Citrus Sinensis ID: 015971

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIANSEEDEVSYEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREVRNSFIDSPLFCLVEHISN
cccccccccEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEEEcccccccccccccEEEEEEcccEEEEEEEEEEEcccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHcc
ccccccccEEEEEccccEEEEEccccccccccccccccccccccEEEccccccccccccccccEccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHccccccccccccccccccccccEEEEEEEEEcccccccccccHHHccccHHHHHcccEEEEEEcccccHHHHccccEEEEEEEccccEEEEEEEEEEccccEEEEccccHcccccccccccccHHHHHHHHHHHHHHHHHcc
MASIRSLSFMVETKADSYVVLFsknqyrpsssfsafrpkkspifaflnnsvsgfsfrsnksghllkVKHVkatgagfvedesgnepedsLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSdianseedevsyeerensfsdldftstsssnvvenqngiipsssgdhstaneapklqssaanrgpdaggkesenrlspekesididsskllkgtdtqstwsdelpsflsrtavisspkeerhekdldqvqqidsepiepkteeakppplaganVMNVILVAAecgpwsktgglgdvagALPKALARRGhrvmvvaphygnyaepqdtgirkryrvdRQDIEVAYFQAYIdgvdfvfldsplfrhlgnniygggrevrnsfidsplFCLVEHISN
masirslsfmvETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATgagfvedesgnepEDSLQATIEKSKKVLAMQKQLLQQISErrklvssiksdianseedevsyEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTANEAPKLQssaanrgpdaggkesenrlspekesididsskllkgtdtqstwsdelpsflsrtavisspkeerhekdldqvqqidsepiepkteeakppplAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVaphygnyaepqdtgirKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREVRNSFIDSPLFCLVEHISN
MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIANseedevsyeerensfsdldftstsssnVVENQNGIIPSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREVRNSFIDSPLFCLVEHISN
********FMVETKADSYVVLFSKN****************PIFAFLNNSVSGFSFRSNKSGHLLKVKHVKAT********************************************************************************************************************************************************************************************************GANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREVRNSFIDSPLFCLVEH***
******L****ETKADSYV*********************SPIFAFLNNSVSGF***********************************LQATIEKSKKVLAMQKQL***************************************************************************************************************************************************************************NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREVRNSFIDSPLFCLVEHISN
MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFVE**********LQATIEKSKKVLAMQKQLLQQISERRKLVSSIKS*******************SDLDFTSTSSSNVVENQNGIIPS****************************************IDIDSSKLLKGTDTQSTWSDELPSFLSRTAVIS*************VQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREVRNSFIDSPLFCLVEHISN
****RSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGF******NEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSI*****************************************************************************************************************************************************PLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREVRNSFIDSPLFCLVEHISN
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIANSEEDEVSYEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGREVRNSFIDSPLFCLVEHISN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query397 2.2.26 [Sep-21-2011]
Q43847 767 Granule-bound starch synt N/A no 0.876 0.453 0.438 3e-76
Q9MAC8 792 Starch synthase 2, chloro yes no 0.821 0.411 0.452 9e-73
Q43093 752 Granule-bound starch synt N/A no 0.874 0.461 0.449 5e-68
Q0DDE3 810 Soluble starch synthase 2 yes no 0.294 0.144 0.719 7e-46
P0C586 810 Soluble starch synthase 2 N/A no 0.294 0.144 0.719 8e-46
Q6Z2T8 694 Soluble starch synthase 2 no no 0.312 0.178 0.671 6e-43
Q7XE48 749 Soluble starch synthase 2 no no 0.329 0.174 0.601 4e-42
Q9FNF2 652 Starch synthase 1, chloro no no 0.372 0.226 0.385 4e-19
P93568 641 Soluble starch synthase 1 N/A no 0.294 0.182 0.426 7e-18
Q43784 608 Granule-bound starch synt N/A no 0.287 0.187 0.446 9e-16
>sp|Q43847|SSY2_SOLTU Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3 Back     alignment and function desciption
 Score =  285 bits (730), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 178/406 (43%), Positives = 234/406 (57%), Gaps = 58/406 (14%)

Query: 19  VVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFV 78
           ++L S NQ+ P+    A RPKK  +               +    + ++K VKATG    
Sbjct: 5   ILLHSGNQFHPNLPLLALRPKKLSLI------------HGSSREQMWRIKRVKATGENSG 52

Query: 79  EDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIANSEEDEVSYEER 138
           E  S +E  D+LQ TIEKSKKVLAMQ+ LLQQI+ERRK+VSSIKS +AN++    +Y+  
Sbjct: 53  EAASADESNDALQVTIEKSKKVLAMQQDLLQQIAERRKVVSSIKSSLANAKG---TYDGG 109

Query: 139 ENSFSDLDFT-----------STSSSNVVENQNGIIPSSSGD---------HSTANE-AP 177
             S SD+D             ST+++ + +      P+ S D            A+E AP
Sbjct: 110 SGSLSDVDIPDVDKDYNVTVPSTAATPITDVDKNTPPAISQDFVESKREIKRDLADERAP 169

Query: 178 KLQSSAANRGPDAGGKESENRL---------SPEKESIDIDSSKLL---KGTDTQSTWSD 225
            L  S+           S  R          S ++  +D++S K L    G   QS    
Sbjct: 170 PLSRSSITASSQISSTVSSKRTLNVPPETPKSSQETLLDVNSRKSLVDVPGKKIQSY--- 226

Query: 226 ELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAA 285
            +PS    ++  +S  E+R+E       + + E  +P   + KPPPLAG NVMN+ILVA+
Sbjct: 227 -MPSLRKESS--ASHVEQRNENLEGSSAEANEETEDPVNIDEKPPPLAGTNVMNIILVAS 283

Query: 286 ECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEV 345
           EC PWSKTGGLGDVAGALPKALARRGHRVMVVAP Y NY EPQD+G+RK Y+VD QD+EV
Sbjct: 284 ECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPRYDNYPEPQDSGVRKIYKVDGQDVEV 343

Query: 346 AYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGR-EVRNSFIDSPLFC 390
            YFQA+IDGVDFVF+DS +FRH+GNNIYGG R ++    +   LFC
Sbjct: 344 TYFQAFIDGVDFVFIDSHMFRHIGNNIYGGNRVDILKRMV---LFC 386
Accounts for only 10 to 15% of the total soluble starch synthase activity in tubers.
Solanum tuberosum (taxid: 4113)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 1
>sp|Q9MAC8|SSY2_ARATH Starch synthase 2, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS2 PE=2 SV=1 Back     alignment and function description
>sp|Q43093|SSG2_PEA Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|Q0DDE3|SSY23_ORYSJ Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-3 PE=1 SV=1 Back     alignment and function description
>sp|P0C586|SSY23_ORYSI Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=SSII-3 PE=1 SV=1 Back     alignment and function description
>sp|Q6Z2T8|SSY22_ORYSJ Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2 Back     alignment and function description
>sp|Q7XE48|SSY21_ORYSJ Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2 Back     alignment and function description
>sp|Q9FNF2|SSY1_ARATH Starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS1 PE=2 SV=1 Back     alignment and function description
>sp|P93568|SSY1_SOLTU Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q43784|SSG1_MANES Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query397
225452843 772 PREDICTED: granule-bound starch synthase 0.962 0.494 0.533 1e-106
296082929 788 unnamed protein product [Vitis vinifera] 0.962 0.484 0.498 1e-102
6467503 751 granule bound starch synthase II precurs 0.926 0.490 0.543 1e-100
157169069 751 starch synthase isoform II [Manihot escu 0.926 0.490 0.543 1e-100
224141401 742 predicted protein [Populus trichocarpa] 0.906 0.485 0.544 4e-93
255582123 754 starch synthase, putative [Ricinus commu 0.929 0.489 0.502 4e-89
297828626 796 hypothetical protein ARALYDRAFT_477411 [ 0.828 0.413 0.485 9e-76
57015403 767 RecName: Full=Granule-bound starch synth 0.876 0.453 0.438 2e-74
351725391 774 starch synthase IIa-2 [Glycine max] gi|2 0.964 0.494 0.457 2e-72
351724957 757 starch synthase IIa-1 [Glycine max] gi|2 0.874 0.458 0.483 2e-72
>gi|225452843|ref|XP_002278470.1| PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/399 (53%), Positives = 272/399 (68%), Gaps = 17/399 (4%)

Query: 1   MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFS----- 55
           MAS+  +SF+ E  A     ++S    RP  SF  +R + SP  A   +S+ G+S     
Sbjct: 1   MASVGCVSFVTERAAS----IWSGRDRRPRFSFPVYRLRMSPGCAISKDSIFGYSREDCV 56

Query: 56  -FRSNKSGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISER 114
            F       +L  + V+A G G VE E G+  ED+  ATIEKSKKVLAMQ+ LLQQI+ER
Sbjct: 57  RFSLCSRRQVLGSRGVRARGEGSVEGEDGDRLEDAFDATIEKSKKVLAMQRDLLQQIAER 116

Query: 115 RKLVSSIKSDIANSEEDEVSYEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTAN 174
           RKLVSSIKS I N E++EVSY+ R++SF ++D TST  S   E+ NG I S +  HS A+
Sbjct: 117 RKLVSSIKSSIINPEDNEVSYKGRDSSFPNMDLTSTGDSGGDEDYNGGILSGNYVHSNAD 176

Query: 175 EAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRT 234
           + P   SSA +RG   G KE    LS E  S+D+++ K LK T  ++ WSD LPSFLS++
Sbjct: 177 KVPAALSSATSRGFGEGEKELGKDLSLENPSLDLEAPKQLKDTSPKTVWSDPLPSFLSKS 236

Query: 235 AVISSPKEERHEKDLDQV--QQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSK 292
              +SPKEE+ E D  ++  +++++E      E+ KPPPLAG NVMN+ILVAAEC PWSK
Sbjct: 237 VETASPKEEKQE-DFRELSSEEVNNEAAVSMGEDVKPPPLAGTNVMNIILVAAECAPWSK 295

Query: 293 TGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYI 352
           TGGLGDVAGALPKALARRGHRVMVVAP YGNYAE Q+TG+RK+Y+VD QD+EV YFQAYI
Sbjct: 296 TGGLGDVAGALPKALARRGHRVMVVAPRYGNYAEAQETGVRKKYKVDGQDMEVTYFQAYI 355

Query: 353 DGVDFVFLDSPLFRHLGNNIYGGGR-EVRNSFIDSPLFC 390
           DGVDFVF+DS +FRH+  NIYGG R ++    +   LFC
Sbjct: 356 DGVDFVFIDSHMFRHIEKNIYGGNRMDILKRMV---LFC 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296082929|emb|CBI22230.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|6467503|gb|AAF13168.1|AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] Back     alignment and taxonomy information
>gi|157169069|gb|ABV25894.1| starch synthase isoform II [Manihot esculenta] Back     alignment and taxonomy information
>gi|224141401|ref|XP_002324061.1| predicted protein [Populus trichocarpa] gi|222867063|gb|EEF04194.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255582123|ref|XP_002531856.1| starch synthase, putative [Ricinus communis] gi|223528506|gb|EEF30534.1| starch synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297828626|ref|XP_002882195.1| hypothetical protein ARALYDRAFT_477411 [Arabidopsis lyrata subsp. lyrata] gi|297328035|gb|EFH58454.1| hypothetical protein ARALYDRAFT_477411 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|57015403|sp|Q43847.3|SSY2_SOLTU RecName: Full=Granule-bound starch synthase 2, chloroplastic/amyloplastic; AltName: Full=Granule-bound starch synthase II; Short=GBSS-II; Short=SS II; Flags: Precursor gi|48927500|emb|CAA61241.2| soluble starch synthase II precursor [Solanum tuberosum] Back     alignment and taxonomy information
>gi|351725391|ref|NP_001235811.1| starch synthase IIa-2 [Glycine max] gi|221063672|gb|ACL98480.1| starch synthase IIa-2 precursor [Glycine max] Back     alignment and taxonomy information
>gi|351724957|ref|NP_001235796.1| starch synthase IIa-1 [Glycine max] gi|221063670|gb|ACL98479.1| starch synthase IIa-1 precursor [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query397
TAIR|locus:2102102 792 SS2 "starch synthase 2" [Arabi 0.551 0.276 0.539 4.4e-54
TAIR|locus:2037950 610 GBSS1 "granule bound starch sy 0.317 0.206 0.416 4.4e-18
UNIPROTKB|Q42968 609 WAXY "Granule-bound starch syn 0.289 0.188 0.448 7.8e-18
TAIR|locus:2169749 652 SS1 "starch synthase 1" [Arabi 0.372 0.226 0.403 2.1e-17
UNIPROTKB|Q9XHN9113 Q9XHN9 "Granule bound starch s 0.085 0.300 0.685 8.8e-07
TIGR_CMR|GSU_1023 501 GSU_1023 "glycogen synthase" [ 0.141 0.111 0.456 3.9e-06
TIGR_CMR|GSU_3257 484 GSU_3257 "glycogen synthase" [ 0.141 0.115 0.473 1e-05
TIGR_CMR|BA_5120 476 BA_5120 "glycogen synthase" [B 0.110 0.092 0.5 9.9e-05
TAIR|locus:2102102 SS2 "starch synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 559 (201.8 bits), Expect = 4.4e-54, P = 4.4e-54
 Identities = 123/228 (53%), Positives = 146/228 (64%)

Query:   164 PSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTW 223
             P    D +T N  P   SS      D   K S    SPEK S  + S      +   + W
Sbjct:   192 PQKPSDVAT-NGKP--WSSVVASSVDPPYKPSSVMTSPEKTSDPVTSPGKPSKSRAGAFW 248

Query:   224 SDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILV 283
             SD LPS+L++    S+ K E++ +    V    SE  EP  +E KPPPLAGANVMNVILV
Sbjct:   249 SDPLPSYLTKAPQTSTMKTEKYVEKTPDVAS--SETNEPGKDEEKPPPLAGANVMNVILV 306

Query:   284 AAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDI 343
             AAEC P+SKTGGLGDVAGALPK+LARRGHRVMVV P Y  YAE +D G+RKRY+V  QD+
Sbjct:   307 AAECAPFSKTGGLGDVAGALPKSLARRGHRVMVVVPRYAEYAEAKDLGVRKRYKVAGQDM 366

Query:   344 EVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGR-EVRNSFIDSPLFC 390
             EV YF A+IDGVDFVF+DSP FRHL NNIYGG R ++    +   LFC
Sbjct:   367 EVMYFHAFIDGVDFVFIDSPEFRHLSNNIYGGNRLDILKRMV---LFC 411
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0009011 "starch synthase activity" evidence=IMP
GO:0010021 "amylopectin biosynthetic process" evidence=IMP
GO:0001666 "response to hypoxia" evidence=RCA
GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA
GO:0019375 "galactolipid biosynthetic process" evidence=RCA
TAIR|locus:2037950 GBSS1 "granule bound starch synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q42968 WAXY "Granule-bound starch synthase 1, chloroplastic/amyloplastic" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
TAIR|locus:2169749 SS1 "starch synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XHN9 Q9XHN9 "Granule bound starch synthase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1023 GSU_1023 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3257 GSU_3257 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5120 BA_5120 "glycogen synthase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
TIGR02095 473 TIGR02095, glgA, glycogen/starch synthase, ADP-glu 9e-30
cd03791 476 cd03791, GT1_Glycogen_synthase_DULL1_like, This fa 1e-28
pfam08323 234 pfam08323, Glyco_transf_5, Starch synthase catalyt 5e-27
PRK00654 466 PRK00654, glgA, glycogen synthase; Provisional 5e-19
COG0297 487 COG0297, GlgA, Glycogen synthase [Carbohydrate tra 1e-15
PLN02939 977 PLN02939, PLN02939, transferase, transferring glyc 1e-06
PLN02316 1036 PLN02316, PLN02316, synthase/transferase 1e-05
PRK14099 485 PRK14099, PRK14099, glycogen synthase; Provisional 1e-05
>gnl|CDD|233724 TIGR02095, glgA, glycogen/starch synthase, ADP-glucose type Back     alignment and domain information 
 Score =  119 bits (301), Expect = 9e-30
 Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQ----DTGIR 333
           M V+ VAAE  P++KTGGL DV GALPKALA  GH V V+ P YG   +           
Sbjct: 1   MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVEL 60

Query: 334 KRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGRE 378
               V  + + V  F+  ++GV   F+D+P        IYG    
Sbjct: 61  VDLSVGPRTLYVKVFEGVVEGVPVYFIDNPSLFDRPGGIYGDDYP 105

This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 473
>gnl|CDD|99965 cd03791, GT1_Glycogen_synthase_DULL1_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>gnl|CDD|219794 pfam08323, Glyco_transf_5, Starch synthase catalytic domain Back     alignment and domain information
>gnl|CDD|234809 PRK00654, glgA, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|223374 COG0297, GlgA, Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups Back     alignment and domain information
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase Back     alignment and domain information
>gnl|CDD|237610 PRK14099, PRK14099, glycogen synthase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 397
PRK14099 485 glycogen synthase; Provisional 99.97
PRK14098 489 glycogen synthase; Provisional 99.96
PLN02939 977 transferase, transferring glycosyl groups 99.94
PF08323 245 Glyco_transf_5: Starch synthase catalytic domain; 99.94
TIGR02095 473 glgA glycogen/starch synthases, ADP-glucose type. 99.93
PLN02316 1036 synthase/transferase 99.9
PRK00654 466 glgA glycogen synthase; Provisional 99.88
cd03791 476 GT1_Glycogen_synthase_DULL1_like This family is mo 99.87
COG0297 487 GlgA Glycogen synthase [Carbohydrate transport and 99.84
TIGR02094 601 more_P_ylases alpha-glucan phosphorylases. This fa 97.91
cd04299 778 GT1_Glycogen_Phosphorylase_like This family is mos 97.4
PLN02871 465 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase 96.36
cd03802 335 GT1_AviGT4_like This family is most closely relate 96.13
PRK10307 412 putative glycosyl transferase; Provisional 95.77
cd03805 392 GT1_ALG2_like This family is most closely related 95.08
cd03794 394 GT1_wbuB_like This family is most closely related 93.99
PLN02846 462 digalactosyldiacylglycerol synthase 93.99
cd03801 374 GT1_YqgM_like This family is most closely related 93.71
PF13579160 Glyco_trans_4_4: Glycosyl transferase 4-like domai 93.36
cd03817 374 GT1_UGDG_like This family is most closely related 93.21
cd03814 364 GT1_like_2 This family is most closely related to 92.69
cd03821 375 GT1_Bme6_like This family is most closely related 92.27
cd04962 371 GT1_like_5 This family is most closely related to 91.84
cd03795 357 GT1_like_4 This family is most closely related to 91.77
cd03809 365 GT1_mtfB_like This family is most closely related 91.74
cd03820 348 GT1_amsD_like This family is most closely related 91.7
cd03796 398 GT1_PIG-A_like This family is most closely related 91.68
cd03823 359 GT1_ExpE7_like This family is most closely related 91.55
cd03825 365 GT1_wcfI_like This family is most closely related 90.9
PF13439177 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 90.81
cd04955 363 GT1_like_6 This family is most closely related to 90.57
cd03807 365 GT1_WbnK_like This family is most closely related 89.93
cd03784 401 GT1_Gtf_like This family includes the Gtfs, a grou 88.92
TIGR02149 388 glgA_Coryne glycogen synthase, Corynebacterium fam 88.9
TIGR03449 405 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino 88.84
cd03811 353 GT1_WabH_like This family is most closely related 88.55
cd04951 360 GT1_WbdM_like This family is most closely related 87.46
cd01635 229 Glycosyltransferase_GTB_type Glycosyltransferases 87.25
PF03033139 Glyco_transf_28: Glycosyltransferase family 28 N-t 87.22
cd03808 359 GT1_cap1E_like This family is most closely related 86.66
cd03822 366 GT1_ecORF704_like This family is most closely rela 86.37
cd03800 398 GT1_Sucrose_synthase This family is most closely r 86.18
TIGR01133 348 murG undecaprenyldiphospho-muramoylpentapeptide be 82.9
PRK09922 359 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D 82.85
cd03812 358 GT1_CapH_like This family is most closely related 81.13
TIGR02472 439 sucr_P_syn_N sucrose-phosphate synthase, putative, 80.93
>PRK14099 glycogen synthase; Provisional Back     alignment and domain information 
Probab=99.97  E-value=3.1e-30  Score=263.92  Aligned_cols=118  Identities=27%  Similarity=0.300  Sum_probs=97.4

Q ss_pred             CCCceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCC-CCeEEEEEe-CCcceEEEEEEEEE
Q 015971          275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQD-TGIRKRYRV-DRQDIEVAYFQAYI  352 (397)
Q Consensus       275 ~n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~~~~d-~~~~~~i~~-~G~~~~v~V~~~~~  352 (397)
                      |++|||||||+||+||+||||||||+++||+||+++||+|+||||+|+++..... ......+.+ .+  ..++++++..
T Consensus         1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   78 (485)
T PRK14099          1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFG--GPARLLAARA   78 (485)
T ss_pred             CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCC--ceEEEEEEEe
Confidence            3569999999999999999999999999999999999999999999999853321 111112221 12  2578899888


Q ss_pred             CCceEEEeeCcccccCCCccccC----CCCCCccchHHHHHhhhhccc
Q 015971          353 DGVDFVFLDSPLFRHLGNNIYGG----GREVRNSFIDSPLFCLVEHIS  396 (397)
Q Consensus       353 ~GV~vYFIDnp~fF~R~g~IYgg----~y~D~~NaeRFAfFSkAALE~  396 (397)
                      +||++||||+|.||+|++++|++    +|.|  |++||+|||+||||+
T Consensus        79 ~~v~~~~~~~~~~f~r~~~~y~~~~~~~~~d--~~~rf~~f~~a~~~~  124 (485)
T PRK14099         79 GGLDLFVLDAPHLYDRPGNPYVGPDGKDWPD--NAQRFAALARAAAAI  124 (485)
T ss_pred             CCceEEEEeChHhhCCCCCCCCCccCCCCCc--HHHHHHHHHHHHHHH
Confidence            99999999999999987668963    5778  999999999999984

>PRK14098 glycogen synthase; Provisional Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2 Back     alignment and domain information
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information
>PRK00654 glgA glycogen synthase; Provisional Back     alignment and domain information
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02094 more_P_ylases alpha-glucan phosphorylases Back     alignment and domain information
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences Back     alignment and domain information
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase Back     alignment and domain information
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK10307 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02846 digalactosyldiacylglycerol synthase Back     alignment and domain information
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A Back     alignment and domain information
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A Back     alignment and domain information
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family Back     alignment and domain information
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase Back     alignment and domain information
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli Back     alignment and domain information
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional Back     alignment and domain information
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
3vue_A 536 Crystal Structure Of Rice Granule Bound Starch Synt 1e-14
1rzu_A 485 Crystal Structure Of The Glycogen Synthase From A. 1e-04
1rzv_A 485 Crystal Structure Of The Glycogen Synthase From Agr 8e-04
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain Length = 536 Back     alignment and structure 
Iteration: 1

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
           MNV+ V AE  PWSKTGGLGDV G LP A+A  GHRVMV++P Y  Y +  DT +    +
Sbjct: 10  MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRH-----LGNNIYG--GGREVRNSFIDSPLFC 390
           V  +   V +F  Y  GVD VF+D P F        G  IYG   G + +++ +   L C
Sbjct: 70  VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLC 129
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp Length = 485 Back     alignment and structure
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) Length = 485 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
1rzu_A 485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 5e-35
2qzs_A 485 Glycogen synthase; glycosyl-transferase, GT-B fold 1e-33
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 6e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Length = 485 Back     alignment and structure
 Score =  133 bits (338), Expect = 5e-35
 Identities = 30/98 (30%), Positives = 43/98 (43%)

Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
           MNV+ V++E  P  KTGGL DV GALP AL   G R   + P Y          ++    
Sbjct: 1   MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEF 60

Query: 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGG 375
            D    +    +   + +D + LD+P +       Y G
Sbjct: 61  TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLG 98
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Length = 485 Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A* 3l01_A* Length = 439 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query397
3vue_A 536 GBSS-I, granule-bound starch synthase 1, chloropla 99.95
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 99.03
1rzu_A 485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 98.77
2qzs_A 485 Glycogen synthase; glycosyl-transferase, GT-B fold 98.7
3c48_A 438 Predicted glycosyltransferases; retaining glycosyl 97.55
2iuy_A 342 Avigt4, glycosyltransferase; antibiotics, family G 96.74
2r60_A 499 Glycosyl transferase, group 1; rossmann-fold; 1.80 96.52
2iw1_A 374 Lipopolysaccharide core biosynthesis protein RFAG; 96.26
2gek_A 406 Phosphatidylinositol mannosyltransferase (PIMA); G 95.6
2x0d_A 413 WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge 95.24
3okp_A 394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 94.81
4amg_A 400 Snogd; transferase, polyketide biosynthesis, GT1 f 94.75
2x6q_A 416 Trehalose-synthase TRET; biosynthetic protein; 2.2 94.67
3rsc_A 415 CALG2; TDP, enediyne, structural genomics, PSI-2, 92.41
1f0k_A 364 MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe 92.29
3oti_A 398 CALG3; calicheamicin, TDP, structural genomics, PS 91.6
3oy2_A 413 Glycosyltransferase B736L; rossmann fold, GDP-mann 91.19
3ia7_A 402 CALG4; glycosysltransferase, calicheamicin, enediy 91.13
3otg_A 412 CALG1; calicheamicin, TDP, structural genomics, PS 90.63
4fzr_A 398 SSFS6; structural genomics, PSI-biology, protein s 90.12
3h4t_A 404 Glycosyltransferase GTFA, glycosyltransferase; van 89.72
3tsa_A 391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 89.08
2p6p_A 384 Glycosyl transferase; X-RAY-diffraction,urdamycina 88.47
2yjn_A 441 ERYCIII, glycosyltransferase; transferase, cytochr 88.2
2iya_A 424 OLEI, oleandomycin glycosyltransferase; carbohydra 87.89
1rrv_A 416 Glycosyltransferase GTFD; GT-B, glycosyltransferas 86.04
1iir_A 415 Glycosyltransferase GTFB; rossmann fold; 1.80A {Am 85.71
2iyf_A 430 OLED, oleandomycin glycosyltransferase; antibiotic 84.89
2hy7_A 406 Glucuronosyltransferase GUMK; glycosyltransferases 81.92
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* Back     alignment and structure
Probab=99.95  E-value=4.1e-28  Score=247.89  Aligned_cols=120  Identities=42%  Similarity=0.721  Sum_probs=97.8

Q ss_pred             CCCceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCCeEEEEEeCCcceEEEEEEEEECC
Q 015971          275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDG  354 (397)
Q Consensus       275 ~n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~~~~d~~~~~~i~~~G~~~~v~V~~~~~~G  354 (397)
                      +..|||||||+||+||+||||||||+++||+||+++||+|+||||.|+++.+..+......+.+.++...+++++...+|
T Consensus         7 ~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   86 (536)
T 3vue_A            7 HHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYERVRFFHCYKRG   86 (536)
T ss_dssp             -CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEEEEEEEECEETT
T ss_pred             CCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceEEEEEEEEEECC
Confidence            35699999999999999999999999999999999999999999999988755443344456677777888999988999


Q ss_pred             ceEEEeeCcccccCC-----CccccC----CCCCCccchHHHHHhhhhccc
Q 015971          355 VDFVFLDSPLFRHLG-----NNIYGG----GREVRNSFIDSPLFCLVEHIS  396 (397)
Q Consensus       355 V~vYFIDnp~fF~R~-----g~IYgg----~y~D~~NaeRFAfFSkAALE~  396 (397)
                      |++||||+|.||+|.     +.+|++    +|.|  |++||++||+|++++
T Consensus        87 v~~y~id~~~~~~r~~~~~~~~~Y~~~~~~~~~d--~~~rf~~f~~a~l~~  135 (536)
T 3vue_A           87 VDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKD--NQMRFSLLCQAALEA  135 (536)
T ss_dssp             EEEEEEECTTTTCC------------------CH--HHHHHHHHHHHHHHH
T ss_pred             ceEEEecChhhhccccccCCCcccCCCccCccch--HHHHHHHHHHHHHHH
Confidence            999999999999863     357874    3678  999999999999874
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Back     alignment and structure
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Back     alignment and structure
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Back     alignment and structure
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 397
d1rzua_ 477 c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacte 5e-35
d2bisa1 437 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyro 2e-20
d2iw1a1 370 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynt 0.004
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Length = 477 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  132 bits (332), Expect = 5e-35
 Identities = 30/100 (30%), Positives = 43/100 (43%)

Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
           MNV+ V++E  P  KTGGL DV GALP AL   G R   + P Y          ++    
Sbjct: 1   MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEF 60

Query: 338 VDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGR 377
            D    +    +   + +D + LD+P +       Y G  
Sbjct: 61  TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGPYLGQT 100
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 437 Back     information, alignment and structure
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Length = 370 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query397
d1rzua_ 477 Glycogen synthase 1, GlgA {Agrobacterium tumefacie 99.83
d2bisa1 437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 99.4
d2iw1a1 370 Lipopolysaccharide core biosynthesis protein RfaG 96.04
d1rrva_ 401 TDP-vancosaminyltransferase GftD {Amycolatopsis or 93.46
d1iira_ 401 UDP-glucosyltransferase GtfB {Amycolatopsis orient 90.82
d1pn3a_ 391 TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi 88.67
d1jaya_ 212 Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae 87.18
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.83  E-value=2.4e-21  Score=187.45  Aligned_cols=115  Identities=27%  Similarity=0.402  Sum_probs=94.0

Q ss_pred             ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCCeEEEEEe-CCcceEEEEEEEEECCce
Q 015971          278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRV-DRQDIEVAYFQAYIDGVD  356 (397)
Q Consensus       278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~~~~d~~~~~~i~~-~G~~~~v~V~~~~~~GV~  356 (397)
                      |||||||+|++||+|+|||||||++|+++|+++||+|+||+|.|+++.......++ .+.+ ......+.++.....|++
T Consensus         1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~P~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~   79 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVK-CFEFTDLLGEKADLLEVQHERLD   79 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHHCCSCEE-EEEESCSSSCCEEEEEEEETTEE
T ss_pred             CEEEEEEEeeecccccCcHHHHHHHHHHHHHHcCCeEEEEecCCcchhhhcccceE-EEEEeccCCceEEEEEEEECCee
Confidence            99999999999999999999999999999999999999999999987543332222 2222 222345788888889999


Q ss_pred             EEEeeCcccccCCCccccC----CCCCCccchHHHHHhhhhcc
Q 015971          357 FVFLDSPLFRHLGNNIYGG----GREVRNSFIDSPLFCLVEHI  395 (397)
Q Consensus       357 vYFIDnp~fF~R~g~IYgg----~y~D~~NaeRFAfFSkAALE  395 (397)
                      +|||++|.||.|.+.+|..    .|.|  +..+|..|++|+++
T Consensus        80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  120 (477)
T d1rzua_          80 LLILDAPAYYERSGGPYLGQTGKDYPD--NWKRFAALSLAAAR  120 (477)
T ss_dssp             EEEEECHHHHCSSSCSSBCTTSSBCTT--HHHHHHHHHHHHHH
T ss_pred             EEEecChhhcccCCCcccCcccccccc--cHHHHHHHHHHHHh
Confidence            9999999999887777753    3667  89999999998754
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure