .|.|+...+.+...++
T Consensus       389 ~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~-~g~~~v~~~~~~~~l~  466 (488)
T KOG2325|consen  389 LYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL-SGPRPVWIILLCLLLV  466 (488)
T ss_pred             hheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh-cCccHHHHHHHHHHHH
Confidence            344443 4556666555556677889999999999999999999999999999988776655 6666666555444433

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.70  E-value=0.71  Score=43.28  Aligned_cols=165  Identities=13%  Similarity=-0.004  Sum_probs=77.0

Q ss_pred             HhhchhhHHHHHHHhCCCchhh-HHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh-------
Q 015968          120 LGVVNGALEYLAKDLGIAENTV-LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-------  191 (397)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-------  191 (397)
                      ++.+..+.++..+++-.+..+. ..........+...+....-..+.-|. |+++.....+...+..+.+.++       
T Consensus        34 WN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~il~i~~l~~~~v~~~~~  112 (406)
T KOG1479|consen   34 WNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIAILFIVTLDLALVKTDTW  112 (406)
T ss_pred             hHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence            4555557778877775444322 112222333333344444444555552 2222211111112222222221       


Q ss_pred             --chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHH
Q 015968          192 --QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAI  269 (397)
Q Consensus       192 --~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~  269 (397)
                        ..+...++.-.+.+++.|..+.......+++ |++.-+..++-.+.++.+-+++--+......+...+=...|.+..+
T Consensus       113 ~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~-P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~  191 (406)
T KOG1479|consen  113 TNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF-PSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTV  191 (406)
T ss_pred             cchhHHHHHHHHHHHhhhhhhhccchhhhhhcC-CHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHH
Confidence              2455666677788888888888777776554 5444333333233333333333322333333332333344444455


Q ss_pred             HHHHHHHHhccCCCChH
Q 015968          270 PSILLALGMGLSPESPR  286 (397)
Q Consensus       270 ~~~~~~~~~~~~~e~~~  286 (397)
                      +.++++++...+|..|-
T Consensus       192 ~~llC~i~y~~l~~lpf  208 (406)
T KOG1479|consen  192 ILLLCFVLYLVLPKLPF  208 (406)
T ss_pred             HHHHHHHHHHHhhcchH
Confidence            55555555555666653

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.23  E-value=0.0051  Score=60.60  Aligned_cols=134  Identities=16%  Similarity=0.192  Sum_probs=0.0

Q ss_pred             hhchhhHHHHHHHhCCCchhhHHHHHHHHHHH-HHHHHHHhhhhhhcccc--hHHHHHHhhHHHHHHHHHHH---h--hc
Q 015968          121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLA-GATVGSFTGGSLADKFG--RTRTFQLDAVPLAAGAFLCA---T--AQ  192 (397)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~G--rr~~l~~~~~~~~~~~~~~~---~--~~  192 (397)
                      +..++...+++.+|+++...+  +++.++..+ +.++|.+++|++..|+.  .|..+....+...+..++..   +  ++
T Consensus       323 G~~tF~pKylE~QF~~sas~A--~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~  400 (539)
T PF03137_consen  323 GFATFLPKYLESQFGLSASQA--SLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCP  400 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhCCCHHHH--HHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCC
Confidence            333445568899999998887  777766555 66788899999999874  45554444444333332210   0  00


Q ss_pred             -------------------------------------------------hHHHHHHHHHHHHHhhhhhhhhhhhhhhccc
Q 015968          193 -------------------------------------------------SVQTMIIGRVLAGIGIGISSAIVPLYISEIS  223 (397)
Q Consensus       193 -------------------------------------------------~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~  223 (397)
                                                                       .+..+++..++.-+..+.........+-.-.
T Consensus       401 ~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V  480 (539)
T PF03137_consen  401 NPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCV  480 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccC
Confidence                                                             0122333333433433444444445556777


Q ss_pred             CcccchhhhhHHHHH-HHHHHHHHHHHhhhcCCC
Q 015968          224 PTEIRGALGSVNQLF-ICVGILAALVAGLPLAGN  256 (397)
Q Consensus       224 ~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~l~~~  256 (397)
                      ++++|..++|+.... ..+|.+-||++-|.+.+.
T Consensus       481 ~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  481 PPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ----------------------------------
T ss_pred             ChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            888899999986655 466888888888888765

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.10  E-value=0.014  Score=55.93  Aligned_cols=71  Identities=23%  Similarity=0.286  Sum_probs=56.6

Q ss_pred             hHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHh-hHHHHHHHHHHHhh
Q 015968          119 HLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLD-AVPLAAGAFLCATA  191 (397)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~-~~~~~~~~~~~~~~  191 (397)
                      ..+.+.+.++.+.+++|++..+.  |.+.+.--+..+++.|++|+++||+-+|+.++++ ++....+.++..+.
T Consensus        26 ~~g~l~pll~vy~kQLGl~p~~~--Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv   97 (618)
T KOG3762|consen   26 RFGSLFPLLAVYFKQLGLNPAVV--GTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV   97 (618)
T ss_pred             cccccchHHHHHHHHcCCCHHHh--hhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence            34566778888999999999999  9999999999999999999999999876655554 55555566665553

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=94.25  E-value=0.42  Score=43.22  Aligned_cols=73  Identities=18%  Similarity=0.138  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhccc
Q 015968          150 LLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS  223 (397)
Q Consensus       150 ~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~  223 (397)
                      ..+..+...++.+.+..++|-|.+++++...+....... +-+.+..++..-.+.|++.+..+..-.+|++++-
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~N-l~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAAN-LEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-cchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            334455666666788999999999998887776554322 3367788888999999999998888778876654

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.91  E-value=0.017  Score=52.77  Aligned_cols=106  Identities=21%  Similarity=0.218  Sum_probs=3.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHH---HHHHHHHHHh----------hchHHHHHHHHHHHHHhhhhhh
Q 015968          146 IVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP---LAAGAFLCAT----------AQSVQTMIIGRVLAGIGIGISS  212 (397)
Q Consensus       146 ~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~---~~~~~~~~~~----------~~~~~~~~~~r~l~G~~~~~~~  212 (397)
                      ...+|+++-.+|..+.++.-=+..+++.+.+..+.   +....++|..          -++-+..++..++.|+..|-..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            45567777777777766532111123333333222   2222233311          2344667777889999999888


Q ss_pred             hhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhh
Q 015968          213 AIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL  251 (397)
Q Consensus       213 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  251 (397)
                      .....+..+..++++|..+..+...+..+|..+|..++.
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~  305 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSF  305 (309)
T ss_dssp             HHHH-----------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888889999999999988888877777788777766653

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=93.71  E-value=0.58  Score=40.93  Aligned_cols=79  Identities=18%  Similarity=0.084  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccc-chHHHHH----HhhHHHHHHHHHHHh-h----chHHHHHHHHHHHHHhhhhhhh
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQ----LDAVPLAAGAFLCAT-A----QSVQTMIIGRVLAGIGIGISSA  213 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~-Grr~~l~----~~~~~~~~~~~~~~~-~----~~~~~~~~~r~l~G~~~~~~~~  213 (397)
                      ....-++..|+.+|.+..|+.+... -||+.+.    .+.+++++..+.... .    .+.+.+++.-|+.|++.-+.++
T Consensus       144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence            3445566677778888888887744 4554443    223333333333211 1    1456678888899988777777


Q ss_pred             hhhhhhhcc
Q 015968          214 IVPLYISEI  222 (397)
Q Consensus       214 ~~~~~~~~~  222 (397)
                      +....-.|.
T Consensus       224 ViL~lPhEy  232 (267)
T PF07672_consen  224 VILNLPHEY  232 (267)
T ss_pred             HHhcChhhh
Confidence            766555555

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=93.43  E-value=2.9  Score=39.53  Aligned_cols=94  Identities=12%  Similarity=0.073  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchHHHH--HHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTF--QLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISE  221 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~  221 (397)
                      |.+-.+..+..+++.+..|.+..++.+-.-+  .+..++.+...++++..+|.|..+++.++.+...-...+++..-++.
T Consensus       288 G~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~  367 (412)
T PF01770_consen  288 GAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAK  367 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777888888889999999997777764443  34445556666778888999999999988887776777777766666


Q ss_pred             ccCcccchhhhhHHHH
Q 015968          222 ISPTEIRGALGSVNQL  237 (397)
Q Consensus       222 ~~~~~~r~~~~~~~~~  237 (397)
                      ....+.-|..+|+..+
T Consensus       368 ~l~~e~yaLVFGiNtf  383 (412)
T PF01770_consen  368 NLSEERYALVFGINTF  383 (412)
T ss_pred             hccccceeeeeeeHHH
Confidence            6665544666666544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=92.46  E-value=0.37  Score=45.07  Aligned_cols=106  Identities=16%  Similarity=0.090  Sum_probs=70.2

Q ss_pred             HHHHHH-HHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHH---------hhchHHHHHHHHHHHHHhhhhhhh
Q 015968          144 GWIVSS-LLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---------TAQSVQTMIIGRVLAGIGIGISSA  213 (397)
Q Consensus       144 ~~~~~~-~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~r~l~G~~~~~~~~  213 (397)
                      -++..+ +++.-.+|.+...++-++=.|+..  +..++-.+..-++.         +-.+-+.++..-.+.|+..|=...
T Consensus       285 ~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~--i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts  362 (406)
T KOG1479|consen  285 LLLVFLSFNVFDLIGSILAALLTWPDPRKLT--IPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS  362 (406)
T ss_pred             HHHHHHHhHHHHHhhhhhhhcccCCCCceeh--HHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence            345555 778888887777666554333322  22222222222222         124567788888999999988888


Q ss_pred             hhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhh
Q 015968          214 IVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGL  251 (397)
Q Consensus       214 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  251 (397)
                      ....+..+-.+++++-.+..+.......|..+|..++.
T Consensus       363 l~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  363 LIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW  400 (406)
T ss_pred             heehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            88888899999999888877777777777777766543

>TIGR00806 rfc RFC reduced folate carrier

Probab=89.20  E-value=7.5  Score=37.74  Aligned_cols=107  Identities=12%  Similarity=0.092  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccch--HHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhc
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGR--TRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISE  221 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Gr--r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~  221 (397)
                      |.+-.+..+..++..+..|++-.++.+  ...+-+..++.+...++++..+|.|..+++.++.+.......+++..-++.
T Consensus       301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~  380 (511)
T TIGR00806       301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIAS  380 (511)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666677778888999998776654  244445555666667778889999999999999998888888888888888


Q ss_pred             ccCcccchhhhhHHHHHHHHHHHHHHHHhhhc
Q 015968          222 ISPTEIRGALGSVNQLFICVGILAALVAGLPL  253 (397)
Q Consensus       222 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  253 (397)
                      ....+.-|..+|+..+.   +.++=.++...+
T Consensus       381 ~L~~~~~aLvFGiNtfv---Al~LQtilT~iV  409 (511)
T TIGR00806       381 SLSKELCALVFGINTFV---ATALKTIITAVV  409 (511)
T ss_pred             HhcccceEEEEecHHHH---HHHHHHheEEEE
Confidence            77766558888876544   333444444333

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=88.92  E-value=0.26  Score=46.64  Aligned_cols=128  Identities=12%  Similarity=-0.095  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhccc
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS  223 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~  223 (397)
                      .|-..++.+...+.+...-++++|+|-|+.+..+...+.++..+.+...+.+.....+-..|+-.+....+-...++++.
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~  414 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA  414 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence            35566777778888999999999999888777777767777777777777777777777777443333332222222211


Q ss_pred             ---------------------Cccc--chhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHH
Q 015968          224 ---------------------PTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS  271 (397)
Q Consensus       224 ---------------------~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~  271 (397)
                                           ....  +|...|+.++...+-.++..+..|.+.+...+-+..-+..+..+
T Consensus       415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s  485 (498)
T KOG0637|consen  415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVA  485 (498)
T ss_pred             HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHH
Confidence                                 1111  25556666666666666655555555554344444444444444

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=88.81  E-value=14  Score=31.49  Aligned_cols=43  Identities=14%  Similarity=0.151  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhh---hcccchHHHHHHhhHHHHHHHHH
Q 015968          145 WIVSSLLAGATVGSFTGGSL---ADKFGRTRTFQLDAVPLAAGAFL  187 (397)
Q Consensus       145 ~~~~~~~~~~~i~~~~~g~l---~d~~Grr~~l~~~~~~~~~~~~~  187 (397)
                      +......+++.+|..+.+.+   .++..+|+.....+++..+..+.
T Consensus        50 ~~~~~~i~~F~~G~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ll~~   95 (209)
T PF06912_consen   50 LRYLLAILSFILGAFLAGLIVRRSRRRRRRRWYRILLLLEAILLLI   95 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence            33444455666777777777   23444555555544444444433

The function of this family is unknown although a few members are thought to be membrane proteins.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=87.81  E-value=23  Score=32.79  Aligned_cols=85  Identities=18%  Similarity=0.185  Sum_probs=53.1

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHH-------HHHHHh--hchHHHHHHHHHHHH
Q 015968          135 GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG-------AFLCAT--AQSVQTMIIGRVLAG  205 (397)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~-------~~~~~~--~~~~~~~~~~r~l~G  205 (397)
                      |-.--+.  +++++.|.+++.+|+.+.-++.|.--.-+.+..-+++..++       .+.+++  .++-+.+++.-++.|
T Consensus        39 G~~Ilq~--S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG  116 (508)
T COG4262          39 GGGILQT--SLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIG  116 (508)
T ss_pred             CCceeeh--HHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            4333444  89999999999999999888877533322222222222221       112221  235567777888889


Q ss_pred             Hhhhhhhhhhhhhhhc
Q 015968          206 IGIGISSAIVPLYISE  221 (397)
Q Consensus       206 ~~~~~~~~~~~~~~~~  221 (397)
                      .-.|.-.|....++..
T Consensus       117 ~LVG~EiPL~mrml~~  132 (508)
T COG4262         117 VLVGAEIPLLMRMLQR  132 (508)
T ss_pred             HHHhcchHHHHHHHHH
Confidence            8888888888777755

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=84.66  E-value=2.1  Score=37.52  Aligned_cols=55  Identities=9%  Similarity=0.076  Sum_probs=33.7

Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHHhhhc---C-CCCcchHHHHHHhHHHHHHHHHHhcc
Q 015968          226 EIRGALGSVNQLFICVGILAALVAGLPL---A-GNPLWWRTMFGLAAIPSILLALGMGL  280 (397)
Q Consensus       226 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l---~-~~~~~w~~~~~~~~~~~~~~~~~~~~  280 (397)
                      |+|+....+...+.++|.++..+.--..   . .....|++++.+.+++.++-+++..+
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i   60 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII   60 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777777888877643321111   1 11246999998888777665555443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=82.82  E-value=5.1  Score=36.25  Aligned_cols=69  Identities=19%  Similarity=0.101  Sum_probs=57.0

Q ss_pred             HHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhc
Q 015968          185 AFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL  253 (397)
Q Consensus       185 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  253 (397)
                      ..+..+.++++..++.-+.-|+-.|..+.....-+.+-.++++|-.+++....+-.+|..++.+++-.+
T Consensus       333 ~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  333 QAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            344557789999999989999988888888877777777788899999999999899988888777554

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=82.77  E-value=1.4  Score=39.72  Aligned_cols=129  Identities=16%  Similarity=0.044  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcc
Q 015968          147 VSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTE  226 (397)
Q Consensus       147 ~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~  226 (397)
                      .-.-.+-..+..+....+.||+---.=..+..++.+.+.++.+++++.++-+++..+..++.|.......++.+ .+++ 
T Consensus        68 LLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss-~Y~~-  145 (409)
T KOG3880|consen   68 LLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS-RYPS-  145 (409)
T ss_pred             hhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc-cCCC-
Confidence            33334445555666667777754333333445667778888889999999888888888877766555444433 3332 


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhhcCC-CCcchHHHHHHhHHHHHHHHHHhcc
Q 015968          227 IRGALGSVNQLFICVGILAALVAGLPLAG-NPLWWRTMFGLAAIPSILLALGMGL  280 (397)
Q Consensus       227 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~w~~~~~~~~~~~~~~~~~~~~  280 (397)
                         ..++-+..+.+.++++|..--..+.+ ....-|-..++...+.++.++..++
T Consensus       146 ---~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~  197 (409)
T KOG3880|consen  146 ---IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFF  197 (409)
T ss_pred             ---ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHh
Confidence               23333444444444555444334443 2245666666666555555554444

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=82.36  E-value=19  Score=27.25  Aligned_cols=41  Identities=27%  Similarity=0.393  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHH
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAG  184 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~  184 (397)
                      +.......++..++..+.+.+.|..|.+..+.+..++..+.
T Consensus        90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        90 GLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             HHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            56666777788888888888888888766655544444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	397
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		1e-26

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 147/329 (44%), Gaps = 37/329 (11%)
Query: 94  QAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYL------AKDLGIAENTVLQGWIV 147
             + +S  +     VA LG +LFGY   V++G +E L       ++L  +    L G+ V
Sbjct: 2   NTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCV 61
Query: 148 SSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA------------------ 189
           +S L G  +G   GG  +++FGR  + ++ AV         A                  
Sbjct: 62  ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVY 121
Query: 190 TAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGALGSVNQLFICVG--IXXXX 247
            A  V   +I R++            P+YI+E++P  IRG L S NQ  I  G  +    
Sbjct: 122 LAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCV 181
Query: 248 XXXXXXXXXXXW-----WRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQ 302
                      W     WR MF    IP++L  + +   PESPRWL  +GK+ +AE  ++
Sbjct: 182 NYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILR 241
Query: 303 TLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVV 362
            + G    ++ + ++ ++         G   +F      V+ +G  L +FQQ  GIN V+
Sbjct: 242 KIMGNTLATQAVQEIKHS-LDHGRKTGGRLLMFGV---GVIVIGVMLSIFQQFVGINVVL 297
Query: 363 YYSTSVFRSVGIESDVA--ASALVGAANV 389
           YY+  VF+++G  +D+A   + +VG  N+
Sbjct: 298 YYAPEVFKTLGASTDIALLQTIIVGVINL 326

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	397
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	6e-07
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-04

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 14/165 (8%)

Query: 126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGA 185
           A+  +A+DL + E  V    ++ + L    V     G ++D+ GR     +         
Sbjct: 22  AIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79

Query: 186 FLCATAQSVQTMIIGRVLAGIGIG----ISSAIVP-LYISEISPTEIRGALGSVNQLFIC 240
            +  T  S+  +I    + G+G G    ++  +   LY      T++R A   +N   + 
Sbjct: 80  LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLY----ERTQLRHANSLLNMGILV 135

Query: 241 VGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLS-PES 284
             +LA L+ GL        WR  +    +    +   M    PE+
Sbjct: 136 SPLLAPLIGGLLDT--MWNWRACYLFLLVLCAGVTFSMARWMPET 178

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-----GRTRTFQLDAVPLAA 183
           YL +    A +     W           G+   G ++DK      G T  F +  V +A 
Sbjct: 278 YLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT 335

Query: 184 GAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGI 243
             +    A +    +I  ++ G  I     ++ L+  E++P   + A G+        G 
Sbjct: 336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAP---KKAAGTAAGFTGLFGY 392

Query: 244 LAALVAGLPLAG---NPLWWRTMFGLAAIPSILLAL 276
           L   VA   + G   +   W   F +    SIL  +
Sbjct: 393 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 428

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	397
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.97
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.94
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.92
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.85
2xut_A	524	Proton/peptide symporter family protein; transport	99.76
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.61
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.56
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.46
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.41
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.41
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.33
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.01
2xut_A	524	Proton/peptide symporter family protein; transport	98.88

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.97  E-value=2.9e-29  Score=243.35  Aligned_cols=292  Identities=32%  Similarity=0.565  Sum_probs=228.9

Q ss_pred             chHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCc------hhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHH
Q 015968          100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAE------NTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRT  173 (397)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~  173 (397)
                      +..+.+.++++++.++.++|.++++...+.+.++++.+.      .....+++.+++.+|.++|++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            445667777788899999999999999999999885432      22335899999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHH------------------hhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHH
Q 015968          174 FQLDAVPLAAGAFLCA------------------TAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVN  235 (397)
Q Consensus       174 l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  235 (397)
                      ++++.+++.++.++++                  +++|++.++++|+++|++.|+..+..+.+++|+.|+++|++..++.
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~  167 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN  167 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence            9999999999999998                  4789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCC-------CcchHHHHHHhHHHHHHHHHHhccCCCChHHHHHcCCHHHHHHHHHHHhCCc
Q 015968          236 QLFICVGILAALVAGLPLAGN-------PLWWRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQTLYGKE  308 (397)
Q Consensus       236 ~~~~~~g~~~~~~~~~~l~~~-------~~~w~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  308 (397)
                      +.+..+|.++++.++..+...       ..+||+.+.+..+..++.++..+++||+|+|+..+++.+++.+.+++...++
T Consensus       168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~  247 (491)
T 4gc0_A          168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence            999999999988887655321       2468888888888888888888899999999999999999998888876654


Q ss_pred             chHHHHHHHHhhcCCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHcCCChh--HHHHHHHHH
Q 015968          309 RVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSVGIESD--VAASALVGA  386 (397)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~  386 (397)
                      ..+++..+.++..++.+ +.......+   ..++..+......+.++.+.+.+.+|.+.+.+..+.+..  .....+.++
T Consensus       248 ~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (491)
T 4gc0_A          248 LATQAVQEIKHSLDHGR-KTGGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGV  323 (491)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHTTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhh-hhhhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHH
Confidence            44333322222111110 011111111   233455666667777888889999999999999887765  334455666


Q ss_pred             HHHHhhhhc
Q 015968          387 ANVFGNYSI  395 (397)
Q Consensus       387 ~~~~g~~~~  395 (397)
                      ..+++++++
T Consensus       324 ~~~~~~~~~  332 (491)
T 4gc0_A          324 INLTFTVLA  332 (491)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=4.7e-25  Score=210.42  Aligned_cols=256  Identities=16%  Similarity=0.163  Sum_probs=196.9

Q ss_pred             HHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHH
Q 015968          104 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAA  183 (397)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~  183 (397)
                      ..+..+++..+..+++.....+..|.+.+++|++..+.  +++.+++.+++.++.+++|+++||+|||++++++.++.++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~  103 (438)
T 3o7q_A           26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence            34445556666677777788889999999999999888  9999999999999999999999999999999999999999


Q ss_pred             HHHHH---HhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcC-CCCcc
Q 015968          184 GAFLC---ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLA-GNPLW  259 (397)
Q Consensus       184 ~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~~  259 (397)
                      +.+++   +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++++++.+. .....
T Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  183 (438)
T 3o7q_A          104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPH  183 (438)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999   888999999999999999999999999999999999999999999999999999999999999887 54233


Q ss_pred             ------------------------hHHHHHHhHHHHHHHHHHhcc--CCCChHHHHHcCCHHHHHHHHHHHhCCcchHHH
Q 015968          260 ------------------------WRTMFGLAAIPSILLALGMGL--SPESPRWLFQQGKKSEAEKSIQTLYGKERVSEV  313 (397)
Q Consensus       260 ------------------------w~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (397)
                                              ||+.|++.+++.++..++.++  .||+++.   ++                     
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~---------------------  239 (438)
T 3o7q_A          184 QSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NH---------------------  239 (438)
T ss_dssp             CCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CC---------------------
T ss_pred             ccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cc---------------------
Confidence                                    999998877776555544333  3544320   00                     


Q ss_pred             HHHHHhhcCCCCCCccchhhhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHH-HHHc-CCChh--HHHHHHHHHHHH
Q 015968          314 MLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSV-FRSV-GIESD--VAASALVGAANV  389 (397)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~--~~~~~~~~~~~~  389 (397)
                            +++++++.+..++++++++..+...+...+...    ....+..|.|.+ +++. |++..  .....+..++.+
T Consensus       240 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  309 (438)
T 3o7q_A          240 ------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFF  309 (438)
T ss_dssp             ------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred             ------ccccccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHH
Confidence                  001111123456677777766665554443333    245667788888 8776 88875  444555566666


Q ss_pred             Hhhhhc
Q 015968          390 FGNYSI  395 (397)
Q Consensus       390 ~g~~~~  395 (397)
                      +|.+++
T Consensus       310 ~~~~~~  315 (438)
T 3o7q_A          310 IGRFTG  315 (438)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.94  E-value=2.6e-26  Score=219.82  Aligned_cols=275  Identities=14%  Similarity=0.092  Sum_probs=202.5

Q ss_pred             chHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhH
Q 015968          100 GVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAV  179 (397)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~  179 (397)
                      +..+..+..+++..+..+++...+.+..|.+.+++ .+..+.  +++.+++.+++.++.+++|+++||+|||++++++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~  100 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  100 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence            34456667777778888888888888999999999 998888  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh----hchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCC
Q 015968          180 PLAAGAFLCAT----AQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAG  255 (397)
Q Consensus       180 ~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  255 (397)
                      +.+++.+++++    +++++.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|.+++|++++.+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  180 (451)
T 1pw4_A          101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  180 (451)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999    99999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             CCcc-hHHHHHHhHHHHHHHHH-HhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCC-CCccchh
Q 015968          256 NPLW-WRTMFGLAAIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSA-EPEAGWF  332 (397)
Q Consensus       256 ~~~~-w~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  332 (397)
                      . .+ ||+.|++.+++.++..+ ..+++||+|+....+.+.+.          +++.++   +.+++.+++. .++..++
T Consensus       181 ~-~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~~~~~~~  246 (451)
T 1pw4_A          181 W-FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY----------KNDYPD---DYNEKAEQELTAKQIFMQ  246 (451)
T ss_dssp             H-TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT----------CCC----------------CCTHHHHH
T ss_pred             H-hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh----------cccccc---cchhhhhcccccccchHH
Confidence            5 66 99999998888766544 44567887653211110000          000000   0000000010 1111135


Q ss_pred             hhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH-cCCChh--HHHHHHHHHHHHHhhhhc
Q 015968          333 DLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESD--VAASALVGAANVFGNYSI  395 (397)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~  395 (397)
                      ++++++..+...+...+    ...+.+.+..|.|.++++ .|++..  .....+.+++.+++.+++
T Consensus       247 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  308 (451)
T 1pw4_A          247 YVLPNKLLWYIAIANVF----VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLC  308 (451)
T ss_dssp             HTSSCHHHHHHHHHHHH----HHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666544443333332    233456677889999887 688875  455556666666666543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.92  E-value=2.7e-24  Score=201.03  Aligned_cols=247  Identities=18%  Similarity=0.183  Sum_probs=193.0

Q ss_pred             HHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHH
Q 015968          108 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFL  187 (397)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~  187 (397)
                      ++++..+...+....+.+..|.+.+++|.+..+.  +++.+.+.+++.++.+++|+++||+|||++++++.++.+++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            3455566666677777888999999999999888  99999999999999999999999999999999999999999999


Q ss_pred             HHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHh
Q 015968          188 CATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA  267 (397)
Q Consensus       188 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~  267 (397)
                      .+++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|.+++|.+++.+.+. .+||+.|++.
T Consensus        82 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~  160 (375)
T 2gfp_A           82 AVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-WNWRACYLFL  160 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-HHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-ccHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998876 7999999988


Q ss_pred             HHHHHHHHH-HhccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchhhhhccchhHHHHHH
Q 015968          268 AIPSILLAL-GMGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVG  346 (397)
Q Consensus       268 ~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (397)
                      +++.++..+ ..+++||+++..   +                              ++++.+.+++++++++..+...+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~---~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  207 (375)
T 2gfp_A          161 LVLCAGVTFSMARWMPETRPVD---A------------------------------PRTRLLTSYKTLFGNSGFNCYLLM  207 (375)
T ss_dssp             HHHHHHHHCCCCCSSCCCSTTT---C------------------------------CCCCTTTCSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcccCCCC---c------------------------------ccccHHHHHHHHhcCcchHHHHHH
Confidence            888776665 445567765410   0                              001223445667776555444443


Q ss_pred             HHHHHHHHhhhhHHHHHhHHHHHHH-cCCChh--HHHHHHHHHHHHHhhhh
Q 015968          347 AALFLFQQLAGINAVVYYSTSVFRS-VGIESD--VAASALVGAANVFGNYS  394 (397)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~  394 (397)
                      ..+.    ......+..+.|.++++ .|++..  .......+++.+++.++
T Consensus       208 ~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~  254 (375)
T 2gfp_A          208 LIGG----LAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWF  254 (375)
T ss_dssp             HHHH----HHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3332    22345666777777766 566654  34444555555555544

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.85  E-value=5e-20  Score=178.34  Aligned_cols=153  Identities=20%  Similarity=0.131  Sum_probs=137.7

Q ss_pred             hhhHHHHHHH-----hCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcc-cchHHHHHHhhHHHHHHHHHHHhhchHHHH
Q 015968          124 NGALEYLAKD-----LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADK-FGRTRTFQLDAVPLAAGAFLCATAQSVQTM  197 (397)
Q Consensus       124 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  197 (397)
                      ....+++.++     +|.+..+.  +++.+++.++..++++++|+++|| +|||++++++.++.+++.++++++++++.+
T Consensus        34 ~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (491)
T 4aps_A           34 AILLYYMWFLISTGDLHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASAL  111 (491)
T ss_dssp             HHHHHHHHHHHHHTSCCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHH
T ss_pred             HHHHHHHHhccchhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3456677776     99999888  999999999999999999999999 899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhcccCccc--chhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHH
Q 015968          198 IIGRVLAGIGIGISSAIVPLYISEISPTEI--RGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLA  275 (397)
Q Consensus       198 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  275 (397)
                      +++|++.|++.+...+...++++|++|+++  |+.++++++.+..+|.+++|.+++.+.+. .+||+.|++.++..++.+
T Consensus       112 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~  190 (491)
T 4aps_A          112 FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA-AGYHVAFSLAAIGMFIGL  190 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988  67788889999999999999999998876 789999999877766555


Q ss_pred             HHhc
Q 015968          276 LGMG  279 (397)
Q Consensus       276 ~~~~  279 (397)
                      +..+
T Consensus       191 ~~~~  194 (491)
T 4aps_A          191 LVYY  194 (491)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.76  E-value=1.9e-17  Score=161.58  Aligned_cols=154  Identities=19%  Similarity=0.201  Sum_probs=137.3

Q ss_pred             hhhHHHHHHHhC------CCchhhHHHHHHHHHHHHHHHHHHhhhhhhccc-chHHHHHHhhHHHHHHHHHHHhhc-hHH
Q 015968          124 NGALEYLAKDLG------IAENTVLQGWIVSSLLAGATVGSFTGGSLADKF-GRTRTFQLDAVPLAAGAFLCATAQ-SVQ  195 (397)
Q Consensus       124 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~  195 (397)
                      ....+++.+++|      ++..+.  +++.+++.++..++.+++|+++||+ |||++++++.++.+++.+++++++ +++
T Consensus        33 ~~l~~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  110 (524)
T 2xut_A           33 NILTPFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ  110 (524)
T ss_dssp             HHHHHHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred             HHHHHHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            335567788899      898888  9999999999999999999999999 999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhH---HHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHH
Q 015968          196 TMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSV---NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI  272 (397)
Q Consensus       196 ~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~  272 (397)
                      .++++|++.|++.+...+...+++.|++|+++|+++.+.   ++.+..+|.+++|.+++.+.+. .+|++.|++.+++.+
T Consensus       111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~f~~~~~~~~  189 (524)
T 2xut_A          111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-FGAAVAFGIPGVLMF  189 (524)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-SCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999876666   8889999999999999988765 789999998888776


Q ss_pred             HHHHHhcc
Q 015968          273 LLALGMGL  280 (397)
Q Consensus       273 ~~~~~~~~  280 (397)
                      +.++..++
T Consensus       190 ~~~~~~~~  197 (524)
T 2xut_A          190 VATVFFWL  197 (524)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHH
Confidence            65554443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.61  E-value=1.3e-16  Score=151.10  Aligned_cols=155  Identities=14%  Similarity=0.084  Sum_probs=106.3

Q ss_pred             hHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHH---HHHhhchHH-HHHHHH
Q 015968          126 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAF---LCATAQSVQ-TMIIGR  201 (397)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~---~~~~~~~~~-~~~~~r  201 (397)
                      ...++++++|++..+.  +++.+.+.+++.++++++|+++||+|||++++++.++.+++..   ...+.+... .++..+
T Consensus        30 ~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (417)
T 2cfq_A           30 FPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGS  107 (417)
T ss_dssp             HHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHH
T ss_pred             HHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445667799999888  9999999999999999999999999999999988877655321   112222111 133445


Q ss_pred             HHHHHhhhhhhhhhhhhhhcccCc--ccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhc
Q 015968          202 VLAGIGIGISSAIVPLYISEISPT--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMG  279 (397)
Q Consensus       202 ~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~  279 (397)
                      ++.|++.+..++.....+.++.++  ++|+...+....+..+|..++|.+++.+.+  .+|++.|++.++..++..+..+
T Consensus       108 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~--~~~~~~f~~~~~~~~~~~~~~~  185 (417)
T 2cfq_A          108 IVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--INNQFVFWLGSGCALILAVLLF  185 (417)
T ss_dssp             HGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH--HCSHHHHTTTTTTTTTHHHHSC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHH
Confidence            555555544444444444444433  345777777777778888999999888765  4799999887776655555555


Q ss_pred             cCCCC
Q 015968          280 LSPES  284 (397)
Q Consensus       280 ~~~e~  284 (397)
                      +.+|+
T Consensus       186 ~~~~~  190 (417)
T 2cfq_A          186 FAKTD  190 (417)
T ss_dssp             SSCCC
T ss_pred             HcCcc
Confidence            55443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.56  E-value=2.4e-14  Score=136.57  Aligned_cols=153  Identities=17%  Similarity=0.130  Sum_probs=128.9

Q ss_pred             hhHHHHHHH-hCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhccc--chHHHHHHhhHHHH-HHHHHHHhh--chHHHHH
Q 015968          125 GALEYLAKD-LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF--GRTRTFQLDAVPLA-AGAFLCATA--QSVQTMI  198 (397)
Q Consensus       125 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~~~  198 (397)
                      ...|.+.++ +|.+..+.  +++.+...++..++.++.|+++||+  |||+.+.++.++.. ++.++..+.  .+.+.++
T Consensus       273 ~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (451)
T 1pw4_A          273 DWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM  350 (451)
T ss_dssp             HHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence            344544444 89998887  9999999999999999999999999  99999988877766 666666555  3777788


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHH-HHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHH
Q 015968          199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (397)
Q Consensus       199 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~  277 (397)
                      +..++.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+. .||++.|++.+++.++..++
T Consensus       351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~  429 (451)
T 1pw4_A          351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSILAVIL  429 (451)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHH
Confidence            8888999998888888889999999999999999999999999 999999999998876 78999999888877766655


Q ss_pred             hcc
Q 015968          278 MGL  280 (397)
Q Consensus       278 ~~~  280 (397)
                      .++
T Consensus       430 ~~~  432 (451)
T 1pw4_A          430 LIV  432 (451)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.46  E-value=6.8e-13  Score=126.01  Aligned_cols=150  Identities=13%  Similarity=0.011  Sum_probs=122.4

Q ss_pred             hHHH-HHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHH
Q 015968          126 ALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLA  204 (397)
Q Consensus       126 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  204 (397)
                      ...+ +.+.+|.+..+.  +++.+.+.++..++.++.|+++||+|||+++.++.++.+++.++..+.++.+.++.. ++.
T Consensus       281 ~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  357 (438)
T 3o7q_A          281 LIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLC  357 (438)
T ss_dssp             HHHHHHHHSTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHH
T ss_pred             HHHHhhhccCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHH
Confidence            4455 555569998888  999999999999999999999999999999999999999999888888887665544 888


Q ss_pred             HHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcc-hHHHHHHhHHHHHHHHHHhccC
Q 015968          205 GIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLW-WRTMFGLAAIPSILLALGMGLS  281 (397)
Q Consensus       205 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-w~~~~~~~~~~~~~~~~~~~~~  281 (397)
                      |++.+..++....+..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+. .| +++.|++.+++.++.++..++.
T Consensus       358 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~  432 (438)
T 3o7q_A          358 SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA-AGNIPTAELIPALCFAVIFIFARFR  432 (438)
T ss_dssp             HHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH-HTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999976 888888776 5568999999999998876 56 8888887666555554444433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.41  E-value=6.5e-13  Score=125.66  Aligned_cols=141  Identities=10%  Similarity=0.034  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhccc
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS  223 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~  223 (397)
                      +++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+++|.+
T Consensus       262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  341 (417)
T 2cfq_A          262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            67777888888899999999999999999999998888888777777788888888888888887777777788999999


Q ss_pred             CcccchhhhhH-HHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHh-ccCCCCh
Q 015968          224 PTEIRGALGSV-NQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGM-GLSPESP  285 (397)
Q Consensus       224 ~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~e~~  285 (397)
                      |++.|+++.+. ++....+|.+++|.+++.+.+. .||...|++.+++.++..++. ++.||++
T Consensus       342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-SHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            99999999888 4778889999999999988765 678888888887776666554 3456543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.41  E-value=4e-12  Score=122.64  Aligned_cols=163  Identities=18%  Similarity=0.063  Sum_probs=114.8

Q ss_pred             hchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhh-----chHHH
Q 015968          122 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATA-----QSVQT  196 (397)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~  196 (397)
                      .+....+.+.+..+.+....  ........+...++.++.+++.||+|||+.++.+..+.+++.+..+..     ++...
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  372 (491)
T 4gc0_A          295 VVLYYAPEVFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA  372 (491)
T ss_dssp             HHHHHHHHHHHHSSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHhcchHHHHhcCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHH
Confidence            34446677888888877666  566667778888999999999999999999999988888877665432     12222


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCC-----CcchHHHHHHhHHHH
Q 015968          197 MIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGN-----PLWWRTMFGLAAIPS  271 (397)
Q Consensus       197 ~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~w~~~~~~~~~~~  271 (397)
                      ++..-+..+....+..++...+.+|.+|.+.|++++++......+|.++++.+.+.+.+.     ..++.+.|++.++++
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~  452 (491)
T 4gc0_A          373 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG  452 (491)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            222222222222233456678999999999999999999999999988887776655432     124556777777777


Q ss_pred             HHHHH-HhccCCCChH
Q 015968          272 ILLAL-GMGLSPESPR  286 (397)
Q Consensus       272 ~~~~~-~~~~~~e~~~  286 (397)
                      ++..+ .++++|||..
T Consensus       453 ~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          453 VLAALFMWKFVPETKG  468 (491)
T ss_dssp             HHHHHHHHHHCCCCTT
T ss_pred             HHHHHHHHheecCCCC
Confidence            66554 4567899954

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.33  E-value=6.9e-12  Score=121.02  Aligned_cols=150  Identities=13%  Similarity=0.022  Sum_probs=116.6

Q ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHH-----HhhHHHHHHHHHHHhhc---------
Q 015968          127 LEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQ-----LDAVPLAAGAFLCATAQ---------  192 (397)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~-----~~~~~~~~~~~~~~~~~---------  192 (397)
                      ..++.+.++.+..+.  +++.+...++..++.++.|+++||+|||+...     .+.++.+++.++..+..         
T Consensus       307 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (491)
T 4aps_A          307 ATFAAERVDSSWFPV--SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKV  384 (491)
T ss_dssp             HHHHHHSCCCSSSCS--GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTC
T ss_pred             HHHHHHHhccCccCH--HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            334555567665555  77788888889999999999999999986654     66677777666555532         


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHH
Q 015968          193 SVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSI  272 (397)
Q Consensus       193 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~  272 (397)
                      +.+.+++..++.|++.+...+....++.|.+|++.|+.++++.+....+|..+++.+.+.+.+.  ++.+.|++.+++.+
T Consensus       385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--~~~~~~~~~~~~~~  462 (491)
T 4aps_A          385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--SEVAYFSYFGLGSV  462 (491)
T ss_dssp             CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--STTHHHHHTHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHH
Confidence            6677778889999999998999999999999999999999999999999999999999887653  56677777777776


Q ss_pred             HHHHHhcc
Q 015968          273 LLALGMGL  280 (397)
Q Consensus       273 ~~~~~~~~  280 (397)
                      +..++.++
T Consensus       463 ~~~~~~~~  470 (491)
T 4aps_A          463 VLGIVLVF  470 (491)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            65554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.01  E-value=1.2e-10  Score=108.26  Aligned_cols=133  Identities=17%  Similarity=0.128  Sum_probs=102.2

Q ss_pred             HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHH-HHHHHH--HHHh--hchHHHHHHHHHH
Q 015968          129 YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP-LAAGAF--LCAT--AQSVQTMIIGRVL  203 (397)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~-~~~~~~--~~~~--~~~~~~~~~~r~l  203 (397)
                      ++++.+|.+..+.  +++.+...++..++.++.+++.||+|++.  ..+..+ ..++..  ....  .++.+.+++..++
T Consensus       225 ~~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  300 (375)
T 2gfp_A          225 LMGAVLGLSSMTV--SILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAAL  300 (375)
T ss_dssp             SSHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHH
Confidence            4455588877777  89999999999999999999999999833  222222 222221  2222  2467777788889


Q ss_pred             HHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHh
Q 015968          204 AGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLA  267 (397)
Q Consensus       204 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~  267 (397)
                      .|++.+...+....++.|.+| ++|+++.++.+....+|..+++.+.+.+.+. .+|+..+++.
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~~~~~~~~~~  362 (375)
T 2gfp_A          301 FFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT-GQGSLGLLMT  362 (375)
T ss_dssp             HHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccHHHHHH
Confidence            999999999999999999998 7899999999999999999998888887654 5677766553

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.88  E-value=6.5e-09  Score=100.98  Aligned_cols=137  Identities=17%  Similarity=0.064  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhh----cccch----HHHHHHhhHHHHHHHHHHHhh---------chHHHHHHHHHHHHH
Q 015968          144 GWIVSSLLAGATVGSFTGGSLA----DKFGR----TRTFQLDAVPLAAGAFLCATA---------QSVQTMIIGRVLAGI  206 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~----d~~Gr----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G~  206 (397)
                      +++.....++..++.++.+++.    +|.|+    ++.+.++.++.+++.++.++.         .+.+.+++..++.|+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  417 (524)
T 2xut_A          338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF  417 (524)
T ss_dssp             HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence            5666666666667777777664    55543    356677777777777766653         366777888899999


Q ss_pred             hhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhcCCCC-cch---------HHHHHHhHHHHHHHHH
Q 015968          207 GIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPLAGNP-LWW---------RTMFGLAAIPSILLAL  276 (397)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~w---------~~~~~~~~~~~~~~~~  276 (397)
                      +.+...+....++.|.+|+++|++++++++....+|..+++.+.+.+.+.. .+|         +..|++.+++.++..+
T Consensus       418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (524)
T 2xut_A          418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAI  497 (524)
T ss_dssp             HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999887631 124         3336666666655555


Q ss_pred             Hhcc
Q 015968          277 GMGL  280 (397)
Q Consensus       277 ~~~~  280 (397)
                      +.++
T Consensus       498 ~~~~  501 (524)
T 2xut_A          498 VFAL  501 (524)
T ss_dssp             HHC-
T ss_pred             HHHH
Confidence            4443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	397
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-09
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	2e-06
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	4e-05

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 8/187 (4%)

Query: 106 VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLA 165
                 G   +         A+ YL  + G +   +  G+ +S +        F  GS++
Sbjct: 27  FLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL--GFALSGISIAYGFSKFIMGSVS 83

Query: 166 DKFGRTRTFQLDAVPLAAGAFLC----ATAQSVQTMIIGRVLAGIGIGISSAIVPLYISE 221
           D+           +  AA             S+  M +   L G   G+        +  
Sbjct: 84  DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 143

Query: 222 ISPTEIRGALGSVNQLFICVG-ILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL 280
               + RG + SV      VG  +  L+  L +A    W   ++  A    ++      +
Sbjct: 144 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 203

Query: 281 SPESPRW 287
             ++P+ 
Sbjct: 204 MRDTPQS 210

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 22/198 (11%), Positives = 50/198 (25%), Gaps = 8/198 (4%)

Query: 110 CLGAILFGYHLGVVNGAL-EYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKF 168
            L    + + +G        +L     I+++    G I +++   + +     G L+DK 
Sbjct: 13  GLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKL 70

Query: 169 GRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIG-----ISSAIVPLYISEIS 223
           G  +        +               +    ++  I  G       +A  P   + I 
Sbjct: 71  GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130

Query: 224 PTEIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPE 283
               R                A   + + +          +  +    IL  L      +
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190

Query: 284 SPRWLFQQGKKSEAEKSI 301
           +P              + 
Sbjct: 191 APSSATVANAVGANHSAF 208

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 26/290 (8%), Positives = 72/290 (24%), Gaps = 2/290 (0%)

Query: 1   MQASTYAIKASVCFDARNRRRACVLAAGFANTRSVALNCNFTSNNSICMRDMGMKLTRAT 60
              +            R+               ++  +               +    A 
Sbjct: 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCAL 178

Query: 61  QGVETLFRSTVKPRSVKAQASAGDIEEATPFKPQAKKSSGVVLPFVGVACLGAILFGYHL 120
                LF +     S    A+A     +      A +       +     +  +   Y +
Sbjct: 179 ILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV 238

Query: 121 GVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVP 180
                A  + +      + T + G++ +          F    + ++ G      L    
Sbjct: 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTI 298

Query: 181 LAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRG-ALGSVNQLFI 239
           ++      + A S   ++I + L    +         YI+                  F 
Sbjct: 299 MSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFK 358

Query: 240 CVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGLSPESPRWLF 289
            + ++   V    +  + + ++  + +  + ++   L    +   P  L 
Sbjct: 359 QLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	397
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.63
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.54
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.48

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.1e-26  Score=217.57  Aligned_cols=279  Identities=14%  Similarity=0.041  Sum_probs=195.5

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhHhhchhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHh
Q 015968           98 SSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLD  177 (397)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~  177 (397)
                      .++.+|.++..++++.+..+++...++.+.|.+. |+|++.++.  |++.+++.++++++++++|+++||+|||++++++
T Consensus        19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~   95 (447)
T d1pw4a_          19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   95 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            3344677777777888888777777777888775 689999999  9999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhh----chHHHHHHHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHHHHHHHHHHhhhc
Q 015968          178 AVPLAAGAFLCATA----QSVQTMIIGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICVGILAALVAGLPL  253 (397)
Q Consensus       178 ~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  253 (397)
                      .++.+++.++++++    ++++.++++|++.|++.+..++....++.|++|+++|++++++.+.+..+|.++++++++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_          96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence            99999999888776    47788999999999999999999999999999999999999999999999999999988876


Q ss_pred             CCCCcchHHHHHHhHHHHHHHHHH-hccCCCChHHHHHcCCHHHHHHHHHHHhCCcchHHHHHHHHhhcCCCCCCccchh
Q 015968          254 AGNPLWWRTMFGLAAIPSILLALG-MGLSPESPRWLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWF  332 (397)
Q Consensus       254 ~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (397)
                      .....+||+.|++.+++.++..++ .++.+++|+........+.            +.+...+..++..++...++...+
T Consensus       176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  243 (447)
T d1pw4a_         176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY------------KNDYPDDYNEKAEQELTAKQIFMQ  243 (447)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT------------CCC-------------CCTHHHHH
T ss_pred             hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh------------hhhcccchhhccccccchhhHHHH
Confidence            655478999999888877665554 4445555542111100000            000000000011111112223344


Q ss_pred             hhhccchhHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH-cCCChh--HHHHHHHHHHHHHhhhhc
Q 015968          333 DLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS-VGIESD--VAASALVGAANVFGNYSI  395 (397)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~~g~~~~  395 (397)
                      ..++++..+.+.+.    .+......+.+..|.+.++.+ .|++..  .....+..+..++|.+++
T Consensus       244 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (447)
T d1pw4a_         244 YVLPNKLLWYIAIA----NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLC  305 (447)
T ss_dssp             HTSSCHHHHHHHHH----HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCchHHHHHHH----hhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhh
Confidence            55555443333332    222333356677788888776 577765  445555666666666543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=1.5e-15  Score=139.70  Aligned_cols=163  Identities=15%  Similarity=0.047  Sum_probs=112.7

Q ss_pred             HhhchhhHH-HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHH
Q 015968          120 LGVVNGALE-YLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMI  198 (397)
Q Consensus       120 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  198 (397)
                      .+...+..| ++.+++|++..+.  |++.+++.+++.++++++|+++||+|||++++++.++..++.++..+..+.....
T Consensus        23 ~~~~~~~l~~~l~~~~g~s~~~~--g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  100 (417)
T d1pv7a_          23 MGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ  100 (417)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            334445555 5778899999988  9999999999999999999999999999999999999999888888776655543


Q ss_pred             ----HHHHHHHHhhhhhhhhhhhhhhcccCc--ccchhhhhHHHHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHH-
Q 015968          199 ----IGRVLAGIGIGISSAIVPLYISEISPT--EIRGALGSVNQLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPS-  271 (397)
Q Consensus       199 ----~~r~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~-  271 (397)
                          +.+++.+.+.+...........+..++  +++....+........+..+++.+++.+.+.  +|++.++...... 
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~  178 (417)
T d1pv7a_         101 YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLGSGCAL  178 (417)
T ss_dssp             TTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc--cccccccchhhHHH
Confidence                334444444444444333333333332  2335666777777888888999988887653  4555555544444 


Q ss_pred             HHHHHHhccCCCChH
Q 015968          272 ILLALGMGLSPESPR  286 (397)
Q Consensus       272 ~~~~~~~~~~~e~~~  286 (397)
                      +...+..++.+++++
T Consensus       179 ~~~~~~~~~~~~~~~  193 (417)
T d1pv7a_         179 ILAVLLFFAKTDAPS  193 (417)
T ss_dssp             HHHHHHHSSCCCSCS
T ss_pred             HHHHHHHHHhccccc
Confidence            445555555666543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=4.5e-15  Score=136.50  Aligned_cols=136  Identities=10%  Similarity=0.060  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhhhhhhhhccc
Q 015968          144 GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLAGIGIGISSAIVPLYISEIS  223 (397)
Q Consensus       144 ~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~  223 (397)
                      +.......++..++..+.+++.||+|+|+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+....++.|.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  341 (417)
T d1pv7a_         262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            67777788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccchhhhhHH-HHHHHHHHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHHhcc
Q 015968          224 PTEIRGALGSVN-QLFICVGILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALGMGL  280 (397)
Q Consensus       224 ~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~  280 (397)
                      |++.|++..++. +....+|..++|.+.|.+.+. .||++.|++.+++.++..++.++
T Consensus       342 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~-~g~~~~~~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999975 556789999999999998877 78999999888877666554433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.7e-13  Score=127.91  Aligned_cols=153  Identities=18%  Similarity=0.119  Sum_probs=117.2

Q ss_pred             hhhHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHhhHHHHHHHHHHH-----hhchHHHHH
Q 015968          124 NGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA-----TAQSVQTMI  198 (397)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~Grr~~l~~~~~~~~~~~~~~~-----~~~~~~~~~  198 (397)
                      .....++.+.++.+..+.  ++..+.+.++..++.++.|+++||++||+......+...+..+...     ...+.+..+
T Consensus       270 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (447)
T d1pw4a_         270 DWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM  347 (447)
T ss_dssp             HHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHH
T ss_pred             hhhhhhcccccccccchh--hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHH
Confidence            334556667788888877  8999999999999999999999999987654444333333222221     135677778


Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhcccCcccchhhhhHHHHHHHH-HHHHHHHHhhhcCCCCcchHHHHHHhHHHHHHHHHH
Q 015968          199 IGRVLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICV-GILAALVAGLPLAGNPLWWRTMFGLAAIPSILLALG  277 (397)
Q Consensus       199 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~  277 (397)
                      ++.++.|++.++..+....+..|.+|++.|+++.|+.+....+ |.+++|++.+.+.+. .||+..|++.+++.++.+++
T Consensus       348 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~  426 (447)
T d1pw4a_         348 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGWDGGFMVMIGGSILAVIL  426 (447)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHH
Confidence            8888889988888888889999999999999999998877666 567789998888877 78999988877766665554


Q ss_pred             hc
Q 015968          278 MG  279 (397)
Q Consensus       278 ~~  279 (397)
                      .+
T Consensus       427 ~~  428 (447)
T d1pw4a_         427 LI  428 (447)
T ss_dssp             HH
T ss_pred             HH
Confidence            43