Citrus Sinensis ID: 015972

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
MQGSMFPFGSTLPSEAFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKGNVCLGILNGAEVGLQDLNVIGGIGDFV
ccccccccccccccccEEcccccccccccccccccccHHHHHcccccccccccEEEEEEcccccccEEEEEEEEcccccEEEEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEEEccccccccccEEEEEEEEcccccccccccEEEEccccccHHHHHccccccccccEEEEcccccccEEEEcccccccccEEEEEccccccccccEEEEEEEEccEEEccccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEccccEEEEEccccEEEEEEEcccccccccEEEEEccccc
cccEEEEcccccccccEEEEcccccccccccccccHcHHHHHcccccccccccccccccccccccEEEEEEEEEccccccEEEEEEcccccEEEEccccccHccccccccccccccccccccHHHHHHccccccccccccccEEEEEEEccccccEEEEEEEEEEEcccccEccccEEEEEEccccccccccccccEEccccccccHHHHHHHccccccEEEEEEccccccEEEEccccccccccEEEEcccccccEEEEcccEEEEccEEEcccccEEEEEccccEEEccHHHHHHHHHHHHcccccccccccccccccccHccccccEEEEcccccccccEEEEEccccEEEEEEEcccHEEEEEcccEEEEEEccccccccccEEEEEcccccc
mqgsmfpfgstlpseafvrlpdrsfhfqpvpgrlswsrnYAAKGIKFICACSSLLFqvhgnvyptgyynvtmyigqparpyfldldtgsdltwlqcdapcvrcveaphplyrpsndlvpcedpicaslhapghhncedpaqcdyeleyadggsslgVLVKDAfafnytngqrlnprlalgcgynqvpgasyhpldgilglgkgkssIVSQLHSQKLIRNVVGhclsgggggflffgddlydssrVVWTSmssdytkyyspgvaelffggettglknlpvvfdsgssytylNRVTYQTLTSIMKKELSAkslkeapedetlplcwkgrrpfknvhDVKKCFRTLALsftdgktrtlfeltpEAYLIISNKGNVCLGIlngaevglqdlnviggigdfv
mqgsmfpfgstLPSEAFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIMKKELsakslkeapedetlplcwkgrrpfknvhdVKKCFRTlalsftdgktrTLFELTPEAYLIISNKGNVCLGILNGaevglqdlnviggigdfv
MQGSMFPFGSTLPSEAFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHClsgggggflffgddlydssRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKGNVCLGILNGAEVGLQDLNVIGGIGDFV
***************AFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHC********LFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIMK***************TLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKGNVCLGILNGAEVGLQDLNVIGGIG***
*************************************************************VYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEA************PCEDPICA*************AQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIMKKELSA******PEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKGNVCLGILNGAEVGLQDLNVIGGIGDFV
MQGSMFPFGSTLPSEAFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKGNVCLGILNGAEVGLQDLNVIGGIGDFV
*QGSMFPFGSTLPSEAFVRLPDRSF***************************SLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKGNVCLGILNGAEVGLQDLNVIGGIGDFV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQGSMFPFGSTLPSEAFVRLPDRSFHFQPVPGRLSWSRNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKGNVCLGILNGAEVGLQDLNVIGGIGDFV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query397 2.2.26 [Sep-21-2011]
Q0IU52410 Aspartic proteinase Asp1 no no 0.841 0.814 0.469 1e-82
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.846 0.819 0.466 3e-80
Q9S9K4475 Aspartic proteinase-like no no 0.788 0.658 0.25 1e-19
Q766C3437 Aspartic proteinase nepen N/A no 0.745 0.677 0.247 3e-16
Q9LX20528 Aspartic proteinase-like no no 0.581 0.437 0.286 3e-16
Q766C2438 Aspartic proteinase nepen N/A no 0.725 0.657 0.241 4e-16
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.773 0.614 0.259 5e-13
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.282 0.238 0.296 6e-10
Q3EBM5447 Probable aspartic proteas no no 0.299 0.266 0.296 7e-09
Q6XBF8437 Aspartic proteinase CDR1 no no 0.654 0.594 0.268 7e-09
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function desciption
 Score =  306 bits (785), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 169/360 (46%), Positives = 229/360 (63%), Gaps = 26/360 (7%)

Query: 52  SSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLY 111
           S+++ ++HGNVYP G++ +TM IG PA+ YFLD+DTGS LTWLQCDAPC  C   PH LY
Sbjct: 22  SAVVLELHGNVYPIGHFFITMNIGDPAKSYFLDIDTGSTLTWLQCDAPCTNCNIVPHVLY 81

Query: 112 RPS-NDLVPCEDPICASLHAP--GHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYT 168
           +P+   LV C D +C  L+        C    QCDY ++Y D  SS+GVLV D F+ + +
Sbjct: 82  KPTPKKLVTCADSLCTDLYTDLGKPKRCGSQKQCDYVIQYVD-SSSMGVLVIDRFSLSAS 140

Query: 169 NGQRLNP-RLALGCGYNQ------VPGASYHPLDGILGLGKGKSSIVSQLHSQKLI-RNV 220
           NG   NP  +A GCGY+Q      VP     P+D ILGL +GK +++SQL SQ +I ++V
Sbjct: 141 NGT--NPTTIAFGCGYDQGKKNRNVP----IPVDSILGLSRGKVTLLSQLKSQGVITKHV 194

Query: 221 VGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLP-- 278
           +GHC+S  GGGFLFFGD    +S V WT M+ ++ KYYSPG   L F   +  +   P  
Sbjct: 195 LGHCISSKGGGFLFFGDAQVPTSGVTWTPMNREH-KYYSPGHGTLHFDSNSKAISAAPMA 253

Query: 279 VVFDSGSSYTYLNRVTYQTLTSIMKKELSA--KSLKEAPE-DETLPLCWKGRRPFKNVHD 335
           V+FDSG++YTY     YQ   S++K  L++  K L E  E D  L +CWKG+     + +
Sbjct: 254 VIFDSGATYTYFAAQPYQATLSVVKSTLNSECKFLTEVTEKDRALTVCWKGKDKIVTIDE 313

Query: 336 VKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKGNVCLGILNGAE--VGLQDLNVIGGI 393
           VKKCFR+L+L F DG  +   E+ PE YLIIS +G+VCLGIL+G++  + L   N+IGGI
Sbjct: 314 VKKCFRSLSLEFADGDKKATLEIPPEHYLIISQEGHVCLGILDGSKEHLSLAGTNLIGGI 373

Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query397
334187133425 aspartyl protease family protein [Arabid 0.896 0.837 0.693 1e-146
297798582425 hypothetical protein ARALYDRAFT_328390 [ 0.896 0.837 0.693 1e-146
79495937401 aspartyl protease family protein [Arabid 0.894 0.885 0.695 1e-145
26452545413 putative nucellin [Arabidopsis thaliana] 0.896 0.861 0.693 1e-145
312282457424 unnamed protein product [Thellungiella h 0.876 0.820 0.703 1e-145
4490316420 nucellin-like protein [Arabidopsis thali 0.879 0.830 0.666 1e-142
225438361426 PREDICTED: aspartic proteinase Asp1 [Vit 0.858 0.800 0.708 1e-140
255563835433 nucellin, putative [Ricinus communis] gi 0.866 0.794 0.714 1e-138
56692305426 nucellin-like protein [Daucus carota] 0.843 0.786 0.676 1e-135
147802609424 hypothetical protein VITISV_037997 [Viti 0.853 0.799 0.690 1e-135
>gi|334187133|ref|NP_001190905.1| aspartyl protease family protein [Arabidopsis thaliana] gi|21592493|gb|AAM64443.1| nucellin-like protein [Arabidopsis thaliana] gi|332660834|gb|AEE86234.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/359 (69%), Positives = 294/359 (81%), Gaps = 3/359 (0%)

Query: 38  RNYAAKGIKFICACSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCD 97
           R  A    +F  A SS++F VHGNVYP GYYNVT+ IGQP RPY+LDLDTGSDLTWLQCD
Sbjct: 30  RKTAGFSDRFTRAVSSVVFPVHGNVYPLGYYNVTINIGQPPRPYYLDLDTGSDLTWLQCD 89

Query: 98  APCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGV 157
           APCVRC+EAPHPLY+PS+DL+PC DP+C +LH   +  CE P QCDYE+EYADGGSSLGV
Sbjct: 90  APCVRCLEAPHPLYQPSSDLIPCNDPLCKALHLNSNQRCETPEQCDYEVEYADGGSSLGV 149

Query: 158 LVKDAFAFNYTNGQRLNPRLALGCGYNQVPGA-SYHPLDGILGLGKGKSSIVSQLHSQKL 216
           LV+D F+ NYT G RL PRLALGCGY+Q+PGA S+HPLDG+LGLG+GK SI+SQLHSQ  
Sbjct: 150 LVRDVFSMNYTQGLRLTPRLALGCGYDQIPGASSHHPLDGVLGLGRGKVSILSQLHSQGY 209

Query: 217 IRNVVGHCLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYTKYYSPGV-AELFFGGETTGLK 275
           ++NV+GHCLS  GGG LFFGDDLYDSSRV WT MS +Y+K+YSP +  EL FGG TTGLK
Sbjct: 210 VKNVIGHCLSSLGGGILFFGDDLYDSSRVSWTPMSREYSKHYSPAMGGELLFGGRTTGLK 269

Query: 276 NLPVVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHD 335
           NL  VFDSGSSYTY N   YQ +T ++K+ELS K LKEA +D TLPLCW+GRRPF ++ +
Sbjct: 270 NLLTVFDSGSSYTYFNSKAYQAVTYLLKRELSGKPLKEARDDHTLPLCWQGRRPFMSIEE 329

Query: 336 VKKCFRTLALSFTDG-KTRTLFELTPEAYLIISNKGNVCLGILNGAEVGLQDLNVIGGI 393
           VKK F+ LALSF  G +++TLFE+ PEAYLIIS KGNVCLGILNG E+GLQ+LN+IG I
Sbjct: 330 VKKYFKPLALSFKTGWRSKTLFEIPPEAYLIISMKGNVCLGILNGTEIGLQNLNLIGDI 388

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297798582|ref|XP_002867175.1| hypothetical protein ARALYDRAFT_328390 [Arabidopsis lyrata subsp. lyrata] gi|297313011|gb|EFH43434.1| hypothetical protein ARALYDRAFT_328390 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79495937|ref|NP_567922.2| aspartyl protease family protein [Arabidopsis thaliana] gi|332660833|gb|AEE86233.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|26452545|dbj|BAC43357.1| putative nucellin [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|312282457|dbj|BAJ34094.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|4490316|emb|CAB38807.1| nucellin-like protein [Arabidopsis thaliana] gi|7270297|emb|CAB80066.1| nucellin-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225438361|ref|XP_002273988.1| PREDICTED: aspartic proteinase Asp1 [Vitis vinifera] gi|296082608|emb|CBI21613.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255563835|ref|XP_002522918.1| nucellin, putative [Ricinus communis] gi|223537845|gb|EEF39461.1| nucellin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|56692305|dbj|BAD80835.1| nucellin-like protein [Daucus carota] Back     alignment and taxonomy information
>gi|147802609|emb|CAN73001.1| hypothetical protein VITISV_037997 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query397
TAIR|locus:2205861405 AT1G44130 [Arabidopsis thalian 0.858 0.841 0.486 4e-90
TAIR|locus:2204725466 AT1G77480 [Arabidopsis thalian 0.861 0.733 0.456 8.2e-83
TAIR|locus:2028466583 AT1G49050 [Arabidopsis thalian 0.851 0.579 0.396 6.6e-58
TAIR|locus:2083098 632 AT3G50050 [Arabidopsis thalian 0.808 0.507 0.264 3.8e-26
TAIR|locus:2167776 631 AT5G43100 [Arabidopsis thalian 0.788 0.496 0.271 4.6e-25
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.780 0.639 0.286 3e-21
TAIR|locus:2183730474 AT5G10770 "AT5G10770" [Arabido 0.763 0.639 0.279 2.5e-20
TAIR|locus:2075512488 AT3G02740 [Arabidopsis thalian 0.768 0.625 0.285 5.2e-20
TAIR|locus:2198753485 AT1G05840 [Arabidopsis thalian 0.397 0.325 0.331 1.1e-19
TAIR|locus:505006268458 AT2G23945 [Arabidopsis thalian 0.387 0.336 0.365 4.6e-19
TAIR|locus:2205861 AT1G44130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 168/345 (48%), Positives = 225/345 (65%)

Query:    52 SSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLY 111
             SS++F + GNV+P GYY+V M IG P + +  D+DTGSDLTW+QCDAPC  C   P+  Y
Sbjct:    33 SSVVFPLSGNVFPLGYYSVLMQIGSPPKAFQFDIDTGSDLTWVQCDAPCSGCTLPPNLQY 92

Query:   112 RPSNDLVPCEDPICASLHAPGHHNCEDPA-QCDYELEYADGGSSLGVLVKDAFAFNYTNG 170
             +P  +++PC +PIC +LH P   +C +P  QCDYE++YAD GSS+G LV D F     NG
Sbjct:    93 KPKGNIIPCSNPICTALHWPNKPHCPNPQEQCDYEVKYADQGSSMGALVTDQFPLKLVNG 152

Query:   171 QRLNPRLALGCGYNQ-VPGASYHPLD-GILGLGKGKSSIVSQLHSQKLIRNVVGHCXXXX 228
               + P +A GCGY+Q  P A   P   G+LGLG+GK  +++QL S  L RNVVGHC    
Sbjct:   153 SFMQPPVAFGCGYDQSYPSAHPPPATAGVLGLGRGKIGLLTQLVSAGLTRNVVGHCLSSK 212

Query:   229 XXXXXXXXXXXXXXXRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYT 288
                             V WT + S    +Y+ G A+L F G+ TGLK L ++FD+GSSYT
Sbjct:   213 GGGFLFFGDNLVPSIGVAWTPLLSQ-DNHYTTGPADLLFNGKPTGLKGLKLIFDTGSSYT 271

Query:   289 YLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFT 348
             Y N   YQT+ +++  +L    LK A ED+TLP+CWKG +PFK+V +VK  F+T+ ++FT
Sbjct:   272 YFNSKAYQTIINLIGNDLKVSPLKVAKEDKTLPICWKGAKPFKSVLEVKNFFKTITINFT 331

Query:   349 DGKTRTLFELTPEAYLIISNKGNVCLGILNGAEVGLQDLNVIGGI 393
             +G+  T   L PE YLI+S  GNVCLG+LNG+EVGLQ+ NVIG I
Sbjct:   332 NGRRNTQLYLAPELYLIVSKTGNVCLGLLNGSEVGLQNSNVIGDI 376
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2204725 AT1G77480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028466 AT1G49050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083098 AT3G50050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167776 AT5G43100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183730 AT5G10770 "AT5G10770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075512 AT3G02740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198753 AT1G05840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006268 AT2G23945 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 1e-124
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 1e-41
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 1e-35
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 1e-29
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 7e-22
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 7e-19
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 2e-09
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 3e-09
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 4e-07
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 0.001
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information 
 Score =  360 bits (926), Expect = e-124
 Identities = 159/331 (48%), Positives = 181/331 (54%), Gaps = 84/331 (25%)

Query: 66  GYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPIC 125
           GYY VT+ IG P +PYFLD+DTGSDLTWLQCDAPC  C                      
Sbjct: 1   GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC---------------------- 38

Query: 126 ASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQ 185
                          QCDYE+EYADGGSS+GVLV D F+   TNG R  PR+A GCGY+Q
Sbjct: 39  ---------------QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQ 83

Query: 186 VPGA--SYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLFFGDDLYDSS 243
                    P DGILGLG+GK S+ SQL SQ +I+NV+GHCLS  GGGFLFFGDDL  SS
Sbjct: 84  QGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGHCLSSNGGGFLFFGDDLVPSS 143

Query: 244 RVVWTSMSSD-YTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIM 302
            V WT M  +   K+YSPG A L F G+ TG K L VVFDSGSSYTY N   Y       
Sbjct: 144 GVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY------- 196

Query: 303 KKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEA 362
                                                F+ L L F  G    L E+ PE 
Sbjct: 197 -------------------------------------FKPLTLKFGKGWRTRLLEIPPEN 219

Query: 363 YLIISNKGNVCLGILNGAEVGLQDLNVIGGI 393
           YLIIS KGNVCLGILNG+E+GL + N+IG I
Sbjct: 220 YLIISEKGNVCLGILNGSEIGLGNTNIIGDI 250

Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more divergent, except for the conserved catalytic site motif. Length = 273
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 397
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.97
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.89
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.78
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 98.06
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 96.05
PF1365090 Asp_protease_2: Aspartyl protease 95.27
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 93.96
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 91.09
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 88.75
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 86.76
PF1365090 Asp_protease_2: Aspartyl protease 85.72
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 82.7
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 81.34
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.8e-55  Score=435.61  Aligned_cols=307  Identities=28%  Similarity=0.517  Sum_probs=251.4

Q ss_pred             CCeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCC----CCCCCCccccccCCCCCCCCCCC
Q 015972           64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSND----LVPCEDPICASLHAPGHHNCEDP  139 (397)
Q Consensus        64 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S----~~~C~s~~C~~~~~~~~~~c~~~  139 (397)
                      ++++|+++|.||||||++.|+|||||+++||+|. +|..|..+.++.|||++|    .++|+++.|..+..  ...|..+
T Consensus        81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~  157 (431)
T PLN03146         81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCK-PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDE  157 (431)
T ss_pred             CCccEEEEEEcCCCCceEEEEECCCCCcceEcCC-CCcccccCCCCcccCCCCCCCcccCCCCcccccCCC--CCCCCCC
Confidence            4679999999999999999999999999999999 999999888999999998    48999999987653  2347665


Q ss_pred             CCCcceeeeCCCCeEEEEEEEEEEEeeccCC-CcCCCceEEEeeEecCCCCCCCCccEEEecCCCCCChhhhhhcccccc
Q 015972          140 AQCDYELEYADGGSSLGVLVKDAFAFNYTNG-QRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIR  218 (397)
Q Consensus       140 ~~~~~~i~Yg~Gs~~~G~~~~D~v~~~~~~g-~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~  218 (397)
                      +.|.|.+.|++|+.+.|.+++|+|+|+...+ ...++++.|||++...+.+ ....+||||||++.+|+++||...  +.
T Consensus       158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f-~~~~~GilGLG~~~~Sl~sql~~~--~~  234 (431)
T PLN03146        158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTF-DEKGSGIVGLGGGPLSLISQLGSS--IG  234 (431)
T ss_pred             CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCc-cCCCceeEecCCCCccHHHHhhHh--hC
Confidence            6799999999998889999999999975322 1357899999999874433 235899999999999999999764  55


Q ss_pred             eeeEEeecC-----CCceeEEeCCCCCCC-CCcEEeecccCC-CCceeEEeeEEEECCeEeecCC--------CCEEEcC
Q 015972          219 NVVGHCLSG-----GGGGFLFFGDDLYDS-SRVVWTSMSSDY-TKYYSPGVAELFFGGETTGLKN--------LPVVFDS  283 (397)
Q Consensus       219 ~~Fs~~l~~-----~~~G~l~fG~~~~~~-g~~~~~pl~~~~-~~~y~v~l~~i~v~g~~~~~~~--------~~~iiDS  283 (397)
                      ++||+||.+     ...|+|+||+..+.. ..+.|+||+.+. ..+|.|.+++|+||++.+.+..        +.+||||
T Consensus       235 ~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDS  314 (431)
T PLN03146        235 GKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDS  314 (431)
T ss_pred             CcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeC
Confidence            699999963     247999999865543 458999998643 2799999999999999876532        4799999


Q ss_pred             CCcceecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEECCCee
Q 015972          284 GSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAY  363 (397)
Q Consensus       284 GTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~y  363 (397)
                      ||++++||+++|++|+++|.+++......  .....++.||+...      .  ..+|+|+|+|+|    ++++|+|++|
T Consensus       315 GTt~t~Lp~~~y~~l~~~~~~~~~~~~~~--~~~~~~~~C~~~~~------~--~~~P~i~~~F~G----a~~~l~~~~~  380 (431)
T PLN03146        315 GTTLTLLPSDFYSELESAVEEAIGGERVS--DPQGLLSLCYSSTS------D--IKLPIITAHFTG----ADVKLQPLNT  380 (431)
T ss_pred             CccceecCHHHHHHHHHHHHHHhccccCC--CCCCCCCccccCCC------C--CCCCeEEEEECC----CeeecCccee
Confidence            99999999999999999999888643211  12234578997431      1  248999999997    8999999999


Q ss_pred             EEEeCCCcEEEEEEeCCcCCCCCeeEEccccc
Q 015972          364 LIISNKGNVCLGILNGAEVGLQDLNVIGGIGD  395 (397)
Q Consensus       364 i~~~~~~~~C~~~~~~~~~~~~~~~IlGdv~~  395 (397)
                      ++...++..|+++....     +.+||||+++
T Consensus       381 ~~~~~~~~~Cl~~~~~~-----~~~IlG~~~q  407 (431)
T PLN03146        381 FVKVSEDLVCFAMIPTS-----SIAIFGNLAQ  407 (431)
T ss_pred             EEEcCCCcEEEEEecCC-----CceEECeeeE
Confidence            99877778999987643     2589999875

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 5e-62
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 2e-61
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 1e-57
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 4e-12
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 9e-12
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 1e-10
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 2e-09
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 1e-08
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 3e-08
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 3e-08
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 5e-08
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 2e-07
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 2e-07
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 2e-07
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 3e-07
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 5e-07
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 7e-07
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 7e-07
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 8e-07
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 2e-06
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 3e-06
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 4e-06
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 4e-06
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 5e-06
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 2e-05
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 5e-05
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 6e-05
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 6e-05
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 7e-05
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 2e-04
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 4e-04
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 5e-04
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  204 bits (519), Expect = 5e-62
 Identities = 58/376 (15%), Positives = 114/376 (30%), Gaps = 53/376 (14%)

Query: 52  SSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLY 111
           + ++  V  +   TG +   +    P     + +D   +  W+ C+           P  
Sbjct: 8   NLVVLPVQND-GSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCE-QQYSSKTYQAPFC 65

Query: 112 RPSN----DLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNY 167
             +     +   C     AS        C                + LG L +D  A + 
Sbjct: 66  HSTQCSRANTHQCLSCPAASR-----PGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHA 120

Query: 168 TNGQRLN-------PRLALGCGYNQVPGASYHP-LDGILGLGKGKSSIVSQLHSQKLIRN 219
           T G           P+    C  + +          G+ GLG    S+ +QL S   ++ 
Sbjct: 121 TQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQR 180

Query: 220 VVGHCLSG--GGGGFLFFGDDLYDSSR---------VVWTSMSSDYTKYYSPGVAELFFG 268
               CLS      G + FGD   +  +         + +T ++      Y+  V  +   
Sbjct: 181 QFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRIN 240

Query: 269 GETTGLKNLP-----------VVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPED 317
             +    N              +  + + +  L +  YQ  T +  ++L      +    
Sbjct: 241 QHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPK--QAQVKSV 298

Query: 318 ETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKGNVCLGIL 377
               LC+           V      L +   +G     + ++ E  ++ +  G  CLG++
Sbjct: 299 APFGLCFNS-NKINAYPSV-----DLVMDKPNGPV---WRISGEDLMVQAQPGVTCLGVM 349

Query: 378 NGAEVGLQDLNVIGGI 393
           NG     +    +G  
Sbjct: 350 NGGMQP-RAEITLGAR 364
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query397
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.96
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.85
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 98.13
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 84.36
2hs1_A99 HIV-1 protease; ultra-high resolution active site 84.12
3liy_A116 Protease; hydrolase, hydrolase-hydrolase inhibitor 83.69
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 80.71
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=2.1e-55  Score=437.49  Aligned_cols=328  Identities=22%  Similarity=0.364  Sum_probs=258.6

Q ss_pred             CCceeEeeeecccCCeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCC
Q 015972           51 CSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHA  130 (397)
Q Consensus        51 ~~~~~~pl~g~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~  130 (397)
                      ++++.+|++++. .+++|+++|+||||||++.|+|||||+++||+|. +|.     ....|.    .++|.++.|.....
T Consensus         6 ~~~~~~pv~~d~-~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~-~c~-----~Sst~~----~v~C~s~~C~~~~~   74 (413)
T 3vla_A            6 PSALVVPVKKDA-STLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD-QNY-----VSSTYR----PVRCRTSQCSLSGS   74 (413)
T ss_dssp             CSEEEEEEEECT-TTCCEEEEEEETTTTEEEEEEEETTCSSEEEECS-SSC-----CCTTCE----ECBTTSHHHHHTTC
T ss_pred             CccEEEEeeecC-CCCeEEEEEEcCCCCcceEEEEeCCChhhhcccC-CCC-----CCCCcC----ccCCCccccccccc
Confidence            577889999875 6899999999999999999999999999999998 652     112232    38999999987654


Q ss_pred             CCCC--------CCCCCCCCcceeee-CCCCeEEEEEEEEEEEeeccCCC-----cCCCceEEEeeEecCCCCCCCCccE
Q 015972          131 PGHH--------NCEDPAQCDYELEY-ADGGSSLGVLVKDAFAFNYTNGQ-----RLNPRLALGCGYNQVPGASYHPLDG  196 (397)
Q Consensus       131 ~~~~--------~c~~~~~~~~~i~Y-g~Gs~~~G~~~~D~v~~~~~~g~-----~~~~~~~Fg~~~~~~~~~~~~~~~G  196 (397)
                      ..+.        .|. .+.|.|.+.| ++|+.+.|.+++|+|+|+..+|.     ..++++.|||++.+.........+|
T Consensus        75 ~~~~~c~s~~~~~c~-~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~~~dG  153 (413)
T 3vla_A           75 IACGDCFNGPRPGCN-NNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVG  153 (413)
T ss_dssp             CEEECCSSCCBTTBC-SSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCTTCCE
T ss_pred             CCCcccccCCCCCCC-CCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCccccccc
Confidence            3222        333 3579999999 58889999999999999865543     4678899999988521112456899


Q ss_pred             EEecCCCCCChhhhhhcccccceeeEEeecC--CCceeEEeCCCCC-------CCCC-cEEeecccCCC-----------
Q 015972          197 ILGLGKGKSSIVSQLHSQKLIRNVVGHCLSG--GGGGFLFFGDDLY-------DSSR-VVWTSMSSDYT-----------  255 (397)
Q Consensus       197 IlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~--~~~G~l~fG~~~~-------~~g~-~~~~pl~~~~~-----------  255 (397)
                      |||||++.+|++.||.++++++++||+||.+  +.+|.|+||+.+.       +.++ +.|+||..++.           
T Consensus       154 IlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~~~  233 (413)
T 3vla_A          154 MAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEP  233 (413)
T ss_dssp             EEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTTCC
T ss_pred             ccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCccccccccccCC
Confidence            9999999999999999998889999999986  4689999999863       3567 99999998731           


Q ss_pred             -CceeEEeeEEEECCeEeecC----------CCCEEEcCCCcceecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCccc
Q 015972          256 -KYYSPGVAELFFGGETTGLK----------NLPVVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCW  324 (397)
Q Consensus       256 -~~y~v~l~~i~v~g~~~~~~----------~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~  324 (397)
                       .||+|.+++|+|+++.+.+.          .+.+||||||++++||+++|++|+++|.+++...++++......++.|+
T Consensus       234 ~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~~C~  313 (413)
T 3vla_A          234 SVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACF  313 (413)
T ss_dssp             CCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTCSCEE
T ss_pred             CceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCCccee
Confidence             59999999999999998754          3689999999999999999999999999887532333332234567899


Q ss_pred             ccccCCcccccccccccEEEEEEecCCCCeEEEECCCeeEEEeCCCcEEEEEEeCCcCCCCCeeEEccccc
Q 015972          325 KGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKGNVCLGILNGAEVGLQDLNVIGGIGD  395 (397)
Q Consensus       325 ~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~yi~~~~~~~~C~~~~~~~~~~~~~~~IlGdv~~  395 (397)
                      +.+....  ..+...+|+|+|+|+|+  +++|+|++++|+++..++..|++++..... .+..|||||++.
T Consensus       314 ~~~~~~~--~~~~~~lP~i~f~f~g~--~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~-~~~~~IlGd~fl  379 (413)
T 3vla_A          314 STDNILS--TRLGPSVPSIDLVLQSE--SVVWTITGSNSMVYINDNVVCLGVVDGGSN-LRTSIVIGGHQL  379 (413)
T ss_dssp             ECTTCCE--ETTEECCCCEEEECSST--TCEEEECHHHHEEEEETTEEEECEEEEESS-CSSSEEECHHHH
T ss_pred             ccCCccc--cccccCCCcEEEEEcCC--cEEEEeCccceEEEeCCCcEEEEEEecCCC-cccceeEehhhh
Confidence            8653100  01123589999999962  389999999999987667899998876532 235899999875
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A* Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 397
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 3e-36
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 5e-20
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 7e-20
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 1e-19
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 4e-19
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 5e-19
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 1e-16
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 2e-16
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 3e-16
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 4e-16
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 4e-16
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 4e-16
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 6e-16
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 1e-15
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 2e-15
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 6e-15
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 9e-15
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 1e-14
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 1e-14
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 7e-12
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 3e-11
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 3e-10
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  134 bits (336), Expect = 3e-36
 Identities = 61/359 (16%), Positives = 107/359 (29%), Gaps = 46/359 (12%)

Query: 63  YPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSN----DLV 118
             T  Y +  + G       L LD    L W  CD       E P               
Sbjct: 11  PATSLYTIPFHDGAS-----LVLDVAGPLVWSTCD-GGQPPAEIPCSSPTCLLANAYPAP 64

Query: 119 PCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLA 178
            C  P C S       +  D     Y      G  + G L    F  N T+G +   ++ 
Sbjct: 65  GCPAPSCGS-------DKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVN 117

Query: 179 LGCGYNQVPGASYHPL----DGILGLGKGKSSIVSQLHSQKLIRNVVGHCLSGGGGGFLF 234
           +G      P      L     G+ GL     ++ +Q+ S + + N    CL  GG G   
Sbjct: 118 VGVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAI 177

Query: 235 FGDDLYDSSR----VVWTSMSS-DYTKYYSPGVAELFFGGETTGL-----KNLPVVFDSG 284
           FG       +    + +T + +   +  +      +  G     +         V+  + 
Sbjct: 178 FGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTR 237

Query: 285 SSYTYLNRVTYQTLTSIMKKELSAKSL------KEAPEDETLPLCWKGRRPFKNVHDVKK 338
             Y  L    Y+ L     K L+A+        +         +C+  +    N+     
Sbjct: 238 LPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYA- 296

Query: 339 CFRTLALSFTDGKTRTLFELTPEAYLIISNKGNVCLGILNGAEVGL----QDLNVIGGI 393
               + L    G     + +T +  ++   +G  C+  +    V          ++GG 
Sbjct: 297 -VPNVQLGLDGGSD---WTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGA 351
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query397
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d2nmza199 Human immunodeficiency virus type 1 protease {Huma 81.29
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=6e-46  Score=362.74  Aligned_cols=290  Identities=20%  Similarity=0.337  Sum_probs=231.0

Q ss_pred             eeEeeeecccCCeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCC
Q 015972           54 LLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGH  133 (397)
Q Consensus        54 ~~~pl~g~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~  133 (397)
                      ...||.+  +.+.+|+++|.||||||++.|+|||||+++||+|. .|..|..+.++.|||++|+      +|+       
T Consensus        46 ~~~~l~n--~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~-~C~~~~~~~~~~yd~~~Ss------t~~-------  109 (370)
T d3psga_          46 GDEPLEN--YLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSV-YCSSLACSDHNQFNPDDSS------TFE-------  109 (370)
T ss_dssp             CCCTTGG--GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBT-TCCSGGGTTSCCBCGGGCT------TCE-------
T ss_pred             ccccccc--ccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECc-cCCCcccccccccCCCccc------ccc-------
Confidence            3457763  34779999999999999999999999999999999 9999988889999999884      122       


Q ss_pred             CCCCCCCCCcceeeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCC-CCCCCccEEEecCCCC------CC
Q 015972          134 HNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGK------SS  206 (397)
Q Consensus       134 ~~c~~~~~~~~~i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~------~s  206 (397)
                           ...|.|++.|++| ++.|.++.|++.++    ...++++.|||+...... +.....+||+|||+..      ..
T Consensus       110 -----~~~~~~~~~Yg~G-s~~G~~~~d~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~  179 (370)
T d3psga_         110 -----ATSQELSITYGTG-SMTGILGYDTVQVG----GISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATP  179 (370)
T ss_dssp             -----EEEEEEEEESSSC-EEEEEEEEEEEEET----TEEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCC
T ss_pred             -----cCCCcEEEEeCCc-eEEEEEEEEEEeee----ceeeeeeEEEEEeeccCceecccccccccccccCcccccCCCc
Confidence                 1367899999999 79999999999995    567889999999876443 3345689999999864      34


Q ss_pred             hhhhhhccccc-ceeeEEeecC--CCceeEEeCCCCC--CCCCcEEeecccCCCCceeEEeeEEEECCeEeecC-CCCEE
Q 015972          207 IVSQLHSQKLI-RNVVGHCLSG--GGGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLK-NLPVV  280 (397)
Q Consensus       207 ~~~ql~~~~~i-~~~Fs~~l~~--~~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~g~~~~~~-~~~~i  280 (397)
                      ++.++..+++| +++|++|+..  ..+|.|+||+++.  ..+++.|+|+...  .+|.|.++++.++|+.+... ...+|
T Consensus       180 ~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~~--~~w~v~~~~i~v~g~~~~~~~~~~ai  257 (370)
T d3psga_         180 VFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVE--GYWQITLDSITMDGETIACSGGCQAI  257 (370)
T ss_dssp             HHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEE--TTEEEEECEEESSSSEEECTTCEEEE
T ss_pred             hhhhhhhhcccccceeEEEeecCCCCCceEecCCcCchhcccceeEEeeccc--ceEEEEEeeEEeCCeEEecCCCccEE
Confidence            78899999999 8999999984  4579999999864  5789999999877  59999999999999887653 46899


Q ss_pred             EcCCCcceecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEECC
Q 015972          281 FDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTP  360 (397)
Q Consensus       281 iDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p  360 (397)
                      |||||++++||++++++|++++.+....       .......|+..+           .+|+|+|+|+|    ++|.|+|
T Consensus       258 iDSGTs~~~lp~~~~~~i~~~l~~~~~~-------~~~~~~~C~~~~-----------~~P~l~f~f~g----~~~~l~~  315 (370)
T d3psga_         258 VDTGTSLLTGPTSAIANIQSDIGASENS-------DGEMVISCSSID-----------SLPDIVFTIDG----VQYPLSP  315 (370)
T ss_dssp             ECTTCCSEEEEHHHHHHHHHHTTCEECT-------TCCEECCGGGGG-----------GCCCEEEEETT----EEEEECH
T ss_pred             EecCCceEeCCHHHHHHHHHHhCCeeec-------CCcEEEeccccC-----------CCceEEEEECC----EEEEECh
Confidence            9999999999999999999888643321       122334687643           48999999976    9999999


Q ss_pred             CeeEEEeCCCcEEE-EEEeCCc-CCCCCeeEEccccc
Q 015972          361 EAYLIISNKGNVCL-GILNGAE-VGLQDLNVIGGIGD  395 (397)
Q Consensus       361 ~~yi~~~~~~~~C~-~~~~~~~-~~~~~~~IlGdv~~  395 (397)
                      ++|+++.+  ..|+ ++..... ...++.||||+++.
T Consensus       316 ~~yi~~~~--~~c~~~~~~~~~~~~~~~~~ILG~~fl  350 (370)
T d3psga_         316 SAYILQDD--DSCTSGFEGMDVPTSSGELWILGDVFI  350 (370)
T ss_dssp             HHHEEECS--SCEEESEEEECCCTTSCCEEEECHHHH
T ss_pred             HHeEEEcC--CeEEEEEEEcccCCCCCCcEEECHHhh
Confidence            99998743  3354 4433221 12356899999763
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure