Citrus Sinensis ID: 015983

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
Protein Sequence
MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTADYLRDFSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKYSLPYYIRPLPYPVHGLSINRKPTTPALGGIYLRKQFGQAMSDHLFLYYQNREDISEVEFSSPSGSEVKRCGVHPIYVHQGDKFNQTTDPVWKLNEFGHDCAESTSFTRGRNDDLDRAEAGGSCCGDDAGSTTSSERRFLKRSLEEYVGAAEASGSGCCNDDEEPQPKRFRQLE
Secondary Structure (PSIPRED)
cccccEEcEEcccccccccccccccccccccccccHHHHHHccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccccccccccccccEEEEEcccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEEEEccccEEEEEEcccccEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccHHHHccHHHHHHHccccccccccHHHHHcccccHcccccccccHHcHEEEccccccHccccHHHHHHcccEEEccccccHcccccccHHHHHHHEEccccccHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccHHHcccccccccEEEEcccccccccccccEEEEEEEEccccccccccEEEEEEEEEEccccccccccccccccccccccccccEEEEEEcccccccEEEEEEEccccccEEEEEEcEEEEEEEccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccEcc
Coil and Loop (DISEMBL)
mkslktlvlsgclklkkfpdIVQVLWDGTDIRELSFAIELLFRLVQefpektsskDQLLEIHLegtairglPASIELLSGNVllnlkdrknlkslpstinGLRCLRMLHLsgcsklknapetlgkVESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTADYLRDfsivvpgseipewfeyqnnegssitistppktyknskllgYAMCCvfhvpkyslpyyirplpypvhglsinrkpttpalggiYLRKQFGQAMSDHLFLYYqnredisevefsspsgsevkrcgvhpiyvhqgdkfnqttdpvwklnefghdcaestsftrgrnddldraeaggsccgddagsttsSERRFLKRSLEEYVGAaeasgsgccnddeepqpkrfrqle
Flexible Loop (DISEMBL)
mkslktlvlsgclklkkfpDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLlnlkdrknlkslpstinGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAEliaqkdsdswkknvdkgiklsttadylrdfsiVVPGSEIPEWFEYQNnegssitistppKTYKNSKLLGYAMCCVFHVPKYSLPYYIRPLPYPVHGLSINRKPTTPALGGIYLRKQFGQAMSDHLFLYYQNREDISEVEFSSPSGSEVKRCGVHPIYVHQGDKFNQTTDPVWKLNEFghdcaestsftrgrnddlDRAEAGgsccgddagsttssERRFLKRSLEEYVGAaeasgsgccnddeepqpkrfrqle
Low Complexity Region (SEG)
MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTADYLRDFSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKYSLPYYIRPLPYPVHGLSINRKPTTPALGGIYLRKQFGQAMSDHLFLYYQNREDISEVEFSSPSGSEVKRCGVHPIYVHQGDKFNQTTDPVWKLNEFGHDCAESTSFTRGRNDDLDRAEAGGSCCGDDAGSTTSSERRFLKRSLEEYVGAAEASGSGCCNDDEEPQPKRFRQLE
Disordered region (IsUnstruct)
*****TLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEK***KDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNA**TLGKV**LESAVETVTKFAKAELIAQK**DSWKKNVDKGIKLSTTADYLRDFSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKYSLPYYIRPLPYPVHGLSINRKPTTPALGGIYLRKQFGQAMSDHLFLYYQNREDIS***********VKRCGVHPIYVHQGDKFNQTTDPVWKLNEFGHDCA************************************************************************
Disordered Region (DISOPRED)
MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTADYLRDFSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKYSLPYYIRPLPYPVHGLSINRKPTTPALGGIYLRKQFGQAMSDHLFLYYQNREDISEVEFSSPSGSEVKRCGVHPIYVHQ**********************************************************************************************
Disordered Region (DISEMBL)
MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTADYLRDFSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKYSLPYYIRPLPYPVHGLSINRKPTTPALGGIYLRKQFGQAMSDHLFLYYQNREDISE**********VKRCGVHPIYVHQGDKFNQTTDPVWKLNEFGHDCAESTSFTRGRNDDLDRAEAGGSCC***********RRFLKRSLEEYVGAAEASGSGCCNDDEEPQPKRFRQLE
Disordered Region (DISPRO)
*KSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTADYLRDFSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKYSLPYYIRPLPYPVHGLSINRKPTTPALGGIYLRKQFGQAMSDHLFLYYQNREDISEVEFSSPSGSEVKRCGVHPIYVHQGDKFN*************************************************************************C***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTADYLRDFSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKYSLPYYIRPLPYPVHGLSINRKPTTPALGGIYLRKQFGQAMSDHLFLYYQNREDISEVEFSSPSGSEVKRCGVHPIYVHQGDKFNQTTDPVWKLNEFGHDCAESTSFTRGRNDDLDRAEAGGSCCGDDAGSTTSSERRFLKRSLEEYVGAAEASGSGCCNDDEEPQPKRFRQLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	397	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.289	0.100	0.338	2e-08
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.297	0.062	0.320	7e-07
O82500	1095	Putative disease resistan	no	no	0.710	0.257	0.242	4e-05
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.269	0.082	0.294	0.0001

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 9/124 (7%)

Query: 7   LVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGT 66
           L L+ C  LK+FP +        ++  L +        +++ PE        ++IH++G+
Sbjct: 671 LYLNDCKSLKRFPCV--------NVESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQGS 722

Query: 67  AIRGLPASIELLSGNVL-LNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGK 125
            IR LP+SI     +V  L L + KNL +LPS+I  L+ L  L +SGCSKL++ PE +G 
Sbjct: 723 GIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGD 782

Query: 126 VESL 129
           +++L
Sbjct: 783 LDNL 786

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 74/128 (57%), Gaps = 10/128 (7%)

Query: 2    KSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEI 61
            K L  L L GC KL+  P +V +  +  ++  LS   +L       FPE + +   + E+
Sbjct: 1305 KKLVFLNLKGCSKLENIPSMVDL--ESLEVLNLSGCSKL-----GNFPEISPN---VKEL 1354

Query: 62   HLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPE 121
            ++ GT I+ +P+SI+ L     L+L++ ++LK+LP++I  L+ L  L+LSGC  L+  P+
Sbjct: 1355 YMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPD 1414

Query: 122  TLGKVESL 129
            +  +++ L
Sbjct: 1415 SSRRMKCL 1422

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 136/330 (41%), Gaps = 48/330 (14%)

Query: 1    MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLE 60
            + SL+ L    C +L+ FP+I       T+IR L+    L+   + E P       ++ E
Sbjct: 700  LPSLEVLHFRYCTRLQTFPEI------STNIRLLN----LIGTAITEVPPSVKYWSKIDE 749

Query: 61   IHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAP 120
            I +E   ++ L     +L     L L++ K L+++P  +  L  L+M+ +S C  + + P
Sbjct: 750  ICMERAKVKRLVHVPYVLEK---LCLRENKELETIPRYLKYLPRLQMIDISYCINIISLP 806

Query: 121  ETLGKVESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTAD-------YLRDF 173
            +  G V    SA+  V   +   L     + S   N    +KL   A        Y+   
Sbjct: 807  KLPGSV----SALTAVNCESLQILHGHFRNKSIHLNFINCLKLGQRAQEKIHRSVYIHQS 862

Query: 174  SI---VVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHV--------P 222
            S    V+PG  +P +F Y++  GSSI I +       SK   + +C V            
Sbjct: 863  SYIADVLPGEHVPAYFSYRST-GSSIMIHS--NKVDLSKFNRFKVCLVLGAGKRFEGCDI 919

Query: 223  KYSLPYYIRPLPYPVHGLSINRKPTTPALGGIYLRKQFGQAMSDHLFLYYQ--NREDISE 280
            K+   ++ +P  Y V      +   +P L   +L     + M  H    ++  +  +  E
Sbjct: 920  KFYKQFFCKPREYYV-----PKHLDSPLLKSDHLCMCEFELMPPHPPTEWELLHPNEFLE 974

Query: 281  VEFSSPSG---SEVKRCGVHPIYVHQGDKF 307
            V F S  G    EVK CG+  +  H+  +F
Sbjct: 975  VSFESRGGLYKCEVKECGLQFLEPHETSEF 1004

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 39/146 (26%)

Query: 1   MKSLKTLVLSGCLKLKKFPDI-VQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLL 59
           + SL+TL LSGC  L+ FP I   ++W                                 
Sbjct: 842 LSSLETLDLSGCSSLRSFPLISTNIVW--------------------------------- 868

Query: 60  EIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNA 119
            ++LE TAI  +P++I  L   V L +K    L+ LP+ +N L  L  L LSGCS L++ 
Sbjct: 869 -LYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDVN-LSSLETLDLSGCSSLRSF 926

Query: 120 P---ETLGKVESLESAVETVTKFAKA 142
           P   E++  +    +A+E +   +KA
Sbjct: 927 PLISESIKWLYLENTAIEEIPDLSKA 952

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
105922395	1282	TIR-NBS-LRR type disease resistance prot	0.549	0.170	0.3	5e-21
105922849	1228	TIR-NBS-LRR-TIR type disease resistance	0.546	0.176	0.316	6e-21
105922376	1152	TIR-NBS-LRR type disease resistance prot	0.544	0.187	0.290	2e-20
105922680	1282	TIR-NBS-LRR-TIR type disease resistance	0.546	0.169	0.3	6e-20
105922664	1107	TIR-NBS-TIR type disease resistance prot	0.546	0.196	0.3	7e-20
296089378	518	unnamed protein product [Vitis vinifera]	0.738	0.565	0.269	6e-19
359493343	1140	PREDICTED: TMV resistance protein N-like	0.738	0.257	0.269	1e-18
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.748	0.246	0.256	5e-18
296081002	599	unnamed protein product [Vitis vinifera]	0.534	0.353	0.3	7e-18
147851963	482	hypothetical protein VITISV_002336 [Viti	0.324	0.267	0.431	2e-17

>gi|105922395|gb|ABF81414.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 133/310 (42%), Gaps = 92/310 (29%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLE 60
           M+SLK  +L GC KL+KFPDIV                               + + L+ 
Sbjct: 768 MESLKVCILDGCSKLEKFPDIV------------------------------GNMNCLMV 797

Query: 61  IHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAP 120
           + L+GT I  L +SI  L G  +L++K  KNLKS+PS+I  L+ L+ L L GCS+ +N P
Sbjct: 798 LRLDGTGIEELSSSIHHLIGLEVLSMKTCKNLKSIPSSIGCLKSLKKLDLFGCSEFENIP 857

Query: 121 ETLGKVESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTADYLRDFSIVVPGS 180
           E LGKVESLE                               +    ++    F I +PG+
Sbjct: 858 ENLGKVESLE-------------------------------EFDGLSNPRPGFGIAIPGN 886

Query: 181 EIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKYSLPYYIRPLPYPVHGL 240
           EIP WF +Q+  GSSI++  P      S  +G+  C  F     S        P      
Sbjct: 887 EIPGWFNHQSM-GSSISVQVP------SWSMGFVACVAFSANGES--------PSLFCHF 931

Query: 241 SINRKPTTPALGGIYLRKQFGQAMSDHLFLYY-----------QNREDISEVEFSSPS-- 287
             N +   P+   + +   + Q +SDH++L+Y              E  S +E S  S  
Sbjct: 932 KANGRENYPS--PMCISCNYIQVLSDHIWLFYLSFDHLKELKEWKHESYSNIELSFHSFQ 989

Query: 288 -GSEVKRCGV 296
            G +VK CGV
Sbjct: 990 PGVKVKNCGV 999

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922849|gb|ABF81440.1| TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa]

 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 133/310 (42%), Gaps = 93/310 (30%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLE 60
           M+SLK   L GC KL+KFPDIV                               + ++L+ 
Sbjct: 731 MESLKICTLDGCSKLEKFPDIV------------------------------GNMNELMV 760

Query: 61  IHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAP 120
           + L+ T I  L +SI  L G  LL++   KNL+S+PS+I  L+ L+ L LSGCS+LK  P
Sbjct: 761 LRLDETGITELSSSIRHLIGLGLLSMNSCKNLESIPSSIGFLKSLKKLDLSGCSELKYIP 820

Query: 121 ETLGKVESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTADYLRDFSIVVPGS 180
           E LGKVESLE                             G+    T      F I VPG+
Sbjct: 821 ENLGKVESLEEF--------------------------DGLSNPRTG-----FGIAVPGN 849

Query: 181 EIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKYSLPYYIRPLPYPVHGL 240
           EIP WF +Q ++GSSI++  P  +      +G+  C  F        Y  RPL       
Sbjct: 850 EIPGWFNHQ-SKGSSISVQVPSWS------MGFVACVAFS------AYGERPLRCDFKA- 895

Query: 241 SINRKPTTPALGGIYLRKQFGQAMSDHLFLYY-----------QNREDISEVEFSSPSGS 289
             N +   P+L  I       Q +SDH++L+Y              E  S +E S  S  
Sbjct: 896 --NGRENYPSLMCISCNSI--QVLSDHIWLFYLSFDYLKELKEWQHESFSNIELSFHSYE 951

Query: 290 ---EVKRCGV 296
              +VK CGV
Sbjct: 952 RRVKVKNCGV 961

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922376|gb|ABF81413.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 133/310 (42%), Gaps = 94/310 (30%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLE 60
           M+SLK   L GC KL+KFPDIV                               + +QL  
Sbjct: 672 MESLKFFTLDGCSKLEKFPDIV------------------------------GNMNQLTV 701

Query: 61  IHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAP 120
           +HL+ T I  L +SI  L G  +L++ + +NL+S+PS+I  L+ L+ L LS CS+L+N P
Sbjct: 702 LHLDETGITKLSSSIHHLIGLEVLSMNNCRNLESIPSSIGCLKSLKKLDLSDCSELQNIP 761

Query: 121 ETLGKVESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTADYLRDFSIVVPGS 180
           + LGKVESLE                                    ++    F I +PG+
Sbjct: 762 QNLGKVESLE--------------------------------FDGLSNPRPGFGIAIPGN 789

Query: 181 EIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKYSLPYYIRPLPYPVHGL 240
           EIP WF +Q ++GSSI++  P      S  +G+  C  F     S        P      
Sbjct: 790 EIPGWFNHQ-SKGSSISVQVP------SWSMGFVACVAFSANDES--------PSLFCHF 834

Query: 241 SINRKPTTPALGGIYLRKQFGQAMSDHLFLYYQNREDISEVE--------------FSSP 286
             N +   P+   I  +   G   SDH++L+Y + + + E++               SS 
Sbjct: 835 KANERENYPSPMCISCK---GHLFSDHIWLFYLSFDYLKELQEWQHASFSNIELSFQSSE 891

Query: 287 SGSEVKRCGV 296
            G +VK CGV
Sbjct: 892 PGVKVKNCGV 901

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922680|gb|ABF81430.1| TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa]

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 131/310 (42%), Gaps = 93/310 (30%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLE 60
           M+SLK   L GC KL+KFPDI+                               + + L+ 
Sbjct: 733 MESLKVCTLDGCSKLEKFPDII------------------------------GNMNCLMV 762

Query: 61  IHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAP 120
           + L+ T+I  LP+SI  L G  LL++   KNL+S+PS+I  L+ L+ L LSGCS+LK  P
Sbjct: 763 LRLDETSITKLPSSIHHLIGLGLLSMNSCKNLESIPSSIGCLKSLKKLDLSGCSELKCIP 822

Query: 121 ETLGKVESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTADYLRDFSIVVPGS 180
           E LGKVESLE                               +    ++    F I VPG+
Sbjct: 823 ENLGKVESLE-------------------------------EFDGLSNPRPGFGIAVPGN 851

Query: 181 EIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKYSLPYYIRPLPYPVHGL 240
           EIP WF ++ ++GSSI++  P      S  +G+  C  F+    S        P      
Sbjct: 852 EIPGWFNHR-SKGSSISVQVP------SGRMGFFACVAFNANDES--------PSLFCHF 896

Query: 241 SINRKPTTPALGGIYLRKQFGQAMSDHLFLYY-----------QNREDISEVEFSSPS-- 287
             N +   P+   I      G   SDH++L+Y              E  S +E S  S  
Sbjct: 897 KANGRENYPSPMCINFE---GHLFSDHIWLFYLSFDYLKELQEWQHESFSNIELSFHSYE 953

Query: 288 -GSEVKRCGV 296
            G +V  CGV
Sbjct: 954 QGVKVNNCGV 963

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922664|gb|ABF81429.1| TIR-NBS-TIR type disease resistance protein [Populus trichocarpa]

 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 130/310 (41%), Gaps = 93/310 (30%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLE 60
           M+SLK   L GC KL++FPDIV                               + + L+ 
Sbjct: 711 MESLKVFTLDGCSKLERFPDIV------------------------------GNMNCLMV 740

Query: 61  IHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAP 120
           + L+GT I  L +SI  L G  LL++ + KNL+S+PS+I  L+ L+ L LS CS LKN P
Sbjct: 741 LRLDGTGIAELSSSIRHLIGLGLLSMTNCKNLESIPSSIGCLKSLKKLDLSCCSALKNIP 800

Query: 121 ETLGKVESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTADYLRDFSIVVPGS 180
           E LGKVESLE                               +    ++    F I VPG+
Sbjct: 801 ENLGKVESLE-------------------------------EFDGFSNPRPGFGIAVPGN 829

Query: 181 EIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKYSLPYYIRPLPYPVHGL 240
           EIP WF ++ ++GSSI++  P      S  +G+  C  F+    S        P      
Sbjct: 830 EIPGWFNHR-SKGSSISVQVP------SGRMGFFACVAFNANDES--------PSLFCHF 874

Query: 241 SINRKPTTPALGGIYLRKQFGQAMSDHLFLYY-----------QNREDISEVEFSSPS-- 287
             N +   P+   I      G   SDH++L+Y              E  S +E S  S  
Sbjct: 875 KANGRENYPSPMCINFE---GHLFSDHIWLFYLSFDYLKELQEWQHESFSNIELSFHSYE 931

Query: 288 -GSEVKRCGV 296
            G +V  CGV
Sbjct: 932 QGVKVNNCGV 941

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089378|emb|CBI39197.3| unnamed protein product [Vitis vinifera]

 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 152/364 (41%), Gaps = 71/364 (19%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVQ-------VLWDGTDIRELSFAIELLFRLVQEFPEKTS 53
           + SL+TL+LSGC KL+K P++ Q       +  DGT I + S   EL       F E + 
Sbjct: 131 LVSLETLILSGCSKLEKLPEVPQHMPYLSKLCLDGTAITDFSGWSEL-----GNFQENSG 185

Query: 54  SKDQLLEIHLEGTAIRGLPASIELLSGN-----------------------VLLNLKDRK 90
           + D L E++ + + IR LP+S  +L  +                         LNL    
Sbjct: 186 NLDCLNELNSDDSTIRQLPSSSVVLRNHNASPSSAPRRSHSIRPHCTLTSLTYLNLSGTS 245

Query: 91  NLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIAQK-- 148
            ++ LP  +  L  L+ L L+ C +L+  P     +E + ++  T  +    + + ++  
Sbjct: 246 IIR-LPWNLERLFMLQRLELTNCRRLQALPVLPSSIERMNASNCTSLELVSPQSVFKRFG 304

Query: 149 -------------------DSDSWKKNVDKGIKLSTTADYLRD----FSIVVPGSEIPEW 185
                              D  S   +V  G   ST A +  +    FS V PGSEIP+W
Sbjct: 305 GFLFGNCFKLRNCHSKMEHDVQSVASHVVPGAWRSTYASWHPNVGIPFSTVFPGSEIPDW 364

Query: 186 FEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKYSLPYYIRPLPYPVHGLSINRK 245
           F +  ++G  I I  PP  Y NS  LG+A+  V   P++    +        H L+ N  
Sbjct: 365 FRHH-SQGHEINIEVPPDWYINSNFLGFALSAVM-APQHDSRAWYMYCDLDTHDLNSNSH 422

Query: 246 PTTPALGGIYLRKQFGQAMSDHLFLYYQ------NREDISEVE--FSSPSGSEVKRCGVH 297
                 G    + Q     SDH++L Y       + E  S ++  FSS  G  VK CG  
Sbjct: 423 RICSFFGSWTYQLQHTPIESDHVWLAYVPSFLSFSCEKWSHIKFSFSSSGGCVVKSCGFC 482

Query: 298 PIYV 301
           P+Y+
Sbjct: 483 PVYI 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493343|ref|XP_002277693.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 153/364 (42%), Gaps = 71/364 (19%)

Query: 1    MKSLKTLVLSGCLKLKKFPDIVQ-------VLWDGTDIRELSFAIELLFRLVQEFPEKTS 53
            + SL+TL+LSGC KL+K P++ Q       +  DGT I + S   EL       F E + 
Sbjct: 754  LVSLETLILSGCSKLEKLPEVPQHMPYLSKLCLDGTAITDFSGWSEL-----GNFQENSG 808

Query: 54   SKDQLLEIHLEGTAIRGLPASIELLSGN-----------------------VLLNLKDRK 90
            + D L E++ + + IR LP+S  +L  +                         LNL    
Sbjct: 809  NLDCLNELNSDDSTIRQLPSSSVVLRNHNASPSSAPRRSHSIRPHCTLTSLTYLNLSGTS 868

Query: 91   NLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIAQK-- 148
             ++ LP  +  L  L+ L L+ C +L+  P     +E + ++  T  +    + + ++  
Sbjct: 869  IIR-LPWNLERLFMLQRLELTNCRRLQALPVLPSSIERMNASNCTSLELVSPQSVFKRFG 927

Query: 149  -------------------DSDSWKKNVDKGIKLSTTADYLRD----FSIVVPGSEIPEW 185
                               D  S   +V  G   ST A +  +    FS V PGSEIP+W
Sbjct: 928  GFLFGNCFKLRNCHSKMEHDVQSVASHVVPGAWRSTYASWHPNVGIPFSTVFPGSEIPDW 987

Query: 186  FEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKYSLPYYIRPLPYPVHGLSINRK 245
            F + +++G  I I  PP  Y NS  LG+A+  V   P++    +        H L+ N  
Sbjct: 988  FRH-HSQGHEINIEVPPDWYINSNFLGFALSAVM-APQHDSRAWYMYCDLDTHDLNSNSH 1045

Query: 246  PTTPALGGIYLRKQFGQAMSDHLFLYYQ------NREDISEVE--FSSPSGSEVKRCGVH 297
                  G    + Q     SDH++L Y       + E  S ++  FSS  G  VK CG  
Sbjct: 1046 RICSFFGSWTYQLQHTPIESDHVWLAYVPSFLSFSCEKWSHIKFSFSSSGGCVVKSCGFC 1105

Query: 298  PIYV 301
            P+Y+
Sbjct: 1106 PVYI 1109

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 157/358 (43%), Gaps = 61/358 (17%)

Query: 49   PEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRML 108
            P        L +++L       LP SI+ LSG   L ++D K L+SLP   + L   R+ 
Sbjct: 897  PNDIGYLSSLRQLNLSRNKFVSLPTSIDQLSGLQFLRMEDCKMLQSLPELPSNLEEFRV- 955

Query: 109  HLSGCSKLKNA--PETLGKVESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIK--LS 164
              +GC+ L+       L ++  L        + +        +SD W       ++    
Sbjct: 956  --NGCTSLEKMQFSRKLCQLNYLRYLFINCWRLS--------ESDCWNNMFPTLLRKCFQ 1005

Query: 165  TTADYLRDFSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKY 224
               + +  FS+++PGSEIP WF +Q+ EGSS+++ TPP +++N + LGYA+C     P +
Sbjct: 1006 GPPNLIESFSVIIPGSEIPTWFSHQS-EGSSVSVQTPPHSHENDEWLGYAVCASLGYPDF 1064

Query: 225  SLPYYIRPLPYPVHGLSINRKPTTPALGGIYLRKQFGQAMSDHL-FLYYQNR--EDISEV 281
                +  P+    +G     +        IY+R +  + +SDHL FLY+ +R       V
Sbjct: 1065 PPNVFRSPMQCFFNGDGNESE-------SIYVRLKPCEILSDHLWFLYFPSRFKRFDRHV 1117

Query: 282  EF---SSPSGSEVKRCGVHPIYVHQGDKFNQTTDPVWKLNEFGHDCAESTSFTRGRNDDL 338
             F    + S ++V +CGV  +Y    ++ N+ T           +  E+++F        
Sbjct: 1118 RFRFEDNCSQTKVIKCGVRLVYQQDVEELNRMT-----------NLYENSTF-------- 1158

Query: 339  DRAEAGGSCCGDDAGSTTSSERRFLKRSLEEYVGAAEASGSGCCNDDEEPQPKRFRQL 396
               E    C  +  G+        L + L       EASGS   + DE+P  K+ +Q+
Sbjct: 1159 ---EGVDECFQESGGA--------LVKRLGHTNDVGEASGS--VSSDEQPPTKKLKQI 1203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081002|emb|CBI18506.3| unnamed protein product [Vitis vinifera]

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 127/280 (45%), Gaps = 68/280 (24%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVQ-------VLWDGTDIRELSFAIELLFRLV-------- 45
           +KSL+TL+LS C KL+ FP+I++       +L DGT +++L  +IE L  LV        
Sbjct: 179 LKSLETLILSACSKLESFPEIMENMEHLKKLLLDGTALKQLHPSIEHLNGLVSLNLRDCK 238

Query: 46  --------------------------QEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLS 79
                                     Q+ PE   S   L+++  +GT +R  P+SI LL 
Sbjct: 239 NLATLPCSIGNLKSLETLIVSGCSKLQQLPENLGSLQCLVKLQADGTLVRQPPSSIVLLR 298

Query: 80  GNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLES-------A 132
                NL+   N  SLP+ I+ L  LR L L+ C  L   PE    +  + +        
Sbjct: 299 -----NLEILNNFFSLPAGISKLSKLRFLSLNHCKSLLQIPELPSSIIEVNAQYCSSLNT 353

Query: 133 VETVTKFAKAELIAQ-----------KDSDSWKKNVDKGIKLSTTADYLRDF--SIVVPG 179
           + T +     + + +            D+++   N    I      ++L DF  SI +PG
Sbjct: 354 ILTPSSVCNNQPVCRWLVFTLPNCFNLDAENPCSNDMAIISPRMQINFLPDFGFSIFLPG 413

Query: 180 SEIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVF 219
           SEIP+W   Q N GS +TI  PP  ++ S  LG+A+CCVF
Sbjct: 414 SEIPDWISNQ-NLGSEVTIELPPHWFE-SNFLGFAVCCVF 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147851963|emb|CAN81250.1| hypothetical protein VITISV_002336 [Vitis vinifera]

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 86/146 (58%), Gaps = 17/146 (11%)

Query: 1   MKSLKTLVLSGCLKLKKFPDI-------VQVLWDGTDIRELSFAIELLFRLV-------- 45
           M++L+ L LSGC +LKKFPDI       +++    T I EL  +IE L  LV        
Sbjct: 236 MEALEILNLSGCSELKKFPDIQGNMEHLLELYLASTAIEELPSSIEHLTGLVLLDLKSCS 295

Query: 46  --QEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLR 103
             + FPE     + L E+ L+GT+I GLP+SI+ L G VLLNL++ KNL SLP  +  L 
Sbjct: 296 KLENFPEMMKEMENLKELFLDGTSIEGLPSSIDRLKGLVLLNLRNCKNLVSLPKGMCTLT 355

Query: 104 CLRMLHLSGCSKLKNAPETLGKVESL 129
            L  L +SGCS+L N P+ LG ++ L
Sbjct: 356 SLETLIVSGCSQLNNFPKNLGSLQHL 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
TAIR|locus:2081810	1226	AT3G51570 [Arabidopsis thalian	0.299	0.097	0.330	1.8e-11
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.793	0.255	0.282	7.9e-11
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.395	0.131	0.346	1.3e-10
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.539	0.181	0.307	7.4e-10
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.327	0.103	0.375	1e-09
TAIR|locus:2827639	1195	AT2G17060 [Arabidopsis thalian	0.453	0.150	0.302	4.4e-09
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.314	0.102	0.379	5.9e-08
TAIR|locus:2153207	1165	AT5G45060 [Arabidopsis thalian	0.622	0.212	0.270	1.1e-07
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.304	0.093	0.328	1.7e-07
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.324	0.106	0.352	3e-07

TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 44/133 (33%), Positives = 68/133 (51%)

Query:     7 LVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELL-FRLVQEFPEKTSSKDQLLEIHLEG 65
             L L GC  LK  P+I  V     +I  LS    L  FR++ +          L  ++L+G
Sbjct:   682 LNLKGCTSLKSLPEINLV---SLEILILSNCSNLKEFRVISQ---------NLETLYLDG 729

Query:    66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGK 125
             T+I+ LP +  +L   V+LN+K    LK  P  ++ L+ L+ L LS C KL+N P    +
Sbjct:   730 TSIKELPLNFNILQRLVILNMKGCAKLKEFPDCLDDLKALKELILSDCWKLQNFPAICER 789

Query:   126 VESLESA-VETVT 137
             ++ LE   ++T T
Sbjct:   790 IKVLEILRLDTTT 802

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 7.9e-11, P = 7.9e-11
 Identities = 104/368 (28%), Positives = 157/368 (42%)

Query:     1 MKSLKTLVLSGCLKLKKFPDIVQ-------VLWDGTDIRELSFAIELLFRLVQEFPEKTS 53
             +KSL+ L LS C KLK FPD+         +L DGT I EL  +I   F L        S
Sbjct:   794 LKSLQELKLSRCSKLKIFPDVTAKMESLLVLLLDGTSIAELPCSI---FHL--------S 842

Query:    54 SKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGC 113
             S  +L     +   IR L   +  +     L LK  KNL SLP     L+CL   H  GC
Sbjct:   843 SLRRLCLSRNDN--IRTLRFDMGHMFHLKWLELKYCKNLTSLPILPPNLQCLNA-H--GC 897

Query:   114 SKLKN--APETLGK-VESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTADYL 170
             + L+   +P+TL    E + S     T   + E +++    S+   V K  KL +   Y 
Sbjct:   898 TSLRTVASPQTLPTPTEQIHSTF-IFTNCHELEQVSKNAIISY---VQKKSKLMSADRYS 953

Query:   171 RDF---SIV---VPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKY 224
              DF   S++    PG EIP WF +Q     S+ I   P+ + +S+++G A+C V    +Y
Sbjct:   954 PDFVYKSLIGTCFPGCEIPAWFNHQAL--GSVLILELPQAWNSSRIIGIALCVVVSFKEY 1011

Query:   225 SLPYYIRPLPYPVHGLSINRKPTTPALGGIYLRKQFGQAM-SDHLFLYY------QNRED 277
                     +       +++    +  +GG   +      + SDH+F+ Y      +NR+ 
Sbjct:  1012 RDQNSSLQVQCTCEFTNVSLSQESFMVGGWSEQGDETHTVESDHIFIGYTTLLNIKNRQQ 1071

Query:   278 I---SEVE--FSSPSG-SEVKRCGVHPIYVHQGDKFNQTTDPVWKLNEFGHDCAEST--S 329
                 +E+   F   +G SEV++C V         + N+     WK      D  +    S
Sbjct:  1072 FPLATEISLRFQVTNGTSEVEKCKVIKCGFSLVYEPNEADSTSWKETPRMEDNRQDRRIS 1131

Query:   330 FTRGRNDD 337
             F  G  DD
Sbjct:  1132 FKTGEGDD 1139

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 61/176 (34%), Positives = 89/176 (50%)

Query:     1 MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLE 60
             MK L  L L GC  LK  P+I Q++     ++ L  +    F+  Q         D+L  
Sbjct:   706 MKFLVFLNLRGCTSLKSLPEI-QLI----SLKTLILSGCSKFKTFQVI------SDKLEA 754

Query:    61 IHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAP 120
             ++L+GTAI+ LP  I  L   V+LN+K  K LK LP ++  L+ L  L LSGCSKL   P
Sbjct:   755 LYLDGTAIKELPCDIGRLQRLVMLNMKGCKKLKRLPDSLGQLKALEELILSGCSKLNEFP 814

Query:   121 ETLGKVESLESAV--ETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTADYLRDFS 174
             ET G +  LE  +  ET  K    ++++ +     +  ++K  K+S   D L  FS
Sbjct:   815 ETWGNMSRLEILLLDETAIK-DMPKILSVR-----RLCLNKNEKISRLPDLLNKFS 864

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 7.4e-10, P = 7.4e-10
 Identities = 74/241 (30%), Positives = 108/241 (44%)

Query:     1 MKSLKTLVLSGCLKLKKF--P----DIVQVLW-DGTDIRELSFAIELLFRLVQEFPEKTS 53
             +K+L+ LVLSGC KLK F  P      +Q+L  DGT ++E+   +      V++ PE   
Sbjct:   788 LKALQELVLSGCSKLKTFSVPIETMKCLQILLLDGTALKEMPKLLRFNSSRVEDLPELRR 847

Query:    54 SKDQLLEIHL----EGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLH 109
               + L  +          I  L   I  L     L+LK  KNL S+P     L    +L 
Sbjct:   848 GINGLSSLRRLCLSRNNMISNLQIDINQLYHLKWLDLKYCKNLTSIPLLPPNLE---ILD 904

Query:   110 LSGCSKLKN--APETLGKV-ESLESAVETVTKFAKAELIAQKDSDSW---KKNVD--KGI 161
               GC KLK   +P  L K+ E ++S     T     E +A+    S+   K  +D  +  
Sbjct:   905 AHGCEKLKTVASPMALLKLMEQVQSKF-IFTNCNNLEQVAKNSITSYAQRKSQLDARRCY 963

Query:   162 KLSTTADYLRDFSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHV 221
             K    ++ L  F    PGS++P WF YQ   GS++ +  PP    N +L   A+C V   
Sbjct:   964 KEGGVSEAL--FIACFPGSDVPSWFNYQTF-GSALRLKLPPHWCDN-RLSTIALCAVVTF 1019

Query:   222 P 222
             P
Sbjct:  1020 P 1020

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 53/141 (37%), Positives = 79/141 (56%)

Query:     1 MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLE 60
             M+SL  L L GC  L+  PDI  V      +R L  +    F+   EF  K  +K+ L E
Sbjct:   708 MESLMFLNLRGCTSLESLPDITLV-----GLRTLILSNCSRFK---EF--KLIAKN-LEE 756

Query:    61 IHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAP 120
             ++L+GTAI+ LP++I  L   + L LKD KNL SLP +I  L+ ++ + LSGCS L++ P
Sbjct:   757 LYLDGTAIKELPSTIGDLQKLISLKLKDCKNLLSLPDSIGNLKAIQEIILSGCSSLESFP 816

Query:   121 ETLGKVESLESAVETVTKFAK 141
             E    ++ L++ +   T   K
Sbjct:   817 EVNQNLKHLKTLLLDGTAIKK 837

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827639 AT2G17060 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 4.4e-09, P = 4.4e-09
 Identities = 59/195 (30%), Positives = 98/195 (50%)

Query:     3 SLKTLVLSGCLKLKKFPDIVQVLWD------GTDIRELS---FAIELLFRLV----QEFP 49
             +++ L L GC++LK  P  +Q +        G   R +S   F ++ L  L+    + F 
Sbjct:   705 NIRRLNLEGCIELKTLPQEMQEMESLIYLNLGGCTRLVSLPEFKLKSLKTLILSHCKNFE 764

Query:    50 EKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLH 109
             +     + L  ++L+GTAI+ +P SIE L   +LL+LKD + L SLP  +  LR L+ L 
Sbjct:   765 QFPVISECLEALYLQGTAIKCIPTSIENLQKLILLDLKDCEVLVSLPDCLGNLRSLQELI 824

Query:   110 LSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTADY 169
             LSGCSKLK  PE    ++S++  +   T   +  ++ Q          +K +  S +  Y
Sbjct:   825 LSGCSKLKFFPELKETMKSIKILLLDGTAIKQMPILLQCIQSQGHSVANKTLPNSLSDYY 884

Query:   170 LRD--FSIVVPGSEI 182
             L     S+ + G++I
Sbjct:   885 LPSSLLSLCLSGNDI 899

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
 Identities = 55/145 (37%), Positives = 76/145 (52%)

Query:     3 SLKTLVLSGCLKLKKFPDIVQVLW--------DGTDIRELSFAIEL--LFRLV------- 45
             +L+ L L GC  LKK P  +  L         D T +R L   I+   L  L+       
Sbjct:   667 NLERLNLEGCTSLKKLPSTINCLEKLIYLNLRDCTSLRSLPKGIKTQSLQTLILSGCSSL 726

Query:    46 QEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCL 105
             ++FP  + + + LL   L+GT I+ LP SI+      LLNLK+ K LK L S +  L+CL
Sbjct:   727 KKFPLISENVEVLL---LDGTVIKSLPESIQTFRRLALLNLKNCKKLKHLSSDLYKLKCL 783

Query:   106 RMLHLSGCSKLKNAPETLGKVESLE 130
             + L LSGCS+L+  PE    +ESLE
Sbjct:   784 QELILSGCSQLEVFPEIKEDMESLE 808

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2153207 AT5G45060 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 78/288 (27%), Positives = 125/288 (43%)

Query:     1 MKSLKTLVLSGCLKLKKFPDIVQ-----VLWDGTDIRELSFAIELLFRLVQEFPEKTSSK 55
             +K+L+ LVLSGC KLK+FP+I +     +L DGT I+ +     + +  +       S  
Sbjct:   772 LKTLQKLVLSGCSKLKEFPEINKSSLKILLLDGTSIKTMPQLPSVQYLCL-------SRN 824

Query:    56 DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSK 115
             D L+           LPA I  +S    L+LK    L  +P        L+ L   GCS 
Sbjct:   825 DHLIY----------LPAGINQVSQLTRLDLKYCTKLTYVPELPP---TLQYLDAHGCSS 871

Query:   116 LKNAPETLGKVESLESAVETV--TKFAKAELIAQKDSDSWKKNVDKGIKLSTTADYLRD- 172
             LKN  + L ++ S      T   T     E  A+++  S+ +   K   LS    +  + 
Sbjct:   872 LKNVAKPLARIMSTVQNHYTFNFTNCGNLEQAAKEEITSYAQR--KCQLLSDARKHYNEG 929

Query:   173 ----FSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVP--KYSL 226
                 FS   PG E+P WF ++   GS +     P  + + +L G A+C V   P  +  L
Sbjct:   930 SEALFSTCFPGCEVPSWFGHEA-VGSLLQRKLLPH-WHDKRLSGIALCAVVSFPDSQDQL 987

Query:   227 PYYIRPLPYPVHGLSINRKPTTPALGGIYLRK--QFGQAMSDHLFLYY 272
               +     + +     +  P T  +G I+ R+  +  +  SDH+F+ Y
Sbjct:   988 SCFSVTCTFKIKAEDKSWVPFTCPVG-IWTREGNKKDRIESDHVFIAY 1034

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 43/131 (32%), Positives = 71/131 (54%)

Query:     1 MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLE 60
             +K L    L+ C++LK  P  + ++    +   +S    L     + FPE + +  +L  
Sbjct:   671 LKGLSCFYLTNCIQLKDIP--IGIILKSLETVGMSGCSSL-----KHFPEISWNTRRL-- 721

Query:    61 IHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAP 120
              +L  T I  LP+SI  LS  V L++ D + L++LPS +  L  L+ L+L GC +L+N P
Sbjct:   722 -YLSSTKIEELPSSISRLSCLVKLDMSDCQRLRTLPSYLGHLVSLKSLNLDGCRRLENLP 780

Query:   121 ETLGKVESLES 131
             +TL  + SLE+
Sbjct:   781 DTLQNLTSLET 791

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
 Identities = 50/142 (35%), Positives = 74/142 (52%)

Query:     2 KSLKTLVLSGCLKL------KKFPDIVQV-LWDGTDIREL--SFAIELLFRLVQEFPEKT 52
             K+L+ L L GC  L      K+  +++ + L D T +  L   F I+ L  L+     K 
Sbjct:   657 KNLERLDLEGCTSLDLLGSVKQMNELIYLNLRDCTSLESLPKGFKIKSLKTLILSGCLKL 716

Query:    53 SS----KDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRML 108
                    + +  +HLEGTAI  +   IE L   +LLNLK+ + LK LP+ +  L+ L+ L
Sbjct:   717 KDFHIISESIESLHLEGTAIERVVEHIESLHSLILLNLKNCEKLKYLPNDLYKLKSLQEL 776

Query:   109 HLSGCSKLKNAPETLGKVESLE 130
              LSGCS L++ P    K+E LE
Sbjct:   777 VLSGCSALESLPPIKEKMECLE 798

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	397
PLN03210	1153	PLN03210, PLN03210, Resistant to P	8e-10
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-05

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 60.7 bits (147), Expect = 8e-10
 Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 25/160 (15%)

Query: 1   MKSLKTLVLSGCLKLKKFPDI-VQVLW---DGTDIRELSFAIEL----LFRLVQEFPEKT 52
           +KSL  L LSGC +LK FPDI   + W   D T I E    + L       L +   EK 
Sbjct: 703 LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKL 762

Query: 53  SSKDQLL------------EIHLEGT-AIRGLPASIELLSGNVLLNLKDRKNLKSLPSTI 99
             + Q L             + L    ++  LP+SI+ L     L +++  NL++LP+ I
Sbjct: 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822

Query: 100 NGLRCLRMLHLSGCSKLKNAPETLGKVESL---ESAVETV 136
           N L  L  L LSGCS+L+  P+    +  L    + +E V
Sbjct: 823 N-LESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEV 861

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 45/204 (22%), Positives = 73/204 (35%), Gaps = 46/204 (22%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLE 60
           ++SL++L LSGC +L+ FPDI       T+I +L                          
Sbjct: 824 LESLESLDLSGCSRLRTFPDI------STNISDL-------------------------- 851

Query: 61  IHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAP 120
            +L  T I  +P  IE  S    L++    NL+ +   I+ L+ L  +  S C  L  A 
Sbjct: 852 -NLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA- 909

Query: 121 ETLGKVESLESAVETVTKFAKAELIAQKDSDSWKKNVDKGIKLSTTADYLRDF---SIVV 177
                  S   +   V      + I  K   +   N      L   A   +      +++
Sbjct: 910 -------SWNGSPSEVAM--ATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLIL 960

Query: 178 PGSEIPEWFEYQNNEGSSITISTP 201
            G E+P +F ++    S   I   
Sbjct: 961 SGEEVPSYFTHRTTGASLTNIPLL 984

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	397
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.94
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.32
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.26
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.23
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.19
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.18
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.17
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.11
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.03
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.8
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.73
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.71
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.71
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.69
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.6
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.55
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.46
PLN03150	623	hypothetical protein; Provisional	98.44
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.27
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.22
PLN03150	623	hypothetical protein; Provisional	98.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.18
PRK15386	426	type III secretion protein GogB; Provisional	98.16
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.1
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.1
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.04
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.03
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.99
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.83
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.45
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.44
PRK15386	426	type III secretion protein GogB; Provisional	97.42
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.41
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.4
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.39
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.36
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.99
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.71
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.54
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.2
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.57
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.48
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.25
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.19
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	94.51
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.27
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.1
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.91
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	92.82
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.3
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.14
KOG2982	418	consensus Uncharacterized conserved protein [Funct	91.5
KOG2123	388	consensus Uncharacterized conserved protein [Funct	91.4
smart00370	26	LRR Leucine-rich repeats, outliers.	89.74
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.74
KOG2982	418	consensus Uncharacterized conserved protein [Funct	89.13
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	89.04
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.24
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	82.66
smart00370	26	LRR Leucine-rich repeats, outliers.	82.66
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.25

>PLN03210 Resistant to P

Probab=99.94  E-value=7.5e-26  Score=255.38  Aligned_cols=219  Identities=26%  Similarity=0.390  Sum_probs=132.3

Q ss_pred             CCCCcEEeccCCCCCccCCCcce----EEeecCCccccchhh--hhhhccc-----------------------------
Q 015983            1 MKSLKTLVLSGCLKLKKFPDIVQ----VLWDGTDIRELSFAI--ELLFRLV-----------------------------   45 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP~~~~----L~Ls~n~l~~Lp~si--~~L~~L~-----------------------------   45 (397)
                      |++|+.|+|+||+.++.+|....    |+|++|.++.+|..+  .+|..|.                             
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~  782 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR  782 (1153)
T ss_pred             CCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence            45777888888877777775433    888888888888654  1222111                             


Q ss_pred             ---------cccCccCCCCCCCCEEEeeCC-CCCcCCccccCCCCCCEEEecCCCCCC--------------------CC
Q 015983           46 ---------QEFPEKTSSKDQLLEIHLEGT-AIRGLPASIELLSGNVLLNLKDRKNLK--------------------SL   95 (397)
Q Consensus        46 ---------~~~P~~l~~l~~L~~L~Ls~~-~i~~lP~si~~L~~L~~L~Ls~c~~l~--------------------~L   95 (397)
                               ..+|..+++|++|+.|+|++| .++.+|..+ ++++|+.|+|++|+.+.                    .+
T Consensus       783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~i  861 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEV  861 (1153)
T ss_pred             eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccC
Confidence                     224555555666666666654 455555544 34445555554443332                    23


Q ss_pred             ChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccc--cCCCC--------------cccccCcC
Q 015983           96 PSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIA--QKDSD--------------SWKKNVDK  159 (397)
Q Consensus        96 P~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~--~l~~~--------------~~~~~~~~  159 (397)
                      |.++..+++|+.|+|++|++++.+|..+..++.|+.+++++|.  .|..++  ..+..              .+...+.+
T Consensus       862 P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~--~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~n  939 (1153)
T PLN03210        862 PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG--ALTEASWNGSPSEVAMATDNIHSKLPSTVCINFIN  939 (1153)
T ss_pred             hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc--ccccccCCCCchhhhhhcccccccCCchhcccccc
Confidence            4444455556666666666666665555555566666655553  222111  00000              01112345


Q ss_pred             ceeecccccccc---cceeecCCCCccccccccCCCCCeEE-EeCCCCCcCCCCceeEEEEEEEecCCC
Q 015983          160 GIKLSTTADYLR---DFSIVVPGSEIPEWFEYQNNEGSSIT-ISTPPKTYKNSKLLGYAMCCVFHVPKY  224 (397)
Q Consensus       160 ~~~l~~~~~~~~---~~~~~lPG~~IP~Wf~~qs~~Gssit-i~lp~~~~~~~~~~gf~~cvv~~~~~~  224 (397)
                      |+++.+.+....   ...+++||.++|+||.||+ .|++++ |.+|+.|+ ...|+||++|+|+++...
T Consensus       940 C~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~-~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~ 1006 (1153)
T PLN03210        940 CFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRT-TGASLTNIPLLHISP-CQPFFRFRACAVVDSESF 1006 (1153)
T ss_pred             ccCCCchhhhcccccceEEECCCccCchhccCCc-ccceeeeeccCCccc-CCCccceEEEEEEecCcc
Confidence            555554332211   1357899999999999999 999998 99999998 778999999999987753

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.32  E-value=4.4e-14  Score=124.09  Aligned_cols=138  Identities=22%  Similarity=0.306  Sum_probs=112.5

Q ss_pred             CCcEEeccCCCCCccCCCcce-------EEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCC
Q 015983            3 SLKTLVLSGCLKLKKFPDIVQ-------VLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGT   66 (397)
Q Consensus         3 sL~~L~LsgC~~L~~lP~~~~-------L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~   66 (397)
                      ..+.|-||+| ++..+|....       |++++|.|+++|.+|..|.+|.         ..+|..++.++.|+.|||.+|
T Consensus        34 ~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn  112 (264)
T KOG0617|consen   34 NITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN  112 (264)
T ss_pred             hhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc
Confidence            3456778886 5666664433       7888888999998888888876         567888888888889999888


Q ss_pred             CCC--cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983           67 AIR--GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        67 ~i~--~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      ++.  .+|..|..+..|+.|.|+. +.+..+|..+++|++|+.|.+.. +.+-++|..++.+..|+.|++.+|.++-++
T Consensus       113 nl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgnrl~vlp  189 (264)
T KOG0617|consen  113 NLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGNRLTVLP  189 (264)
T ss_pred             ccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence            887  6888888888888888888 78888998899999999999998 678889999999999999999998776543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.26  E-value=1.2e-11  Score=138.17  Aligned_cols=138  Identities=19%  Similarity=0.215  Sum_probs=79.9

Q ss_pred             CCCcEEeccCCCCCccCC-----CcceEEeecCCcc-ccchhhhhhhccc----------cccCccCCCCCCCCEEEeeC
Q 015983            2 KSLKTLVLSGCLKLKKFP-----DIVQVLWDGTDIR-ELSFAIELLFRLV----------QEFPEKTSSKDQLLEIHLEG   65 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP-----~~~~L~Ls~n~l~-~Lp~si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~   65 (397)
                      ++|++|+|++|...+.+|     .+..|+|++|.+. .+|..++++++|+          +.+|..++++++|++|+|++
T Consensus       118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  197 (968)
T PLN00113        118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS  197 (968)
T ss_pred             CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC
Confidence            455556665554333222     2333666666665 4566666655554          34566666666666666666


Q ss_pred             CCCC-cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcc
Q 015983           66 TAIR-GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKF  139 (397)
Q Consensus        66 ~~i~-~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~  139 (397)
                      |.+. .+|..++.+++|+.|+|++|+....+|..++++++|++|++++|...+.+|..++.+++|+.|++++|.+
T Consensus       198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  272 (968)
T PLN00113        198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL  272 (968)
T ss_pred             CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence            6655 4566666666666666666443345666666666666666666554445565556666666666665554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.23  E-value=1.7e-11  Score=137.04  Aligned_cols=139  Identities=19%  Similarity=0.202  Sum_probs=81.2

Q ss_pred             CCCCcEEeccCCCCCccCCC-------cceEEeecCCcc-ccchhhhhhhccc----------cccCccCCCCCCCCEEE
Q 015983            1 MKSLKTLVLSGCLKLKKFPD-------IVQVLWDGTDIR-ELSFAIELLFRLV----------QEFPEKTSSKDQLLEIH   62 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP~-------~~~L~Ls~n~l~-~Lp~si~~L~~L~----------~~~P~~l~~l~~L~~L~   62 (397)
                      +++|++|+|++|.....+|.       +..|+|++|.+. .+|..++++++|+          +.+|..++.|++|++|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            35677777777754334443       233777777665 5666666666554          34566666666666666


Q ss_pred             eeCCCCC-cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcc
Q 015983           63 LEGTAIR-GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKF  139 (397)
Q Consensus        63 Ls~~~i~-~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~  139 (397)
                      |++|.+. .+|..++.+++|+.|++++|+....+|..++++++|++|++++|.....+|..+.++++|+.|++++|.+
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            6666665 5566666666666666666443345555566666666666665544444555555555555555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.19  E-value=8.6e-12  Score=122.04  Aligned_cols=91  Identities=24%  Similarity=0.364  Sum_probs=73.2

Q ss_pred             CccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChh------------------------ccCCCc
Q 015983           49 PEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPST------------------------INGLRC  104 (397)
Q Consensus        49 P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~------------------------i~~L~s  104 (397)
                      |..++.+++|..|+|++|.+-.+|..++.+..|+.|+++. |++..+|..                        +.++.+
T Consensus       428 ~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n  506 (565)
T KOG0472|consen  428 PLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN  506 (565)
T ss_pred             hHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccc-cccccchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence            3445667888899999998889998888888899999987 466554433                        557778


Q ss_pred             CceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983          105 LRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus       105 L~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~  141 (397)
                      |.+|||.+ +.++++|..+++|.+|+.|.+.||+|+.
T Consensus       507 L~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  507 LTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             cceeccCC-CchhhCChhhccccceeEEEecCCccCC
Confidence            88888887 6888899889999999999999998874

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.18  E-value=2.2e-12  Score=131.76  Aligned_cols=114  Identities=26%  Similarity=0.327  Sum_probs=48.2

Q ss_pred             EEeecCCccccchhhhhhhcccc----ccC------ccCCCCCCCCEEEeeCCCC--CcCCccccCCCCCCEEEecCCCC
Q 015983           24 VLWDGTDIRELSFAIELLFRLVQ----EFP------EKTSSKDQLLEIHLEGTAI--RGLPASIELLSGNVLLNLKDRKN   91 (397)
Q Consensus        24 L~Ls~n~l~~Lp~si~~L~~L~~----~~P------~~l~~l~~L~~L~Ls~~~i--~~lP~si~~L~~L~~L~Ls~c~~   91 (397)
                      |+|+.|.+..||+.+..|..|+.    .=|      .-+..|++|+.|.+++++-  ..+|.++..|.+|..++++. |+
T Consensus       155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~  233 (1255)
T KOG0444|consen  155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NN  233 (1255)
T ss_pred             hccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cC
Confidence            55555666666665554444330    000      0011233344444444322  23444444444555555543 44


Q ss_pred             CCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcc
Q 015983           92 LKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKF  139 (397)
Q Consensus        92 l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~  139 (397)
                      +..+|+.+.++.+|+.|+||+ +.+..+.-..+...+|++|+++.|++
T Consensus       234 Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQL  280 (1255)
T KOG0444|consen  234 LPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQL  280 (1255)
T ss_pred             CCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccchh
Confidence            444455444444555454444 23333333333333334444443333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.17  E-value=3.2e-12  Score=130.63  Aligned_cols=136  Identities=22%  Similarity=0.351  Sum_probs=96.7

Q ss_pred             CCCCcEEeccCCCCCccCCCcce-------EEeecCCccccchhhh-hhhccc---------cccCccCCCCCCCCEEEe
Q 015983            1 MKSLKTLVLSGCLKLKKFPDIVQ-------VLWDGTDIRELSFAIE-LLFRLV---------QEFPEKTSSKDQLLEIHL   63 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP~~~~-------L~Ls~n~l~~Lp~si~-~L~~L~---------~~~P~~l~~l~~L~~L~L   63 (397)
                      |+-|.+||||+| .|++.|....       |+|++|+|..||.++. +|+.|.         +.+|+-+..+.+|+.|.|
T Consensus       102 l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L  180 (1255)
T KOG0444|consen  102 LKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKL  180 (1255)
T ss_pred             cccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhc
Confidence            456888999997 6888886543       8999999999998763 444432         444554455555555555


Q ss_pred             eCCCCC-----cCCccccCCCCCCEEEecCCC-CCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCC
Q 015983           64 EGTAIR-----GLPASIELLSGNVLLNLKDRK-NLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVT  137 (397)
Q Consensus        64 s~~~i~-----~lP~si~~L~~L~~L~Ls~c~-~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n  137 (397)
                      ++|.+.     ++|    .+++|+.|.+++-+ -+..+|.++..|.+|..+|+|. ++|..+|+.+-++++|+.|++++|
T Consensus       181 s~NPL~hfQLrQLP----smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  181 SNNPLNHFQLRQLP----SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGN  255 (1255)
T ss_pred             CCChhhHHHHhcCc----cchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcC
Confidence            555433     233    24455555555422 2335788888999999999997 789999999999999999999999


Q ss_pred             ccccc
Q 015983          138 KFAKA  142 (397)
Q Consensus       138 ~~~~L  142 (397)
                      .+++|
T Consensus       256 ~iteL  260 (1255)
T KOG0444|consen  256 KITEL  260 (1255)
T ss_pred             ceeee
Confidence            98864

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.11  E-value=2.5e-12  Score=125.71  Aligned_cols=91  Identities=27%  Similarity=0.408  Sum_probs=55.9

Q ss_pred             cccCccCCCCCCCCEEEeeCCCCCcCCcccc------------------------CCCCCCEEEecCCCCCCCCChhccC
Q 015983           46 QEFPEKTSSKDQLLEIHLEGTAIRGLPASIE------------------------LLSGNVLLNLKDRKNLKSLPSTING  101 (397)
Q Consensus        46 ~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~------------------------~L~~L~~L~Ls~c~~l~~LP~~i~~  101 (397)
                      +.+|+.++.|.+|+.|||..|.|..+| .|.                        +|.+|..|||+. |+++++|..+..
T Consensus       196 ~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~cl  273 (565)
T KOG0472|consen  196 ETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICL  273 (565)
T ss_pred             hcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHHH
Confidence            678888888888888888888887777 333                        455555555555 455555555555


Q ss_pred             CCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccc
Q 015983          102 LRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFA  140 (397)
Q Consensus       102 L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~  140 (397)
                      |.+|++||+++ +.+..+|..++++ .|+.|.+.||+++
T Consensus       274 LrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  274 LRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             hhhhhhhcccC-CccccCCcccccc-eeeehhhcCCchH
Confidence            55555555555 3455555555555 4555555555544

>PLN03210 Resistant to P

Probab=99.03  E-value=7.7e-10  Score=125.91  Aligned_cols=115  Identities=28%  Similarity=0.392  Sum_probs=65.9

Q ss_pred             EEeecCCccccchhhhhhhccc----------cccCccCCCCCCCCEEEeeCC-CCCcCCccccCCCCCCEEEecCCCCC
Q 015983           24 VLWDGTDIRELSFAIELLFRLV----------QEFPEKTSSKDQLLEIHLEGT-AIRGLPASIELLSGNVLLNLKDRKNL   92 (397)
Q Consensus        24 L~Ls~n~l~~Lp~si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~~-~i~~lP~si~~L~~L~~L~Ls~c~~l   92 (397)
                      |+|.++.+..+|..+..++.|+          ..+|. +..+++|+.|+|++| .+.++|.+++++++|+.|++++|+.+
T Consensus       616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L  694 (1153)
T PLN03210        616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL  694 (1153)
T ss_pred             EECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence            5555555555555544444443          22332 445566666666665 45566666666666666666666666


Q ss_pred             CCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983           93 KSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        93 ~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      ..+|..+ ++++|+.|++++|..++.+|...   .+|+.|++++|.+..++
T Consensus       695 ~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~---~nL~~L~L~~n~i~~lP  741 (1153)
T PLN03210        695 EILPTGI-NLKSLYRLNLSGCSRLKSFPDIS---TNISWLDLDETAIEEFP  741 (1153)
T ss_pred             CccCCcC-CCCCCCEEeCCCCCCcccccccc---CCcCeeecCCCcccccc
Confidence            6666544 56666666666666666665432   34556666666654433

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.96  E-value=1e-10  Score=103.02  Aligned_cols=102  Identities=21%  Similarity=0.242  Sum_probs=62.2

Q ss_pred             EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCC
Q 015983           24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLR  103 (397)
Q Consensus        24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~  103 (397)
                      |-|+.|.++.+|+.|..|              .+|+.|++.+|.|+++|.+|+.|++|+.|+++- +++..+|..++.++
T Consensus        38 LtLSHNKl~~vppnia~l--------------~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p  102 (264)
T KOG0617|consen   38 LTLSHNKLTVVPPNIAEL--------------KNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFP  102 (264)
T ss_pred             hhcccCceeecCCcHHHh--------------hhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCc
Confidence            888999999998888554              455666666666666666666666666666653 55666666666666


Q ss_pred             cCceeeeecccCC-ccCCcccCCCCCCcEEECCCCccc
Q 015983          104 CLRMLHLSGCSKL-KNAPETLGKVESLESAVETVTKFA  140 (397)
Q Consensus       104 sL~~L~Ls~C~~L-~~lP~~~~~L~~L~~L~ls~n~~~  140 (397)
                      .|+.|||++|+.- ..+|..+..+..|+.|+++.|.|.
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe  140 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE  140 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence            6666666654322 234444444445555555555443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.88  E-value=2.2e-10  Score=121.87  Aligned_cols=86  Identities=24%  Similarity=0.348  Sum_probs=50.2

Q ss_pred             CCCCCCCEEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcE
Q 015983           53 SSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLES  131 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~  131 (397)
                      .++++|+.|+|++|.+..+|.+ +.+|..|+.|+|+| |+++.||..+..+..|++|...+ +.+..+| .+..++.|+.
T Consensus       380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKV  456 (1081)
T ss_pred             ccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceE
Confidence            3455566666666666655543 45555566666665 45666666555566666665555 4555566 3455666666


Q ss_pred             EECCCCcccc
Q 015983          132 AVETVTKFAK  141 (397)
Q Consensus       132 L~ls~n~~~~  141 (397)
                      +|++.|+++.
T Consensus       457 lDlS~N~L~~  466 (1081)
T KOG0618|consen  457 LDLSCNNLSE  466 (1081)
T ss_pred             Eecccchhhh
Confidence            6666666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.85  E-value=4.4e-09  Score=113.72  Aligned_cols=75  Identities=24%  Similarity=0.236  Sum_probs=33.8

Q ss_pred             CCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCC
Q 015983           58 LLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVT  137 (397)
Q Consensus        58 L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n  137 (397)
                      |+.|+|++|.|+.+|...   ++|+.|++++ |.+..+|..+   .+|+.|++++ +.+..+|..+..+.+|+.|++++|
T Consensus       384 L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~-N~LssIP~l~---~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N  455 (788)
T PRK15387        384 LKELIVSGNRLTSLPVLP---SELKELMVSG-NRLTSLPMLP---SGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGN  455 (788)
T ss_pred             cceEEecCCcccCCCCcc---cCCCEEEccC-CcCCCCCcch---hhhhhhhhcc-CcccccChHHhhccCCCeEECCCC
Confidence            444444444444444321   2344444444 3344444321   2344455544 344455555555555555555555


Q ss_pred             ccc
Q 015983          138 KFA  140 (397)
Q Consensus       138 ~~~  140 (397)
                      +++
T Consensus       456 ~Ls  458 (788)
T PRK15387        456 PLS  458 (788)
T ss_pred             CCC
Confidence            544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.80  E-value=1.3e-08  Score=110.20  Aligned_cols=79  Identities=25%  Similarity=0.351  Sum_probs=44.3

Q ss_pred             CCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCC
Q 015983           57 QLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETV  136 (397)
Q Consensus        57 ~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~  136 (397)
                      +|+.|+|++|.++.+|..+.  ++|+.|++++ |.+..+|..+  .++|+.|++++| .+..+|..+.  ++|+.|++++
T Consensus       284 sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~l--~~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~  355 (754)
T PRK15370        284 ELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPETL--PPGLKTLEAGEN-ALTSLPASLP--PELQVLDVSK  355 (754)
T ss_pred             CCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCccc--cccceeccccCC-ccccCChhhc--CcccEEECCC
Confidence            45555555555554443322  2344444444 3444444332  256778888774 5666776443  5788888888


Q ss_pred             Ccccccc
Q 015983          137 TKFAKAE  143 (397)
Q Consensus       137 n~~~~L~  143 (397)
                      |+++.++
T Consensus       356 N~L~~LP  362 (754)
T PRK15370        356 NQITVLP  362 (754)
T ss_pred             CCCCcCC
Confidence            8776544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.73  E-value=2.7e-08  Score=107.63  Aligned_cols=127  Identities=21%  Similarity=0.291  Sum_probs=66.9

Q ss_pred             CCcEEeccCCCCCccCCCc----ceEEeecCCccccchhhhhhhccc------cccCccCCCCCCCCEEEeeCCCCCcCC
Q 015983            3 SLKTLVLSGCLKLKKFPDI----VQVLWDGTDIRELSFAIELLFRLV------QEFPEKTSSKDQLLEIHLEGTAIRGLP   72 (397)
Q Consensus         3 sL~~L~LsgC~~L~~lP~~----~~L~Ls~n~l~~Lp~si~~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~~lP   72 (397)
                      +|+.|+|++| .++.+|..    ..|+|++|.|+.+|..+.+|+.|.      ..+|..   +++|+.|+|++|.|+.+|
T Consensus       223 ~L~~L~L~~N-~Lt~LP~lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP  298 (788)
T PRK15387        223 HITTLVIPDN-NLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLP  298 (788)
T ss_pred             CCCEEEccCC-cCCCCCCCCCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhc---hhhcCEEECcCCcccccc
Confidence            3455555554 34444432    226666666666554444444432      223321   234556666666666666


Q ss_pred             ccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccc
Q 015983           73 ASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAEL  144 (397)
Q Consensus        73 ~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~  144 (397)
                      ..   +++|+.|+|++ |.+..+|..+   .+|+.|++++ +.+..+|..+   .+|+.|++++|+++.++.
T Consensus       299 ~~---p~~L~~LdLS~-N~L~~Lp~lp---~~L~~L~Ls~-N~L~~LP~lp---~~Lq~LdLS~N~Ls~LP~  359 (788)
T PRK15387        299 VL---PPGLQELSVSD-NQLASLPALP---SELCKLWAYN-NQLTSLPTLP---SGLQELSVSDNQLASLPT  359 (788)
T ss_pred             cc---ccccceeECCC-CccccCCCCc---cccccccccc-Cccccccccc---cccceEecCCCccCCCCC
Confidence            42   34566777766 4666665532   3455555655 3455555432   346667777776665543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.73  E-value=1.1e-08  Score=110.82  Aligned_cols=130  Identities=18%  Similarity=0.299  Sum_probs=79.4

Q ss_pred             CCcEEeccCCCCCccCCC-----cceEEeecCCccccchhhh-hhhccc------cccCccCCCCCCCCEEEeeCCCCCc
Q 015983            3 SLKTLVLSGCLKLKKFPD-----IVQVLWDGTDIRELSFAIE-LLFRLV------QEFPEKTSSKDQLLEIHLEGTAIRG   70 (397)
Q Consensus         3 sL~~L~LsgC~~L~~lP~-----~~~L~Ls~n~l~~Lp~si~-~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~~   70 (397)
                      +|+.|+|++| .+..+|.     +..|+|++|.|+.+|..+. +|..|.      ..+|..+.  .+|+.|+|++|.++.
T Consensus       242 ~L~~L~Ls~N-~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        242 TIQEMELSIN-RITELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA  318 (754)
T ss_pred             cccEEECcCC-ccCcCChhHhCCCCEEECcCCccCccccccCCCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc
Confidence            5777788777 4556663     2237777777777776553 343332      33443322  356777777777777


Q ss_pred             CCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983           71 LPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        71 lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      +|..+.  ++|+.|++++ +.+..+|..+  .++|+.|++++| .+..+|..+.  +.|+.|++++|+++.++
T Consensus       319 LP~~l~--~sL~~L~Ls~-N~Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP~~lp--~~L~~LdLs~N~Lt~LP  383 (754)
T PRK15370        319 LPETLP--PGLKTLEAGE-NALTSLPASL--PPELQVLDVSKN-QITVLPETLP--PTITTLDVSRNALTNLP  383 (754)
T ss_pred             CCcccc--ccceeccccC-CccccCChhh--cCcccEEECCCC-CCCcCChhhc--CCcCEEECCCCcCCCCC
Confidence            765543  4677777776 4566677654  257777777774 5666665442  46777777777665543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.71  E-value=3.3e-09  Score=108.31  Aligned_cols=116  Identities=26%  Similarity=0.303  Sum_probs=67.2

Q ss_pred             EEeecCCccccch-hhhhhhccc----------cccCccCCCCCCCCEEEeeCCCCCcCCc-cccCCCCCCEEEecCCCC
Q 015983           24 VLWDGTDIRELSF-AIELLFRLV----------QEFPEKTSSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDRKN   91 (397)
Q Consensus        24 L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~   91 (397)
                      |+|+.|.++++.. ++.+|++|+          +.-++..+..+.|++|+|++|+|+++++ ++..|+.|+.|+|++ |.
T Consensus       274 l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~-Ns  352 (873)
T KOG4194|consen  274 LNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH-NS  352 (873)
T ss_pred             eecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc-cc
Confidence            6666666666654 334555554          2234445556778888888888887764 366666666666666 45


Q ss_pred             CCCCCh-h---------------------------ccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcccc
Q 015983           92 LKSLPS-T---------------------------INGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAK  141 (397)
Q Consensus        92 l~~LP~-~---------------------------i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~  141 (397)
                      +.+|-+ .                           +.+|++|+.|++.| +++++||. .+..++.|+.|++.+|.+.+
T Consensus       353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCccee
Confidence            554432 2                           33455555555555 35555553 45555566666666555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.71  E-value=9.5e-10  Score=111.93  Aligned_cols=182  Identities=20%  Similarity=0.226  Sum_probs=116.4

Q ss_pred             EEeccCCCCCccCCCcce---------EEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCCC
Q 015983            6 TLVLSGCLKLKKFPDIVQ---------VLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGTA   67 (397)
Q Consensus         6 ~L~LsgC~~L~~lP~~~~---------L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~~   67 (397)
                      .|.|+| .+|+.||--..         .+|+.|.+.++|.....+..|.         ..+|+.+.++..|++|||+.|.
T Consensus        54 ~l~Ls~-rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   54 RLLLSG-RRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             cccccc-chhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence            355666 57788874322         7888888888887765554443         6678878888888888888888


Q ss_pred             CCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccc-cc
Q 015983           68 IRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAEL-IA  146 (397)
Q Consensus        68 i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~-l~  146 (397)
                      ++.+|..+..|+ |+.|-+++ |+++.+|..|+.+..|..|+.+. +.+.++|..++.+.+|+.|.+.-|++..++. +.
T Consensus       133 lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrRn~l~~lp~El~  209 (722)
T KOG0532|consen  133 LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC  209 (722)
T ss_pred             hhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh
Confidence            888887777665 77777777 67888888777777777887776 4667777666666666666666665544321 11


Q ss_pred             cCCC------CcccccCcCceeecc-------cccc--cccceeecCCC-CccccccccCCC
Q 015983          147 QKDS------DSWKKNVDKGIKLST-------TADY--LRDFSIVVPGS-EIPEWFEYQNNE  192 (397)
Q Consensus       147 ~l~~------~~~~~~~~~~~~l~~-------~~~~--~~~~~~~lPG~-~IP~Wf~~qs~~  192 (397)
                      .|+-      ..-...+|-+|.-..       +-+.  .+..++|.-|. .|=+|++-|+ .
T Consensus       210 ~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA-~  270 (722)
T KOG0532|consen  210 SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQA-C  270 (722)
T ss_pred             CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchh-c
Confidence            1111      111123444441111       1111  23356788886 6778888887 5

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.69  E-value=2.1e-09  Score=114.53  Aligned_cols=89  Identities=26%  Similarity=0.381  Sum_probs=69.5

Q ss_pred             cccCcc-CCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCcc--CCcc
Q 015983           46 QEFPEK-TSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKN--APET  122 (397)
Q Consensus        46 ~~~P~~-l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~--lP~~  122 (397)
                      ..||.. +.+++.|++|+|+||.++.||..+.++..|++|...+ |.+..+| .+..++.|+.+|++. +.|..  +|..
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~  472 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEA  472 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEeccc-chhhhhhhhhh
Confidence            345543 4677889999999999999999999999999998887 7888889 478889999999986 55554  3443


Q ss_pred             cCCCCCCcEEECCCCc
Q 015983          123 LGKVESLESAVETVTK  138 (397)
Q Consensus       123 ~~~L~~L~~L~ls~n~  138 (397)
                      ... +.|++|+++||.
T Consensus       473 ~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  473 LPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             CCC-cccceeeccCCc
Confidence            332 688999999986

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.60  E-value=4.4e-08  Score=87.98  Aligned_cols=101  Identities=20%  Similarity=0.257  Sum_probs=41.5

Q ss_pred             EEeecCCccccchhhhhhhccccccCccCC-CCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhc-cC
Q 015983           24 VLWDGTDIRELSFAIELLFRLVQEFPEKTS-SKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTI-NG  101 (397)
Q Consensus        24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~-~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i-~~  101 (397)
                      |+|++|.|+.+. .              ++ .+.+|+.|+|++|.|+.++ .+..+++|+.|++++ |.+.+++..+ ..
T Consensus        24 L~L~~n~I~~Ie-~--------------L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~   86 (175)
T PF14580_consen   24 LNLRGNQISTIE-N--------------LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKN   86 (175)
T ss_dssp             -------------S----------------TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH
T ss_pred             cccccccccccc-c--------------hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHh
Confidence            777777776542 1              23 4678899999999999886 577789999999998 7899887654 46


Q ss_pred             CCcCceeeeecccCCccCCc--ccCCCCCCcEEECCCCccccc
Q 015983          102 LRCLRMLHLSGCSKLKNAPE--TLGKVESLESAVETVTKFAKA  142 (397)
Q Consensus       102 L~sL~~L~Ls~C~~L~~lP~--~~~~L~~L~~L~ls~n~~~~L  142 (397)
                      +++|+.|++++ +++..+-+  .+..++.|+.|++.+|++++.
T Consensus        87 lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   87 LPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             -TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             CCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            89999999988 56666543  356788899999999988753

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.55  E-value=8e-09  Score=98.25  Aligned_cols=124  Identities=23%  Similarity=0.263  Sum_probs=82.8

Q ss_pred             CCcEEeccCCC------CCccCCCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcccc
Q 015983            3 SLKTLVLSGCL------KLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIE   76 (397)
Q Consensus         3 sL~~L~LsgC~------~L~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~   76 (397)
                      .|+.||||+|.      ..+-+|.+..|+++.|.|..+..               +..+.+|+.|||++|.++++-..=-
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n---------------La~L~~L~~LDLS~N~Ls~~~Gwh~  349 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN---------------LAELPQLQLLDLSGNLLAECVGWHL  349 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEeccccceeeehh---------------hhhcccceEeecccchhHhhhhhHh
Confidence            46677777762      12335555557777777766532               2456677888888887776665555


Q ss_pred             CCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCC--cccCCCCCCcEEECCCCccccccc
Q 015983           77 LLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAP--ETLGKVESLESAVETVTKFAKAEL  144 (397)
Q Consensus        77 ~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP--~~~~~L~~L~~L~ls~n~~~~L~~  144 (397)
                      .|.+.+.|.|++ |.+.++.. +++|-+|..||+++ ++++.+-  ..+|+|++|+.+.+.+|++..+..
T Consensus       350 KLGNIKtL~La~-N~iE~LSG-L~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  350 KLGNIKTLKLAQ-NKIETLSG-LRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhcCEeeeehhh-hhHhhhhh-hHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            666777788877 56766644 66777888888888 4565553  357788888888888887765443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.52  E-value=8e-08  Score=98.40  Aligned_cols=115  Identities=17%  Similarity=0.140  Sum_probs=48.4

Q ss_pred             EEeecCCccccchhhh-hhhccc------cccC----ccCCCCCCCCEEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCC
Q 015983           24 VLWDGTDIRELSFAIE-LLFRLV------QEFP----EKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKN   91 (397)
Q Consensus        24 L~Ls~n~l~~Lp~si~-~L~~L~------~~~P----~~l~~l~~L~~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~   91 (397)
                      |.|+.|.|+.||.-+. +|.+|+      ..+-    -.+..+++|+.|.|..|.|..+-.+ |..|.+++.|+|.. |+
T Consensus       202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~  280 (873)
T KOG4194|consen  202 LKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NR  280 (873)
T ss_pred             eecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-ch
Confidence            5666677777765433 355543      0000    0123334444444444444444332 33344444444444 34


Q ss_pred             CCCCCh-hccCCCcCceeeeecccCCccC-CcccCCCCCCcEEECCCCccc
Q 015983           92 LKSLPS-TINGLRCLRMLHLSGCSKLKNA-PETLGKVESLESAVETVTKFA  140 (397)
Q Consensus        92 l~~LP~-~i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~~L~ls~n~~~  140 (397)
                      +..+-+ ++.+|++|+.|+|++| .+..+ ++...-.++|+.|+++.|.++
T Consensus       281 l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  281 LQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEeccccccc
Confidence            443322 3344444444444442 22222 222333344444444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.46  E-value=2e-08  Score=102.44  Aligned_cols=129  Identities=24%  Similarity=0.314  Sum_probs=72.2

Q ss_pred             EeccCCCCCccCCCcce-------EEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCCCCCc
Q 015983            7 LVLSGCLKLKKFPDIVQ-------VLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGTAIRG   70 (397)
Q Consensus         7 L~LsgC~~L~~lP~~~~-------L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~~i~~   70 (397)
                      .+|+.| ++.++|.-..       |.|..|.+..+|..+.+|..|.         ..+|..++.++ |+.|-+++|+++.
T Consensus        80 aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~  157 (722)
T KOG0532|consen   80 ADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTS  157 (722)
T ss_pred             hhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcccc
Confidence            456664 4556664332       5556666666666666655543         44555555554 6666666666666


Q ss_pred             CCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccc
Q 015983           71 LPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFA  140 (397)
Q Consensus        71 lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~  140 (397)
                      +|..|+.+..|..|+.+. +.+.++|..+++|.+|+.|.+.. +.+..+|+.+..|+ |..||+++|++.
T Consensus       158 lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~Lp-Li~lDfScNkis  224 (722)
T KOG0532|consen  158 LPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLP-LIRLDFSCNKIS  224 (722)
T ss_pred             CCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCc-eeeeecccCcee
Confidence            666666666666666665 45666666666665555555554 34444444444332 444444444443

>PLN03150 hypothetical protein; Provisional

Probab=98.44  E-value=4.5e-07  Score=97.08  Aligned_cols=83  Identities=23%  Similarity=0.299  Sum_probs=51.4

Q ss_pred             CCEEEeeCCCCC-cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCC
Q 015983           58 LLEIHLEGTAIR-GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETV  136 (397)
Q Consensus        58 L~~L~Ls~~~i~-~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~  136 (397)
                      ++.|+|++|.++ .+|..++.|++|+.|+|++|+....+|..++.+++|+.|+|++|...+.+|..++++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            556666666665 5566666666666666666433335666666666666666666554456666666666666666666


Q ss_pred             Cccc
Q 015983          137 TKFA  140 (397)
Q Consensus       137 n~~~  140 (397)
                      |.++
T Consensus       500 N~l~  503 (623)
T PLN03150        500 NSLS  503 (623)
T ss_pred             Cccc
Confidence            6554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.27  E-value=6e-07  Score=90.45  Aligned_cols=116  Identities=22%  Similarity=0.290  Sum_probs=76.8

Q ss_pred             eEEeecCCccccchhhhhhh-ccc---------cccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCC
Q 015983           23 QVLWDGTDIRELSFAIELLF-RLV---------QEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNL   92 (397)
Q Consensus        23 ~L~Ls~n~l~~Lp~si~~L~-~L~---------~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l   92 (397)
                      .|++.+|.++++|..+..++ .|.         ..+|..++.+++|+.|++++|.++++|...+.++.|+.|++++ +.+
T Consensus       120 ~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~-N~i  198 (394)
T COG4886         120 SLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKI  198 (394)
T ss_pred             EEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC-Ccc
Confidence            36777777777766554432 332         4454556777888888888888888887777777888888887 678


Q ss_pred             CCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccc
Q 015983           93 KSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFA  140 (397)
Q Consensus        93 ~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~  140 (397)
                      ..+|..+..+..|+.|.++++ .+..++..+..+..+..+.+.+|.+.
T Consensus       199 ~~l~~~~~~~~~L~~l~~~~N-~~~~~~~~~~~~~~l~~l~l~~n~~~  245 (394)
T COG4886         199 SDLPPEIELLSALEELDLSNN-SIIELLSSLSNLKNLSGLELSNNKLE  245 (394)
T ss_pred             ccCchhhhhhhhhhhhhhcCC-cceecchhhhhcccccccccCCceee
Confidence            888776666666777777774 24444444555555555555555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.22  E-value=9.5e-07  Score=65.03  Aligned_cols=57  Identities=30%  Similarity=0.451  Sum_probs=41.0

Q ss_pred             CCCCEEEeeCCCCCcCCc-cccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecc
Q 015983           56 DQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGC  113 (397)
Q Consensus        56 ~~L~~L~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C  113 (397)
                      ++|++|+|++|.|+.+|. .+..+++|+.|++++ +.+..+|. .+.++++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence            357777888777777774 467777777777776 56666653 6677777777777775

...

>PLN03150 hypothetical protein; Provisional

Probab=98.18  E-value=2.4e-06  Score=91.58  Aligned_cols=91  Identities=29%  Similarity=0.365  Sum_probs=69.0

Q ss_pred             ccCccCCCCCCCCEEEeeCCCCC-cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCC
Q 015983           47 EFPEKTSSKDQLLEIHLEGTAIR-GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGK  125 (397)
Q Consensus        47 ~~P~~l~~l~~L~~L~Ls~~~i~-~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~  125 (397)
                      .+|..++.|++|+.|+|++|.++ .+|..++.+++|+.|+|++|+....+|..+++|++|+.|+|++|...+.+|..++.
T Consensus       433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG  512 (623)
T ss_pred             cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence            44555577888889999988887 78888888889999999885444578888888889999999887766788876654


Q ss_pred             C-CCCcEEECCCC
Q 015983          126 V-ESLESAVETVT  137 (397)
Q Consensus       126 L-~~L~~L~ls~n  137 (397)
                      + ..+..+++.+|
T Consensus       513 ~~~~~~~l~~~~N  525 (623)
T PLN03150        513 RLLHRASFNFTDN  525 (623)
T ss_pred             ccccCceEEecCC
Confidence            3 34455666655

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.18  E-value=9e-07  Score=89.18  Aligned_cols=140  Identities=26%  Similarity=0.410  Sum_probs=102.7

Q ss_pred             CCcEEeccCCCCCccCCC--------cceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983            3 SLKTLVLSGCLKLKKFPD--------IVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG   65 (397)
Q Consensus         3 sL~~L~LsgC~~L~~lP~--------~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~   65 (397)
                      .++.|++.++ .+..+|.        +..|+++.|.+..+|..++.++.|.         ..+|...+.+++|+.|++++
T Consensus       117 ~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~  195 (394)
T COG4886         117 NLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG  195 (394)
T ss_pred             ceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence            4667777775 3333332        2337778888888876676666665         45555555778899999999


Q ss_pred             CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccccc
Q 015983           66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELI  145 (397)
Q Consensus        66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l  145 (397)
                      |.++.+|..+..+..|+.|.+++ +.+..++..+..+..+..|.+.+ +.+..++..++.+.+|+.|++++|.++.+..+
T Consensus       196 N~i~~l~~~~~~~~~L~~l~~~~-N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~  273 (394)
T COG4886         196 NKISDLPPEIELLSALEELDLSN-NSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNNQISSISSL  273 (394)
T ss_pred             CccccCchhhhhhhhhhhhhhcC-CcceecchhhhhcccccccccCC-ceeeeccchhccccccceeccccccccccccc
Confidence            99999998887778899999987 44666777788888888888766 56777677788888888888888887776543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.16  E-value=4.9e-06  Score=83.78  Aligned_cols=56  Identities=21%  Similarity=0.475  Sum_probs=33.7

Q ss_pred             CCCcEEeccCCCCCccCCCcc----eEEeec-CCccccchhhhhhhccccccCccCCCCCCCCEEEeeCC-CCCcCCcc
Q 015983            2 KSLKTLVLSGCLKLKKFPDIV----QVLWDG-TDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGT-AIRGLPAS   74 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP~~~----~L~Ls~-n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~-~i~~lP~s   74 (397)
                      .+|+.|++++| .++.+|.+-    .|.+++ +.++.+|..+          |      .+|++|++++| .+..+|.+
T Consensus        52 ~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L----------P------~nLe~L~Ls~Cs~L~sLP~s  113 (426)
T PRK15386         52 RASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSI----------P------EGLEKLTVCHCPEISGLPES  113 (426)
T ss_pred             cCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchh----------h------hhhhheEccCcccccccccc
Confidence            56788888888 677777432    266665 4455555332          1      35666666666 56666653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.13  E-value=8.9e-07  Score=97.64  Aligned_cols=96  Identities=27%  Similarity=0.397  Sum_probs=61.4

Q ss_pred             CCcEEeccCCCC---------CccCCCcceEEeecC-CccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCC
Q 015983            3 SLKTLVLSGCLK---------LKKFPDIVQVLWDGT-DIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLP   72 (397)
Q Consensus         3 sL~~L~LsgC~~---------L~~lP~~~~L~Ls~n-~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP   72 (397)
                      .|++|-+.++..         +..+|.+..|||++| .+.+||.+|              +.+-+|++|+|+++.|+.+|
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I--------------~~Li~LryL~L~~t~I~~LP  611 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI--------------GELVHLRYLDLSDTGISHLP  611 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH--------------hhhhhhhcccccCCCccccc
Confidence            355666666532         334444444666653 345555555              34556777777777777777


Q ss_pred             ccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeec
Q 015983           73 ASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSG  112 (397)
Q Consensus        73 ~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~  112 (397)
                      .++++|++|.+|++.....+..+|..+..|++|++|.+..
T Consensus       612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  612 SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             hHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            7777777777777777666666666666677777777765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.10  E-value=1.7e-06  Score=77.77  Aligned_cols=89  Identities=21%  Similarity=0.359  Sum_probs=32.5

Q ss_pred             CCCCCCEEEeeCCCCCcCCcccc-CCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCccc-CCCCCCcE
Q 015983           54 SKDQLLEIHLEGTAIRGLPASIE-LLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETL-GKVESLES  131 (397)
Q Consensus        54 ~l~~L~~L~Ls~~~i~~lP~si~-~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~-~~L~~L~~  131 (397)
                      +...+++|+|++|.|+.+. .++ .+.+|+.|+|++ |.+..++. +..++.|+.|++++ +.+..+++.+ ..+++|+.
T Consensus        17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~-N~I~~l~~-l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSN-NQITKLEG-LPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TT-S--S--TT-----TT--EEE--S-S---S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccccc-chhhhhcCCCEEECCC-CCCccccC-ccChhhhhhcccCC-CCCCccccchHHhCCcCCE
Confidence            3346899999999999875 455 588999999999 78999875 77899999999999 6888887544 46899999


Q ss_pred             EECCCCccccccccc
Q 015983          132 AVETVTKFAKAELIA  146 (397)
Q Consensus       132 L~ls~n~~~~L~~l~  146 (397)
                      |++++|++..+..+.
T Consensus        93 L~L~~N~I~~l~~l~  107 (175)
T PF14580_consen   93 LYLSNNKISDLNELE  107 (175)
T ss_dssp             EE-TTS---SCCCCG
T ss_pred             EECcCCcCCChHHhH
Confidence            999999988765543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.10  E-value=2e-06  Score=83.40  Aligned_cols=84  Identities=19%  Similarity=0.193  Sum_probs=39.1

Q ss_pred             CCCCEEEeeCCCCC-----cCCccccCCCCCCEEEecCCCCCC-----CCChhccCCCcCceeeeecccCC----ccCCc
Q 015983           56 DQLLEIHLEGTAIR-----GLPASIELLSGNVLLNLKDRKNLK-----SLPSTINGLRCLRMLHLSGCSKL----KNAPE  121 (397)
Q Consensus        56 ~~L~~L~Ls~~~i~-----~lP~si~~L~~L~~L~Ls~c~~l~-----~LP~~i~~L~sL~~L~Ls~C~~L----~~lP~  121 (397)
                      ++|+.|+|++|.++     .++..+..+.+|+.|++++| .+.     .++..+..+++|++|++++|..-    ..++.
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  215 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE  215 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence            45555555555555     22333444455555555553 333     12333333445555555554211    11223


Q ss_pred             ccCCCCCCcEEECCCCccc
Q 015983          122 TLGKVESLESAVETVTKFA  140 (397)
Q Consensus       122 ~~~~L~~L~~L~ls~n~~~  140 (397)
                      .+..+++|+.|++++|.++
T Consensus       216 ~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         216 TLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HhcccCCCCEEecCCCcCc
Confidence            3444555555555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.10  E-value=1.5e-06  Score=84.33  Aligned_cols=137  Identities=18%  Similarity=0.243  Sum_probs=82.9

Q ss_pred             CCCcEEeccCCCCCc-------cCCC---cceEEeecCCccc-----cchhhhhh-hccc--------------cccCcc
Q 015983            2 KSLKTLVLSGCLKLK-------KFPD---IVQVLWDGTDIRE-----LSFAIELL-FRLV--------------QEFPEK   51 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~-------~lP~---~~~L~Ls~n~l~~-----Lp~si~~L-~~L~--------------~~~P~~   51 (397)
                      ++|+.|+|++|..-.       .++.   +..|++++|.+..     +...+..+ .+|+              ..++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            467777777764321       1222   4557777766652     22233333 2222              123334


Q ss_pred             CCCCCCCCEEEeeCCCCC-----cCCccccCCCCCCEEEecCCCCCC-----CCChhccCCCcCceeeeecccCCcc---
Q 015983           52 TSSKDQLLEIHLEGTAIR-----GLPASIELLSGNVLLNLKDRKNLK-----SLPSTINGLRCLRMLHLSGCSKLKN---  118 (397)
Q Consensus        52 l~~l~~L~~L~Ls~~~i~-----~lP~si~~L~~L~~L~Ls~c~~l~-----~LP~~i~~L~sL~~L~Ls~C~~L~~---  118 (397)
                      +..+++|++|+|++|.++     .++..+..+++|+.|+|++| .+.     .++..+..+++|++|++++|. +..   
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~  238 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGA  238 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHH
Confidence            456678999999999887     34445566678999999985 443     244556677889999999864 332   


Q ss_pred             --CCcc-cCCCCCCcEEECCCCccc
Q 015983          119 --APET-LGKVESLESAVETVTKFA  140 (397)
Q Consensus       119 --lP~~-~~~L~~L~~L~ls~n~~~  140 (397)
                        +... ....+.|+.|++++|.++
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCC
Confidence              1111 112467889999988875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.04  E-value=1.3e-06  Score=83.35  Aligned_cols=88  Identities=20%  Similarity=0.272  Sum_probs=67.5

Q ss_pred             CCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcE
Q 015983           52 TSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLES  131 (397)
Q Consensus        52 l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~  131 (397)
                      +..+..|++|||++|.|+++..++.-+++++.|++++ |.+..+-. +..|++|+.|||++ +.+..+-.+-..|.+.+.
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNIKT  356 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccc-cceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCEee
Confidence            3446779999999999999999999999999999998 67777755 77889999999999 566665554444555566


Q ss_pred             EECCCCccccc
Q 015983          132 AVETVTKFAKA  142 (397)
Q Consensus       132 L~ls~n~~~~L  142 (397)
                      |.+++|.+..|
T Consensus       357 L~La~N~iE~L  367 (490)
T KOG1259|consen  357 LKLAQNKIETL  367 (490)
T ss_pred             eehhhhhHhhh
Confidence            66666655443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.03  E-value=3.6e-07  Score=89.87  Aligned_cols=104  Identities=19%  Similarity=0.248  Sum_probs=69.5

Q ss_pred             EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCCCh-hccC
Q 015983           24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSLPS-TING  101 (397)
Q Consensus        24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~  101 (397)
                      ++|+.|.|+.||+..             ++.+++|++|||+.|+|+.+ |..|..|.+|..|-+.++|+++.+|. .+++
T Consensus        72 irLdqN~I~~iP~~a-------------F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g  138 (498)
T KOG4237|consen   72 IRLDQNQISSIPPGA-------------FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG  138 (498)
T ss_pred             EEeccCCcccCChhh-------------ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence            777777777777643             35667777788887777766 45577777777777766677777776 5677


Q ss_pred             CCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCcccc
Q 015983          102 LRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus       102 L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~~  141 (397)
                      |.+|+.|.+.-| .+..++ +.+..|++|..|.+..|.+..
T Consensus       139 L~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~  178 (498)
T KOG4237|consen  139 LSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQS  178 (498)
T ss_pred             HHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhh
Confidence            777777766653 333333 445666666666666665543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.99  E-value=1.8e-06  Score=85.09  Aligned_cols=66  Identities=17%  Similarity=0.214  Sum_probs=54.4

Q ss_pred             ccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCccccc
Q 015983           75 IELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAKA  142 (397)
Q Consensus        75 i~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L  142 (397)
                      |+.|++|+.|+|++ |.++.+ +..+.++.+|+.|.|.. ++++.+.. .+..+..|++|++.+|+++.+
T Consensus       270 f~~L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~  337 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTV  337 (498)
T ss_pred             HhhcccceEeccCC-CccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEE
Confidence            57899999999998 788887 56888999999999998 57777653 577888899999999987753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=1.1e-06  Score=87.49  Aligned_cols=88  Identities=20%  Similarity=0.180  Sum_probs=45.2

Q ss_pred             CCCCCCEEEeeCC-CCCcCCccccCCCCCCEEEecCCCCCCCCC--hhccCCCcCceeeeecccCCccC--Ccc-----c
Q 015983           54 SKDQLLEIHLEGT-AIRGLPASIELLSGNVLLNLKDRKNLKSLP--STINGLRCLRMLHLSGCSKLKNA--PET-----L  123 (397)
Q Consensus        54 ~l~~L~~L~Ls~~-~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP--~~i~~L~sL~~L~Ls~C~~L~~l--P~~-----~  123 (397)
                      .+++|+.|+|.+| .+..--.+...+..|+.|+|++ |++...+  ...+.++.|..|+++.| .+.++  |+.     .
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~-N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt  297 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN-NNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKT  297 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccC-Ccccccccccccccccchhhhhcccc-CcchhcCCCccchhhh
Confidence            3445555666555 2221112233445666666666 4455554  23556666666666663 34333  221     2


Q ss_pred             CCCCCCcEEECCCCcccccc
Q 015983          124 GKVESLESAVETVTKFAKAE  143 (397)
Q Consensus       124 ~~L~~L~~L~ls~n~~~~L~  143 (397)
                      ..+++|++|++..|++.+.+
T Consensus       298 ~~f~kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  298 HTFPKLEYLNISENNIRDWR  317 (505)
T ss_pred             cccccceeeecccCcccccc
Confidence            34566667777666665433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.96  E-value=5e-06  Score=91.79  Aligned_cols=86  Identities=28%  Similarity=0.340  Sum_probs=77.2

Q ss_pred             CCCCCCCCEEEeeCC-CCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCc
Q 015983           52 TSSKDQLLEIHLEGT-AIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLE  130 (397)
Q Consensus        52 l~~l~~L~~L~Ls~~-~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~  130 (397)
                      +..|+.|+.|||++| .+.++|.+|+.|-+|++|+|++ ..+..+|..+++|..|.+|++..+..+..+|.....|.+|+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            567999999999987 7889999999999999999998 78999999999999999999999888888888777799999


Q ss_pred             EEECCCCc
Q 015983          131 SAVETVTK  138 (397)
Q Consensus       131 ~L~ls~n~  138 (397)
                      +|.+....
T Consensus       646 ~L~l~~s~  653 (889)
T KOG4658|consen  646 VLRLPRSA  653 (889)
T ss_pred             EEEeeccc
Confidence            98875543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.93  E-value=9.3e-06  Score=59.68  Aligned_cols=59  Identities=20%  Similarity=0.359  Sum_probs=51.0

Q ss_pred             CCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCcc
Q 015983           79 SGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKF  139 (397)
Q Consensus        79 ~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~  139 (397)
                      ++|+.|++++ +.+..+|. .+.++++|++|++++ +.++.+| ..+..+++|+.|++++|++
T Consensus         1 p~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSN-NKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETS-STESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCC-CCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999 58999985 788999999999998 5677775 5789999999999999964

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.83  E-value=1.9e-05  Score=54.38  Aligned_cols=41  Identities=24%  Similarity=0.405  Sum_probs=31.6

Q ss_pred             CCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCCh
Q 015983           56 DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPS   97 (397)
Q Consensus        56 ~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~   97 (397)
                      ++|++|+|++|.|+.+|..+++|++|+.|++++ +.+..+|.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSN-NPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETS-SCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecC-CCCCCCcC
Confidence            468888888888888888888888888888888 46776654

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=3.1e-05  Score=77.37  Aligned_cols=136  Identities=20%  Similarity=0.264  Sum_probs=85.0

Q ss_pred             CCCCcEEeccCCCCCcc---------CCCcceEEeecCCccc--cc---hhhhhhhccc---------cccCccCCCCCC
Q 015983            1 MKSLKTLVLSGCLKLKK---------FPDIVQVLWDGTDIRE--LS---FAIELLFRLV---------QEFPEKTSSKDQ   57 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~---------lP~~~~L~Ls~n~l~~--Lp---~si~~L~~L~---------~~~P~~l~~l~~   57 (397)
                      |++|+.|+|+.|. +..         ++.+..|.|++|.++.  +-   ..+.++..|.         ...+.  ..+..
T Consensus       171 Lp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~  247 (505)
T KOG3207|consen  171 LPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQT  247 (505)
T ss_pred             cccchhccccccc-ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhH
Confidence            5778888888763 322         2223337777776652  11   1111222221         11111  23567


Q ss_pred             CCEEEeeCCCCCcCC--ccccCCCCCCEEEecCCCCCCCC--Chh-----ccCCCcCceeeeecccCCccCCc--ccCCC
Q 015983           58 LLEIHLEGTAIRGLP--ASIELLSGNVLLNLKDRKNLKSL--PST-----INGLRCLRMLHLSGCSKLKNAPE--TLGKV  126 (397)
Q Consensus        58 L~~L~Ls~~~i~~lP--~si~~L~~L~~L~Ls~c~~l~~L--P~~-----i~~L~sL~~L~Ls~C~~L~~lP~--~~~~L  126 (397)
                      |++|+|++|++...+  .-++.|+.|..|+++. +.+.++  |+.     ...+++|++|+++.| ++...+.  .+..+
T Consensus       248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l  325 (505)
T KOG3207|consen  248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTL  325 (505)
T ss_pred             HhhccccCCcccccccccccccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhcc
Confidence            999999999998887  4588999999999998 466664  443     346789999999995 5544443  24456


Q ss_pred             CCCcEEECCCCcccc
Q 015983          127 ESLESAVETVTKFAK  141 (397)
Q Consensus       127 ~~L~~L~ls~n~~~~  141 (397)
                      ++|+.|.+..|.+..
T Consensus       326 ~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  326 ENLKHLRITLNYLNK  340 (505)
T ss_pred             chhhhhhcccccccc
Confidence            667777777776653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.44  E-value=1.4e-05  Score=68.49  Aligned_cols=107  Identities=17%  Similarity=0.284  Sum_probs=73.4

Q ss_pred             EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccC-CCCCCEEEecCCCCCCCCChhccCC
Q 015983           24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIEL-LSGNVLLNLKDRKNLKSLPSTINGL  102 (397)
Q Consensus        24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~-L~~L~~L~Ls~c~~l~~LP~~i~~L  102 (397)
                      ++|+++.+-.++.....+.           ....|+..+|++|.++.+|..+.. .+.++.|+|++ |.+..+|..+..+
T Consensus        32 ldLssc~lm~i~davy~l~-----------~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam   99 (177)
T KOG4579|consen   32 LDLSSCQLMYIADAVYMLS-----------KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAM   99 (177)
T ss_pred             cccccchhhHHHHHHHHHh-----------CCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhh
Confidence            5566666665655544332           234567778888888888877653 34778888887 6788888878888


Q ss_pred             CcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983          103 RCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus       103 ~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      +.|+.|+++. +.+...|..+..|.+|..|+..+|....++
T Consensus       100 ~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  100 PALRSLNLRF-NPLNAEPRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             HHhhhccccc-CccccchHHHHHHHhHHHhcCCCCccccCc
Confidence            8888888887 466666766666777777777777655443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.42  E-value=0.00021  Score=72.21  Aligned_cols=79  Identities=19%  Similarity=0.298  Sum_probs=62.3

Q ss_pred             CCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEE
Q 015983           54 SKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAV  133 (397)
Q Consensus        54 ~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~  133 (397)
                      .+.++..|++++|.|+.+|.   ...+|+.|.+++|+++..+|..+  ..+|++|++++|..+..+|..      |+.|+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~  118 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence            35789999999999999982   34579999999999999999865  478999999999888888753      55666


Q ss_pred             CCCCcccccc
Q 015983          134 ETVTKFAKAE  143 (397)
Q Consensus       134 ls~n~~~~L~  143 (397)
                      +.++.+..++
T Consensus       119 L~~n~~~~L~  128 (426)
T PRK15386        119 IKGSATDSIK  128 (426)
T ss_pred             eCCCCCcccc
Confidence            6666544433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.41  E-value=8.6e-06  Score=85.68  Aligned_cols=84  Identities=17%  Similarity=0.210  Sum_probs=55.4

Q ss_pred             CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChh-ccCCCcCceeeeecccCCccCCcccCCCCCCcE
Q 015983           53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPST-INGLRCLRMLHLSGCSKLKNAPETLGKVESLES  131 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~-i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~  131 (397)
                      .-++.|+.|+|+.|.++.+. .+..|.+|+.|||++ |.+..+|.. ..+. .|..|++++ |.++++-. +.+|++|+.
T Consensus       184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lrn-N~l~tL~g-ie~LksL~~  258 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLRN-NALTTLRG-IENLKSLYG  258 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhh-hheeeeecc-cHHHhhhh-HHhhhhhhc
Confidence            34456777788887777665 667777788888877 677777752 2222 377777777 46666633 456777777


Q ss_pred             EECCCCcccc
Q 015983          132 AVETVTKFAK  141 (397)
Q Consensus       132 L~ls~n~~~~  141 (397)
                      |+++.|-+..
T Consensus       259 LDlsyNll~~  268 (1096)
T KOG1859|consen  259 LDLSYNLLSE  268 (1096)
T ss_pred             cchhHhhhhc
Confidence            7777775543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.40  E-value=0.0001  Score=79.56  Aligned_cols=124  Identities=21%  Similarity=0.297  Sum_probs=84.9

Q ss_pred             CCcEEeccCCCCC---------ccCCCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc
Q 015983            3 SLKTLVLSGCLKL---------KKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA   73 (397)
Q Consensus         3 sL~~L~LsgC~~L---------~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~   73 (397)
                      +|+.|+++|-..+         ..+|.+..|.+.+-.+..            ..|-....++++|..||+++++|+.+ .
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~------------~dF~~lc~sFpNL~sLDIS~TnI~nl-~  189 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN------------DDFSQLCASFPNLRSLDISGTNISNL-S  189 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc------------hhHHHHhhccCccceeecCCCCccCc-H
Confidence            6888888885433         135555555555533321            11122235778999999999999988 7


Q ss_pred             cccCCCCCCEEEecCCCCCCCCCh--hccCCCcCceeeeecccCCccCC-------cccCCCCCCcEEECCCCcccc
Q 015983           74 SIELLSGNVLLNLKDRKNLKSLPS--TINGLRCLRMLHLSGCSKLKNAP-------ETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus        74 si~~L~~L~~L~Ls~c~~l~~LP~--~i~~L~sL~~L~Ls~C~~L~~lP-------~~~~~L~~L~~L~ls~n~~~~  141 (397)
                      ++++|++|+.|.+.+ -.+..-..  .+.+|++|+.||+|.- +....+       +.-..|+.|+.||.+++.+..
T Consensus       190 GIS~LknLq~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~-~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  190 GISRLKNLQVLSMRN-LEFESYQDLIDLFNLKKLRVLDISRD-KNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHhccccHHHHhccC-CCCCchhhHHHHhcccCCCeeecccc-ccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            899999999999987 34444332  4668999999999973 332222       223458899999999987653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.39  E-value=0.00017  Score=49.67  Aligned_cols=32  Identities=28%  Similarity=0.449  Sum_probs=15.1

Q ss_pred             CCCEEEecCCCCCCCCChhccCCCcCceeeeec
Q 015983           80 GNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSG  112 (397)
Q Consensus        80 ~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~  112 (397)
                      +|+.|++++ +.+..+|..+++|++|+.|++++
T Consensus         2 ~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~   33 (44)
T PF12799_consen    2 NLEELDLSN-NQITDLPPELSNLPNLETLNLSN   33 (44)
T ss_dssp             T-SEEEETS-SS-SSHGGHGTTCTTSSEEEETS
T ss_pred             cceEEEccC-CCCcccCchHhCCCCCCEEEecC
Confidence            445555555 34555554445555555555554

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.36  E-value=1.3e-05  Score=68.75  Aligned_cols=102  Identities=20%  Similarity=0.237  Sum_probs=81.2

Q ss_pred             CcEEeccCCCCCccCCCc----------ceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc
Q 015983            4 LKTLVLSGCLKLKKFPDI----------VQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA   73 (397)
Q Consensus         4 L~~L~LsgC~~L~~lP~~----------~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~   73 (397)
                      +..|+|+.|. +..+++.          ...+|++|.++.+|..+.             ...+.++.|+|++|.|+++|.
T Consensus        29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft-------------~kf~t~t~lNl~~neisdvPe   94 (177)
T KOG4579|consen   29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFT-------------IKFPTATTLNLANNEISDVPE   94 (177)
T ss_pred             hhhcccccch-hhHHHHHHHHHhCCceEEEEecccchhhhCCHHHh-------------hccchhhhhhcchhhhhhchH
Confidence            4567888883 4444432          227899999999887763             344568899999999999999


Q ss_pred             cccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCc
Q 015983           74 SIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPE  121 (397)
Q Consensus        74 si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~  121 (397)
                      .+..++.|+.|+++. |.+...|.-|..|.+|.+|+..+ +....+|.
T Consensus        95 E~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~  140 (177)
T KOG4579|consen   95 ELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLDSPE-NARAEIDV  140 (177)
T ss_pred             HHhhhHHhhhccccc-CccccchHHHHHHHhHHHhcCCC-CccccCcH
Confidence            999999999999998 78999999888899999999887 55666664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.99  E-value=0.00022  Score=72.65  Aligned_cols=85  Identities=22%  Similarity=0.229  Sum_probs=43.6

Q ss_pred             CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcc-cCCCCCCcE
Q 015983           53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPET-LGKVESLES  131 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~-~~~L~~L~~  131 (397)
                      ..|.+|++|+|++|.|+.+. .+..+..|+.|++.+ |.+..++. +..+..|+.+++++| .+..+... ...+..|+.
T Consensus       115 ~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~~-~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~  190 (414)
T KOG0531|consen  115 SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG-NLISDISG-LESLKSLKLLDLSYN-RIVDIENDELSELISLEE  190 (414)
T ss_pred             hhhhcchheecccccccccc-chhhccchhhheecc-CcchhccC-CccchhhhcccCCcc-hhhhhhhhhhhhccchHH
Confidence            34555666666666665543 233444466666665 45555544 333555666666653 33333321 244455555


Q ss_pred             EECCCCcccc
Q 015983          132 AVETVTKFAK  141 (397)
Q Consensus       132 L~ls~n~~~~  141 (397)
                      +.+.+|.+..
T Consensus       191 l~l~~n~i~~  200 (414)
T KOG0531|consen  191 LDLGGNSIRE  200 (414)
T ss_pred             HhccCCchhc
Confidence            5555555444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.71  E-value=0.00085  Score=68.41  Aligned_cols=90  Identities=20%  Similarity=0.243  Sum_probs=76.2

Q ss_pred             cCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCc
Q 015983           51 KTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLE  130 (397)
Q Consensus        51 ~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~  130 (397)
                      .++.+++|+.|++.+|.|+.+...+..+.+|+.|+|++ |.+..+.. +..++.|+.|++++ +.+..+.. +..++.|+
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~-l~~l~~L~~L~l~~-N~i~~~~~-~~~l~~L~  165 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEG-LSTLTLLKELNLSG-NLISDISG-LESLKSLK  165 (414)
T ss_pred             ccccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccc-hhhccchhhheecc-CcchhccC-Cccchhhh
Confidence            35778899999999999999887788999999999999 78888865 66778899999999 57777754 35588899


Q ss_pred             EEECCCCccccccc
Q 015983          131 SAVETVTKFAKAEL  144 (397)
Q Consensus       131 ~L~ls~n~~~~L~~  144 (397)
                      .+++++|.+..++.
T Consensus       166 ~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  166 LLDLSYNRIVDIEN  179 (414)
T ss_pred             cccCCcchhhhhhh
Confidence            99999998887766

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.54  E-value=5.1e-05  Score=80.03  Aligned_cols=83  Identities=25%  Similarity=0.226  Sum_probs=55.2

Q ss_pred             CCCCCCCEEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCc--ccCCCCCC
Q 015983           53 SSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPE--TLGKVESL  129 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~--~~~~L~~L  129 (397)
                      ..++.|++|||++|.++.+|.- .... +|+.|+|++ |.+++|-. |.+|.+|+.||+++| .+....+  .+..|.+|
T Consensus       206 r~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn-N~l~tL~g-ie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L  281 (1096)
T KOG1859|consen  206 RRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN-NALTTLRG-IENLKSLYGLDLSYN-LLSEHSELEPLWSLSSL  281 (1096)
T ss_pred             Hhcccccccccccchhccccccchhhh-hheeeeecc-cHHHhhhh-HHhhhhhhccchhHh-hhhcchhhhHHHHHHHH
Confidence            3456788888888888877742 2222 388888887 67777754 777888888888884 3433322  23455667


Q ss_pred             cEEECCCCcc
Q 015983          130 ESAVETVTKF  139 (397)
Q Consensus       130 ~~L~ls~n~~  139 (397)
                      ..|.+.||++
T Consensus       282 ~~L~LeGNPl  291 (1096)
T KOG1859|consen  282 IVLWLEGNPL  291 (1096)
T ss_pred             HHHhhcCCcc
Confidence            7777777764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.20  E-value=0.0077  Score=55.02  Aligned_cols=96  Identities=19%  Similarity=0.223  Sum_probs=70.0

Q ss_pred             EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccC-CCCCCEEEecCCCCCCCCCh--hcc
Q 015983           24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIEL-LSGNVLLNLKDRKNLKSLPS--TIN  100 (397)
Q Consensus        24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~-L~~L~~L~Ls~c~~l~~LP~--~i~  100 (397)
                      ++|+.|.+..++.               +..++.|..|.|.+|+|+.+.+.+.. +++|+.|.|.+ |++..+-+  -+.
T Consensus        47 iDLtdNdl~~l~~---------------lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa  110 (233)
T KOG1644|consen   47 IDLTDNDLRKLDN---------------LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLA  110 (233)
T ss_pred             ecccccchhhccc---------------CCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhc
Confidence            7888888876542               35678899999999999998777654 56799999998 67777633  245


Q ss_pred             CCCcCceeeeecccCCccCCc----ccCCCCCCcEEECCC
Q 015983          101 GLRCLRMLHLSGCSKLKNAPE----TLGKVESLESAVETV  136 (397)
Q Consensus       101 ~L~sL~~L~Ls~C~~L~~lP~----~~~~L~~L~~L~ls~  136 (397)
                      .++.|++|.+-+| ....-+.    .+-.+++|+.||...
T Consensus       111 ~~p~L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  111 SCPKLEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCccceeeecCC-chhcccCceeEEEEecCcceEeehhh
Confidence            6788999988885 3332221    245677888888754

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.04  E-value=0.006  Score=66.18  Aligned_cols=96  Identities=24%  Similarity=0.281  Sum_probs=59.4

Q ss_pred             CCCCcEEeccCCCC--------CccCCCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCC
Q 015983            1 MKSLKTLVLSGCLK--------LKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLP   72 (397)
Q Consensus         1 L~sL~~L~LsgC~~--------L~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP   72 (397)
                      |++|+.|.++|=..        -..||++..||+|+++++.+ ..|++|              ++|+.|.+.+=.++.-.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~L--------------knLq~L~mrnLe~e~~~  211 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRL--------------KNLQVLSMRNLEFESYQ  211 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcc--------------ccHHHHhccCCCCCchh
Confidence            68999999998321        24799999999999999988 555444              45555555444443322


Q ss_pred             --ccccCCCCCCEEEecCCCCCCCCCh-------hccCCCcCceeeeec
Q 015983           73 --ASIELLSGNVLLNLKDRKNLKSLPS-------TINGLRCLRMLHLSG  112 (397)
Q Consensus        73 --~si~~L~~L~~L~Ls~c~~l~~LP~-------~i~~L~sL~~L~Ls~  112 (397)
                        ..+.+|++|+.||+|. ......+.       .-..|++|+.||.|+
T Consensus       212 ~l~~LF~L~~L~vLDIS~-~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  212 DLIDLFNLKKLRVLDISR-DKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             hHHHHhcccCCCeeeccc-cccccchHHHHHHHHhcccCccccEEecCC
Confidence              1345666777777765 22222221       112466777777666

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.57  E-value=0.0023  Score=62.69  Aligned_cols=85  Identities=12%  Similarity=0.048  Sum_probs=44.1

Q ss_pred             CCCCCEEEeeCCCCCcCCc-----cccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeecccCCc----cCC
Q 015983           55 KDQLLEIHLEGTAIRGLPA-----SIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCSKLK----NAP  120 (397)
Q Consensus        55 l~~L~~L~Ls~~~i~~lP~-----si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~~L~----~lP  120 (397)
                      -+.|+.+....|++..-+.     .++..+.|+.+.+.. |.+..     +-..+..+++|+.|||.+|..-.    .+.
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            3456666666666653332     245555666666665 33321     22334556666666666643211    122


Q ss_pred             cccCCCCCCcEEECCCCccc
Q 015983          121 ETLGKVESLESAVETVTKFA  140 (397)
Q Consensus       121 ~~~~~L~~L~~L~ls~n~~~  140 (397)
                      +.+..+++|+.|+++.|.++
T Consensus       235 kaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHhcccchheeecccccccc
Confidence            33445556666666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.48  E-value=0.021  Score=52.25  Aligned_cols=85  Identities=19%  Similarity=0.231  Sum_probs=65.1

Q ss_pred             CCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhc-cCCCcCceeeeecccCCccCCc--ccCCCCCCcEE
Q 015983           56 DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTI-NGLRCLRMLHLSGCSKLKNAPE--TLGKVESLESA  132 (397)
Q Consensus        56 ~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i-~~L~sL~~L~Ls~C~~L~~lP~--~~~~L~~L~~L  132 (397)
                      .+...+||++|.|..++ .+.++.+|.+|.|.+ |++..+-..+ .-+++|..|.|.+ +++..+-+  .+..++.|++|
T Consensus        42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhcc-cCCCccccceEEecC-CcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCcccee
Confidence            56788999999888665 366788999999998 7898884434 3457799999998 56666643  35678889999


Q ss_pred             ECCCCcccccc
Q 015983          133 VETVTKFAKAE  143 (397)
Q Consensus       133 ~ls~n~~~~L~  143 (397)
                      .+-+|+++..+
T Consensus       119 tll~Npv~~k~  129 (233)
T KOG1644|consen  119 TLLGNPVEHKK  129 (233)
T ss_pred             eecCCchhccc
Confidence            99999877644

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.25  E-value=0.0054  Score=35.54  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=13.0

Q ss_pred             CCCEEEeeCCCCCcCCccccC
Q 015983           57 QLLEIHLEGTAIRGLPASIEL   77 (397)
Q Consensus        57 ~L~~L~Ls~~~i~~lP~si~~   77 (397)
                      +|++|+|++|.|+.+|.+|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            356666666666666665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.19  E-value=0.013  Score=57.47  Aligned_cols=88  Identities=16%  Similarity=0.041  Sum_probs=60.4

Q ss_pred             CCCCCCCEEEeeCCCCCcC--------------CccccCCCCCCEEEecCCCCCCCCC-----hhccCCCcCceeeeecc
Q 015983           53 SSKDQLLEIHLEGTAIRGL--------------PASIELLSGNVLLNLKDRKNLKSLP-----STINGLRCLRMLHLSGC  113 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~l--------------P~si~~L~~L~~L~Ls~c~~l~~LP-----~~i~~L~sL~~L~Ls~C  113 (397)
                      .+..+|++|+|.+|.+...              ..-++.-.+|+.+.... |++..-+     ..+...+.|+.+.+..|
T Consensus       117 ~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN  195 (382)
T KOG1909|consen  117 SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQN  195 (382)
T ss_pred             HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHHhccccceEEEecc
Confidence            4466788888888877521              11245567899998887 6777654     33556678999999885


Q ss_pred             cCCc----cCCcccCCCCCCcEEECCCCcccc
Q 015983          114 SKLK----NAPETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus       114 ~~L~----~lP~~~~~L~~L~~L~ls~n~~~~  141 (397)
                      ..-.    -+-..+..++.|+.|++..|.|+.
T Consensus       196 ~I~~eG~~al~eal~~~~~LevLdl~DNtft~  227 (382)
T KOG1909|consen  196 GIRPEGVTALAEALEHCPHLEVLDLRDNTFTL  227 (382)
T ss_pred             cccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence            3221    123346788999999999998875

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.51  E-value=0.0064  Score=58.63  Aligned_cols=80  Identities=25%  Similarity=0.276  Sum_probs=49.4

Q ss_pred             CCCCEEEeeCCC--CC--cCCccccCCCCCCEEEecCCCCCCC-CChhccCCCcCceeeeecccCCccCCc---ccCCCC
Q 015983           56 DQLLEIHLEGTA--IR--GLPASIELLSGNVLLNLKDRKNLKS-LPSTINGLRCLRMLHLSGCSKLKNAPE---TLGKVE  127 (397)
Q Consensus        56 ~~L~~L~Ls~~~--i~--~lP~si~~L~~L~~L~Ls~c~~l~~-LP~~i~~L~sL~~L~Ls~C~~L~~lP~---~~~~L~  127 (397)
                      ++|+.|+|+|+.  +.  .+..-....++|..|||+.|..++. .-..+.+++.|++|.++.|..+  +|+   .+++.+
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~p  363 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKP  363 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCc
Confidence            356677777752  21  2222234667788888888766654 1223556778888888887543  232   356677


Q ss_pred             CCcEEECCCC
Q 015983          128 SLESAVETVT  137 (397)
Q Consensus       128 ~L~~L~ls~n  137 (397)
                      +|.+|++.++
T Consensus       364 sl~yLdv~g~  373 (419)
T KOG2120|consen  364 SLVYLDVFGC  373 (419)
T ss_pred             ceEEEEeccc
Confidence            7888887765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.27  E-value=0.062  Score=50.84  Aligned_cols=84  Identities=21%  Similarity=0.193  Sum_probs=43.6

Q ss_pred             CCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCC--CCCCCChhccCCCcCceeeeecccCCccCC--cccCCCCCCcE
Q 015983           56 DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRK--NLKSLPSTINGLRCLRMLHLSGCSKLKNAP--ETLGKVESLES  131 (397)
Q Consensus        56 ~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~--~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP--~~~~~L~~L~~  131 (397)
                      ..|+.|.+.+..++.+ ..+..|++|+.|.++.++  -...++-....+++|++|++++| +++.+-  ..+..+++|..
T Consensus        43 ~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhh
Confidence            3445555544433322 122346677777777631  12234444445577777777774 444321  12345566667


Q ss_pred             EECCCCcccc
Q 015983          132 AVETVTKFAK  141 (397)
Q Consensus       132 L~ls~n~~~~  141 (397)
                      |++.+|..++
T Consensus       121 Ldl~n~~~~~  130 (260)
T KOG2739|consen  121 LDLFNCSVTN  130 (260)
T ss_pred             hhcccCCccc
Confidence            7777665544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.10  E-value=0.0046  Score=59.05  Aligned_cols=79  Identities=20%  Similarity=0.180  Sum_probs=54.5

Q ss_pred             CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCCh--hccCCCcCceeeeecccCCccCCc-----ccCC
Q 015983           53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPS--TINGLRCLRMLHLSGCSKLKNAPE-----TLGK  125 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~--~i~~L~sL~~L~Ls~C~~L~~lP~-----~~~~  125 (397)
                      ..|+.|+.|.|+-|.|+.|- .+..+++|+.|.|.. |.+.++-+  -+.+|++|+.|+|..|.--+.-+.     .+.-
T Consensus        38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~  115 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV  115 (388)
T ss_pred             HhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence            57888888989888888774 366778888888887 67777654  356788888888887654433332     1234


Q ss_pred             CCCCcEEE
Q 015983          126 VESLESAV  133 (397)
Q Consensus       126 L~~L~~L~  133 (397)
                      |++|+.|+
T Consensus       116 LPnLkKLD  123 (388)
T KOG2123|consen  116 LPNLKKLD  123 (388)
T ss_pred             cccchhcc
Confidence            55566554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.91  E-value=0.066  Score=28.97  Aligned_cols=16  Identities=25%  Similarity=0.515  Sum_probs=7.2

Q ss_pred             CCCEEEeeCCCCCcCC
Q 015983           57 QLLEIHLEGTAIRGLP   72 (397)
Q Consensus        57 ~L~~L~Ls~~~i~~lP   72 (397)
                      +|+.|+|++|.++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666665554

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=92.82  E-value=0.021  Score=55.12  Aligned_cols=111  Identities=18%  Similarity=0.195  Sum_probs=69.0

Q ss_pred             CCCcEEeccCCCCCccCC---------CcceEEeecCCccc-----cchhh-hhhhccc-----cccCc-----cCCCCC
Q 015983            2 KSLKTLVLSGCLKLKKFP---------DIVQVLWDGTDIRE-----LSFAI-ELLFRLV-----QEFPE-----KTSSKD   56 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP---------~~~~L~Ls~n~l~~-----Lp~si-~~L~~L~-----~~~P~-----~l~~l~   56 (397)
                      ..|+.|||++|+.++++-         .+..|+|+.+.+.+     +-..| .++++|-     +.+-.     .....+
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp  313 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP  313 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence            368899999998765432         22226666654431     11122 1344432     11110     013467


Q ss_pred             CCCEEEeeCC-CCC-cCCccccCCCCCCEEEecCCCCCCCCChh---ccCCCcCceeeeeccc
Q 015983           57 QLLEIHLEGT-AIR-GLPASIELLSGNVLLNLKDRKNLKSLPST---INGLRCLRMLHLSGCS  114 (397)
Q Consensus        57 ~L~~L~Ls~~-~i~-~lP~si~~L~~L~~L~Ls~c~~l~~LP~~---i~~L~sL~~L~Ls~C~  114 (397)
                      +|.+|||++| .++ .+-..|..++.|++|.++.|..+  +|..   +...++|.+|++.||-
T Consensus       314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence            8999999987 555 33345678899999999999655  4443   4567899999999984

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.30  E-value=0.082  Score=28.59  Aligned_cols=17  Identities=41%  Similarity=0.530  Sum_probs=10.9

Q ss_pred             CCCcEEeccCCCCCccCC
Q 015983            2 KSLKTLVLSGCLKLKKFP   19 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP   19 (397)
                      ++|+.|+|++|. ++++|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            478999999985 77776

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.14  E-value=0.059  Score=31.09  Aligned_cols=17  Identities=41%  Similarity=0.665  Sum_probs=7.9

Q ss_pred             CceeeeecccCCccCCcc
Q 015983          105 LRMLHLSGCSKLKNAPET  122 (397)
Q Consensus       105 L~~L~Ls~C~~L~~lP~~  122 (397)
                      |++|+|++| .++.+|..
T Consensus         2 L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             ESEEEETSS-EESEEGTT
T ss_pred             ccEEECCCC-cCEeCChh
Confidence            445555554 44444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.50  E-value=0.046  Score=52.86  Aligned_cols=83  Identities=28%  Similarity=0.379  Sum_probs=53.7

Q ss_pred             CCCCCCEEEeeCCCCCc---CCccccCCCCCCEEEecCCCCCC----CCChhccCCCcCceeeeecccCC--ccCCcccC
Q 015983           54 SKDQLLEIHLEGTAIRG---LPASIELLSGNVLLNLKDRKNLK----SLPSTINGLRCLRMLHLSGCSKL--KNAPETLG  124 (397)
Q Consensus        54 ~l~~L~~L~Ls~~~i~~---lP~si~~L~~L~~L~Ls~c~~l~----~LP~~i~~L~sL~~L~Ls~C~~L--~~lP~~~~  124 (397)
                      ..+.+++|||.+|.|+.   +-.-+.+|+.|+.|+|+. |.+.    ++|   ..+.+|++|.|.| +.+  ..+-..+.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-N~L~s~I~~lp---~p~~nl~~lVLNg-T~L~w~~~~s~l~  143 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-NSLSSDIKSLP---LPLKNLRVLVLNG-TGLSWTQSTSSLD  143 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-CcCCCccccCc---ccccceEEEEEcC-CCCChhhhhhhhh
Confidence            34568888999998874   334467888899999985 5543    344   2356888888877 333  22333455


Q ss_pred             CCCCCcEEECCCCcccc
Q 015983          125 KVESLESAVETVTKFAK  141 (397)
Q Consensus       125 ~L~~L~~L~ls~n~~~~  141 (397)
                      .++.++.|+++.|++++
T Consensus       144 ~lP~vtelHmS~N~~rq  160 (418)
T KOG2982|consen  144 DLPKVTELHMSDNSLRQ  160 (418)
T ss_pred             cchhhhhhhhccchhhh
Confidence            66666777777775544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.40  E-value=0.016  Score=55.39  Aligned_cols=82  Identities=16%  Similarity=0.162  Sum_probs=65.9

Q ss_pred             CCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCc--ccCCCCCCcEE
Q 015983           55 KDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPE--TLGKVESLESA  132 (397)
Q Consensus        55 l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~--~~~~L~~L~~L  132 (397)
                      +.+.+.|+..||.|..+. -+..++.|+.|.|+- |++.+|-. +..++.|+.|.|.. +.+..+-+  .+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHH-HHHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhH
Confidence            567788999999988652 356788999999998 78888855 67789999999998 46666654  36789999999


Q ss_pred             ECCCCccc
Q 015983          133 VETVTKFA  140 (397)
Q Consensus       133 ~ls~n~~~  140 (397)
                      .+..|++.
T Consensus        94 WL~ENPCc  101 (388)
T KOG2123|consen   94 WLDENPCC  101 (388)
T ss_pred             hhccCCcc
Confidence            99988765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.74  E-value=0.24  Score=29.52  Aligned_cols=20  Identities=25%  Similarity=0.446  Sum_probs=13.6

Q ss_pred             CCCCCEEEeeCCCCCcCCcc
Q 015983           55 KDQLLEIHLEGTAIRGLPAS   74 (397)
Q Consensus        55 l~~L~~L~Ls~~~i~~lP~s   74 (397)
                      |++|+.|+|++|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777777654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.74  E-value=0.24  Score=29.52  Aligned_cols=20  Identities=25%  Similarity=0.446  Sum_probs=13.6

Q ss_pred             CCCCCEEEeeCCCCCcCCcc
Q 015983           55 KDQLLEIHLEGTAIRGLPAS   74 (397)
Q Consensus        55 l~~L~~L~Ls~~~i~~lP~s   74 (397)
                      |++|+.|+|++|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35677777777777777654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.13  E-value=0.13  Score=49.89  Aligned_cols=78  Identities=19%  Similarity=0.139  Sum_probs=44.7

Q ss_pred             EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccc-cCCCCCCEEEecCCCCCC--CCChhcc
Q 015983           24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASI-ELLSGNVLLNLKDRKNLK--SLPSTIN  100 (397)
Q Consensus        24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si-~~L~~L~~L~Ls~c~~l~--~LP~~i~  100 (397)
                      |+|.+|.|+....-.           .++.+|+.|+.|+|+.|.+...-.+. --+.+|+.|-|.| ..+.  ..-+.+.
T Consensus        76 lDL~~N~iSdWseI~-----------~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~  143 (418)
T KOG2982|consen   76 LDLTGNLISDWSEIG-----------AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLD  143 (418)
T ss_pred             hhcccchhccHHHHH-----------HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhhhhh
Confidence            788888776443211           22356777888888877665221111 2345777777766 3332  2334455


Q ss_pred             CCCcCceeeeecc
Q 015983          101 GLRCLRMLHLSGC  113 (397)
Q Consensus       101 ~L~sL~~L~Ls~C  113 (397)
                      .++.++.|.++.|
T Consensus       144 ~lP~vtelHmS~N  156 (418)
T KOG2982|consen  144 DLPKVTELHMSDN  156 (418)
T ss_pred             cchhhhhhhhccc
Confidence            6666677777763

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=89.04  E-value=0.28  Score=46.49  Aligned_cols=62  Identities=26%  Similarity=0.375  Sum_probs=46.9

Q ss_pred             CCCCCCEEEeeCC--CCC-cCCccccCCCCCCEEEecCCCCCCC---CChhccCCCcCceeeeecccCCc
Q 015983           54 SKDQLLEIHLEGT--AIR-GLPASIELLSGNVLLNLKDRKNLKS---LPSTINGLRCLRMLHLSGCSKLK  117 (397)
Q Consensus        54 ~l~~L~~L~Ls~~--~i~-~lP~si~~L~~L~~L~Ls~c~~l~~---LP~~i~~L~sL~~L~Ls~C~~L~  117 (397)
                      .|++|+.|.++.|  .+. .++.....+++|++|++++ |.++.   ++. ...+.+|..|++.+|....
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRP-LKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccch-hhhhcchhhhhcccCCccc
Confidence            5778999999999  555 6776667779999999999 56654   332 4567788899999885443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.24  E-value=0.015  Score=54.35  Aligned_cols=83  Identities=17%  Similarity=0.192  Sum_probs=54.0

Q ss_pred             CCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEEC
Q 015983           55 KDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVE  134 (397)
Q Consensus        55 l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~l  134 (397)
                      .+..+.||++.|.+..+-..++.++.|..|+++. +.+..+|..++.+..+..+++.. +.+...|...+.++.++.+++
T Consensus        41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             cceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhh
Confidence            3455666666666666666666666677777766 56666676666666666666655 466666766666666666666


Q ss_pred             CCCcc
Q 015983          135 TVTKF  139 (397)
Q Consensus       135 s~n~~  139 (397)
                      -+|.+
T Consensus       119 k~~~~  123 (326)
T KOG0473|consen  119 KKTEF  123 (326)
T ss_pred             ccCcc
Confidence            66654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=82.66  E-value=1  Score=26.72  Aligned_cols=19  Identities=32%  Similarity=0.530  Sum_probs=13.0

Q ss_pred             CCCCcEEeccCCCCCccCCC
Q 015983            1 MKSLKTLVLSGCLKLKKFPD   20 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP~   20 (397)
                      |++|+.|+|++| .++.+|.
T Consensus         1 L~~L~~L~L~~N-~l~~lp~   19 (26)
T smart00369        1 LPNLRELDLSNN-QLSSLPP   19 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCH
Confidence            567777777776 5666654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=82.66  E-value=1  Score=26.72  Aligned_cols=19  Identities=32%  Similarity=0.530  Sum_probs=13.0

Q ss_pred             CCCCcEEeccCCCCCccCCC
Q 015983            1 MKSLKTLVLSGCLKLKKFPD   20 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP~   20 (397)
                      |++|+.|+|++| .++.+|.
T Consensus         1 L~~L~~L~L~~N-~l~~lp~   19 (26)
T smart00370        1 LPNLRELDLSNN-QLSSLPP   19 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCH
Confidence            567777777776 5666654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.25  E-value=0.07  Score=49.98  Aligned_cols=76  Identities=12%  Similarity=0.077  Sum_probs=59.9

Q ss_pred             EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCC
Q 015983           24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLR  103 (397)
Q Consensus        24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~  103 (397)
                      ||++.|.+..+...+.              .++.|..|+++.|.|.-+|..++.+..+..+++.+ |++..+|.+++.++
T Consensus        47 ld~~s~r~vn~~~n~s--------------~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~  111 (326)
T KOG0473|consen   47 LDLSSNRLVNLGKNFS--------------ILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEP  111 (326)
T ss_pred             ehhhhhHHHhhccchH--------------HHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccC
Confidence            6777776665554443              33457788899999999999988888888888877 78889999999999


Q ss_pred             cCceeeeeccc
Q 015983          104 CLRMLHLSGCS  114 (397)
Q Consensus       104 sL~~L~Ls~C~  114 (397)
                      +++++++.++.
T Consensus       112 ~~k~~e~k~~~  122 (326)
T KOG0473|consen  112 HPKKNEQKKTE  122 (326)
T ss_pred             CcchhhhccCc
Confidence            99999888754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	397
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 2/131 (1%)

Query: 2   KSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFR--LVQEFPEKTSSKDQLL 59
             L+ L +  C +L + P+ +       + + L     L      ++  P   ++   L 
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209

Query: 60  EIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNA 119
            + +  + +  L  +I  L     L+L+    L++ P    G   L+ L L  CS L   
Sbjct: 210 SLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269

Query: 120 PETLGKVESLE 130
           P  + ++  LE
Sbjct: 270 PLDIHRLTQLE 280

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.7 bits (166), Expect = 9e-13
 Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 39/169 (23%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVQVLW---------------------------DGTDIRE 33
               + L   G   L+ + D++                                G  ++ 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 34  LSFAIELLFRL-----------VQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNV 82
            +  +E   +            + +FP++      L  + ++   +  LP +++  +G  
Sbjct: 71  TADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLE 130

Query: 83  LLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLES 131
            L L     L++LP++I  L  LR L +  C +L   PE L   ++   
Sbjct: 131 TLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 32/147 (21%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIV------QVLW-DGTDIRELSFAIELLFRLVQEFPEKTS 53
                 L L     L +FPD        Q +  D   + EL   ++    L         
Sbjct: 80  QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLE-------- 130

Query: 54  SKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTI---------NGLRC 104
                  + L    +R LPASI  L+    L+++    L  LP  +          GL  
Sbjct: 131 ------TLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 105 LRMLHLSGCSKLKNAPETLGKVESLES 131
           L+ L L   + +++ P ++  +++L+S
Sbjct: 185 LQSLRLE-WTGIRSLPASIANLQNLKS 210

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 20/141 (14%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIV------QVLW-DGTDIRELSFAIELLFRLV-------- 45
           + +L++L L     ++  P  +      + L    + +  L  AI  L +L         
Sbjct: 182 LVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240

Query: 46  --QEFPEKTSSKDQLLEIHLEG-TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGL 102
             + +P     +  L  + L+  + +  LP  I  L+    L+L+   NL  LPS I  L
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300

Query: 103 RCLRMLHLSGCSKLKNAPETL 123
               ++ +          +  
Sbjct: 301 PANCIILVPPHL-QAQLDQHR 320

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 3e-11
 Identities = 56/325 (17%), Positives = 98/325 (30%), Gaps = 104/325 (32%)

Query: 2   KSLKTLVLSGCLKLK---KFPDIVQVLW--------DGTDIRELSFAIELLFRLVQEFPE 50
           K+   + L  CL  K   K     ++ W          T +  L    +LL+++   +  
Sbjct: 163 KT--WVALDVCLSYKVQCKMDF--KIFWLNLKNCNSPETVLEMLQ---KLLYQIDPNWTS 215

Query: 51  KTSSKDQL-LEIHLEGTAIRGL----PASIELLSGNVLLNLKDRKNLKSLPSTINGLRCL 105
           ++     + L IH     +R L    P    LL   VLLN+++ K   +       L C 
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---VLLNVQNAKAWNAF-----NLSC- 266

Query: 106 RMLHLSGCSKLKNA-PETLGKVESLESAVETVTK------FAKA---------------- 142
           ++L  +   ++ +          SL+    T+T         K                 
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 143 ----ELIAQKDSDS------WKK-NVDK---GIKLSTTA-------DYLRDFSIVVPGSE 181
                +IA+   D       WK  N DK    I+ S                S+  P + 
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 182 IPE------WFEYQNNEGSSITISTPPKTYKNSKLLGYAMCCVFHVPKYSLPYYIRPLPY 235
           IP       WF+   ++   +           +KL  Y++     V K      I     
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVV----------NKLHKYSL-----VEKQPKESTIS---- 427

Query: 236 PVHGLSINRKPTTPALGGIYLRKQF 260
            +  + +  K          L +  
Sbjct: 428 -IPSIYLELKVKLENE--YALHRSI 449

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 57  QLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKL 116
           +L  I+   +       +++        N    K  ++   + + L+ L  + L  C  +
Sbjct: 449 KLQIIYFANSPFTYDNIAVDWE----DANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 117 KNAPETLGKVESLES 131
              P+ L  +  L+S
Sbjct: 505 TQLPDFLYDLPELQS 519

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 13/137 (9%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLE 60
           +  LK L             +      G +      + E   R+   + +     DQ L 
Sbjct: 346 LTELKVLSFGTH-SETVSGRLF-----GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

Query: 61  I-HLEGTAIRGLPASIELLSGNVL----LNLKDRKN-LKSLPSTINGLRCLRMLHLSGCS 114
           +  L   AI   P    +   + +      + +  N +  +   I  L  L++++ +   
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS- 458

Query: 115 KLKNAPETLGKVESLES 131
                   +   ++   
Sbjct: 459 PFTYDNIAVDWEDANSD 475

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 10/94 (10%), Positives = 28/94 (29%), Gaps = 19/94 (20%)

Query: 57  QLLEIHLEGTAIRGLPASI-------EL-LSGN-----------VLLNLKDRKNLKSLPS 97
           +  +I      I  +  ++       +  +  +              N +  +  K+   
Sbjct: 184 KDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243

Query: 98  TINGLRCLRMLHLSGCSKLKNAPETLGKVESLES 131
             + L+ L  + +  C  L   P  L  +  ++ 
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 23/127 (18%), Positives = 38/127 (29%), Gaps = 21/127 (16%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIV---QVLW-DGTDIRELSFAIELLFRLV------QEFPE 50
             SLK L +    +L   P++    + +  D   +  L      L  L          PE
Sbjct: 119 PASLKHLDVDNN-QLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE 177

Query: 51  KTSSKDQLLEIHLEGTAIRGLPASIE----LLSGNVLLNLKDRKN-LKSLPSTINGLRCL 105
              S   L  + +    +  LPA            +      R+N +  +P  I  L   
Sbjct: 178 LPES---LEALDVSTNLLESLPAVPVRNHHSEETEIFFRC--RENRITHIPENILSLDPT 232

Query: 106 RMLHLSG 112
             + L  
Sbjct: 233 CTIILED 239

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 23/129 (17%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLE 60
             SL+ L +S   KL + P +   L        L  +   L     E PE   +   L +
Sbjct: 316 PPSLEELNVSNN-KLIELPALPPRL------ERLIASFNHL----AEVPELPQN---LKQ 361

Query: 61  IHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAP 120
           +H+E   +R  P   E +      +L+   +L  +P        L+ LH+     L+  P
Sbjct: 362 LHVEYNPLREFPDIPESVE-----DLRMNSHLAEVPELPQN---LKQLHVETN-PLREFP 412

Query: 121 ETLGKVESL 129
           +    VE L
Sbjct: 413 DIPESVEDL 421

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	397
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.69
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.6
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.44
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.44
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.43
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.43
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.43
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.41
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.4
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.4
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.39
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.39
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.39
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.38
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.38
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.38
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.38
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.38
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.36
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.36
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.35
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.33
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.33
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.33
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.33
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.33
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.32
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.3
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.3
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.3
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.3
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.3
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.3
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.3
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.3
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.3
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.3
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.28
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.28
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.27
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.27
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.27
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.25
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.24
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.24
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.23
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.23
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.21
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.21
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.2
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.2
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.2
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.2
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.2
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.16
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.1
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.1
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.1
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.1
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.05
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.01
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.0
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.99
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.98
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.97
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.9
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.89
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.86
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.86
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.76
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.56
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.56
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.5
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.44
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.43
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.29
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.23
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.21
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.04
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.82
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.81
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.58
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.58
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.52
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.25
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.19
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.19
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.17
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.15
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.7
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.67
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.2
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.85
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.96
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.34
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	91.26
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	90.25
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	87.78
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	85.78
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	84.28

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.69  E-value=3.4e-16  Score=152.40  Aligned_cols=136  Identities=30%  Similarity=0.423  Sum_probs=84.6

Q ss_pred             CCCcEEeccCCCCCccCCCcc-------eEEeecCCccccchhhhhhhccc----------cccCccCCC---------C
Q 015983            2 KSLKTLVLSGCLKLKKFPDIV-------QVLWDGTDIRELSFAIELLFRLV----------QEFPEKTSS---------K   55 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP~~~-------~L~Ls~n~l~~Lp~si~~L~~L~----------~~~P~~l~~---------l   55 (397)
                      ++|++|+|++| .+..+|...       .|+|++|.++.+|..++.+++|+          +.+|..+..         +
T Consensus       104 ~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          104 SHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             TTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            45666666665 233444322       26666666666666666555554          344544432         6


Q ss_pred             CCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECC
Q 015983           56 DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVET  135 (397)
Q Consensus        56 ~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls  135 (397)
                      ++|++|+|++|.++.+|..++.+++|+.|+|++ +.+..+|..+..+++|++|++++|+..+.+|..++.+++|+.|+++
T Consensus       183 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~  261 (328)
T 4fcg_A          183 VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK  261 (328)
T ss_dssp             TTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred             CCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence            666667776666666666666666777777766 4566666666666677777777666666666666666667777766


Q ss_pred             CCcc
Q 015983          136 VTKF  139 (397)
Q Consensus       136 ~n~~  139 (397)
                      +|++
T Consensus       262 ~n~~  265 (328)
T 4fcg_A          262 DCSN  265 (328)
T ss_dssp             TCTT
T ss_pred             CCCc
Confidence            6654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.60  E-value=3.7e-15  Score=145.02  Aligned_cols=140  Identities=21%  Similarity=0.297  Sum_probs=119.4

Q ss_pred             CCCCcEEeccCCCCCccCCCc-------ceEEeecCC-ccccchhhhh---------hhccc---------cccCccCCC
Q 015983            1 MKSLKTLVLSGCLKLKKFPDI-------VQVLWDGTD-IRELSFAIEL---------LFRLV---------QEFPEKTSS   54 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP~~-------~~L~Ls~n~-l~~Lp~si~~---------L~~L~---------~~~P~~l~~   54 (397)
                      |++|++|+|++| .+..+|..       ..|+|++|. +..+|..+..         +++|+         ..+|..++.
T Consensus       126 l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~  204 (328)
T 4fcg_A          126 FAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN  204 (328)
T ss_dssp             GTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGG
T ss_pred             cCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcC
Confidence            468999999998 45566643       338999854 4577876543         55554         578888899


Q ss_pred             CCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEEC
Q 015983           55 KDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVE  134 (397)
Q Consensus        55 l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~l  134 (397)
                      +++|++|+|++|.++.+|..++.+++|+.|+|++|+....+|..++.+++|++|+|++|+.++.+|..++.+++|+.|++
T Consensus       205 l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L  284 (328)
T 4fcg_A          205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL  284 (328)
T ss_dssp             CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred             CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence            99999999999999999999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             CCCcccc
Q 015983          135 TVTKFAK  141 (397)
Q Consensus       135 s~n~~~~  141 (397)
                      ++|++..
T Consensus       285 ~~n~~~~  291 (328)
T 4fcg_A          285 RGCVNLS  291 (328)
T ss_dssp             TTCTTCC
T ss_pred             CCCCchh
Confidence            9987643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.44  E-value=7.7e-13  Score=126.47  Aligned_cols=139  Identities=23%  Similarity=0.269  Sum_probs=110.0

Q ss_pred             CCCcEEeccCCCC-------CccCCCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983            2 KSLKTLVLSGCLK-------LKKFPDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG   65 (397)
Q Consensus         2 ~sL~~L~LsgC~~-------L~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~   65 (397)
                      ++|+.|+|++|..       +..++.+..|+|++|.|+.++.. ..+++|+         ..+|..+..+++|++|+|++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~  109 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF  109 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence            4688899998842       22344455588999888887754 4444444         56777788899999999999


Q ss_pred             CCCCcCCc-cccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCccccc
Q 015983           66 TAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAKA  142 (397)
Q Consensus        66 ~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L  142 (397)
                      |.|+.+|. .+..+++|+.|+|++ +.+..+|. .+..+++|+.|+|++ +.+..+|. .+..+++|+.|++++|.++.+
T Consensus       110 N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i  187 (290)
T 1p9a_G          110 NRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQENSLYTI  187 (290)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCCCcCCcc
Confidence            99999884 589999999999999 67888876 467899999999999 47788876 457899999999999988765


Q ss_pred             c
Q 015983          143 E  143 (397)
Q Consensus       143 ~  143 (397)
                      +
T Consensus       188 p  188 (290)
T 1p9a_G          188 P  188 (290)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.44  E-value=1.1e-12  Score=120.35  Aligned_cols=123  Identities=18%  Similarity=0.223  Sum_probs=77.6

Q ss_pred             cEEeccCCCCCccCCCcce-----EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc-cccCC
Q 015983            5 KTLVLSGCLKLKKFPDIVQ-----VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA-SIELL   78 (397)
Q Consensus         5 ~~L~LsgC~~L~~lP~~~~-----L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~-si~~L   78 (397)
                      +.|+++++ .++.+|....     |+|++|.|+.++..            ..+..+++|++|+|++|.|+.++. .+..+
T Consensus        14 ~~l~~s~n-~l~~iP~~~~~~~~~L~L~~N~l~~~~~~------------~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l   80 (220)
T 2v70_A           14 TTVDCSNQ-KLNKIPEHIPQYTAELRLNNNEFTVLEAT------------GIFKKLPQLRKINFSNNKITDIEEGAFEGA   80 (220)
T ss_dssp             TEEECCSS-CCSSCCSCCCTTCSEEECCSSCCCEECCC------------CCGGGCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CEeEeCCC-CcccCccCCCCCCCEEEcCCCcCCccCch------------hhhccCCCCCEEECCCCcCCEECHHHhCCC
Confidence            57888886 6777875432     89999999887431            112445566666666666666654 46666


Q ss_pred             CCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccC-CcccCCCCCCcEEECCCCccccc
Q 015983           79 SGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNA-PETLGKVESLESAVETVTKFAKA  142 (397)
Q Consensus        79 ~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~~L~ls~n~~~~L  142 (397)
                      ++|+.|+|++ +.+..+|. .+.++++|++|+|++| .+..+ |..+..+++|+.|++++|.++.+
T Consensus        81 ~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  144 (220)
T 2v70_A           81 SGVNEILLTS-NRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTV  144 (220)
T ss_dssp             TTCCEEECCS-SCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred             CCCCEEECCC-CccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence            6666666666 45555543 4666666666666664 33333 55566666666666666665543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.43  E-value=1.8e-12  Score=120.75  Aligned_cols=138  Identities=22%  Similarity=0.261  Sum_probs=109.1

Q ss_pred             CCcEEeccCCCCCccCCCcc-----eEEeecCCccccch-hhhhhhccc----------cccCccCCCCCCCCEEEeeCC
Q 015983            3 SLKTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSF-AIELLFRLV----------QEFPEKTSSKDQLLEIHLEGT   66 (397)
Q Consensus         3 sL~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~~   66 (397)
                      +.+.++++++ .++.+|...     .|+|++|.++.++. .+..+++|+          ...|..+..+++|++|+|++|
T Consensus        15 ~~~~l~~~~~-~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           15 GKKEVDCQGK-SLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GGTEEECTTC-CCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCeEEecCCC-CccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            4567888886 677777533     38888888887765 456666655          334455788999999999999


Q ss_pred             CCCcCCc-cccCCCCCCEEEecCCCCCCCCChh-ccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcccccc
Q 015983           67 AIRGLPA-SIELLSGNVLLNLKDRKNLKSLPST-INGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        67 ~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~~-i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      .|+.+|. .+..+++|+.|+|++ +.+..+|.. +..+++|++|+|++| .+..+|. .++.+++|+.|++++|.++.++
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            9998885 478999999999999 688888764 688999999999995 7777775 6888999999999999887654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.43  E-value=1.4e-12  Score=123.41  Aligned_cols=138  Identities=21%  Similarity=0.331  Sum_probs=100.1

Q ss_pred             CCCcEEeccCCCCCcc--------CCCcceEEeecCCcccc-chhhhhhhccc----------ccc-CccCCCCCCCCEE
Q 015983            2 KSLKTLVLSGCLKLKK--------FPDIVQVLWDGTDIREL-SFAIELLFRLV----------QEF-PEKTSSKDQLLEI   61 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~--------lP~~~~L~Ls~n~l~~L-p~si~~L~~L~----------~~~-P~~l~~l~~L~~L   61 (397)
                      ++|+.|+|++|. ++.        ++.+..|+|++|.++.+ |..+..+++|+          ..+ |..+..+++|++|
T Consensus        32 ~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            468888888873 333        33444488888888877 55666666654          222 5567778888888


Q ss_pred             EeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCc
Q 015983           62 HLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTK  138 (397)
Q Consensus        62 ~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~  138 (397)
                      +|++|.++.+ |..+..+++|+.|++++ +.+..+|. .+..+++|++|++++| .+..+|. .+..+++|+.|++++|.
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc
Confidence            8888888876 45578888888888888 56777764 4778888888888884 5666664 47778888888888887


Q ss_pred             cccc
Q 015983          139 FAKA  142 (397)
Q Consensus       139 ~~~L  142 (397)
                      ++.+
T Consensus       189 l~~~  192 (285)
T 1ozn_A          189 VAHV  192 (285)
T ss_dssp             CCEE
T ss_pred             cccc
Confidence            7653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.43  E-value=4.3e-13  Score=120.51  Aligned_cols=129  Identities=15%  Similarity=0.171  Sum_probs=89.1

Q ss_pred             CCCcEEeccCCCCCccCCC------cceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCc-CCcc
Q 015983            2 KSLKTLVLSGCLKLKKFPD------IVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRG-LPAS   74 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP~------~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~-lP~s   74 (397)
                      ++|+.|+|++| .++.+|.      +..|++++|.++.++ .              +..+++|++|+|++|.++. .|..
T Consensus        44 ~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~--------------l~~l~~L~~L~l~~n~l~~~~~~~  107 (197)
T 4ezg_A           44 NSLTYITLANI-NVTDLTGIEYAHNIKDLTINNIHATNYN-P--------------ISGLSNLERLRIMGKDVTSDKIPN  107 (197)
T ss_dssp             HTCCEEEEESS-CCSCCTTGGGCTTCSEEEEESCCCSCCG-G--------------GTTCTTCCEEEEECTTCBGGGSCC
T ss_pred             CCccEEeccCC-CccChHHHhcCCCCCEEEccCCCCCcch-h--------------hhcCCCCCEEEeECCccCcccChh
Confidence            46788888887 4445443      333888888666554 2              3567778888888887774 6677


Q ss_pred             ccCCCCCCEEEecCCCCCCC-CChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccccC
Q 015983           75 IELLSGNVLLNLKDRKNLKS-LPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIAQK  148 (397)
Q Consensus        75 i~~L~~L~~L~Ls~c~~l~~-LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~~l  148 (397)
                      ++.+++|+.|++++| .+.. .|..+..+++|++|++++|..+..+| .+..+++|+.|++++|.++.++.+..+
T Consensus       108 l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l  180 (197)
T 4ezg_A          108 LSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDF  180 (197)
T ss_dssp             CTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGC
T ss_pred             hcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccC
Confidence            777888888888874 4543 56667778888888888865577776 467777788888888877665544433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.41  E-value=1.9e-12  Score=123.73  Aligned_cols=139  Identities=20%  Similarity=0.225  Sum_probs=106.5

Q ss_pred             CCCCcEEeccCCCCCccCCCcc-----eEEeecCCccccc-hhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983            1 MKSLKTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELS-FAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG   65 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp-~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~   65 (397)
                      +++|+.|+++++ .++.+|...     .|+|++|.++.++ ..+..+++|+         ..+|.. +.+++|++|+|++
T Consensus         9 l~~l~~l~~~~~-~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~   86 (290)
T 1p9a_G            9 VASHLEVNCDKR-NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH   86 (290)
T ss_dssp             STTCCEEECTTS-CCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS
T ss_pred             cCCccEEECCCC-CCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC
Confidence            468999999996 677887533     3999999999875 4566666665         334443 6788888888888


Q ss_pred             CCCCcCCccccCCCCCCEEEecCCCCCCCCC-hhccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcccccc
Q 015983           66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLP-STINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP-~~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      |.|+.+|..+..+++|+.|+|++ +.+..+| ..+.++++|++|+|++| .+..+|. .+..+++|+.|++++|.++.++
T Consensus        87 N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  164 (290)
T 1p9a_G           87 NQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (290)
T ss_dssp             SCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             CcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCccC
Confidence            88888888888888888888888 5777776 46788888888888884 5666654 4677888888888888776654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.40  E-value=3.2e-12  Score=120.29  Aligned_cols=139  Identities=24%  Similarity=0.357  Sum_probs=111.5

Q ss_pred             CCCcEEeccCCCCCccCC--------CcceEEeecCCccccchhh-hhhhccc---------cccC-ccCCCCCCCCEEE
Q 015983            2 KSLKTLVLSGCLKLKKFP--------DIVQVLWDGTDIRELSFAI-ELLFRLV---------QEFP-EKTSSKDQLLEIH   62 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP--------~~~~L~Ls~n~l~~Lp~si-~~L~~L~---------~~~P-~~l~~l~~L~~L~   62 (397)
                      ++|+.|+|++|. ++.+|        .+..|+|++|.++.+|..+ ..+++|+         ..+| ..+..+++|++|+
T Consensus        37 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence            368999999983 44444        3444999999999998765 5566665         3334 4568899999999


Q ss_pred             eeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCChh-ccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcc
Q 015983           63 LEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPST-INGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKF  139 (397)
Q Consensus        63 Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~~-i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~  139 (397)
                      |++|.++.+|.. ++.+++|+.|+|++ +.+..+|.. +..+++|+.|++++| .+..+|. .+..+++|+.|++++|.+
T Consensus       116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          116 LDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcC
Confidence            999999988754 78999999999999 578888764 788999999999995 6777764 578899999999999988


Q ss_pred             cccc
Q 015983          140 AKAE  143 (397)
Q Consensus       140 ~~L~  143 (397)
                      +.++
T Consensus       194 ~~~~  197 (270)
T 2o6q_A          194 KRVP  197 (270)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            7654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.40  E-value=3e-12  Score=117.99  Aligned_cols=122  Identities=20%  Similarity=0.264  Sum_probs=73.5

Q ss_pred             cEEeccCCCCCccCCCcc-----eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc-ccCC
Q 015983            5 KTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS-IELL   78 (397)
Q Consensus         5 ~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s-i~~L   78 (397)
                      +.++.+++ .++.+|...     .|+|++|.|+.++..             .+..+++|++|+|++|.|+.+|.. +..+
T Consensus        22 ~~v~c~~~-~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~-------------~~~~l~~L~~L~L~~N~l~~i~~~~~~~l   87 (229)
T 3e6j_A           22 TTVDCRSK-RHASVPAGIPTNAQILYLHDNQITKLEPG-------------VFDSLINLKELYLGSNQLGALPVGVFDSL   87 (229)
T ss_dssp             TEEECTTS-CCSSCCSCCCTTCSEEECCSSCCCCCCTT-------------TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CEeEccCC-CcCccCCCCCCCCCEEEcCCCccCccCHH-------------HhhCccCCcEEECCCCCCCCcChhhcccC
Confidence            45677764 577777532     388888888876432             224555666666666666666543 4566


Q ss_pred             CCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccc
Q 015983           79 SGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKA  142 (397)
Q Consensus        79 ~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L  142 (397)
                      ++|+.|+|++ +.+..+|. .+..+++|++|+|++ +.+..+|..+..+++|+.|++++|.++.+
T Consensus        88 ~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N~l~~~  150 (229)
T 3e6j_A           88 TQLTVLDLGT-NQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQNQLKSI  150 (229)
T ss_dssp             TTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred             CCcCEEECCC-CcCCccChhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCCcCCcc
Confidence            6666666666 45555544 245566666666666 34556666566666666666666655543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.39  E-value=2.9e-12  Score=120.82  Aligned_cols=139  Identities=23%  Similarity=0.353  Sum_probs=106.3

Q ss_pred             CCCCcEEeccCCCCCcc------CCCcceEEeecCCccccchhhhhhhccc---------cc-cCccCCCCCCCCEEEee
Q 015983            1 MKSLKTLVLSGCLKLKK------FPDIVQVLWDGTDIRELSFAIELLFRLV---------QE-FPEKTSSKDQLLEIHLE   64 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~------lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~-~P~~l~~l~~L~~L~Ls   64 (397)
                      +++|+.|++++|. ++.      +|.+..|+|++|.++.++ .+..+++|+         .. .|..+..+++|++|+|+
T Consensus        40 l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           40 LNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             HTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ccceeeeeeCCCC-cccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            3578889988873 333      444555899998888765 566666655         22 33446888999999999


Q ss_pred             CCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcccc
Q 015983           65 GTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAK  141 (397)
Q Consensus        65 ~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~  141 (397)
                      +|.++.+|.. ++.+++|+.|+|++ +.+..+|. .+..+++|++|++++| .+..+|. .++.+++|+.|++++|.++.
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCC-CccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCc
Confidence            9999988765 78899999999998 47777765 4678999999999996 5666654 46889999999999998876


Q ss_pred             cc
Q 015983          142 AE  143 (397)
Q Consensus       142 L~  143 (397)
                      ++
T Consensus       196 ~~  197 (272)
T 3rfs_A          196 VP  197 (272)
T ss_dssp             CC
T ss_pred             cC
Confidence            44

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.39  E-value=1.3e-12  Score=140.83  Aligned_cols=141  Identities=18%  Similarity=0.234  Sum_probs=111.1

Q ss_pred             CCCCcEEeccCCCCCccCCC-------cceEEeecCCcc-ccchhhhhhhccc----------cccCccCCCCCCCCEEE
Q 015983            1 MKSLKTLVLSGCLKLKKFPD-------IVQVLWDGTDIR-ELSFAIELLFRLV----------QEFPEKTSSKDQLLEIH   62 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP~-------~~~L~Ls~n~l~-~Lp~si~~L~~L~----------~~~P~~l~~l~~L~~L~   62 (397)
                      +++|+.|+|++|...+.+|.       +..|+|++|.++ .+|..++.+++|+          +.+|..++.+++|++|+
T Consensus       465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  544 (768)
T 3rgz_A          465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD  544 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred             CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence            46889999999865545554       333899999988 7788888877776          57888888899999999


Q ss_pred             eeCCCCC-cCCcc-------------------------------------------------------------------
Q 015983           63 LEGTAIR-GLPAS-------------------------------------------------------------------   74 (397)
Q Consensus        63 Ls~~~i~-~lP~s-------------------------------------------------------------------   74 (397)
                      |++|.++ .+|..                                                                   
T Consensus       545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~  624 (768)
T 3rgz_A          545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT  624 (768)
T ss_dssp             CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred             CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence            9988776 45543                                                                   


Q ss_pred             ---ccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983           75 ---IELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus        75 ---i~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~  141 (397)
                         ++.+++|+.|+|++|+....+|..++.+++|+.|+|++|...+.+|..++.+++|+.|++++|+++.
T Consensus       625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g  694 (768)
T 3rgz_A          625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG  694 (768)
T ss_dssp             CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred             chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence               3345778889999854445788889999999999999977667889989999999999999998763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.39  E-value=2.5e-12  Score=122.83  Aligned_cols=139  Identities=14%  Similarity=0.260  Sum_probs=104.4

Q ss_pred             CCCcEEeccCCCCCccCC------CcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCC
Q 015983            2 KSLKTLVLSGCLKLKKFP------DIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGT   66 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP------~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~   66 (397)
                      ++|+.|++++| .++.+|      .+..|+|++|.++.++. +..+++|+         ..+|. +..+++|++|+|++|
T Consensus        46 ~~L~~L~l~~~-~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n  122 (291)
T 1h6t_A           46 NSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN  122 (291)
T ss_dssp             HTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS
T ss_pred             CcccEEEccCC-CcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC
Confidence            57899999998 455544      44449999999998887 66666665         33333 677888888888888


Q ss_pred             CCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccc
Q 015983           67 AIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIA  146 (397)
Q Consensus        67 ~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~  146 (397)
                      .++.++ .+..+++|+.|++++ +.+..+ ..+..+++|+.|++++| .+..++. +..+++|+.|++++|.++.++.+.
T Consensus       123 ~i~~~~-~l~~l~~L~~L~l~~-n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l~  197 (291)
T 1h6t_A          123 GISDIN-GLVHLPQLESLYLGN-NKITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNHISDLRALA  197 (291)
T ss_dssp             CCCCCG-GGGGCTTCCEEECCS-SCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCBCGGGT
T ss_pred             cCCCCh-hhcCCCCCCEEEccC-CcCCcc-hhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCCcCCCChhhc
Confidence            888774 577888888888888 567777 45778888888888885 6666665 778888888888888877766554


Q ss_pred             cC
Q 015983          147 QK  148 (397)
Q Consensus       147 ~l  148 (397)
                      .+
T Consensus       198 ~l  199 (291)
T 1h6t_A          198 GL  199 (291)
T ss_dssp             TC
T ss_pred             cC
Confidence            33

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.39  E-value=3.5e-12  Score=122.72  Aligned_cols=140  Identities=15%  Similarity=0.260  Sum_probs=110.8

Q ss_pred             CCCcEEeccCCCCCccCCC------cceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCC
Q 015983            2 KSLKTLVLSGCLKLKKFPD------IVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGT   66 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP~------~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~   66 (397)
                      ++|+.|++++| .++.+|.      +..|+|++|.++.++. +..+++|+         ..+| .+..+++|++|+|++|
T Consensus        41 ~~L~~L~l~~~-~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n  117 (308)
T 1h6u_A           41 DGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST  117 (308)
T ss_dssp             HTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred             CCcCEEEeeCC-CccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC
Confidence            57899999998 4555543      3349999999998887 77777665         3343 4678899999999999


Q ss_pred             CCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccc
Q 015983           67 AIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIA  146 (397)
Q Consensus        67 ~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~  146 (397)
                      .++.+|. +..+++|+.|++++ +.+..+|. +..+++|++|++++| .+..++. +..+++|+.|++++|.++.++.+.
T Consensus       118 ~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~  192 (308)
T 1h6u_A          118 QITDVTP-LAGLSNLQVLYLDL-NQITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDNKISDISPLA  192 (308)
T ss_dssp             CCCCCGG-GTTCTTCCEEECCS-SCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             CCCCchh-hcCCCCCCEEECCC-CccCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCCccCcChhhc
Confidence            9998875 88999999999998 57888876 788899999999985 6777766 788899999999999887766544


Q ss_pred             cCC
Q 015983          147 QKD  149 (397)
Q Consensus       147 ~l~  149 (397)
                      .++
T Consensus       193 ~l~  195 (308)
T 1h6u_A          193 SLP  195 (308)
T ss_dssp             GCT
T ss_pred             CCC
Confidence            333

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.38  E-value=2.2e-12  Score=124.11  Aligned_cols=136  Identities=15%  Similarity=0.229  Sum_probs=79.2

Q ss_pred             CCCCcEEeccCCCCCcc------CCCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983            1 MKSLKTLVLSGCLKLKK------FPDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG   65 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~------lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~   65 (397)
                      +++|+.|+|++| .+..      +|.+..|+|++|.++.+| .+..+++|+         ..+|. +..+++|++|+|++
T Consensus        62 l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~  138 (308)
T 1h6u_A           62 LNNLIGLELKDN-QITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL  138 (308)
T ss_dssp             CTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             cCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCC
Confidence            355666666666 2322      233333666666666654 344444443         22333 55666666666666


Q ss_pred             CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccc
Q 015983           66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAEL  144 (397)
Q Consensus        66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~  144 (397)
                      |.++.++. ++.+++|+.|+|++ +.+..+|. +..+++|+.|++++| .+..+|. +..+++|+.|++++|.++.++.
T Consensus       139 n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~  212 (308)
T 1h6u_A          139 NQITNISP-LAGLTNLQYLSIGN-AQVSDLTP-LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQISDVSP  212 (308)
T ss_dssp             SCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSCCCBCGG
T ss_pred             CccCcCcc-ccCCCCccEEEccC-CcCCCChh-hcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCCccCcccc
Confidence            66666655 66666666666666 35666655 666666666666663 4555544 4566666666666666655443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.38  E-value=1.6e-12  Score=113.36  Aligned_cols=123  Identities=21%  Similarity=0.293  Sum_probs=71.7

Q ss_pred             CCCcEEeccCCCCCc--cCCCcc-------eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCc-C
Q 015983            2 KSLKTLVLSGCLKLK--KFPDIV-------QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRG-L   71 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~--~lP~~~-------~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~-l   71 (397)
                      ++|+.|+|++|. +.  .+|...       .|+|++|.++.+ .              .+..+++|++|+|++|.++. +
T Consensus        24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~--------------~~~~l~~L~~L~Ls~N~l~~~~   87 (168)
T 2ell_A           24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV-S--------------NLPKLPKLKKLELSENRIFGGL   87 (168)
T ss_dssp             TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC-S--------------SCCCCSSCCEEEEESCCCCSCC
T ss_pred             ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh-h--------------hhccCCCCCEEECcCCcCchHH
Confidence            356666666663 33  444332       155555555543 1              13456666667777666665 5


Q ss_pred             CccccCCCCCCEEEecCCCCCCCCC--hhccCCCcCceeeeecccCCccCCc----ccCCCCCCcEEECCCCccccc
Q 015983           72 PASIELLSGNVLLNLKDRKNLKSLP--STINGLRCLRMLHLSGCSKLKNAPE----TLGKVESLESAVETVTKFAKA  142 (397)
Q Consensus        72 P~si~~L~~L~~L~Ls~c~~l~~LP--~~i~~L~sL~~L~Ls~C~~L~~lP~----~~~~L~~L~~L~ls~n~~~~L  142 (397)
                      |..+..+++|+.|+|++ +.+..+|  ..+..+++|++|++++| .+..+|.    .+..+++|+.|++++|.+.++
T Consensus        88 ~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A           88 DMLAEKLPNLTHLNLSG-NKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             CHHHHHCTTCCEEECBS-SSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             HHHHhhCCCCCEEeccC-CccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            55555566677777766 4566655  45666666677776663 4555554    556666666666666655443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.38  E-value=4.4e-12  Score=116.21  Aligned_cols=123  Identities=20%  Similarity=0.259  Sum_probs=83.6

Q ss_pred             cEEeccCCCCCccCCCc-----ceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcC-CccccCC
Q 015983            5 KTLVLSGCLKLKKFPDI-----VQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGL-PASIELL   78 (397)
Q Consensus         5 ~~L~LsgC~~L~~lP~~-----~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~l-P~si~~L   78 (397)
                      +.++++++ .++.+|..     ..|+|++|.|+.+|..             .+..+++|++|+|++|.|+.+ |..+..+
T Consensus        14 ~~v~c~~~-~l~~iP~~l~~~l~~L~l~~n~i~~i~~~-------------~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l   79 (220)
T 2v9t_B           14 NIVDCRGK-GLTEIPTNLPETITEIRLEQNTIKVIPPG-------------AFSPYKKLRRIDLSNNQISELAPDAFQGL   79 (220)
T ss_dssp             TEEECTTS-CCSSCCSSCCTTCCEEECCSSCCCEECTT-------------SSTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CEEEcCCC-CcCcCCCccCcCCCEEECCCCcCCCcCHh-------------HhhCCCCCCEEECCCCcCCCcCHHHhhCC
Confidence            45777775 67777753     3388888888877652             235666777777777777765 5567777


Q ss_pred             CCCCEEEecCCCCCCCCChh-ccCCCcCceeeeecccCCccC-CcccCCCCCCcEEECCCCcccccc
Q 015983           79 SGNVLLNLKDRKNLKSLPST-INGLRCLRMLHLSGCSKLKNA-PETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        79 ~~L~~L~Ls~c~~l~~LP~~-i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      ++|+.|+|++ +.+..+|.. +.++++|++|+|++| .+..+ |..+..+++|+.|++++|.++.++
T Consensus        80 ~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  144 (220)
T 2v9t_B           80 RSLNSLVLYG-NKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIA  144 (220)
T ss_dssp             SSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cCCCEEECCC-CcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence            7777777777 567777653 466777777777774 44444 456677777777777777766543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.38  E-value=4.3e-12  Score=118.16  Aligned_cols=135  Identities=21%  Similarity=0.293  Sum_probs=78.2

Q ss_pred             CCcEEeccCCCC-------CccCCCcceEEeecCCccccchh-hhhhhccc---------ccc-CccCCCCCCCCEEEee
Q 015983            3 SLKTLVLSGCLK-------LKKFPDIVQVLWDGTDIRELSFA-IELLFRLV---------QEF-PEKTSSKDQLLEIHLE   64 (397)
Q Consensus         3 sL~~L~LsgC~~-------L~~lP~~~~L~Ls~n~l~~Lp~s-i~~L~~L~---------~~~-P~~l~~l~~L~~L~Ls   64 (397)
                      +|+.|+|++|..       +..++.+..|+|++|.++.++.. +..+++|+         ..+ +..+..+++|++|+|+
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            466666666632       12223333366666666655443 34444443         222 2345566667777777


Q ss_pred             CCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcc
Q 015983           65 GTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKF  139 (397)
Q Consensus        65 ~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~  139 (397)
                      +|.|+.+|.. +..+++|+.|+|++ +.+..+|. .+..+++|++|+|++| .+..+|. .+..+++|+.|++++|++
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence            7777666654 46666777777766 45666654 4666667777777663 4444443 456666677777766654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.38  E-value=4.2e-12  Score=119.76  Aligned_cols=137  Identities=21%  Similarity=0.336  Sum_probs=84.7

Q ss_pred             CCCCcEEeccCCCCCcc------CCCcceEEeecCCccccchh-hhhhhccc---------ccc-CccCCCCCCCCEEEe
Q 015983            1 MKSLKTLVLSGCLKLKK------FPDIVQVLWDGTDIRELSFA-IELLFRLV---------QEF-PEKTSSKDQLLEIHL   63 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~------lP~~~~L~Ls~n~l~~Lp~s-i~~L~~L~---------~~~-P~~l~~l~~L~~L~L   63 (397)
                      +++|+.|+|++|. +..      ++.+..|+|++|.++.+|.. +..+++|+         ..+ |..++.+++|++|+|
T Consensus        62 l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           62 LPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             CTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence            4567777777763 333      33333477777777766654 34555554         222 333566777777777


Q ss_pred             eCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCccc
Q 015983           64 EGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFA  140 (397)
Q Consensus        64 s~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~  140 (397)
                      ++|.++.+|.. ++.+++|+.|++++ +.+..+|. .+..+++|++|++++| .+..+| ..++.+++|+.|++++|.+.
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCcc
Confidence            77777766654 46777777777777 35666554 3466777777777774 344443 34567777777777777543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.38  E-value=6.8e-13  Score=127.95  Aligned_cols=138  Identities=19%  Similarity=0.253  Sum_probs=107.7

Q ss_pred             CCCcEEeccCCCCCc--cCCC-------cceEEeec-CCcc-ccchhhhhhhccc----------cccCccCCCCCCCCE
Q 015983            2 KSLKTLVLSGCLKLK--KFPD-------IVQVLWDG-TDIR-ELSFAIELLFRLV----------QEFPEKTSSKDQLLE   60 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~--~lP~-------~~~L~Ls~-n~l~-~Lp~si~~L~~L~----------~~~P~~l~~l~~L~~   60 (397)
                      .+++.|+|++|..-+  .+|.       +..|+|++ |.+. .+|..++.+++|+          +.+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            367888998885433  4543       33388884 7777 6788888877776          467888888899999


Q ss_pred             EEeeCCCCC-cCCccccCCCCCCEEEecCCCCCC-CCChhccCCC-cCceeeeecccCCccCCcccCCCCCCcEEECCCC
Q 015983           61 IHLEGTAIR-GLPASIELLSGNVLLNLKDRKNLK-SLPSTINGLR-CLRMLHLSGCSKLKNAPETLGKVESLESAVETVT  137 (397)
Q Consensus        61 L~Ls~~~i~-~lP~si~~L~~L~~L~Ls~c~~l~-~LP~~i~~L~-sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n  137 (397)
                      |+|++|.++ .+|..++.+++|+.|+|++ +.+. .+|..+..++ +|++|++++|.....+|..+..+. |+.|++++|
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDG-NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCS-SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcC-CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            999999888 7888888899999999988 4565 7888888887 889999998655557888887776 888888888


Q ss_pred             cccc
Q 015983          138 KFAK  141 (397)
Q Consensus       138 ~~~~  141 (397)
                      .++.
T Consensus       208 ~l~~  211 (313)
T 1ogq_A          208 MLEG  211 (313)
T ss_dssp             EEEE
T ss_pred             cccC
Confidence            7764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.37  E-value=7.2e-12  Score=117.90  Aligned_cols=138  Identities=22%  Similarity=0.289  Sum_probs=112.8

Q ss_pred             CCcEEeccCCCCCccCCCc-----ceEEeecCCccccch-hhhhhhccc---------cccCc-cCCCCCCCCEEEeeCC
Q 015983            3 SLKTLVLSGCLKLKKFPDI-----VQVLWDGTDIRELSF-AIELLFRLV---------QEFPE-KTSSKDQLLEIHLEGT   66 (397)
Q Consensus         3 sL~~L~LsgC~~L~~lP~~-----~~L~Ls~n~l~~Lp~-si~~L~~L~---------~~~P~-~l~~l~~L~~L~Ls~~   66 (397)
                      +++.++++++ .++.+|..     ..|+|++|.++.+|. .+..+++|+         ..+|. .+..+++|++|+|++|
T Consensus        17 ~~~~l~~~~~-~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           17 NKNSVDCSSK-KLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTTEEECTTS-CCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCEEEccCC-CCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            4678999986 67788863     339999999999886 566677665         34444 4578999999999999


Q ss_pred             CCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcccccc
Q 015983           67 AIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        67 ~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      .++.+|.. +..+++|+.|+|++ +.+..+|. .+..+++|++|++++| .+..+|. .++.+++|+.|++++|.++.++
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cCCcCCHhHcccccCCCEEECCC-CccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeC
Confidence            99998865 68899999999999 57777764 5789999999999995 6777775 4788999999999999887654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.36  E-value=8.1e-13  Score=127.44  Aligned_cols=138  Identities=14%  Similarity=0.167  Sum_probs=104.4

Q ss_pred             CCCCcEEeccCCCCCccCCC-------cceEEeecCCcc-ccchhhhhhhccc----------cccCccCCCCC-CCCEE
Q 015983            1 MKSLKTLVLSGCLKLKKFPD-------IVQVLWDGTDIR-ELSFAIELLFRLV----------QEFPEKTSSKD-QLLEI   61 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP~-------~~~L~Ls~n~l~-~Lp~si~~L~~L~----------~~~P~~l~~l~-~L~~L   61 (397)
                      |++|++|+|++|...+.+|.       +..|+|++|.++ .+|..+..+++|+          +.+|..+..++ +|++|
T Consensus       100 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L  179 (313)
T 1ogq_A          100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM  179 (313)
T ss_dssp             CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred             CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence            57899999999854334543       344899999988 7888888777776          46788888887 89999


Q ss_pred             EeeCCCCC-cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccc
Q 015983           62 HLEGTAIR-GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFA  140 (397)
Q Consensus        62 ~Ls~~~i~-~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~  140 (397)
                      +|++|.++ .+|..+..++ |+.|+|++|..-..+|..+..+++|+.|++++|.....+| .+..+++|+.|++++|.++
T Consensus       180 ~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~  257 (313)
T 1ogq_A          180 TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             ECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCE
T ss_pred             ECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCccc
Confidence            99999888 7788888887 8888888843333567778888888888888854333344 3677888888888888776

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.36  E-value=2.7e-12  Score=121.47  Aligned_cols=142  Identities=18%  Similarity=0.193  Sum_probs=115.0

Q ss_pred             CCCCcEEeccCCCC-------CccCCCcceEEeecCC-cccc-chhhhhhhccc----------cccCccCCCCCCCCEE
Q 015983            1 MKSLKTLVLSGCLK-------LKKFPDIVQVLWDGTD-IREL-SFAIELLFRLV----------QEFPEKTSSKDQLLEI   61 (397)
Q Consensus         1 L~sL~~L~LsgC~~-------L~~lP~~~~L~Ls~n~-l~~L-p~si~~L~~L~----------~~~P~~l~~l~~L~~L   61 (397)
                      +++|++|+|++|..       +..++.+..|+|++|. ++.+ |..+..+++|+          ...|..+..+++|++|
T Consensus        55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  134 (285)
T 1ozn_A           55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL  134 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence            46899999999832       2234455559999997 8888 55667777665          3346678889999999


Q ss_pred             EeeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcc
Q 015983           62 HLEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKF  139 (397)
Q Consensus        62 ~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~  139 (397)
                      +|++|.++.+|.. ++.+++|+.|+|++ +.+..+|. .+..+++|++|++++|......|..+..+++|+.|++++|.+
T Consensus       135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          135 YLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence            9999999988865 88999999999999 57888876 588999999999999754444588899999999999999988


Q ss_pred             cccc
Q 015983          140 AKAE  143 (397)
Q Consensus       140 ~~L~  143 (397)
                      +.++
T Consensus       214 ~~~~  217 (285)
T 1ozn_A          214 SALP  217 (285)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            7754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.35  E-value=3.8e-12  Score=114.06  Aligned_cols=122  Identities=21%  Similarity=0.302  Sum_probs=96.0

Q ss_pred             cEEeccCCCCCccCCCcc-----eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcC-CccccCC
Q 015983            5 KTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGL-PASIELL   78 (397)
Q Consensus         5 ~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~l-P~si~~L   78 (397)
                      +.|+++++ .++.+|...     .|+|++|.|+.++..            ..+..+++|++|+|++|.|+.+ |..+..+
T Consensus        11 ~~l~~s~~-~l~~ip~~~~~~l~~L~l~~n~i~~~~~~------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   77 (192)
T 1w8a_A           11 TTVDCTGR-GLKEIPRDIPLHTTELLLNDNELGRISSD------------GLFGRLPHLVKLELKRNQLTGIEPNAFEGA   77 (192)
T ss_dssp             TEEECTTS-CCSSCCSCCCTTCSEEECCSCCCCSBCCS------------CSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             CEEEcCCC-CcCcCccCCCCCCCEEECCCCcCCccCCc------------cccccCCCCCEEECCCCCCCCcCHhHcCCc
Confidence            57888886 677777533     288888888877643            0135678899999999999977 6779999


Q ss_pred             CCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccc
Q 015983           79 SGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFA  140 (397)
Q Consensus        79 ~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~  140 (397)
                      ++|+.|+|++ +.+..+|. .+.++++|++|+|++|......|..+..+++|+.|++++|.+.
T Consensus        78 ~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           78 SHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            9999999998 57777754 5888999999999996444455778889999999999999765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.35  E-value=2.7e-12  Score=118.37  Aligned_cols=137  Identities=16%  Similarity=0.185  Sum_probs=95.4

Q ss_pred             CCcEEeccCCCCCccCC--------CcceEEeecCC-ccccch-hhhhhhccc----------cccC-ccCCCCCCCCEE
Q 015983            3 SLKTLVLSGCLKLKKFP--------DIVQVLWDGTD-IRELSF-AIELLFRLV----------QEFP-EKTSSKDQLLEI   61 (397)
Q Consensus         3 sL~~L~LsgC~~L~~lP--------~~~~L~Ls~n~-l~~Lp~-si~~L~~L~----------~~~P-~~l~~l~~L~~L   61 (397)
                      +|+.|+|++| .++.+|        .+..|++++|. ++.+|. .+..+++|+          ..+| ..+..+++|++|
T Consensus        32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            5788888887 344433        33348888886 777765 445555544          1233 445678888888


Q ss_pred             EeeCCCCCcCCccccCCCCCC---EEEecCCCCCCCCCh-hccCCCcCc-eeeeecccCCccCCcccCCCCCCcEEECCC
Q 015983           62 HLEGTAIRGLPASIELLSGNV---LLNLKDRKNLKSLPS-TINGLRCLR-MLHLSGCSKLKNAPETLGKVESLESAVETV  136 (397)
Q Consensus        62 ~Ls~~~i~~lP~si~~L~~L~---~L~Ls~c~~l~~LP~-~i~~L~sL~-~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~  136 (397)
                      +|++|.++.+|. +..+++|+   .|++++|..+..+|. .+.++++|+ .|++++| .+..+|.......+|+.|++++
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTT
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCC
Confidence            888888888887 77777777   888888447777765 477788888 8888884 6667776544447788888888


Q ss_pred             Cc-cccc
Q 015983          137 TK-FAKA  142 (397)
Q Consensus       137 n~-~~~L  142 (397)
                      |. ++.+
T Consensus       189 n~~l~~i  195 (239)
T 2xwt_C          189 NKYLTVI  195 (239)
T ss_dssp             CTTCCEE
T ss_pred             CCCcccC
Confidence            84 6654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.33  E-value=6.7e-12  Score=126.37  Aligned_cols=136  Identities=21%  Similarity=0.250  Sum_probs=67.1

Q ss_pred             CCCCcEEeccCCCCCc--------cCCCcceEEeecCCccccch-hhhhhhccc---------cccC-ccCCCCCCCCEE
Q 015983            1 MKSLKTLVLSGCLKLK--------KFPDIVQVLWDGTDIRELSF-AIELLFRLV---------QEFP-EKTSSKDQLLEI   61 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~--------~lP~~~~L~Ls~n~l~~Lp~-si~~L~~L~---------~~~P-~~l~~l~~L~~L   61 (397)
                      |++|+.|+|++|. +.        .++.+..|+|++|.|+.+|. .+..+++|+         ..+| ..+..+++|++|
T Consensus        87 l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  165 (440)
T 3zyj_A           87 LRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL  165 (440)
T ss_dssp             CSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence            3566667776662 22        22333346666666666654 244444443         1222 234455555555


Q ss_pred             EeeC-CCCCcCCc-cccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccC-CcccCCCCCCcEEECCCCc
Q 015983           62 HLEG-TAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNA-PETLGKVESLESAVETVTK  138 (397)
Q Consensus        62 ~Ls~-~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~~L~ls~n~  138 (397)
                      +|++ +.+..+|. .+..+++|+.|+|++ +.+..+|. +..+++|+.|+|++| .+..+ |..+..+++|+.|++++|.
T Consensus       166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~  242 (440)
T 3zyj_A          166 DLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPN-LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQ  242 (440)
T ss_dssp             ECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCC-CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CCCCCCCcceeCcchhhcccccCeecCCC-CcCccccc-cCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCc
Confidence            5555 24444443 345555555555555 34555553 445555555555553 23222 4445555555555555554


Q ss_pred             cc
Q 015983          139 FA  140 (397)
Q Consensus       139 ~~  140 (397)
                      ++
T Consensus       243 l~  244 (440)
T 3zyj_A          243 IQ  244 (440)
T ss_dssp             CC
T ss_pred             ee
Confidence            43

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.33  E-value=9.6e-12  Score=118.72  Aligned_cols=139  Identities=19%  Similarity=0.253  Sum_probs=112.1

Q ss_pred             CCCCcEEeccCCCCCcc-------CCCcceEEeecCCccccch--hhhhhhccc----------cccCccCCCCCCCCEE
Q 015983            1 MKSLKTLVLSGCLKLKK-------FPDIVQVLWDGTDIRELSF--AIELLFRLV----------QEFPEKTSSKDQLLEI   61 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~-------lP~~~~L~Ls~n~l~~Lp~--si~~L~~L~----------~~~P~~l~~l~~L~~L   61 (397)
                      +++|++|+|++|. +..       ++.+..|++++|.++.++.  .+..+++|+          ...|..+..+++|++|
T Consensus        77 ~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  155 (306)
T 2z66_A           77 TTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  155 (306)
T ss_dssp             CSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred             ccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence            4689999999983 333       4455559999999998875  566666665          3466778889999999


Q ss_pred             EeeCCCCCc--CCccccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCC
Q 015983           62 HLEGTAIRG--LPASIELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVT  137 (397)
Q Consensus        62 ~Ls~~~i~~--lP~si~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n  137 (397)
                      +|++|.++.  +|..+..+++|+.|+|++ +.+..+ |..+..+++|++|++++| .+..++. .+..+++|+.|++++|
T Consensus       156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          156 KMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             ECCCCccccccchhHHhhCcCCCEEECCC-CCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC
Confidence            999999985  788999999999999999 467666 678889999999999995 5666654 6788999999999999


Q ss_pred             ccccc
Q 015983          138 KFAKA  142 (397)
Q Consensus       138 ~~~~L  142 (397)
                      .++..
T Consensus       234 ~l~~~  238 (306)
T 2z66_A          234 HIMTS  238 (306)
T ss_dssp             CCCBC
T ss_pred             CCccc
Confidence            87653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.33  E-value=2.5e-12  Score=122.80  Aligned_cols=141  Identities=21%  Similarity=0.227  Sum_probs=115.9

Q ss_pred             CCCCcEEeccCCCCCcc----------CCCcceEEeecCCccccchhhhhhhccc---------cccC--ccCCCCCCCC
Q 015983            1 MKSLKTLVLSGCLKLKK----------FPDIVQVLWDGTDIRELSFAIELLFRLV---------QEFP--EKTSSKDQLL   59 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~----------lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P--~~l~~l~~L~   59 (397)
                      +++|+.|+|++|. ++.          ++.+..|+|++|.++.+|..+..+++|+         ..++  ..+..+++|+
T Consensus        51 l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  129 (306)
T 2z66_A           51 LTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  129 (306)
T ss_dssp             CTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCC
T ss_pred             cccCCEEECCCCc-cCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCC
Confidence            4789999999984 432          4566669999999999998887777776         3344  4678899999


Q ss_pred             EEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCC--CChhccCCCcCceeeeecccCCccC-CcccCCCCCCcEEECC
Q 015983           60 EIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKS--LPSTINGLRCLRMLHLSGCSKLKNA-PETLGKVESLESAVET  135 (397)
Q Consensus        60 ~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~--LP~~i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~~L~ls  135 (397)
                      +|+|++|.++.+ |..+..+++|+.|++++| .+..  +|..+..+++|++|++++| .+..+ |..+..+++|+.|+++
T Consensus       130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~  207 (306)
T 2z66_A          130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMS  207 (306)
T ss_dssp             EEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECT
T ss_pred             EEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECC
Confidence            999999999854 566889999999999994 5654  7888999999999999996 45555 7788999999999999


Q ss_pred             CCccccccc
Q 015983          136 VTKFAKAEL  144 (397)
Q Consensus       136 ~n~~~~L~~  144 (397)
                      +|.++.++.
T Consensus       208 ~N~l~~~~~  216 (306)
T 2z66_A          208 HNNFFSLDT  216 (306)
T ss_dssp             TSCCSBCCS
T ss_pred             CCccCccCh
Confidence            999877543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.33  E-value=5.3e-12  Score=118.89  Aligned_cols=124  Identities=16%  Similarity=0.220  Sum_probs=86.5

Q ss_pred             CCCCcEEeccCCCCCccCCC------cceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc
Q 015983            1 MKSLKTLVLSGCLKLKKFPD------IVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS   74 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP~------~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s   74 (397)
                      |++|+.|+|++| .++.+|.      +..|+|++|.|+.+|. +              ..+++|++|+|++|.++.+|..
T Consensus        40 l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l--------------~~l~~L~~L~L~~N~l~~l~~~  103 (263)
T 1xeu_A           40 LSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHNQISDLSP-L--------------KDLTKLEELSVNRNRLKNLNGI  103 (263)
T ss_dssp             HTTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-G--------------TTCSSCCEEECCSSCCSCCTTC
T ss_pred             cCcCcEEECcCC-CcccchHHhhCCCCCEEECCCCccCCChh-h--------------ccCCCCCEEECCCCccCCcCcc
Confidence            357888888887 4555553      3338888888877765 3              5667778888888888777654


Q ss_pred             ccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccc
Q 015983           75 IELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIA  146 (397)
Q Consensus        75 i~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~  146 (397)
                      ..  ++|+.|+|++ +.+..+|. +..+++|+.|++++| .+..+| .++.+++|+.|++++|.++.+..+.
T Consensus       104 ~~--~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~i~~~~~l~  169 (263)
T 1xeu_A          104 PS--ACLSRLFLDN-NELRDTDS-LIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNEITNTGGLT  169 (263)
T ss_dssp             CC--SSCCEEECCS-SCCSBSGG-GTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSCCCBCTTST
T ss_pred             cc--CcccEEEccC-CccCCChh-hcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCcCcchHHhc
Confidence            33  7788888887 46777664 777788888888774 566665 4667777888888888776654433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.33  E-value=6.7e-12  Score=132.64  Aligned_cols=81  Identities=17%  Similarity=0.127  Sum_probs=43.9

Q ss_pred             CCCCCCEEEeeCCCCCcCCccccC--------CCCCCEEEecCCCCCCCCChhcc--CCCcCceeeeecccCCccCCccc
Q 015983           54 SKDQLLEIHLEGTAIRGLPASIEL--------LSGNVLLNLKDRKNLKSLPSTIN--GLRCLRMLHLSGCSKLKNAPETL  123 (397)
Q Consensus        54 ~l~~L~~L~Ls~~~i~~lP~si~~--------L~~L~~L~Ls~c~~l~~LP~~i~--~L~sL~~L~Ls~C~~L~~lP~~~  123 (397)
                      .+++|++|+|++|.++.+|..+..        +++|+.|+|++ +.+..+|..+.  .+++|+.|+|++| .+..+|..+
T Consensus       455 ~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~  532 (636)
T 4eco_A          455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF-NKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQP  532 (636)
T ss_dssp             TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCS-SCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGG
T ss_pred             cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcC-CcCCccChhhhhccCCCcCEEECCCC-CCCCcChhh
Confidence            355566666666666555544222        11566666665 34555555554  5566666666653 344455555


Q ss_pred             CCCCCCcEEECCC
Q 015983          124 GKVESLESAVETV  136 (397)
Q Consensus       124 ~~L~~L~~L~ls~  136 (397)
                      ..+++|+.|++++
T Consensus       533 ~~l~~L~~L~Ls~  545 (636)
T 4eco_A          533 LNSSTLKGFGIRN  545 (636)
T ss_dssp             GGCSSCCEEECCS
T ss_pred             hcCCCCCEEECCC
Confidence            5556666666543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.33  E-value=1.1e-11  Score=111.28  Aligned_cols=118  Identities=24%  Similarity=0.377  Sum_probs=81.7

Q ss_pred             cEEeccCCCCCccCCCcc-----eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc-cccCC
Q 015983            5 KTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA-SIELL   78 (397)
Q Consensus         5 ~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~-si~~L   78 (397)
                      +.++++++ .++.+|...     .|+|++|.|+.+|..+              ..+++|++|+|++|.|+.++. .+..+
T Consensus        13 ~~l~~~~~-~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~--------------~~l~~L~~L~Ls~N~i~~i~~~~f~~l   77 (193)
T 2wfh_A           13 TVVRCSNK-GLKVLPKGIPRDVTELYLDGNQFTLVPKEL--------------SNYKHLTLIDLSNNRISTLSNQSFSNM   77 (193)
T ss_dssp             TEEECTTS-CCSSCCSCCCTTCCEEECCSSCCCSCCGGG--------------GGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CEEEcCCC-CCCcCCCCCCCCCCEEECCCCcCchhHHHh--------------hcccCCCEEECCCCcCCEeCHhHccCC
Confidence            45667765 466666432     2777777777666543              456677888888888877764 47778


Q ss_pred             CCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcc
Q 015983           79 SGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKF  139 (397)
Q Consensus        79 ~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~  139 (397)
                      ++|+.|+|++ +.+..+|. .+.++++|++|+|++ +.+..+|. .+..+++|+.|++++|++
T Consensus        78 ~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           78 TQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             TTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCEEECCC-CccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence            8888888887 56766654 577778888888887 45666665 466777788888877765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.32  E-value=9.8e-12  Score=125.59  Aligned_cols=138  Identities=18%  Similarity=0.198  Sum_probs=68.2

Q ss_pred             CCCCcEEeccCCCC-------CccCCCcceEEeecCCccccchh-hhhhhccc---------cccC-ccCCCCCCCCEEE
Q 015983            1 MKSLKTLVLSGCLK-------LKKFPDIVQVLWDGTDIRELSFA-IELLFRLV---------QEFP-EKTSSKDQLLEIH   62 (397)
Q Consensus         1 L~sL~~L~LsgC~~-------L~~lP~~~~L~Ls~n~l~~Lp~s-i~~L~~L~---------~~~P-~~l~~l~~L~~L~   62 (397)
                      |++|+.|+|++|..       +..++.+..|+|++|.++.+|.. +..+++|+         ..+| ..+..+++|++|+
T Consensus        98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  177 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD  177 (452)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence            35677777777621       12233333466777766666554 34444443         2222 2344555555555


Q ss_pred             eeC-CCCCcCCc-cccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccc
Q 015983           63 LEG-TAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFA  140 (397)
Q Consensus        63 Ls~-~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~  140 (397)
                      |++ +.+..+|. .+..+++|+.|+|++ +.+..+|. +..+++|+.|+|++|......|..+..+++|+.|++++|.++
T Consensus       178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  255 (452)
T 3zyi_A          178 LGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS  255 (452)
T ss_dssp             CCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred             CCCCCCccccChhhccCCCCCCEEECCC-Cccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence            555 34444443 245555555555555 34555543 444555555555553222222444555555555555555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.32  E-value=8.5e-12  Score=122.63  Aligned_cols=136  Identities=18%  Similarity=0.155  Sum_probs=98.0

Q ss_pred             cEEeccCCCCCccCCCcc-----eEEeecCCccccchhh-h-hhhccc---------ccc-CccCCCCCCCCEEEeeCCC
Q 015983            5 KTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSFAI-E-LLFRLV---------QEF-PEKTSSKDQLLEIHLEGTA   67 (397)
Q Consensus         5 ~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~si-~-~L~~L~---------~~~-P~~l~~l~~L~~L~Ls~~~   67 (397)
                      +.++++++ .|+.+|...     .|+|++|.|+.++... . .+++|+         ..+ |..+..+++|++|+|++|.
T Consensus        21 ~~l~c~~~-~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           21 NILSCSKQ-QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             TEEECCSS-CCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCC-CcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            46777775 677777533     2899999988887653 2 444443         223 3457788888888888888


Q ss_pred             CCcCCc-cccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccCCccc----CCCCCCcEEECCCCcccc
Q 015983           68 IRGLPA-SIELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNAPETL----GKVESLESAVETVTKFAK  141 (397)
Q Consensus        68 i~~lP~-si~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~lP~~~----~~L~~L~~L~ls~n~~~~  141 (397)
                      |+.+|. .+..+++|+.|+|++ +.+..+ |..+.++++|+.|+|++ +.+..+|...    ..+++|+.|++++|.++.
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            887765 477888888888888 566666 56788888888888888 4677777653    567888888888888776


Q ss_pred             cc
Q 015983          142 AE  143 (397)
Q Consensus       142 L~  143 (397)
                      ++
T Consensus       178 l~  179 (361)
T 2xot_A          178 LP  179 (361)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.32  E-value=3.3e-12  Score=137.79  Aligned_cols=138  Identities=18%  Similarity=0.179  Sum_probs=98.1

Q ss_pred             CCcEEeccCCCCCcc---------CCCcceEEeecCCcc-ccchhhhhhhccc----------cccCccCCCCCCCCEEE
Q 015983            3 SLKTLVLSGCLKLKK---------FPDIVQVLWDGTDIR-ELSFAIELLFRLV----------QEFPEKTSSKDQLLEIH   62 (397)
Q Consensus         3 sL~~L~LsgC~~L~~---------lP~~~~L~Ls~n~l~-~Lp~si~~L~~L~----------~~~P~~l~~l~~L~~L~   62 (397)
                      +|+.|+|++|...+.         ++.+..|++++|.++ .+|..+..+++|+          +.+|..++.+++|++|+
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  448 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK  448 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence            688888888743322         233444788888777 6677777666665          45677777777788888


Q ss_pred             eeCCCCC-cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccc
Q 015983           63 LEGTAIR-GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFA  140 (397)
Q Consensus        63 Ls~~~i~-~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~  140 (397)
                      |++|.++ .+|..++.+++|+.|+|++|.....+|..+.++++|++|++++|...+.+|..++.+++|+.|++++|.++
T Consensus       449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  527 (768)
T 3rgz_A          449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS  527 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence            8877777 67777777777888888775444466777777777888888776655577777777777777777777765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.30  E-value=9.5e-12  Score=120.37  Aligned_cols=83  Identities=13%  Similarity=0.211  Sum_probs=51.1

Q ss_pred             CCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCC-hhccCCCcCceeeeecccCCccCC-cccCCCCCCcEEEC
Q 015983           57 QLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLP-STINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVE  134 (397)
Q Consensus        57 ~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP-~~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~l  134 (397)
                      +|++|++++|.++.+|..+.  ++|+.|++++ +.+..++ ..+..+++|++|++++| .+..++ ..+..+++|+.|++
T Consensus       173 ~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L  248 (332)
T 2ft3_A          173 KLNYLRISEAKLTGIPKDLP--ETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHL  248 (332)
T ss_dssp             CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCS-SCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEEC
T ss_pred             ccCEEECcCCCCCccCcccc--CCCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEEC
Confidence            44444444444444444332  4667777776 4555554 56777778888888874 444444 45677777888888


Q ss_pred             CCCcccccc
Q 015983          135 TVTKFAKAE  143 (397)
Q Consensus       135 s~n~~~~L~  143 (397)
                      ++|.++.++
T Consensus       249 ~~N~l~~lp  257 (332)
T 2ft3_A          249 DNNKLSRVP  257 (332)
T ss_dssp             CSSCCCBCC
T ss_pred             CCCcCeecC
Confidence            877766544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.30  E-value=2.7e-11  Score=109.30  Aligned_cols=119  Identities=20%  Similarity=0.313  Sum_probs=57.4

Q ss_pred             EEeccCCCCCccCCC-----cceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc-ccCCC
Q 015983            6 TLVLSGCLKLKKFPD-----IVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS-IELLS   79 (397)
Q Consensus         6 ~L~LsgC~~L~~lP~-----~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s-i~~L~   79 (397)
                      .++.+++ .+..+|.     +..|+|++|.++.+|...             +..+++|++|+|++|.++.+|.. +..++
T Consensus        11 ~v~c~~~-~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   76 (208)
T 2o6s_A           11 TVECYSQ-GRTSVPTGIPAQTTYLDLETNSLKSLPNGV-------------FDELTSLTQLYLGGNKLQSLPNGVFNKLT   76 (208)
T ss_dssp             EEECCSS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTT-------------TTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             EEEecCC-CccCCCCCCCCCCcEEEcCCCccCcCChhh-------------hcccccCcEEECCCCccCccChhhcCCCC
Confidence            4555554 4455553     223777777777665432             23444455555555555544433 34455


Q ss_pred             CCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCccc
Q 015983           80 GNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFA  140 (397)
Q Consensus        80 ~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~  140 (397)
                      +|+.|+|++ +.+..+|. .+..+++|++|++++| .+..+|. .+..+++|+.|++++|.++
T Consensus        77 ~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           77 SLTYLNLST-NQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             TCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCEEECCC-CcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccc
Confidence            555555554 34444433 2344555555555542 3333332 2344455555555555444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.30  E-value=5.3e-12  Score=121.42  Aligned_cols=141  Identities=16%  Similarity=0.085  Sum_probs=107.5

Q ss_pred             CCCCcEEeccCCCCCccCCC---------cceEEeecCCccccchhhhhh-----hccc----------cccCccCCCCC
Q 015983            1 MKSLKTLVLSGCLKLKKFPD---------IVQVLWDGTDIRELSFAIELL-----FRLV----------QEFPEKTSSKD   56 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP~---------~~~L~Ls~n~l~~Lp~si~~L-----~~L~----------~~~P~~l~~l~   56 (397)
                      +++|++|+|++|...+.+|.         +..|+|++|.++.+|..+..+     ++|+          ...|..++.++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            46899999999864444554         334999999999888877776     5665          33447788999


Q ss_pred             CCCEEEeeCCCCCc---CCccc--cCCCCCCEEEecCCCCCCCCCh----hccCCCcCceeeeecccCCccCC--cccCC
Q 015983           57 QLLEIHLEGTAIRG---LPASI--ELLSGNVLLNLKDRKNLKSLPS----TINGLRCLRMLHLSGCSKLKNAP--ETLGK  125 (397)
Q Consensus        57 ~L~~L~Ls~~~i~~---lP~si--~~L~~L~~L~Ls~c~~l~~LP~----~i~~L~sL~~L~Ls~C~~L~~lP--~~~~~  125 (397)
                      +|++|+|++|.+..   +|..+  +.+++|+.|+|++ +.+..+|.    .+..+++|++|++++| .+...+  ..+..
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~  251 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN-AGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDW  251 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT-SCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCC
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC-CcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhh
Confidence            99999999998763   45555  8899999999999 57875542    3457799999999996 455543  34566


Q ss_pred             CCCCcEEECCCCcccccc
Q 015983          126 VESLESAVETVTKFAKAE  143 (397)
Q Consensus       126 L~~L~~L~ls~n~~~~L~  143 (397)
                      +++|+.|++++|.++.++
T Consensus       252 l~~L~~L~Ls~N~l~~ip  269 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLKQVP  269 (312)
T ss_dssp             CTTCCEEECTTSCCSSCC
T ss_pred             cCCCCEEECCCCccChhh
Confidence            889999999999887654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.30  E-value=6.6e-12  Score=130.88  Aligned_cols=140  Identities=16%  Similarity=0.072  Sum_probs=105.8

Q ss_pred             CCCCcEEeccCCCCCc----------cCCCcceEEeecCCccccchhhhhhhccc----------cccC-ccCCCCCCCC
Q 015983            1 MKSLKTLVLSGCLKLK----------KFPDIVQVLWDGTDIRELSFAIELLFRLV----------QEFP-EKTSSKDQLL   59 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~----------~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~----------~~~P-~~l~~l~~L~   59 (397)
                      +++|+.|+|++|. +.          .+|.+..|++++|.++.+|..+..+++|+          ...| ..+..+++|+
T Consensus       349 l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  427 (606)
T 3vq2_A          349 LPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL  427 (606)
T ss_dssp             CTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred             CCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence            4688999999883 33          33455558899888888887777777665          2233 4677888899


Q ss_pred             EEEeeCCCCCc-CCccccCCCCCCEEEecCCCCCCC--CChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCC
Q 015983           60 EIHLEGTAIRG-LPASIELLSGNVLLNLKDRKNLKS--LPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETV  136 (397)
Q Consensus        60 ~L~Ls~~~i~~-lP~si~~L~~L~~L~Ls~c~~l~~--LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~  136 (397)
                      +|++++|.++. .|..++.+++|+.|++++| .+..  +|..+..+++|++|++++|......|..++.+++|+.|++++
T Consensus       428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  506 (606)
T 3vq2_A          428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH  506 (606)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEECcCCCCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence            99998888875 5667888888899988884 5543  677888888888888888754455567788888888888888


Q ss_pred             Cccccc
Q 015983          137 TKFAKA  142 (397)
Q Consensus       137 n~~~~L  142 (397)
                      |.++.+
T Consensus       507 N~l~~~  512 (606)
T 3vq2_A          507 NNLLFL  512 (606)
T ss_dssp             SCCSCE
T ss_pred             CcCCCc
Confidence            887664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.30  E-value=1.1e-11  Score=130.50  Aligned_cols=142  Identities=13%  Similarity=0.264  Sum_probs=104.1

Q ss_pred             CCCCcEEeccCCCCCccCC------CcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983            1 MKSLKTLVLSGCLKLKKFP------DIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG   65 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP------~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~   65 (397)
                      |++|+.|+|++| .+..+|      .+..|+|++|.|+.+|. +..|++|+         ..+| .+..|++|++|+|++
T Consensus        42 L~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           42 LNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HTTCCCCBCTTC-CCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCC-CCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence            357888888887 344444      34448888888888776 66666665         3333 567888888999988


Q ss_pred             CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccccc
Q 015983           66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELI  145 (397)
Q Consensus        66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l  145 (397)
                      |.|+.+| .+..|++|+.|+|++ +.+..+ ..+..+++|+.|+|++| .+..++. +..+++|+.|++++|.++.++.+
T Consensus       119 N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l  193 (605)
T 1m9s_A          119 NGISDIN-GLVHLPQLESLYLGN-NKITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNHISDLRAL  193 (605)
T ss_dssp             SCCCCCG-GGGGCTTCSEEECCS-SCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCBCGGG
T ss_pred             CCCCCCc-cccCCCccCEEECCC-CccCCc-hhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCCCCCCChHH
Confidence            8888864 578888888888888 577777 45788888888888885 5555554 77888888888888888776655


Q ss_pred             ccCCC
Q 015983          146 AQKDS  150 (397)
Q Consensus       146 ~~l~~  150 (397)
                      ..++.
T Consensus       194 ~~l~~  198 (605)
T 1m9s_A          194 AGLKN  198 (605)
T ss_dssp             TTCTT
T ss_pred             ccCCC
Confidence            54443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.30  E-value=2.1e-11  Score=112.28  Aligned_cols=124  Identities=21%  Similarity=0.244  Sum_probs=100.1

Q ss_pred             CCCcEEeccCCCCCc-------cCCCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc
Q 015983            2 KSLKTLVLSGCLKLK-------KFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS   74 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~-------~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s   74 (397)
                      ++|+.|+|++|...+       .++.+..|+|++|.|+.+|...             +..+++|++|+|++|.|+.+|..
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~-------------~~~l~~L~~L~Ls~N~l~~l~~~  106 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV-------------FDSLTQLTVLDLGTNQLTVLPSA  106 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------------TTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh-------------cccCCCcCEEECCCCcCCccChh
Confidence            478999999984322       2333444999999998887543             36788899999999999988865


Q ss_pred             -ccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCccc
Q 015983           75 -IELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFA  140 (397)
Q Consensus        75 -i~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~  140 (397)
                       +..+++|+.|+|++ +.+..+|..+..+++|++|+|++| .+..+| ..+..+++|+.|++++|.+.
T Consensus       107 ~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          107 VFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             HhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence             68899999999998 688899998999999999999994 777777 45788899999999998764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.30  E-value=2.4e-12  Score=113.45  Aligned_cols=121  Identities=17%  Similarity=0.203  Sum_probs=71.9

Q ss_pred             CCCcEEeccCCCCCccCCCc-------ceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc
Q 015983            2 KSLKTLVLSGCLKLKKFPDI-------VQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS   74 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP~~-------~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s   74 (397)
                      .+|+.|+|++| .++.+|.+       ..|+|++|.|+.++ .              +..+++|++|+|++|.|+.+|..
T Consensus        19 ~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~-~--------------l~~l~~L~~L~Ls~N~l~~~~~~   82 (176)
T 1a9n_A           19 VRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLD-G--------------FPLLRRLKTLLVNNNRICRIGEG   82 (176)
T ss_dssp             TSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEEC-C--------------CCCCSSCCEEECCSSCCCEECSC
T ss_pred             CCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCCCCccc-c--------------cccCCCCCEEECCCCcccccCcc
Confidence            45677777776 44444432       22666666665541 1              24556666666666666666654


Q ss_pred             c-cCCCCCCEEEecCCCCCCCCCh--hccCCCcCceeeeecccCCccCCcc----cCCCCCCcEEECCCCccc
Q 015983           75 I-ELLSGNVLLNLKDRKNLKSLPS--TINGLRCLRMLHLSGCSKLKNAPET----LGKVESLESAVETVTKFA  140 (397)
Q Consensus        75 i-~~L~~L~~L~Ls~c~~l~~LP~--~i~~L~sL~~L~Ls~C~~L~~lP~~----~~~L~~L~~L~ls~n~~~  140 (397)
                      + ..+++|+.|+|++ +.+..+|.  .+..+++|+.|++++| .+..+|..    +..+++|+.|+++.|...
T Consensus        83 ~~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           83 LDQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HHHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             hhhcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            3 6666666666666 45666665  5666666666666663 45555553    556666666666665443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.30  E-value=9.3e-12  Score=131.57  Aligned_cols=142  Identities=15%  Similarity=0.105  Sum_probs=114.4

Q ss_pred             CCCcEEeccCCCCCccCC--------------CcceEEeecCCccccchhhhh-hhccc---------cccCccCCC---
Q 015983            2 KSLKTLVLSGCLKLKKFP--------------DIVQVLWDGTDIRELSFAIEL-LFRLV---------QEFPEKTSS---   54 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP--------------~~~~L~Ls~n~l~~Lp~si~~-L~~L~---------~~~P~~l~~---   54 (397)
                      ++|+.|+|++|...+.+|              .+..|+|++|.++.+|..+.. +++|+         ..+|.....   
T Consensus       402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~  481 (636)
T 4eco_A          402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN  481 (636)
T ss_dssp             SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred             CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence            479999999986544333              344499999999999987643 66665         445553322   


Q ss_pred             -----CCCCCEEEeeCCCCCcCCcccc--CCCCCCEEEecCCCCCCCCChhccCCCcCceeeee------cccCCccCCc
Q 015983           55 -----KDQLLEIHLEGTAIRGLPASIE--LLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLS------GCSKLKNAPE  121 (397)
Q Consensus        55 -----l~~L~~L~Ls~~~i~~lP~si~--~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls------~C~~L~~lP~  121 (397)
                           +++|++|+|++|.|+.+|..+.  .+++|+.|+|++ +.+..+|..+..+++|+.|+|+      +|...+.+|.
T Consensus       482 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~  560 (636)
T 4eco_A          482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE  560 (636)
T ss_dssp             EECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred             ccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCC-CCCCCcChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence                 2389999999999999999987  999999999999 6788899999999999999995      4555778999


Q ss_pred             ccCCCCCCcEEECCCCccccccc
Q 015983          122 TLGKVESLESAVETVTKFAKAEL  144 (397)
Q Consensus       122 ~~~~L~~L~~L~ls~n~~~~L~~  144 (397)
                      .++.+++|+.|++++|.++.++.
T Consensus       561 ~l~~l~~L~~L~Ls~N~l~~ip~  583 (636)
T 4eco_A          561 GITLCPSLTQLQIGSNDIRKVNE  583 (636)
T ss_dssp             TGGGCSSCCEEECCSSCCCBCCS
T ss_pred             HHhcCCCCCEEECCCCcCCccCH
Confidence            99999999999999999876654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.30  E-value=8.6e-12  Score=119.13  Aligned_cols=135  Identities=19%  Similarity=0.271  Sum_probs=111.0

Q ss_pred             CCCCcEEeccCCCCCccC------CCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983            1 MKSLKTLVLSGCLKLKKF------PDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG   65 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~l------P~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~   65 (397)
                      +++|+.|+|++| .++.+      +.+..|+|++|.++.+|. +..+++|+         ..+ +.+..+++|++|+|++
T Consensus        67 l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~  143 (291)
T 1h6t_A           67 LPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGN  143 (291)
T ss_dssp             CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCS
T ss_pred             CCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccC
Confidence            578999999998 44444      344459999999998775 66666665         333 3467889999999999


Q ss_pred             CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983           66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      |.++.+ ..+..+++|+.|++++ +.+..++. +..+++|+.|++++| .+..+|. +..+++|+.|++++|.++..+
T Consensus       144 n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          144 NKITDI-TVLSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             SCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred             CcCCcc-hhhccCCCCCEEEccC-Cccccchh-hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCcccCCc
Confidence            999998 6789999999999999 58888877 899999999999995 7888875 788999999999999876533

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.30  E-value=4.9e-12  Score=138.29  Aligned_cols=137  Identities=19%  Similarity=0.240  Sum_probs=91.8

Q ss_pred             CCCCcEEeccCCCCCccCCCcc-------eEEeecCC-ccc--cchhhhhhh-------ccc---------cccCc--cC
Q 015983            1 MKSLKTLVLSGCLKLKKFPDIV-------QVLWDGTD-IRE--LSFAIELLF-------RLV---------QEFPE--KT   52 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP~~~-------~L~Ls~n~-l~~--Lp~si~~L~-------~L~---------~~~P~--~l   52 (397)
                      |++|+.|+|++|...+.+|...       .|+|++|. ++.  +|..++.++       +|+         ..+|.  .+
T Consensus       490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l  569 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL  569 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred             CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence            5789999999998777777433       39999998 884  999888776       443         35565  56


Q ss_pred             CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCc-CceeeeecccCCccCCcccCCCCC--C
Q 015983           53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRC-LRMLHLSGCSKLKNAPETLGKVES--L  129 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~s-L~~L~Ls~C~~L~~lP~~~~~L~~--L  129 (397)
                      +.+++|+.|+|++|.++.+| .++.+++|+.|+|++ +.+..+|..+..+++ |+.|+|++| .+..+|..+..+..  |
T Consensus       570 ~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~-N~l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L  646 (876)
T 4ecn_A          570 QKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDY-NQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVM  646 (876)
T ss_dssp             TTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCS-SCCSCCCTTSCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCE
T ss_pred             hcCCCCCEEECCCCCcccch-hhcCCCcceEEECcC-CccccchHHHhhccccCCEEECcCC-CCCcCchhhhccccCCC
Confidence            66666666666666666666 666666666666666 345566666666666 666666664 35566655554433  6


Q ss_pred             cEEECCCCccc
Q 015983          130 ESAVETVTKFA  140 (397)
Q Consensus       130 ~~L~ls~n~~~  140 (397)
                      +.|++++|.+.
T Consensus       647 ~~L~Ls~N~l~  657 (876)
T 4ecn_A          647 GSVDFSYNKIG  657 (876)
T ss_dssp             EEEECCSSCTT
T ss_pred             CEEECcCCcCC
Confidence            66666666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.29  E-value=1.9e-11  Score=118.04  Aligned_cols=138  Identities=16%  Similarity=0.267  Sum_probs=99.4

Q ss_pred             CCCCcEEeccCCCCCccC--------CCcceEEeecCCccccchhhh-hhhccc-------cccCccCCCCCCCCEEEee
Q 015983            1 MKSLKTLVLSGCLKLKKF--------PDIVQVLWDGTDIRELSFAIE-LLFRLV-------QEFPEKTSSKDQLLEIHLE   64 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~l--------P~~~~L~Ls~n~l~~Lp~si~-~L~~L~-------~~~P~~l~~l~~L~~L~Ls   64 (397)
                      +++|++|+|++|. ++.+        +.+..|+|++|.++.+|..+. +|+.|.       ...+..+..+++|++|+|+
T Consensus        75 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  153 (330)
T 1xku_A           75 LKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG  153 (330)
T ss_dssp             CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred             CCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence            4678999999884 3333        334448999999988887653 344433       2233446778888999998


Q ss_pred             CCCCC---cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccC-CcccCCCCCCcEEECCCCccc
Q 015983           65 GTAIR---GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNA-PETLGKVESLESAVETVTKFA  140 (397)
Q Consensus        65 ~~~i~---~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~~L~ls~n~~~  140 (397)
                      +|.++   ..|..+..+++|+.|++++ +.+..+|..+.  ++|++|++++|. +..+ |..+..+++|+.|++++|.++
T Consensus       154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~  229 (330)
T 1xku_A          154 TNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQGLP--PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSIS  229 (330)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCSSCC--TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             CCcCCccCcChhhccCCCCcCEEECCC-CccccCCcccc--ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCc
Confidence            88886   3456788888899999888 57888887653  788888888864 4444 667888888888888888776


Q ss_pred             ccc
Q 015983          141 KAE  143 (397)
Q Consensus       141 ~L~  143 (397)
                      .+.
T Consensus       230 ~~~  232 (330)
T 1xku_A          230 AVD  232 (330)
T ss_dssp             EEC
T ss_pred             eeC
Confidence            543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.28  E-value=2e-11  Score=133.48  Aligned_cols=81  Identities=15%  Similarity=0.101  Sum_probs=44.2

Q ss_pred             CCCCCCEEEeeCCCCCcCCccccCCC--------CCCEEEecCCCCCCCCChhcc--CCCcCceeeeecccCCccCCccc
Q 015983           54 SKDQLLEIHLEGTAIRGLPASIELLS--------GNVLLNLKDRKNLKSLPSTIN--GLRCLRMLHLSGCSKLKNAPETL  123 (397)
Q Consensus        54 ~l~~L~~L~Ls~~~i~~lP~si~~L~--------~L~~L~Ls~c~~l~~LP~~i~--~L~sL~~L~Ls~C~~L~~lP~~~  123 (397)
                      .+++|+.|+|++|.|+.+|..+....        +|+.|+|++ +.+..+|..+.  .+++|+.|+|++| .+..+|..+
T Consensus       695 ~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~-N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l  772 (876)
T 4ecn_A          695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF-NKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQP  772 (876)
T ss_dssp             TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCS-SCCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGG
T ss_pred             cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCC-CCCccchHHhhhccCCCcCEEEeCCC-CCCccchhh
Confidence            45556666666665555555433221        556666655 34555555554  5556666666553 344455555


Q ss_pred             CCCCCCcEEECCC
Q 015983          124 GKVESLESAVETV  136 (397)
Q Consensus       124 ~~L~~L~~L~ls~  136 (397)
                      ..+++|+.|++++
T Consensus       773 ~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          773 LNSSQLKAFGIRH  785 (876)
T ss_dssp             GGCTTCCEEECCC
T ss_pred             hcCCCCCEEECCC
Confidence            5555566665554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.28  E-value=1.2e-11  Score=111.05  Aligned_cols=93  Identities=13%  Similarity=0.161  Sum_probs=61.0

Q ss_pred             CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCC-CChhccCCCcCceeeeecccCCccCCcccCCCCCCcE
Q 015983           53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKS-LPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLES  131 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~-LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~  131 (397)
                      ..+++|++|++++|.++.++ .+..+++|+.|++++ +.+.. .|..+..+++|++|++++|......|..++.+++|+.
T Consensus        63 ~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~  140 (197)
T 4ezg_A           63 EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMG-KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS  140 (197)
T ss_dssp             GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEEC-TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred             hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeEC-CccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence            45566777777777666554 566777777777777 34543 4666777777777777775443345666677777777


Q ss_pred             EECCCCc-ccccccccc
Q 015983          132 AVETVTK-FAKAELIAQ  147 (397)
Q Consensus       132 L~ls~n~-~~~L~~l~~  147 (397)
                      |++++|. ++.++.+..
T Consensus       141 L~L~~n~~i~~~~~l~~  157 (197)
T 4ezg_A          141 IDLSYNGAITDIMPLKT  157 (197)
T ss_dssp             EECCSCTBCCCCGGGGG
T ss_pred             EEccCCCCccccHhhcC
Confidence            7777776 555554433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.27  E-value=7.7e-12  Score=122.05  Aligned_cols=134  Identities=18%  Similarity=0.165  Sum_probs=100.2

Q ss_pred             EEeccCCCCCccCCCcc-----eEEeecCCccccch-hhhhhhccc----------cccCccCCCCCCCCEEEeeCCCCC
Q 015983            6 TLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSF-AIELLFRLV----------QEFPEKTSSKDQLLEIHLEGTAIR   69 (397)
Q Consensus         6 ~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~~~i~   69 (397)
                      ..+++++ .++.+|...     .|++++|.++.+|. .+..+++|+          ...|..+..+++|++|+|++|.|+
T Consensus        35 ~c~~~~~-~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  113 (353)
T 2z80_A           35 ICKGSSG-SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS  113 (353)
T ss_dssp             EEECCST-TCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             EeeCCCC-CcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence            4555554 566666432     27777777777765 455555554          233456788889999999999999


Q ss_pred             cCCcc-ccCCCCCCEEEecCCCCCCCCCh--hccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCcccc
Q 015983           70 GLPAS-IELLSGNVLLNLKDRKNLKSLPS--TINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus        70 ~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~--~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~~  141 (397)
                      .+|.. ++.+++|+.|++++ +.+..+|.  .+..+++|++|++++|..+..++ ..++.+++|+.|++++|.++.
T Consensus       114 ~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          114 NLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             cCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            88876 78899999999998 57888876  67888999999999876677764 567888889999998887665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.27  E-value=3.1e-11  Score=124.19  Aligned_cols=117  Identities=20%  Similarity=0.259  Sum_probs=69.3

Q ss_pred             CCcceEEeecCCccccch---hhhhhhccc---------cccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEe
Q 015983           19 PDIVQVLWDGTDIRELSF---AIELLFRLV---------QEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNL   86 (397)
Q Consensus        19 P~~~~L~Ls~n~l~~Lp~---si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~L   86 (397)
                      |.+..|+|++|.++.+|.   .+..+++|+         ..+|..+..+++|++|+|++|.++.+|..+.  ++|+.|+|
T Consensus       361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~L  438 (549)
T 2z81_A          361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDV  438 (549)
T ss_dssp             TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEEC
T ss_pred             ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc--CCceEEEC
Confidence            344445555555555442   233333333         3344444555555555555555555444332  34555555


Q ss_pred             cCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983           87 KDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        87 s~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      ++ +.+..++   ..+++|++|+|++| .+..+|.. ..+++|+.|++++|.++.++
T Consensus       439 s~-N~l~~~~---~~l~~L~~L~Ls~N-~l~~ip~~-~~l~~L~~L~Ls~N~l~~~~  489 (549)
T 2z81_A          439 SN-NNLDSFS---LFLPRLQELYISRN-KLKTLPDA-SLFPVLLVMKISRNQLKSVP  489 (549)
T ss_dssp             CS-SCCSCCC---CCCTTCCEEECCSS-CCSSCCCG-GGCTTCCEEECCSSCCCCCC
T ss_pred             CC-CChhhhc---ccCChhcEEECCCC-ccCcCCCc-ccCccCCEEecCCCccCCcC
Confidence            55 2444433   36789999999995 77889874 67889999999999887643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.27  E-value=1.9e-11  Score=117.54  Aligned_cols=125  Identities=10%  Similarity=0.095  Sum_probs=92.3

Q ss_pred             CCCcceEEeecCCcc-ccchhh--hhhhccc---------cccCccCCCC-----CCCCEEEeeCCCCCcCC-ccccCCC
Q 015983           18 FPDIVQVLWDGTDIR-ELSFAI--ELLFRLV---------QEFPEKTSSK-----DQLLEIHLEGTAIRGLP-ASIELLS   79 (397)
Q Consensus        18 lP~~~~L~Ls~n~l~-~Lp~si--~~L~~L~---------~~~P~~l~~l-----~~L~~L~Ls~~~i~~lP-~si~~L~   79 (397)
                      ++.+..|+|++|.++ .+|..+  ..+++|+         ..+|..++.+     ++|++|+|++|.|+.+| ..++.++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            566667999999998 677765  6666665         3335555555     88999999999999877 6789999


Q ss_pred             CCCEEEecCCCCCCC--CChhc--cCCCcCceeeeecccCCccCCc----ccCCCCCCcEEECCCCcccccc
Q 015983           80 GNVLLNLKDRKNLKS--LPSTI--NGLRCLRMLHLSGCSKLKNAPE----TLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        80 ~L~~L~Ls~c~~l~~--LP~~i--~~L~sL~~L~Ls~C~~L~~lP~----~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      +|+.|+|++|.....  +|..+  ..+++|++|++++| .+..+|.    .+..+++|+.|++++|.++...
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            999999998543332  34444  78899999999995 5664432    3356788999999999877643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.27  E-value=1.7e-11  Score=115.43  Aligned_cols=117  Identities=22%  Similarity=0.214  Sum_probs=86.1

Q ss_pred             EEeecCCccccch-hhhhhhccc---------cc-cCccCCCCCCCCEEEeeCCCCCcCC-ccccCCCCCCEEEecCCCC
Q 015983           24 VLWDGTDIRELSF-AIELLFRLV---------QE-FPEKTSSKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDRKN   91 (397)
Q Consensus        24 L~Ls~n~l~~Lp~-si~~L~~L~---------~~-~P~~l~~l~~L~~L~Ls~~~i~~lP-~si~~L~~L~~L~Ls~c~~   91 (397)
                      |+|++|.++.++. .+..+++|+         .. .+..+..+++|++|+|++|.++.++ ..+..+++|+.|++++ +.
T Consensus        33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~  111 (276)
T 2z62_A           33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE-TN  111 (276)
T ss_dssp             EECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-SC
T ss_pred             EECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC-CC
Confidence            5555555555543 344444433         11 2335678889999999999998776 5688899999999998 56


Q ss_pred             CCCCCh-hccCCCcCceeeeecccCCcc--CCcccCCCCCCcEEECCCCccccc
Q 015983           92 LKSLPS-TINGLRCLRMLHLSGCSKLKN--APETLGKVESLESAVETVTKFAKA  142 (397)
Q Consensus        92 l~~LP~-~i~~L~sL~~L~Ls~C~~L~~--lP~~~~~L~~L~~L~ls~n~~~~L  142 (397)
                      +..++. .+..+++|++|++++| .+..  +|..++.+++|+.|++++|.++.+
T Consensus       112 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          112 LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             ccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            777755 6888899999999985 5554  688888899999999999987764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.26  E-value=1.5e-11  Score=127.69  Aligned_cols=127  Identities=23%  Similarity=0.241  Sum_probs=100.8

Q ss_pred             CCccCCCc-----ceEEeecCCccccch-hhhhhhccc---------ccc-CccCCCCCCCCEEEeeCCCCCcCCc-ccc
Q 015983           14 KLKKFPDI-----VQVLWDGTDIRELSF-AIELLFRLV---------QEF-PEKTSSKDQLLEIHLEGTAIRGLPA-SIE   76 (397)
Q Consensus        14 ~L~~lP~~-----~~L~Ls~n~l~~Lp~-si~~L~~L~---------~~~-P~~l~~l~~L~~L~Ls~~~i~~lP~-si~   76 (397)
                      .|+.+|..     ..|+|++|.|+.+|+ +|.++++|+         ..+ |..+.++++|++|+|++|.|+.+|. .|.
T Consensus        42 ~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~  121 (635)
T 4g8a_A           42 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS  121 (635)
T ss_dssp             CCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred             CcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence            56677642     238888888888875 566677665         334 3457889999999999999999986 478


Q ss_pred             CCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCcc--CCcccCCCCCCcEEECCCCccccc
Q 015983           77 LLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKN--APETLGKVESLESAVETVTKFAKA  142 (397)
Q Consensus        77 ~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~--lP~~~~~L~~L~~L~ls~n~~~~L  142 (397)
                      .+++|+.|+|++ +.+..+|. .++++++|++|++++| .+..  +|..++.++.|+.|++++|.++.+
T Consensus       122 ~L~~L~~L~Ls~-N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          122 GLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             TCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCCCCCEEECCC-CcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcccccc
Confidence            999999999999 57888875 5889999999999995 4543  577788899999999999987653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.26  E-value=4.4e-11  Score=120.78  Aligned_cols=122  Identities=19%  Similarity=0.162  Sum_probs=76.0

Q ss_pred             EEeecCCccccc-hhhhhhhccc----------cccCccCCCCCCCCEEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCC
Q 015983           24 VLWDGTDIRELS-FAIELLFRLV----------QEFPEKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKN   91 (397)
Q Consensus        24 L~Ls~n~l~~Lp-~si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~   91 (397)
                      |+|++|.|+.++ ..+.++++|+          ...|..+..+++|++|+|++|.|+.+|.. +..+++|+.|+|++ +.
T Consensus        80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~  158 (452)
T 3zyi_A           80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN-NP  158 (452)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS-CC
T ss_pred             EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC-CC
Confidence            666666666553 3344444443          22334556677777777777777766654 66677777777776 45


Q ss_pred             CCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCccccccccc
Q 015983           92 LKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAKAELIA  146 (397)
Q Consensus        92 l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L~~l~  146 (397)
                      +..+|. .+.++++|+.|++++|+.++.+|. .+..+++|+.|++++|.++.++.+.
T Consensus       159 l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~  215 (452)
T 3zyi_A          159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLT  215 (452)
T ss_dssp             CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCT
T ss_pred             cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccccc
Confidence            666654 566677777777777666666664 4566677777777777666555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.25  E-value=3.2e-11  Score=125.69  Aligned_cols=135  Identities=19%  Similarity=0.143  Sum_probs=88.9

Q ss_pred             cEEeccCCCCCccCCCcc-----eEEeecCCccccch-hhhhhhccc----------cccCccCCCCCCCCEEEeeCCCC
Q 015983            5 KTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSF-AIELLFRLV----------QEFPEKTSSKDQLLEIHLEGTAI   68 (397)
Q Consensus         5 ~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~~~i   68 (397)
                      ++++.+++ .++.+|...     .|+|++|.++.++. .+.++++|+          ...|..+.++++|++|+|++|.+
T Consensus        14 ~~~~c~~~-~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l   92 (606)
T 3vq2_A           14 ITYQCMDQ-KLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI   92 (606)
T ss_dssp             TEEECTTS-CCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CceEccCC-CcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence            34555554 456665422     27777777776654 455555554          22355567777788888887777


Q ss_pred             CcC-CccccCCCCCCEEEecCCCCCCCCC-hhccCCCcCceeeeecccCCc-cCCcccCCCCCCcEEECCCCcccc
Q 015983           69 RGL-PASIELLSGNVLLNLKDRKNLKSLP-STINGLRCLRMLHLSGCSKLK-NAPETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus        69 ~~l-P~si~~L~~L~~L~Ls~c~~l~~LP-~~i~~L~sL~~L~Ls~C~~L~-~lP~~~~~L~~L~~L~ls~n~~~~  141 (397)
                      +.+ |..++.+++|+.|+|++ +.+..+| ..++++++|++|++++|.... .+|..++.+++|+.|++++|.++.
T Consensus        93 ~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A           93 QSFSPGSFSGLTSLENLVAVE-TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             CCCCTTSSTTCTTCCEEECTT-SCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             cccChhhcCCcccCCEEEccC-CccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence            766 66677778888888877 4566655 567777788888887753322 467777777778888877776654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.25  E-value=4.7e-11  Score=121.36  Aligned_cols=131  Identities=12%  Similarity=0.155  Sum_probs=93.4

Q ss_pred             CCCCcEEeccCCCCCccCCCc------ceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983            1 MKSLKTLVLSGCLKLKKFPDI------VQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG   65 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP~~------~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~   65 (397)
                      |++|+.|+|++| .++.+|.+      ..|+|++|.++.+|  ++.+++|+         ..+|  ++.+++|++|+|++
T Consensus        41 l~~L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           41 LATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT  115 (457)
T ss_dssp             HTTCCEEECCSS-CCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred             cCCCCEEEccCC-CcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence            367888999887 45555543      33888888888876  55666554         3333  67788888888888


Q ss_pred             CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983           66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      |.++.+|  ++.+++|+.|++++ +.+..+|  ++.+++|++|++++|..++.++  ++.+++|+.|++++|.++.++
T Consensus       116 N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~l~  186 (457)
T 3bz5_A          116 NKLTKLD--VSQNPLLTYLNCAR-NTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELD  186 (457)
T ss_dssp             SCCSCCC--CTTCTTCCEEECTT-SCCSCCC--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCCCC
T ss_pred             CcCCeec--CCCCCcCCEEECCC-Cccceec--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccceec
Confidence            8888876  77888888888887 5677665  6677777777777776666663  566677777777777666544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.25  E-value=9.9e-12  Score=133.53  Aligned_cols=92  Identities=23%  Similarity=0.286  Sum_probs=81.0

Q ss_pred             cCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCC
Q 015983           48 FPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVE  127 (397)
Q Consensus        48 ~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~  127 (397)
                      +|..+..+++|++|+|++|.|+.+|..|+.|++|+.|+|++ |.+..+|..++.|++|++|+|++| .+..+|..++.|+
T Consensus       239 l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~  316 (727)
T 4b8c_D          239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLC  316 (727)
T ss_dssp             CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCT
T ss_pred             CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCccChhhcCCCCCCEEECCCC-CCCccChhhhcCC
Confidence            33334567889999999999999999999999999999998 678899999999999999999995 7889999899999


Q ss_pred             CCcEEECCCCcccc
Q 015983          128 SLESAVETVTKFAK  141 (397)
Q Consensus       128 ~L~~L~ls~n~~~~  141 (397)
                      +|+.|++++|.++.
T Consensus       317 ~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          317 NLQFLGVEGNPLEK  330 (727)
T ss_dssp             TCCCEECTTSCCCS
T ss_pred             CccEEeCCCCccCC
Confidence            99999999998874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.25  E-value=2.2e-11  Score=118.78  Aligned_cols=85  Identities=21%  Similarity=0.201  Sum_probs=43.5

Q ss_pred             cCCCCCCCCEEEeeCCCCCcCC-ccccCCCCCCEEEecCCCCCCCCChh-ccCCCcCceeeeecccCCccCCc--ccCCC
Q 015983           51 KTSSKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDRKNLKSLPST-INGLRCLRMLHLSGCSKLKNAPE--TLGKV  126 (397)
Q Consensus        51 ~l~~l~~L~~L~Ls~~~i~~lP-~si~~L~~L~~L~Ls~c~~l~~LP~~-i~~L~sL~~L~Ls~C~~L~~lP~--~~~~L  126 (397)
                      .+..+++|++|+|++|.++.++ ..+..+++|+.|+|++ +.+..+|.. +.++++|++|++++| .+..+|.  .+..+
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l  148 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHL  148 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTC
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccC
Confidence            3455555555555555555443 3355555555555555 345555443 455555555555552 4444444  34555


Q ss_pred             CCCcEEECCCC
Q 015983          127 ESLESAVETVT  137 (397)
Q Consensus       127 ~~L~~L~ls~n  137 (397)
                      ++|+.|++++|
T Consensus       149 ~~L~~L~l~~n  159 (353)
T 2z80_A          149 TKLQILRVGNM  159 (353)
T ss_dssp             TTCCEEEEEES
T ss_pred             CCCcEEECCCC
Confidence            55555555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.25  E-value=5.5e-11  Score=114.74  Aligned_cols=138  Identities=19%  Similarity=0.243  Sum_probs=104.5

Q ss_pred             CCCCcEEeccCCCCCccCCCc-----ceEEeecCCccccchh-hhhhhccc------------cccCccCCCCCCCCEEE
Q 015983            1 MKSLKTLVLSGCLKLKKFPDI-----VQVLWDGTDIRELSFA-IELLFRLV------------QEFPEKTSSKDQLLEIH   62 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP~~-----~~L~Ls~n~l~~Lp~s-i~~L~~L~------------~~~P~~l~~l~~L~~L~   62 (397)
                      |++|++|+|++| .++.+|..     ..|++++|.++.++.. +..+++|+            ...|..+..+++|++|+
T Consensus        99 l~~L~~L~Ls~n-~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  177 (330)
T 1xku_A           99 LVKLERLYLSKN-QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR  177 (330)
T ss_dssp             CTTCCEEECCSS-CCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred             CCCCCEEECCCC-cCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence            578999999998 56777643     3399999999988764 56666665            14456677888999999


Q ss_pred             eeCCCCCcCCccccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCccc
Q 015983           63 LEGTAIRGLPASIELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFA  140 (397)
Q Consensus        63 Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~  140 (397)
                      +++|.++.+|..+.  ++|+.|++++ +.+..+ |..+..+++|++|++++| .+..++ ..+..+++|+.|++++|.++
T Consensus       178 l~~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          178 IADTNITTIPQGLP--PSLTELHLDG-NKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             CCSSCCCSCCSSCC--TTCSEEECTT-SCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             CCCCccccCCcccc--ccCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCc
Confidence            99999988887664  7888888888 456655 567888888888888885 455544 46777888888888888777


Q ss_pred             ccc
Q 015983          141 KAE  143 (397)
Q Consensus       141 ~L~  143 (397)
                      .++
T Consensus       254 ~lp  256 (330)
T 1xku_A          254 KVP  256 (330)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.25  E-value=4.4e-11  Score=120.35  Aligned_cols=93  Identities=19%  Similarity=0.245  Sum_probs=52.6

Q ss_pred             cCCCCCCCCEEEeeCCCCCcCCc-cccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCC
Q 015983           51 KTSSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVE  127 (397)
Q Consensus        51 ~l~~l~~L~~L~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~  127 (397)
                      .+..+++|++|+|++|.|+.+|. .+..+++|+.|+|++ +.+..+|. .+.++++|++|++++|+.+..+|. .+..++
T Consensus       107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~  185 (440)
T 3zyj_A          107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS  185 (440)
T ss_dssp             GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred             hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence            34555666666666666665554 355566666666665 34555543 455556666666666555555543 355555


Q ss_pred             CCcEEECCCCccccccc
Q 015983          128 SLESAVETVTKFAKAEL  144 (397)
Q Consensus       128 ~L~~L~ls~n~~~~L~~  144 (397)
                      +|+.|++++|.++.++.
T Consensus       186 ~L~~L~L~~n~l~~~~~  202 (440)
T 3zyj_A          186 NLRYLNLAMCNLREIPN  202 (440)
T ss_dssp             SCCEEECTTSCCSSCCC
T ss_pred             ccCeecCCCCcCccccc
Confidence            66666666665555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.24  E-value=4.8e-11  Score=115.64  Aligned_cols=138  Identities=20%  Similarity=0.321  Sum_probs=88.5

Q ss_pred             CCCCcEEeccCCCCCccCC------CcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983            1 MKSLKTLVLSGCLKLKKFP------DIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG   65 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP------~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~   65 (397)
                      +++|+.|++++| .+..+|      .+..|++++|.++.+|. +..+++|+         ..+| .+..+++|++|+|++
T Consensus        43 l~~L~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~  119 (347)
T 4fmz_A           43 LESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNE  119 (347)
T ss_dssp             HTTCSEEECCSS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTT
T ss_pred             cccccEEEEeCC-ccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcC
Confidence            367899999997 444444      44449999999998876 65555544         2232 356666777777777


Q ss_pred             CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccccc
Q 015983           66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELI  145 (397)
Q Consensus        66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l  145 (397)
                      |.++.+|. +..+++|+.|++++|..+..++. +..+++|++|++++| .+..++. +..+++|+.|++++|.+..++.+
T Consensus       120 n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~  195 (347)
T 4fmz_A          120 DNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLNYNQIEDISPL  195 (347)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECTTSCCCCCGGG
T ss_pred             CcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCchh-hccCCCCCEEEccCCcccccccc
Confidence            77766665 66667777777776555554444 666677777777764 3444443 55666677777777666554443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.24  E-value=1e-11  Score=119.23  Aligned_cols=140  Identities=16%  Similarity=0.073  Sum_probs=99.8

Q ss_pred             CCCcEEeccCCCCCccCCCc---------ceEEeecCCcccc-c----hhhhhhhccc----------cccCccCCCCCC
Q 015983            2 KSLKTLVLSGCLKLKKFPDI---------VQVLWDGTDIREL-S----FAIELLFRLV----------QEFPEKTSSKDQ   57 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP~~---------~~L~Ls~n~l~~L-p----~si~~L~~L~----------~~~P~~l~~l~~   57 (397)
                      ++|+.|+|++|...+..|..         ..|+|++|.++.. +    ..+..+++|+          ...|..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            46899999998654444433         2389999988852 2    1223344443          344567788999


Q ss_pred             CCEEEeeCCCCCc---CC--ccccCCCCCCEEEecCCCCCCCCChh----ccCCCcCceeeeecccCCccC-CcccCCC-
Q 015983           58 LLEIHLEGTAIRG---LP--ASIELLSGNVLLNLKDRKNLKSLPST----INGLRCLRMLHLSGCSKLKNA-PETLGKV-  126 (397)
Q Consensus        58 L~~L~Ls~~~i~~---lP--~si~~L~~L~~L~Ls~c~~l~~LP~~----i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L-  126 (397)
                      |++|+|++|.+..   ++  ..++.+++|+.|+|++ +.+..+|..    +..+++|++|+|++|. +..+ |..++.+ 
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~  248 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN-TGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCM  248 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS-SCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC-CCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhcc
Confidence            9999999998763   43  2347888999999998 577777652    5677999999999964 5544 7766666 


Q ss_pred             --CCCcEEECCCCcccccc
Q 015983          127 --ESLESAVETVTKFAKAE  143 (397)
Q Consensus       127 --~~L~~L~ls~n~~~~L~  143 (397)
                        ++|+.|++++|.++.++
T Consensus       249 ~~~~L~~L~Ls~N~l~~lp  267 (310)
T 4glp_A          249 WSSALNSLNLSFAGLEQVP  267 (310)
T ss_dssp             CCTTCCCEECCSSCCCSCC
T ss_pred             CcCcCCEEECCCCCCCchh
Confidence              68999999999887654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.24  E-value=5.1e-11  Score=117.69  Aligned_cols=46  Identities=17%  Similarity=0.057  Sum_probs=36.7

Q ss_pred             ccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccc
Q 015983           99 INGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAEL  144 (397)
Q Consensus        99 i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~  144 (397)
                      +..+++|++|++++|......|..+..+++|+.|++++|.++.++.
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  289 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL  289 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC
T ss_pred             HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc
Confidence            5667889999999965444457888999999999999998877543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.24  E-value=3.4e-11  Score=113.28  Aligned_cols=139  Identities=22%  Similarity=0.187  Sum_probs=107.1

Q ss_pred             CCCcEEeccCCCCCcc--------CCCcceEEeecCCccccch-hhhhhhccc----------cccCccCCCCCCCCEEE
Q 015983            2 KSLKTLVLSGCLKLKK--------FPDIVQVLWDGTDIRELSF-AIELLFRLV----------QEFPEKTSSKDQLLEIH   62 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~--------lP~~~~L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~~l~~l~~L~~L~   62 (397)
                      ++|++|+|++|. ++.        +|.+..|+|++|.++.++. .+..+++|+          ...|..+..+++|++|+
T Consensus        28 ~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            368999999983 433        3445559999999998876 566666665          33446788999999999


Q ss_pred             eeCCCCCcCCc-cccCCCCCCEEEecCCCCCCC--CChhccCCCcCceeeeecccCCccCC-cccCCCCCCc----EEEC
Q 015983           63 LEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKS--LPSTINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLE----SAVE  134 (397)
Q Consensus        63 Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~--LP~~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~----~L~l  134 (397)
                      +++|.++.++. .++.+++|+.|++++ +.+..  +|..+..+++|++|++++| .+..+| ..+..+..|+    .|++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred             CCCCCccccCchhcccCCCCCEEECcC-CccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeec
Confidence            99999998876 689999999999998 56766  6889999999999999995 566654 4455444454    7899


Q ss_pred             CCCcccccc
Q 015983          135 TVTKFAKAE  143 (397)
Q Consensus       135 s~n~~~~L~  143 (397)
                      ++|.++.++
T Consensus       185 s~n~l~~~~  193 (276)
T 2z62_A          185 SLNPMNFIQ  193 (276)
T ss_dssp             CSSCCCEEC
T ss_pred             CCCcccccC
Confidence            999876543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.23  E-value=5.6e-11  Score=115.13  Aligned_cols=134  Identities=16%  Similarity=0.281  Sum_probs=94.4

Q ss_pred             CCCCcEEeccCCCC-----CccCCCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCC
Q 015983            1 MKSLKTLVLSGCLK-----LKKFPDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGT   66 (397)
Q Consensus         1 L~sL~~L~LsgC~~-----L~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~   66 (397)
                      +++|+.|++++|..     +..+|.+..|++++|.++.++. +..+++|.         ..++. +..+++|++|+|++|
T Consensus       154 l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          154 MTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNN  231 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred             CCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCC
Confidence            46788999988842     2334555558888888888776 55555554         22222 566778888888888


Q ss_pred             CCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983           67 AIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus        67 ~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~  141 (397)
                      .++.+|. +..+++|+.|++++ +.+..++ .+..+++|++|++++| .+..+| .+..+++|+.|++++|.++.
T Consensus       232 ~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~  301 (347)
T 4fmz_A          232 KITDLSP-LANLSQLTWLEIGT-NQISDIN-AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGN  301 (347)
T ss_dssp             CCCCCGG-GTTCTTCCEEECCS-SCCCCCG-GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCG
T ss_pred             ccCCCcc-hhcCCCCCEEECCC-CccCCCh-hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCC
Confidence            8887776 77788888888887 4676665 3677788888888875 566664 35677778888888877654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.23  E-value=1.7e-11  Score=118.08  Aligned_cols=137  Identities=15%  Similarity=0.114  Sum_probs=59.2

Q ss_pred             CCCCcEEeccCCCCCccC---CCcceEEeecCCccccchhh-hhhhccc-------cccCccCCCCCCCCEEEeeCCCCC
Q 015983            1 MKSLKTLVLSGCLKLKKF---PDIVQVLWDGTDIRELSFAI-ELLFRLV-------QEFPEKTSSKDQLLEIHLEGTAIR   69 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~l---P~~~~L~Ls~n~l~~Lp~si-~~L~~L~-------~~~P~~l~~l~~L~~L~Ls~~~i~   69 (397)
                      +++|++|+|++| .++.+   |.+..|++++|.++.++... .+|+.|.       ...|..+..+++|++|+|++|.++
T Consensus        79 l~~L~~L~Ls~n-~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           79 LSTLRTLDLNNN-YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             CTTCCEEECCSS-EEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred             cCCCCEEECcCC-ccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence            356677777766 23332   23333555555554433221 1122221       111223344445555555555554


Q ss_pred             cCC-ccc-cCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983           70 GLP-ASI-ELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus        70 ~lP-~si-~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~  141 (397)
                      .++ ..+ ..+++|+.|+|++ +.+..+|.. ..+++|++|++++ +.+..+|..+..+++|+.|++++|.++.
T Consensus       158 ~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          158 TVNFAELAASSDTLEHLNLQY-NFIYDVKGQ-VVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             EEEGGGGGGGTTTCCEEECTT-SCCCEEECC-CCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred             cccHHHHhhccCcCCEEECCC-CcCcccccc-cccccCCEEECCC-CcCCcchhhhcccCcccEEECcCCcccc
Confidence            432 222 2344555555554 344444332 2244555555554 2344444444444455555555554443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.23  E-value=4.4e-11  Score=125.27  Aligned_cols=142  Identities=14%  Similarity=0.141  Sum_probs=88.0

Q ss_pred             CCCCcEEeccCCCCCccCC--------CcceEEeecCCccccchh-hhhhhccc---------cccCcc-CCCCCCCCEE
Q 015983            1 MKSLKTLVLSGCLKLKKFP--------DIVQVLWDGTDIRELSFA-IELLFRLV---------QEFPEK-TSSKDQLLEI   61 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP--------~~~~L~Ls~n~l~~Lp~s-i~~L~~L~---------~~~P~~-l~~l~~L~~L   61 (397)
                      +++|+.|+|++|. +..+|        .+..|+|++|.++.+|+. ++.+++|.         ..+|.. ++.+++|++|
T Consensus        74 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           74 FRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             CCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence            3566777777663 33222        233366666666666543 34555544         333433 3566666666


Q ss_pred             EeeCCCCCcCCc-cccCCCCCCEEEecCCCCCCCC---------------------------------------------
Q 015983           62 HLEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKSL---------------------------------------------   95 (397)
Q Consensus        62 ~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~L---------------------------------------------   95 (397)
                      +|++|.++.++. .++.+++|+.|+|++| .+..+                                             
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~  231 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN  231 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence            666666665543 4566666666666652 33322                                             


Q ss_pred             ---------------ChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccc
Q 015983           96 ---------------PSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAEL  144 (397)
Q Consensus        96 ---------------P~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~  144 (397)
                                     +..+..+++|+.|+|++|......|..++.+++|+.|++++|.++.++.
T Consensus       232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~  295 (597)
T 3oja_B          232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL  295 (597)
T ss_dssp             SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC
T ss_pred             CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc
Confidence                           1235677889999999965555568888999999999999998877543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.23  E-value=5.8e-11  Score=121.54  Aligned_cols=140  Identities=14%  Similarity=0.188  Sum_probs=104.8

Q ss_pred             CCCcEEeccCCCCC-----ccCCCcceEEeecCCccc-cchhhhhhhccc---------c---ccCccCCCCCCCCEEEe
Q 015983            2 KSLKTLVLSGCLKL-----KKFPDIVQVLWDGTDIRE-LSFAIELLFRLV---------Q---EFPEKTSSKDQLLEIHL   63 (397)
Q Consensus         2 ~sL~~L~LsgC~~L-----~~lP~~~~L~Ls~n~l~~-Lp~si~~L~~L~---------~---~~P~~l~~l~~L~~L~L   63 (397)
                      .+|+.|++++|...     ..+|.+..|++++|.++. +|..+..+++|+         .   .+|..++.+++|++|+|
T Consensus       302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L  381 (520)
T 2z7x_B          302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI  381 (520)
T ss_dssp             CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred             CceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence            35888888887432     234455558888888886 677777666665         2   45566788899999999


Q ss_pred             eCCCCCc-CCcc-ccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983           64 EGTAIRG-LPAS-IELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus        64 s~~~i~~-lP~s-i~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~  141 (397)
                      ++|.++. +|.. +..+++|+.|++++|.....+|..+.  ++|++|++++| .+..+|..+..+++|+.|++++|.++.
T Consensus       382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~  458 (520)
T 2z7x_B          382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLKS  458 (520)
T ss_dssp             CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCCc
Confidence            9999987 8875 77888999999998543345565442  68999999985 677888877788999999999998876


Q ss_pred             ccc
Q 015983          142 AEL  144 (397)
Q Consensus       142 L~~  144 (397)
                      ++.
T Consensus       459 l~~  461 (520)
T 2z7x_B          459 VPD  461 (520)
T ss_dssp             CCT
T ss_pred             cCH
Confidence            553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.23  E-value=1.1e-10  Score=102.51  Aligned_cols=122  Identities=20%  Similarity=0.330  Sum_probs=96.0

Q ss_pred             CcEEeccCCCCCccCCCc-----ceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc-ccC
Q 015983            4 LKTLVLSGCLKLKKFPDI-----VQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS-IEL   77 (397)
Q Consensus         4 L~~L~LsgC~~L~~lP~~-----~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s-i~~   77 (397)
                      .+.++++++ .++.+|..     ..|++++|.++.+|...             +..+++|++|+|++|.|+.+|.. +..
T Consensus         9 ~~~l~~~~~-~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~~~   74 (177)
T 2o6r_A            9 GTEIRCNSK-GLTSVPTGIPSSATRLELESNKLQSLPHGV-------------FDKLTQLTKLSLSQNQIQSLPDGVFDK   74 (177)
T ss_dssp             TTEEECCSS-CCSSCCTTCCTTCSEEECCSSCCCCCCTTT-------------TTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CCEEEecCC-CCccCCCCCCCCCcEEEeCCCcccEeCHHH-------------hcCcccccEEECCCCcceEeChhHccC
Confidence            456788776 56666643     23888888888776532             46788899999999999988865 688


Q ss_pred             CCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCcc-cCCCCCCcEEECCCCcccc
Q 015983           78 LSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPET-LGKVESLESAVETVTKFAK  141 (397)
Q Consensus        78 L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~~-~~~L~~L~~L~ls~n~~~~  141 (397)
                      +++|+.|+|++ +.+..+|. .+..+++|++|++++| .+..+|.. +..+++|+.|++++|.+..
T Consensus        75 l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           75 LTKLTILYLHE-NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccCEEECCC-CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence            99999999998 67888876 4678999999999995 67777764 5778999999999997653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.23  E-value=3.5e-11  Score=126.71  Aligned_cols=134  Identities=19%  Similarity=0.274  Sum_probs=110.3

Q ss_pred             CCCCcEEeccCCCCCccC------CCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983            1 MKSLKTLVLSGCLKLKKF------PDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG   65 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~l------P~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~   65 (397)
                      |++|+.|+|++|. +..+      +.+..|+|++|.|+.+| .+..|++|+         ..+ +.+..|++|+.|+|++
T Consensus        64 l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~  140 (605)
T 1m9s_A           64 LPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGN  140 (605)
T ss_dssp             CTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCS
T ss_pred             CCCCCEEEeeCCC-CCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCC
Confidence            5789999999984 4444      44555999999999877 566666665         333 3467899999999999


Q ss_pred             CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccc
Q 015983           66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKA  142 (397)
Q Consensus        66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L  142 (397)
                      |.|+.+ ..+..+++|+.|+|++ +.+..++. +..+++|+.|+|++| .+..+| .+..+++|+.|++++|.+...
T Consensus       141 N~l~~l-~~l~~l~~L~~L~Ls~-N~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          141 NKITDI-TVLSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             SCCCCC-GGGGSCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred             CccCCc-hhhcccCCCCEEECcC-CcCCCchh-hccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCcCcCC
Confidence            999988 6789999999999999 57888866 899999999999995 777776 478899999999999988764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.22  E-value=3.7e-11  Score=118.72  Aligned_cols=117  Identities=14%  Similarity=0.073  Sum_probs=88.1

Q ss_pred             EEeecCCccccchhh-hhhhccc------cccCccCCCCCCCCEEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCC
Q 015983           24 VLWDGTDIRELSFAI-ELLFRLV------QEFPEKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSL   95 (397)
Q Consensus        24 L~Ls~n~l~~Lp~si-~~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~L   95 (397)
                      |++++|.+..+|..+ .+|+.|.      .. +..+..+++|++|+|++|.++.+ |..+..+++|+.|+|++ +.+..+
T Consensus       210 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~  287 (390)
T 3o6n_A          210 LDASHNSINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVAL  287 (390)
T ss_dssp             EECCSSCCCEEECCCCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS-SCCCEE
T ss_pred             EECCCCeeeeccccccccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC-CcCccc
Confidence            555555555554332 1233332      11 23466788999999999999865 67788999999999998 678888


Q ss_pred             ChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983           96 PSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        96 P~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      |..+..+++|++|++++| .+..+|..++.+++|+.|++++|.++.++
T Consensus       288 ~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i~~~~  334 (390)
T 3o6n_A          288 NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLK  334 (390)
T ss_dssp             ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             CcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCccceeC
Confidence            887888899999999995 77788887888889999999999887654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.21  E-value=5.9e-11  Score=119.17  Aligned_cols=95  Identities=17%  Similarity=0.128  Sum_probs=68.5

Q ss_pred             cCccCCCCCCCCEEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccCCcccCC
Q 015983           48 FPEKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNAPETLGK  125 (397)
Q Consensus        48 ~P~~l~~l~~L~~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~  125 (397)
                      .|..++.+++|++|+|++|.++.+ |..++.+++|+.|+|++ +.+..+ |..+..+++|++|+|++|......|..+..
T Consensus       291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  369 (455)
T 3v47_A          291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG  369 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCC-CccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence            455567778888888888888766 44677888888888887 455555 556777888888888885433334667777


Q ss_pred             CCCCcEEECCCCcccccc
Q 015983          126 VESLESAVETVTKFAKAE  143 (397)
Q Consensus       126 L~~L~~L~ls~n~~~~L~  143 (397)
                      +++|+.|++++|.++.++
T Consensus       370 l~~L~~L~L~~N~l~~~~  387 (455)
T 3v47_A          370 LPNLKELALDTNQLKSVP  387 (455)
T ss_dssp             CTTCCEEECCSSCCSCCC
T ss_pred             cccccEEECCCCccccCC
Confidence            888888888888776644

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.21  E-value=4.7e-11  Score=124.83  Aligned_cols=127  Identities=17%  Similarity=0.185  Sum_probs=97.8

Q ss_pred             CCCcEEeccCCCCCccCCCc----ceEEeecCCccccchhhh-hhhccc------cccCccCCCCCCCCEEEeeCCCCCc
Q 015983            2 KSLKTLVLSGCLKLKKFPDI----VQVLWDGTDIRELSFAIE-LLFRLV------QEFPEKTSSKDQLLEIHLEGTAIRG   70 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP~~----~~L~Ls~n~l~~Lp~si~-~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~~   70 (397)
                      ++|+.|+|++| .++.+|..    ..|+|++|.|+.+|. +. +|+.|.      ..+|.   .+++|+.|+|++|.|+.
T Consensus        80 ~~L~~L~Ls~N-~l~~ip~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A           80 PQITVLEITQN-ALISLPELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM  154 (571)
T ss_dssp             TTCSEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC
T ss_pred             CCCCEEECcCC-CCcccccccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc
Confidence            56899999998 56677732    239999999998888 64 444443      34666   67889999999999999


Q ss_pred             CCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCC-------cEEECCCCcccccc
Q 015983           71 LPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESL-------ESAVETVTKFAKAE  143 (397)
Q Consensus        71 lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L-------~~L~ls~n~~~~L~  143 (397)
                      +|.   .+++|+.|+|++ |.+..+|. +.  ++|++|+|++| .+..+|. +..  +|       +.|++++|.++.++
T Consensus       155 lp~---~l~~L~~L~Ls~-N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp  223 (571)
T 3cvr_A          155 LPE---LPTSLEVLSVRN-NQLTFLPE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRENRITHIP  223 (571)
T ss_dssp             CCC---CCTTCCEEECCS-SCCSCCCC-CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSSCCCCCC
T ss_pred             CCC---cCCCcCEEECCC-CCCCCcch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCCcceecC
Confidence            887   578999999998 57888988 65  89999999984 7788888 554  67       89999999888765


Q ss_pred             c
Q 015983          144 L  144 (397)
Q Consensus       144 ~  144 (397)
                      .
T Consensus       224 ~  224 (571)
T 3cvr_A          224 E  224 (571)
T ss_dssp             G
T ss_pred             H
Confidence            4

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.21  E-value=1.1e-11  Score=105.78  Aligned_cols=88  Identities=23%  Similarity=0.234  Sum_probs=64.1

Q ss_pred             CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCC-CChhccCCCcCceeeeecccCCccCC--cccCCCCCC
Q 015983           53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKS-LPSTINGLRCLRMLHLSGCSKLKNAP--ETLGKVESL  129 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~-LP~~i~~L~sL~~L~Ls~C~~L~~lP--~~~~~L~~L  129 (397)
                      ..+++|++|+|++|.++.+ ..++.+++|+.|++++ +.+.. +|..+..+++|++|++++| .+..+|  ..++.+++|
T Consensus        39 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L  115 (149)
T 2je0_A           39 DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD-NRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENL  115 (149)
T ss_dssp             TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCS-SCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTC
T ss_pred             hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCC-CcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCC
Confidence            5667788888888877777 6677778888888887 45655 6776666788888888874 466654  567777788


Q ss_pred             cEEECCCCcccccc
Q 015983          130 ESAVETVTKFAKAE  143 (397)
Q Consensus       130 ~~L~ls~n~~~~L~  143 (397)
                      +.|++++|.++.++
T Consensus       116 ~~L~l~~N~l~~~~  129 (149)
T 2je0_A          116 KSLDLFNCEVTNLN  129 (149)
T ss_dssp             CEEECTTCGGGGST
T ss_pred             CEEeCcCCcccchH
Confidence            88888888776654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.20  E-value=2.1e-11  Score=116.96  Aligned_cols=144  Identities=14%  Similarity=0.086  Sum_probs=108.7

Q ss_pred             CCCCcEEeccCCCCCcc-----------CCCcceEEeecCCccccch-hhhhhhccc------cc------cC--ccCCC
Q 015983            1 MKSLKTLVLSGCLKLKK-----------FPDIVQVLWDGTDIRELSF-AIELLFRLV------QE------FP--EKTSS   54 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~-----------lP~~~~L~Ls~n~l~~Lp~-si~~L~~L~------~~------~P--~~l~~   54 (397)
                      +++|++|+|++|.....           +|.+..|+|++|.+..++. .+..+++|+      ..      ++  ..++.
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  195 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK  195 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence            46789999999854332           4556669999999987764 555666655      11      32  22368


Q ss_pred             CCCCCEEEeeCCCCCcCCcc----ccCCCCCCEEEecCCCCCCCC-ChhccCC---CcCceeeeecccCCccCCcccCCC
Q 015983           55 KDQLLEIHLEGTAIRGLPAS----IELLSGNVLLNLKDRKNLKSL-PSTINGL---RCLRMLHLSGCSKLKNAPETLGKV  126 (397)
Q Consensus        55 l~~L~~L~Ls~~~i~~lP~s----i~~L~~L~~L~Ls~c~~l~~L-P~~i~~L---~sL~~L~Ls~C~~L~~lP~~~~~L  126 (397)
                      +++|++|+|++|.++.+|..    ++.+++|+.|+|++ |.+..+ |..+..+   ++|++|+|++ +.+..+|..+.  
T Consensus       196 l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--  271 (310)
T 4glp_A          196 FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH-NSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLP--  271 (310)
T ss_dssp             SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT-SCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCC--
T ss_pred             CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC-CCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhc--
Confidence            89999999999999877653    57889999999999 567766 8777766   6999999999 47779988764  


Q ss_pred             CCCcEEECCCCccccccccccC
Q 015983          127 ESLESAVETVTKFAKAELIAQK  148 (397)
Q Consensus       127 ~~L~~L~ls~n~~~~L~~l~~l  148 (397)
                      ++|+.|++++|.++.++.+..+
T Consensus       272 ~~L~~L~Ls~N~l~~~~~~~~l  293 (310)
T 4glp_A          272 AKLRVLDLSSNRLNRAPQPDEL  293 (310)
T ss_dssp             SCCSCEECCSCCCCSCCCTTSC
T ss_pred             CCCCEEECCCCcCCCCchhhhC
Confidence            7899999999998877654433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.20  E-value=5.7e-11  Score=109.44  Aligned_cols=130  Identities=12%  Similarity=0.211  Sum_probs=105.9

Q ss_pred             CCCCccCCC----cceEEeecCCccccch-hhhhhhccc----------cccCc-cCCCCCCCCEEEeeC-CCCCcCCc-
Q 015983           12 CLKLKKFPD----IVQVLWDGTDIRELSF-AIELLFRLV----------QEFPE-KTSSKDQLLEIHLEG-TAIRGLPA-   73 (397)
Q Consensus        12 C~~L~~lP~----~~~L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~-~l~~l~~L~~L~Ls~-~~i~~lP~-   73 (397)
                      |..++.+|.    +..|+|++|.++.+|. .+..+++|+          ..+|. .+..+++|++|+|++ |.++.+|. 
T Consensus        20 c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           20 CKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             ECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             ccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            445778876    2229999999999987 566666665          22443 567899999999999 99999885 


Q ss_pred             cccCCCCCCEEEecCCCCCCCCChhccCCCcCc---eeeeecccCCccCCc-ccCCCCCCc-EEECCCCcccccc
Q 015983           74 SIELLSGNVLLNLKDRKNLKSLPSTINGLRCLR---MLHLSGCSKLKNAPE-TLGKVESLE-SAVETVTKFAKAE  143 (397)
Q Consensus        74 si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~---~L~Ls~C~~L~~lP~-~~~~L~~L~-~L~ls~n~~~~L~  143 (397)
                      .+..+++|+.|++++ +.+..+|. +..+++|+   +|++++|..+..+|. .+..+++|+ .|++++|.++.++
T Consensus       100 ~f~~l~~L~~L~l~~-n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~  172 (239)
T 2xwt_C          100 ALKELPLLKFLGIFN-TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ  172 (239)
T ss_dssp             SEECCTTCCEEEEEE-ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred             HhCCCCCCCEEeCCC-CCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence            688999999999999 67888998 88888888   999999758888875 488899999 9999999887654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.20  E-value=6.8e-11  Score=108.21  Aligned_cols=123  Identities=22%  Similarity=0.306  Sum_probs=85.6

Q ss_pred             CCCcEEeccCCCCCccCC--------CcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc
Q 015983            2 KSLKTLVLSGCLKLKKFP--------DIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA   73 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP--------~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~   73 (397)
                      ++|+.|+|++| .++.+|        .+..|+|++|.|+.+++             ..+..+++|++|+|++|.|+.+|.
T Consensus        32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-------------~~~~~l~~L~~L~Ls~N~l~~l~~   97 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAP-------------DAFQGLRSLNSLVLYGNKITELPK   97 (220)
T ss_dssp             TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECT-------------TTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-------------HHhhCCcCCCEEECCCCcCCccCH
Confidence            36788888887 343333        33347888887776532             234667778888888888888876


Q ss_pred             c-ccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCccc
Q 015983           74 S-IELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFA  140 (397)
Q Consensus        74 s-i~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~  140 (397)
                      . +..+++|+.|+|++ +.+..+ |..+..+++|++|+|++| .+..+|. .+..+++|+.|++++|++.
T Consensus        98 ~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           98 SLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             hHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            5 57788888888887 566666 456777888888888884 5666553 4777788888888887653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.20  E-value=8.7e-11  Score=119.00  Aligned_cols=111  Identities=15%  Similarity=0.177  Sum_probs=62.3

Q ss_pred             CCCCcEEeccCCCC-------CccCCCcceEEeecCCccccchh-hhhhhccc----------cccCccCCCCCCCCEEE
Q 015983            1 MKSLKTLVLSGCLK-------LKKFPDIVQVLWDGTDIRELSFA-IELLFRLV----------QEFPEKTSSKDQLLEIH   62 (397)
Q Consensus         1 L~sL~~L~LsgC~~-------L~~lP~~~~L~Ls~n~l~~Lp~s-i~~L~~L~----------~~~P~~l~~l~~L~~L~   62 (397)
                      +++|++|+|++|..       +..++.+..|+|++|.++.+|.. +..+++|+          ...|..+..+++|++|+
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  134 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE  134 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence            45677777777632       12233444477777777777654 34555544          22344556666666666


Q ss_pred             eeCCCCCcCC-ccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeec
Q 015983           63 LEGTAIRGLP-ASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSG  112 (397)
Q Consensus        63 Ls~~~i~~lP-~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~  112 (397)
                      |++|.++.++ ..+..+++|+.|+|++ +.+..+|. .+..+++|+.|++++
T Consensus       135 l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~  185 (477)
T 2id5_A          135 VGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLHGLIVLRLRH  185 (477)
T ss_dssp             ECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHHHHTTCTTCCEEEEES
T ss_pred             CCCCccceeChhhccCCCCCCEEECCC-CcCcccChhHhcccCCCcEEeCCC
Confidence            6666666443 3456666666666665 34555543 344455555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.20  E-value=5.2e-11  Score=124.46  Aligned_cols=104  Identities=17%  Similarity=0.202  Sum_probs=90.1

Q ss_pred             ceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccC
Q 015983           22 VQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTING  101 (397)
Q Consensus        22 ~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~  101 (397)
                      ..|+|++|.|+.+|. +              +.|++|+.|+|++|.|+.+|..++.+++|+.|+|++ |.+..+| .++.
T Consensus       444 ~~L~Ls~n~l~~lp~-~--------------~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~  506 (567)
T 1dce_A          444 RVLHLAHKDLTVLCH-L--------------EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-GVAN  506 (567)
T ss_dssp             SEEECTTSCCSSCCC-G--------------GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTT
T ss_pred             eEEEecCCCCCCCcC-c--------------cccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-ccCC
Confidence            348888888887764 4              456789999999999999999999999999999999 6888899 7999


Q ss_pred             CCcCceeeeecccCCccC--CcccCCCCCCcEEECCCCcccccc
Q 015983          102 LRCLRMLHLSGCSKLKNA--PETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus       102 L~sL~~L~Ls~C~~L~~l--P~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      +++|++|+|++| .+..+  |..++.+++|+.|++++|.++.++
T Consensus       507 l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          507 LPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             CSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            999999999995 67776  888999999999999999987754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.19  E-value=1.6e-11  Score=115.55  Aligned_cols=125  Identities=19%  Similarity=0.245  Sum_probs=96.1

Q ss_pred             CcEEeccCCCCCccC------CCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccC
Q 015983            4 LKTLVLSGCLKLKKF------PDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIEL   77 (397)
Q Consensus         4 L~~L~LsgC~~L~~l------P~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~   77 (397)
                      |..|+|+++ .++.+      +.+..|++++|.++.+| .+              ..+++|++|+|++|.|+.+|. +..
T Consensus        21 l~~l~l~~~-~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l--------------~~l~~L~~L~L~~N~i~~~~~-l~~   83 (263)
T 1xeu_A           21 AVKQNLGKQ-SVTDLVSQKELSGVQNFNGDNSNIQSLA-GM--------------QFFTNLKELHLSHNQISDLSP-LKD   83 (263)
T ss_dssp             HHHHHHTCS-CTTSEECHHHHTTCSEEECTTSCCCCCT-TG--------------GGCTTCCEEECCSSCCCCCGG-GTT
T ss_pred             HHHHHhcCC-CcccccchhhcCcCcEEECcCCCcccch-HH--------------hhCCCCCEEECCCCccCCChh-hcc
Confidence            344555554 33333      34444788888777765 32              567889999999999999988 999


Q ss_pred             CCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccccCCC
Q 015983           78 LSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIAQKDS  150 (397)
Q Consensus        78 L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~~l~~  150 (397)
                      +++|+.|+|++ +.+..+|....  ++|++|++++| .+..+| .+..+++|+.|++++|.++.++.+..++.
T Consensus        84 l~~L~~L~L~~-N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~  151 (263)
T 1xeu_A           84 LTKLEELSVNR-NRLKNLNGIPS--ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSK  151 (263)
T ss_dssp             CSSCCEEECCS-SCCSCCTTCCC--SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTT
T ss_pred             CCCCCEEECCC-CccCCcCcccc--CcccEEEccCC-ccCCCh-hhcCcccccEEECCCCcCCCChHHccCCC
Confidence            99999999999 68888887443  89999999995 777776 47889999999999999988766554443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.19  E-value=1e-10  Score=113.02  Aligned_cols=133  Identities=20%  Similarity=0.285  Sum_probs=67.3

Q ss_pred             CCcEEeccCCCCCccCCCcc-----eEEeecCCccccch-hhhhhhccc----------cccCccCCCCCCCCEEEeeCC
Q 015983            3 SLKTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSF-AIELLFRLV----------QEFPEKTSSKDQLLEIHLEGT   66 (397)
Q Consensus         3 sL~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~~   66 (397)
                      +|+.++++++ .++.+|...     .|+|++|.++.+++ .+..+++|+          ...|..++.+++|++|+|++|
T Consensus        34 ~l~~l~~~~~-~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           34 HLRVVQCSDL-GLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             ETTEEECCSS-CCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             cCCEEECCCC-CccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            4788888887 566777533     38888888887754 444443333          122344444555555555555


Q ss_pred             CCCcCCccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCC--ccCCcccCCCCCCcEEECCCCccc
Q 015983           67 AIRGLPASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKL--KNAPETLGKVESLESAVETVTKFA  140 (397)
Q Consensus        67 ~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L--~~lP~~~~~L~~L~~L~ls~n~~~  140 (397)
                      .++.+|..+.  ++|+.|++++ +.+..+|. .+.++++|++|++++|..-  ...|..+..+ +|+.|++++|.++
T Consensus       113 ~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          113 HLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             cCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            5555544433  4455555554 34444433 2444555555555543211  1223333333 4444444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.19  E-value=9.1e-11  Score=117.78  Aligned_cols=85  Identities=16%  Similarity=0.174  Sum_probs=71.6

Q ss_pred             CCCCEEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccC-CcccCCCCCCcEE
Q 015983           56 DQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNA-PETLGKVESLESA  132 (397)
Q Consensus        56 ~~L~~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~~L  132 (397)
                      ++|++|+|++|.++.+ |..++.+++|+.|+|++ +.+..+ |..+.++++|++|+|++| .+..+ |..++.+++|+.|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVL  352 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEE
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCC-CcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEE
Confidence            5788999999988854 66789999999999999 466665 668999999999999996 45555 6778999999999


Q ss_pred             ECCCCccccc
Q 015983          133 VETVTKFAKA  142 (397)
Q Consensus       133 ~ls~n~~~~L  142 (397)
                      ++++|.++.+
T Consensus       353 ~Ls~N~l~~~  362 (455)
T 3v47_A          353 DLSYNHIRAL  362 (455)
T ss_dssp             ECCSSCCCEE
T ss_pred             ECCCCccccc
Confidence            9999988764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.19  E-value=5.1e-11  Score=122.84  Aligned_cols=142  Identities=20%  Similarity=0.145  Sum_probs=114.4

Q ss_pred             CCCCcEEeccCCCCC---------ccCCCcceEEeecCCccccchhhhhhhccc----------cccC-ccCCCCCCCCE
Q 015983            1 MKSLKTLVLSGCLKL---------KKFPDIVQVLWDGTDIRELSFAIELLFRLV----------QEFP-EKTSSKDQLLE   60 (397)
Q Consensus         1 L~sL~~L~LsgC~~L---------~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~----------~~~P-~~l~~l~~L~~   60 (397)
                      +++|+.|+|++|...         ..+|.+..|++++|.+..+|..+..+++|+          ...| ..+..+++|++
T Consensus       346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  425 (570)
T 2z63_A          346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  425 (570)
T ss_dssp             CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred             CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence            478999999998422         234566669999999999887777777665          2223 46788999999


Q ss_pred             EEeeCCCCCc-CCccccCCCCCCEEEecCCCCCC--CCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCC
Q 015983           61 IHLEGTAIRG-LPASIELLSGNVLLNLKDRKNLK--SLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVT  137 (397)
Q Consensus        61 L~Ls~~~i~~-lP~si~~L~~L~~L~Ls~c~~l~--~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n  137 (397)
                      |+|++|.++. .|..+..+++|+.|+|++| .+.  .+|..+..+++|++|++++|......|..+..+++|+.|++++|
T Consensus       426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeCcCCcccccchhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence            9999999985 5667899999999999995 454  68989999999999999997554445888999999999999999


Q ss_pred             cccccc
Q 015983          138 KFAKAE  143 (397)
Q Consensus       138 ~~~~L~  143 (397)
                      .++.++
T Consensus       505 ~l~~~~  510 (570)
T 2z63_A          505 QLKSVP  510 (570)
T ss_dssp             CCSCCC
T ss_pred             cCCCCC
Confidence            887653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.17  E-value=1.4e-10  Score=117.45  Aligned_cols=137  Identities=14%  Similarity=0.132  Sum_probs=67.6

Q ss_pred             CCCCcEEeccCCCC-------CccCCCcceEEeecCCccccchh-hhhhhccc----------cccCccCCCCCCCCEEE
Q 015983            1 MKSLKTLVLSGCLK-------LKKFPDIVQVLWDGTDIRELSFA-IELLFRLV----------QEFPEKTSSKDQLLEIH   62 (397)
Q Consensus         1 L~sL~~L~LsgC~~-------L~~lP~~~~L~Ls~n~l~~Lp~s-i~~L~~L~----------~~~P~~l~~l~~L~~L~   62 (397)
                      +++|+.|+|++|..       +..++.+..|+|++|.++.+|.. +..+++|.          ...+..+..+++|++|+
T Consensus       127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  206 (477)
T 2id5_A          127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE  206 (477)
T ss_dssp             CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred             cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence            46788888888742       23344455588888888877653 45555544          12223445555555555


Q ss_pred             eeCCC-CCcCCccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCcc
Q 015983           63 LEGTA-IRGLPASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKF  139 (397)
Q Consensus        63 Ls~~~-i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~  139 (397)
                      |++|. +..+|..+....+|+.|+|++ +.+..+|. .+..+++|+.|+|++| .+..++ ..+..+++|+.|++++|.+
T Consensus       207 l~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (477)
T 2id5_A          207 ISHWPYLDTMTPNCLYGLNLTSLSITH-CNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQL  284 (477)
T ss_dssp             EECCTTCCEECTTTTTTCCCSEEEEES-SCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred             CCCCccccccCcccccCccccEEECcC-CcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCcc
Confidence            55542 224444433333444444444 23444442 3444444444444443 222222 2334444444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.17  E-value=5.1e-11  Score=122.02  Aligned_cols=139  Identities=15%  Similarity=0.067  Sum_probs=89.2

Q ss_pred             CCCCcEEeccCCCCCccCC---CcceEEeecCCccccchh-hhhhhccc-------cccCccCCCCCCCCEEEeeCCCCC
Q 015983            1 MKSLKTLVLSGCLKLKKFP---DIVQVLWDGTDIRELSFA-IELLFRLV-------QEFPEKTSSKDQLLEIHLEGTAIR   69 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP---~~~~L~Ls~n~l~~Lp~s-i~~L~~L~-------~~~P~~l~~l~~L~~L~Ls~~~i~   69 (397)
                      +++|++|+|++| .++.+|   .+..|++++|.++.++.. +.+|+.|.       ...|..++.+++|++|+|++|.++
T Consensus        79 l~~L~~L~Ls~N-~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (487)
T 3oja_A           79 LSTLRTLDLNNN-YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (487)
T ss_dssp             CTTCCEEECCSS-EEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred             CCCCCEEEecCC-cCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC
Confidence            467888888887 344443   344477777777765543 22333332       333555666777777888777777


Q ss_pred             c-CCcccc-CCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983           70 G-LPASIE-LLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        70 ~-lP~si~-~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      . .|..+. .+++|+.|+|++ +.+..+|. ...+++|++|+|++ +.+..+|..+..+++|+.|++++|.++.++
T Consensus       158 ~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp  230 (487)
T 3oja_A          158 TVNFAELAASSDTLEHLNLQY-NFIYDVKG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLVLIE  230 (487)
T ss_dssp             EEEGGGGGGGTTTCCEEECTT-SCCCEEEC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred             CcChHHHhhhCCcccEEecCC-Cccccccc-cccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCCcCcccc
Confidence            5 344554 677777777777 46666655 33577777777777 356667666777777777777777766543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.17  E-value=7e-11  Score=120.90  Aligned_cols=139  Identities=13%  Similarity=0.101  Sum_probs=105.6

Q ss_pred             CCCCcEEeccCCCCCccCCC-----------cceEEeecCCccccc--hhhhhhhccc-------cccCccCCCCCCCCE
Q 015983            1 MKSLKTLVLSGCLKLKKFPD-----------IVQVLWDGTDIRELS--FAIELLFRLV-------QEFPEKTSSKDQLLE   60 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP~-----------~~~L~Ls~n~l~~Lp--~si~~L~~L~-------~~~P~~l~~l~~L~~   60 (397)
                      |++|+.|++++|..  .+|.           +..|++++|.+..++  ..+..|+.|.       +.+|..++.+++|++
T Consensus       275 l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  352 (520)
T 2z7x_B          275 LKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET  352 (520)
T ss_dssp             CCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE
T ss_pred             CceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCE
Confidence            45788889998854  7773           445999999888665  3334444443       446788889999999


Q ss_pred             EEeeCCCCCc---CCccccCCCCCCEEEecCCCCCCC-CChh-ccCCCcCceeeeecccCCccCCcccCCCCCCcEEECC
Q 015983           61 IHLEGTAIRG---LPASIELLSGNVLLNLKDRKNLKS-LPST-INGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVET  135 (397)
Q Consensus        61 L~Ls~~~i~~---lP~si~~L~~L~~L~Ls~c~~l~~-LP~~-i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls  135 (397)
                      |+|++|.++.   +|..++.+++|+.|+|++ +.+.. +|.. +..+++|++|++++|.....+|..+.  ++|+.|+++
T Consensus       353 L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~-N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls  429 (520)
T 2z7x_B          353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQ-NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH  429 (520)
T ss_dssp             EECCSSCCCBHHHHHHHHTTCTTCCEEECCS-SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC
T ss_pred             EEccCCccCccccchHHHhhCCCCCEEECCC-CcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECC
Confidence            9999999985   456788999999999998 56666 8864 77889999999999765566666543  689999999


Q ss_pred             CCccccccc
Q 015983          136 VTKFAKAEL  144 (397)
Q Consensus       136 ~n~~~~L~~  144 (397)
                      +|.++.++.
T Consensus       430 ~N~l~~ip~  438 (520)
T 2z7x_B          430 SNKIKSIPK  438 (520)
T ss_dssp             SSCCCCCCG
T ss_pred             CCcccccch
Confidence            998876553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.17  E-value=1.4e-10  Score=122.58  Aligned_cols=134  Identities=17%  Similarity=0.158  Sum_probs=76.5

Q ss_pred             EEeccCCCCCccCCCcc-----eEEeecCCccccch-hhhhhhccc----------cccCccCCCCCCCCEEEeeCCCCC
Q 015983            6 TLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSF-AIELLFRLV----------QEFPEKTSSKDQLLEIHLEGTAIR   69 (397)
Q Consensus         6 ~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~~~i~   69 (397)
                      .++.+++ .++.+|...     .|+|++|.++.+|. .+.++++|+          ...|..++.+++|++|+|++|.++
T Consensus         8 ~~~cs~~-~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   86 (680)
T 1ziw_A            8 VADCSHL-KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS   86 (680)
T ss_dssp             EEECCSS-CCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC
T ss_pred             eeECCCC-CccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC
Confidence            4555554 455555322     26666666666554 345555443          223444555666666666666666


Q ss_pred             cCCc-cccCCCCCCEEEecCCCCCCCCC-hhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983           70 GLPA-SIELLSGNVLLNLKDRKNLKSLP-STINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus        70 ~lP~-si~~L~~L~~L~Ls~c~~l~~LP-~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~  141 (397)
                      .+|. .++.+++|+.|+|++ +.+..+| ..++++++|++|++++|......|..++.+++|+.|++++|.++.
T Consensus        87 ~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A           87 QLSDKTFAFCTNLTELHLMS-NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             CCCTTTTTTCTTCSEEECCS-SCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred             ccChhhhccCCCCCEEECCC-CccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence            6665 366666666666666 3455554 456666666666666654333344555666666666666665543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.16  E-value=1.6e-10  Score=119.86  Aligned_cols=139  Identities=12%  Similarity=0.118  Sum_probs=106.7

Q ss_pred             CCcEEeccCCCCC-----ccCCCcceEEeecCCccc-cchhhhhhhccc---------c---ccCccCCCCCCCCEEEee
Q 015983            3 SLKTLVLSGCLKL-----KKFPDIVQVLWDGTDIRE-LSFAIELLFRLV---------Q---EFPEKTSSKDQLLEIHLE   64 (397)
Q Consensus         3 sL~~L~LsgC~~L-----~~lP~~~~L~Ls~n~l~~-Lp~si~~L~~L~---------~---~~P~~l~~l~~L~~L~Ls   64 (397)
                      +|+.|++++|...     ..++.+..|++++|.++. +|..+..+++|+         .   .+|..+..+++|++|+|+
T Consensus       332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~  411 (562)
T 3a79_B          332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS  411 (562)
T ss_dssp             CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred             cceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence            5888888887432     334455558888888886 566777666665         2   334567889999999999


Q ss_pred             CCCCCc-CCcc-ccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccc
Q 015983           65 GTAIRG-LPAS-IELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKA  142 (397)
Q Consensus        65 ~~~i~~-lP~s-i~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L  142 (397)
                      +|.++. +|.. +..+++|+.|++++|.--..+|..+.  ++|++|++++| .+..+|..+..+++|+.|++++|.++.+
T Consensus       412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~l  488 (562)
T 3a79_B          412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLKSV  488 (562)
T ss_dssp             TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred             CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCCCC
Confidence            999997 8865 78899999999999543344555432  68999999995 7889998888999999999999988876


Q ss_pred             cc
Q 015983          143 EL  144 (397)
Q Consensus       143 ~~  144 (397)
                      +.
T Consensus       489 ~~  490 (562)
T 3a79_B          489 PD  490 (562)
T ss_dssp             CT
T ss_pred             CH
Confidence            54

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.16  E-value=7e-11  Score=121.80  Aligned_cols=142  Identities=15%  Similarity=0.165  Sum_probs=116.1

Q ss_pred             CCCCcEEeccCCCCCc-----cCCCcceEEeecCCcccc---chhhhhhhccc---------cccCccCCCCCCCCEEEe
Q 015983            1 MKSLKTLVLSGCLKLK-----KFPDIVQVLWDGTDIREL---SFAIELLFRLV---------QEFPEKTSSKDQLLEIHL   63 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~-----~lP~~~~L~Ls~n~l~~L---p~si~~L~~L~---------~~~P~~l~~l~~L~~L~L   63 (397)
                      +++|+.|++++|....     .+|.+..|++++|.++.+   |..+..+++|+         ..+|..+..+++|++|++
T Consensus       324 l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l  403 (570)
T 2z63_A          324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF  403 (570)
T ss_dssp             CSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred             ccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEc
Confidence            4689999999986543     455666699999999866   67777777765         345555788999999999


Q ss_pred             eCCCCCcCCc--cccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCC-ccCCcccCCCCCCcEEECCCCccc
Q 015983           64 EGTAIRGLPA--SIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKL-KNAPETLGKVESLESAVETVTKFA  140 (397)
Q Consensus        64 s~~~i~~lP~--si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L-~~lP~~~~~L~~L~~L~ls~n~~~  140 (397)
                      ++|.++.++.  .+..+++|+.|++++|......|..+.++++|++|++++|... ..+|..+..+++|+.|++++|.++
T Consensus       404 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~  483 (570)
T 2z63_A          404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE  483 (570)
T ss_dssp             TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred             cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc
Confidence            9999987654  6889999999999996544556778899999999999997544 468999999999999999999887


Q ss_pred             cc
Q 015983          141 KA  142 (397)
Q Consensus       141 ~L  142 (397)
                      .+
T Consensus       484 ~~  485 (570)
T 2z63_A          484 QL  485 (570)
T ss_dssp             EE
T ss_pred             cC
Confidence            64

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.16  E-value=4e-10  Score=101.51  Aligned_cols=123  Identities=23%  Similarity=0.345  Sum_probs=99.9

Q ss_pred             CCCcEEeccCCCCCccCC--------CcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc
Q 015983            2 KSLKTLVLSGCLKLKKFP--------DIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA   73 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP--------~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~   73 (397)
                      ++|+.|+|++| .++.+|        .+..|+|++|.++.+|...             +..+++|++|+|++|.++.+|.
T Consensus        28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~Ls~n~l~~~~~   93 (208)
T 2o6s_A           28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV-------------FNKLTSLTYLNLSTNQLQSLPN   93 (208)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT-------------TTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhh-------------cCCCCCcCEEECCCCcCCccCH
Confidence            47999999998 344444        3444999999998877542             3678899999999999998886


Q ss_pred             c-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCccc
Q 015983           74 S-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFA  140 (397)
Q Consensus        74 s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~  140 (397)
                      . +..+++|+.|+|++ +.+..+|. .+..+++|++|++++| .+..+|. .+..+++|+.|++++|.+.
T Consensus        94 ~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           94 GVFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             hHhcCccCCCEEEcCC-CcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee
Confidence            5 68999999999998 67888876 4788999999999995 6667765 4788999999999999754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.15  E-value=8e-11  Score=115.66  Aligned_cols=136  Identities=21%  Similarity=0.171  Sum_probs=105.9

Q ss_pred             CCCcEEeccCCCCCcc---------CCCcceEEeecCCccccch-hhhhhhccc---------ccc-CccCCCCCCCCEE
Q 015983            2 KSLKTLVLSGCLKLKK---------FPDIVQVLWDGTDIRELSF-AIELLFRLV---------QEF-PEKTSSKDQLLEI   61 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~---------lP~~~~L~Ls~n~l~~Lp~-si~~L~~L~---------~~~-P~~l~~l~~L~~L   61 (397)
                      ..|+.|+|++|. ++.         ++.+..|+|++|.|+.++. .+..+++|+         ..+ +..+..+++|++|
T Consensus        39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  117 (361)
T 2xot_A           39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL  117 (361)
T ss_dssp             TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence            358899999983 443         3444459999999998875 467777665         333 4467899999999


Q ss_pred             EeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCCChhc----cCCCcCceeeeecccCCccCCc-ccCCCCC--CcEEE
Q 015983           62 HLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSLPSTI----NGLRCLRMLHLSGCSKLKNAPE-TLGKVES--LESAV  133 (397)
Q Consensus        62 ~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~LP~~i----~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~--L~~L~  133 (397)
                      +|++|.|+.+ |..+..+++|+.|+|++ +.+..+|..+    ..+++|+.|+|++ +.+..+|. .+..++.  |+.|+
T Consensus       118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~  195 (361)
T 2xot_A          118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLY  195 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEE
T ss_pred             ECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEE
Confidence            9999999987 56799999999999999 7899998765    5799999999999 57888873 4555655  47789


Q ss_pred             CCCCccc
Q 015983          134 ETVTKFA  140 (397)
Q Consensus       134 ls~n~~~  140 (397)
                      +++|++.
T Consensus       196 l~~N~~~  202 (361)
T 2xot_A          196 LHNNPLE  202 (361)
T ss_dssp             CCSSCEE
T ss_pred             ecCCCcc
Confidence            9998764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.15  E-value=1.1e-10  Score=122.36  Aligned_cols=125  Identities=18%  Similarity=0.239  Sum_probs=63.0

Q ss_pred             CCCcEEeccCCCCCccCCC--------cceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc
Q 015983            2 KSLKTLVLSGCLKLKKFPD--------IVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA   73 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP~--------~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~   73 (397)
                      .+|+.|++++| .++.+|.        +..|+|++|.++.+++             ..++.+++|++|+|++|.|+.+|.
T Consensus        51 ~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~L~~n~l~~~~~  116 (597)
T 3oja_B           51 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDT-------------YAFAYAHTIQKLYMGFNAIRYLPP  116 (597)
T ss_dssp             CCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECT-------------TTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCCh-------------HHhcCCCCCCEEECCCCcCCCCCH
Confidence            45666666665 3444432        3336666666665543             233445555555555555554443


Q ss_pred             c-ccCCCCCCEEEecCCCCCCCCChh-ccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983           74 S-IELLSGNVLLNLKDRKNLKSLPST-INGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus        74 s-i~~L~~L~~L~Ls~c~~l~~LP~~-i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~  141 (397)
                      . ++.+++|+.|+|++ +.+..+|.. ++++++|++|+|++|......|..++.+++|+.|++++|.++.
T Consensus       117 ~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          117 HVFQNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             HHHcCCCCCCEEEeeC-CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            2 35555555555555 344455443 3455555555555542222223345555555555555555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.15  E-value=1.4e-10  Score=106.03  Aligned_cols=122  Identities=16%  Similarity=0.255  Sum_probs=84.7

Q ss_pred             CCcEEeccCCCCCccC---------CCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc
Q 015983            3 SLKTLVLSGCLKLKKF---------PDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA   73 (397)
Q Consensus         3 sL~~L~LsgC~~L~~l---------P~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~   73 (397)
                      .++.|+|++|. ++.+         +.+..|+|++|.|+.++..             .+..+++|++|+|++|.|+.+|.
T Consensus        33 ~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~-------------~~~~l~~L~~L~Ls~N~l~~~~~   98 (220)
T 2v70_A           33 YTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEG-------------AFEGASGVNEILLTSNRLENVQH   98 (220)
T ss_dssp             TCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTT-------------TTTTCTTCCEEECCSSCCCCCCG
T ss_pred             CCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHH-------------HhCCCCCCCEEECCCCccCccCH
Confidence            46778888873 3333         2333378888877776542             23567778888888888887765


Q ss_pred             c-ccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccC-CcccCCCCCCcEEECCCCccc
Q 015983           74 S-IELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNA-PETLGKVESLESAVETVTKFA  140 (397)
Q Consensus        74 s-i~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~~L~ls~n~~~  140 (397)
                      . +..+++|+.|+|++ +.+..+ |..+.++++|++|+|++| .+..+ |..+..+++|+.|++++|.+.
T Consensus        99 ~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           99 KMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             GGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             hHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            4 77788888888887 566665 566777888888888874 45554 667777888888888877654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.14  E-value=2.2e-10  Score=119.34  Aligned_cols=137  Identities=20%  Similarity=0.209  Sum_probs=84.0

Q ss_pred             CCcEEeccCCCCCcc--------CCCcceEEeecCCccccchhhhhhhccc----------cccCccCCCCCCCCEEEee
Q 015983            3 SLKTLVLSGCLKLKK--------FPDIVQVLWDGTDIRELSFAIELLFRLV----------QEFPEKTSSKDQLLEIHLE   64 (397)
Q Consensus         3 sL~~L~LsgC~~L~~--------lP~~~~L~Ls~n~l~~Lp~si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls   64 (397)
                      +|+.|+|++|. +..        ++.+..|++++|.++.+|..+..+++|+          ...|..+..+++|++|+++
T Consensus       255 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHY-FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCc-cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            46677777763 222        2333347777777777777666555554          2234456666777777777


Q ss_pred             CCCCC-cCCcc-ccCCCCCCEEEecCCCCCCCC---ChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcc
Q 015983           65 GTAIR-GLPAS-IELLSGNVLLNLKDRKNLKSL---PSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKF  139 (397)
Q Consensus        65 ~~~i~-~lP~s-i~~L~~L~~L~Ls~c~~l~~L---P~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~  139 (397)
                      +|.+. .+|.. +..+++|+.|++++ +.+..+   |..+..+++|++|++++|......|..+..+++|+.|++++|.+
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCS-SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CCCcccccchhhhhccCcCCEEECCC-CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            77665 55543 66677777777776 345444   45566677777777777543344455666667777777777665


Q ss_pred             cc
Q 015983          140 AK  141 (397)
Q Consensus       140 ~~  141 (397)
                      +.
T Consensus       413 ~~  414 (606)
T 3t6q_A          413 KV  414 (606)
T ss_dssp             EC
T ss_pred             CC
Confidence            43

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.14  E-value=2.1e-10  Score=121.14  Aligned_cols=77  Identities=25%  Similarity=0.243  Sum_probs=46.4

Q ss_pred             CCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECC
Q 015983           56 DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVET  135 (397)
Q Consensus        56 ~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls  135 (397)
                      ++|+.|++++|.|+.+|..   +++|+.|+|++ |.+..+|   ..+++|+.|+|++| .+..+|.   .+++|+.|+++
T Consensus       201 ~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~-N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls  269 (622)
T 3g06_A          201 SELYKLWAYNNRLTSLPAL---PSGLKELIVSG-NRLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVY  269 (622)
T ss_dssp             TTCCEEECCSSCCSSCCCC---CTTCCEEECCS-SCCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECC
T ss_pred             chhhEEECcCCcccccCCC---CCCCCEEEccC-CccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCC
Confidence            3444444444444444432   25677777776 4666666   33567777777774 5666665   45667777777


Q ss_pred             CCcccccc
Q 015983          136 VTKFAKAE  143 (397)
Q Consensus       136 ~n~~~~L~  143 (397)
                      +|.++.++
T Consensus       270 ~N~L~~lp  277 (622)
T 3g06_A          270 RNQLTRLP  277 (622)
T ss_dssp             SSCCCSCC
T ss_pred             CCCCCcCC
Confidence            77766543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.14  E-value=2.5e-10  Score=119.29  Aligned_cols=127  Identities=23%  Similarity=0.260  Sum_probs=94.0

Q ss_pred             CCcEEeccCCCCCccCCC-----cceEEeecCCccccchhhhhhhccc------cccCccCCCCCCCCEEEeeCCCCCcC
Q 015983            3 SLKTLVLSGCLKLKKFPD-----IVQVLWDGTDIRELSFAIELLFRLV------QEFPEKTSSKDQLLEIHLEGTAIRGL   71 (397)
Q Consensus         3 sL~~L~LsgC~~L~~lP~-----~~~L~Ls~n~l~~Lp~si~~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~~l   71 (397)
                      +|+.|+|++| .++.+|.     +..|+|++|.|+.+|..+.+|+.|.      ..+|. +..  +|++|+|++|.|+.+
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~l  135 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTML  135 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCC
T ss_pred             CccEEEeCCC-CCCccCHhHcCCCCEEECcCCCCcccccccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCC
Confidence            7999999998 5777886     3349999999999993223344333      34666 443  788888888888888


Q ss_pred             CccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccc
Q 015983           72 PASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAEL  144 (397)
Q Consensus        72 P~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~  144 (397)
                      |.   .+++|+.|+|++ |.+..+|.   .+++|++|+|++| .+..+|. +.  ++|+.|++++|.++.++.
T Consensus       136 p~---~l~~L~~L~Ls~-N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          136 PE---LPALLEYINADN-NQLTMLPE---LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             CC---CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred             CC---cCccccEEeCCC-CccCcCCC---cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCCCCCchhh
Confidence            77   577888888887 57777876   4678888888884 5677877 55  778888888887776554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.13  E-value=3.5e-10  Score=114.91  Aligned_cols=130  Identities=13%  Similarity=0.175  Sum_probs=96.1

Q ss_pred             CCCCcEEeccCCCCCccCC-----CcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCC
Q 015983            1 MKSLKTLVLSGCLKLKKFP-----DIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGT   66 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP-----~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~   66 (397)
                      +++|++|+|++| .++.+|     .+..|++++|.++.+|  ++.+++|+         ..+|  ++.+++|++|++++|
T Consensus        63 l~~L~~L~Ls~n-~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           63 LTGLTKLICTSN-NITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARN  137 (457)
T ss_dssp             CTTCSEEECCSS-CCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTS
T ss_pred             cCCCCEEEccCC-cCCeEccccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCC
Confidence            468999999998 354443     4444999999998886  66666665         3344  678899999999999


Q ss_pred             CCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccc
Q 015983           67 AIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKA  142 (397)
Q Consensus        67 ~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L  142 (397)
                      .++.+|  ++.+++|+.|++++|..+..++  +..+++|++|++++| .+..+|  ++.+++|+.|++++|.++.+
T Consensus       138 ~l~~l~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N~l~~~  206 (457)
T 3bz5_A          138 TLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTNNITKL  206 (457)
T ss_dssp             CCSCCC--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSSCCSCC
T ss_pred             ccceec--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCCcCCee
Confidence            998875  7788888888888866676663  667788888888874 566666  56677777777777766554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.13  E-value=5.3e-11  Score=122.38  Aligned_cols=134  Identities=14%  Similarity=0.162  Sum_probs=71.8

Q ss_pred             CCcEEeccCCCCCcc--------CCCcceEEeecCCccccc-hhhhhhhccc---------ccc-CccCCCCCCCCEEEe
Q 015983            3 SLKTLVLSGCLKLKK--------FPDIVQVLWDGTDIRELS-FAIELLFRLV---------QEF-PEKTSSKDQLLEIHL   63 (397)
Q Consensus         3 sL~~L~LsgC~~L~~--------lP~~~~L~Ls~n~l~~Lp-~si~~L~~L~---------~~~-P~~l~~l~~L~~L~L   63 (397)
                      +|++|+|++|. ++.        ++.+..|+|++|.++.++ ..+..+++|+         ..+ |..++.+++|++|+|
T Consensus        27 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           27 AMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            56777777763 222        223333777777776655 3455554443         222 223556666666666


Q ss_pred             eCCCCCc--CCccccCCCCCCEEEecCCCCCCCCC-hhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCC
Q 015983           64 EGTAIRG--LPASIELLSGNVLLNLKDRKNLKSLP-STINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVT  137 (397)
Q Consensus        64 s~~~i~~--lP~si~~L~~L~~L~Ls~c~~l~~LP-~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n  137 (397)
                      ++|.++.  +|..++.+++|+.|++++|..+..+| ..+.++++|++|++++|.....+|..++.+++|+.|+++.|
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence            6666653  34556666666666666644455554 34556666666666664433334555555444444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.13  E-value=4.1e-10  Score=114.11  Aligned_cols=142  Identities=15%  Similarity=0.268  Sum_probs=104.2

Q ss_pred             CCCCcEEeccCCCCC-----ccCCCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCC
Q 015983            1 MKSLKTLVLSGCLKL-----KKFPDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGT   66 (397)
Q Consensus         1 L~sL~~L~LsgC~~L-----~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~   66 (397)
                      +++|+.|+|++|...     ..++.+..|++++|.++.++ .+..+++|+         ..++. +..+++|++|+|++|
T Consensus       198 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n  275 (466)
T 1o6v_A          198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN  275 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS
T ss_pred             CCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCC
Confidence            468899999988432     22344555899998888775 355555554         22333 677888999999999


Q ss_pred             CCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccc
Q 015983           67 AIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIA  146 (397)
Q Consensus        67 ~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~  146 (397)
                      .++.+|. +..+++|+.|++++ +.+..++. +..+++|+.|++++| .+..++. +..+++|+.|++++|.++.++.+.
T Consensus       276 ~l~~~~~-~~~l~~L~~L~L~~-n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~  350 (466)
T 1o6v_A          276 QISNISP-LAGLTALTNLELNE-NQLEDISP-ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNNKVSDVSSLA  350 (466)
T ss_dssp             CCCCCGG-GTTCTTCSEEECCS-SCCSCCGG-GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSSCCCCCGGGT
T ss_pred             ccCcccc-ccCCCccCeEEcCC-CcccCchh-hcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCCccCCchhhc
Confidence            9988877 88889999999998 57777776 778889999999986 4555544 577888899999888887765554


Q ss_pred             cCC
Q 015983          147 QKD  149 (397)
Q Consensus       147 ~l~  149 (397)
                      .++
T Consensus       351 ~l~  353 (466)
T 1o6v_A          351 NLT  353 (466)
T ss_dssp             TCT
T ss_pred             cCC
Confidence            433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.13  E-value=1e-10  Score=122.27  Aligned_cols=82  Identities=23%  Similarity=0.390  Sum_probs=65.6

Q ss_pred             CCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCC
Q 015983           57 QLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETV  136 (397)
Q Consensus        57 ~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~  136 (397)
                      .|+.|+|++|.|+.+|. ++.+++|+.|+|++ |.+..+|..++.+++|+.|+|++ +.+..+| .++.+++|+.|++++
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCc-ccccccchhhhcCCCCCEEECCC-CCCCCCc-ccCCCCCCcEEECCC
Confidence            47788888888888886 88888888888887 57778888888888888888888 4666777 677888888888888


Q ss_pred             Cccccc
Q 015983          137 TKFAKA  142 (397)
Q Consensus       137 n~~~~L  142 (397)
                      |.++.+
T Consensus       518 N~l~~~  523 (567)
T 1dce_A          518 NRLQQS  523 (567)
T ss_dssp             SCCCSS
T ss_pred             CCCCCC
Confidence            877765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.13  E-value=1.6e-10  Score=100.57  Aligned_cols=109  Identities=20%  Similarity=0.184  Sum_probs=91.8

Q ss_pred             CCcceEEeecCCcc--ccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCC-C
Q 015983           19 PDIVQVLWDGTDIR--ELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKS-L   95 (397)
Q Consensus        19 P~~~~L~Ls~n~l~--~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~-L   95 (397)
                      +.+..|+|++|.++  .+|..+              ..+++|++|+|++|.|+.+ ..+..+++|+.|+|++ +.+.. +
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~--------------~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-N~l~~~~   87 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLT--------------AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSE-NRIFGGL   87 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCC--------------GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEES-CCCCSCC
T ss_pred             ccCCEEECCCCCCChhhHHHHH--------------HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcC-CcCchHH
Confidence            44556999999988  666543              5667899999999999988 7899999999999999 46666 8


Q ss_pred             ChhccCCCcCceeeeecccCCccCC--cccCCCCCCcEEECCCCccccccc
Q 015983           96 PSTINGLRCLRMLHLSGCSKLKNAP--ETLGKVESLESAVETVTKFAKAEL  144 (397)
Q Consensus        96 P~~i~~L~sL~~L~Ls~C~~L~~lP--~~~~~L~~L~~L~ls~n~~~~L~~  144 (397)
                      |..+..+++|++|++++| .+..+|  ..+..+++|+.|++++|.++.++.
T Consensus        88 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A           88 DMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             CHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             HHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            888888999999999995 788876  678899999999999998877653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.13  E-value=3.2e-10  Score=115.16  Aligned_cols=130  Identities=19%  Similarity=0.237  Sum_probs=98.6

Q ss_pred             CCCcEEeccCCCCCccCCC----cceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCCCC
Q 015983            2 KSLKTLVLSGCLKLKKFPD----IVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGTAI   68 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP~----~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~~i   68 (397)
                      ++|+.|+|++| .+..+|.    +..|++++|.++.+| .++.+++|+         ..+|..   +.+|++|++++|.+
T Consensus       111 ~~L~~L~l~~n-~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l  185 (454)
T 1jl5_A          111 QSLKSLLVDNN-NLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQL  185 (454)
T ss_dssp             TTCCEEECCSS-CCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC
T ss_pred             CCCcEEECCCC-ccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcC
Confidence            46788888887 4555543    334999999999888 577777765         335543   35789999999999


Q ss_pred             CcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983           69 RGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        69 ~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      +.+| .++.+++|+.|++++ +.+..+|...   ++|++|++++| .+..+|. ++.+++|+.|++++|.++.++
T Consensus       186 ~~l~-~~~~l~~L~~L~l~~-N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N~l~~l~  253 (454)
T 1jl5_A          186 EELP-ELQNLPFLTAIYADN-NSLKKLPDLP---LSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNLLKTLP  253 (454)
T ss_dssp             SSCC-CCTTCTTCCEEECCS-SCCSSCCCCC---TTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSCCSSCC
T ss_pred             CcCc-cccCCCCCCEEECCC-CcCCcCCCCc---CcccEEECcCC-cCCcccc-cCCCCCCCEEECCCCcCCccc
Confidence            8888 688899999999988 5777777643   58888888885 6668885 778888888888888877654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.12  E-value=2.8e-10  Score=100.53  Aligned_cols=100  Identities=19%  Similarity=0.276  Sum_probs=85.3

Q ss_pred             EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCCChh-ccC
Q 015983           24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSLPST-ING  101 (397)
Q Consensus        24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~LP~~-i~~  101 (397)
                      ++++++.++.+|..+                .++|++|+|++|.|+.+ |..++.+++|+.|+|++ |.+..+|.. +.+
T Consensus        17 l~~~~n~l~~iP~~~----------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~   79 (174)
T 2r9u_A           17 VNCQNIRLASVPAGI----------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDK   79 (174)
T ss_dssp             EECCSSCCSSCCSCC----------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred             EEeCCCCCCccCCCc----------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCC
Confidence            788888888877643                25799999999999988 45789999999999999 689999875 588


Q ss_pred             CCcCceeeeecccCCccCCcc-cCCCCCCcEEECCCCcccc
Q 015983          102 LRCLRMLHLSGCSKLKNAPET-LGKVESLESAVETVTKFAK  141 (397)
Q Consensus       102 L~sL~~L~Ls~C~~L~~lP~~-~~~L~~L~~L~ls~n~~~~  141 (397)
                      +++|++|+|++ +.+..+|.. +..+++|+.|++++|.+.-
T Consensus        80 l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           80 LTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             cchhhEEECCC-CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            99999999999 578888764 8899999999999998754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.12  E-value=4.3e-10  Score=114.15  Aligned_cols=130  Identities=17%  Similarity=0.246  Sum_probs=91.0

Q ss_pred             CCcEEeccCCCCCccCCCc----ceEEeecCCccccchhhhhhhccc------cccCccCCCCCCCCEEEeeCCCCCcCC
Q 015983            3 SLKTLVLSGCLKLKKFPDI----VQVLWDGTDIRELSFAIELLFRLV------QEFPEKTSSKDQLLEIHLEGTAIRGLP   72 (397)
Q Consensus         3 sL~~L~LsgC~~L~~lP~~----~~L~Ls~n~l~~Lp~si~~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~~lP   72 (397)
                      +|+.|++++| .++.+|..    ..|++++|.++.+|..+.+|+.|.      ..+|..   .++|++|+|++|.++.+|
T Consensus        72 ~l~~L~l~~~-~l~~lp~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp  147 (454)
T 1jl5_A           72 QAHELELNNL-GLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP  147 (454)
T ss_dssp             TCSEEECTTS-CCSCCCSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC
T ss_pred             CCCEEEecCC-ccccCCCCcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc
Confidence            4688888887 46666543    338888888888887665565554      223321   257888888888888887


Q ss_pred             ccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983           73 ASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        73 ~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                       .++.+++|+.|++++ +.+..+|..+   .+|++|++++| .+..+| .++.+++|+.|++++|.++.++
T Consensus       148 -~~~~l~~L~~L~l~~-N~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l~~l~  211 (454)
T 1jl5_A          148 -ELQNSSFLKIIDVDN-NSLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNSLKKLP  211 (454)
T ss_dssp             -CCTTCTTCCEEECCS-SCCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCC
T ss_pred             -ccCCCCCCCEEECCC-CcCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCCcCCcCC
Confidence             588888888888887 4677777643   57788888874 566677 4677777778887777766544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.11  E-value=2.8e-11  Score=124.02  Aligned_cols=137  Identities=17%  Similarity=0.089  Sum_probs=104.8

Q ss_pred             CCCCcEEeccCCCC-----CccCCCcceEEeecCCccccchhhhhhhccc------cccCccCCCCCCCCEEEeeCCCCC
Q 015983            1 MKSLKTLVLSGCLK-----LKKFPDIVQVLWDGTDIRELSFAIELLFRLV------QEFPEKTSSKDQLLEIHLEGTAIR   69 (397)
Q Consensus         1 L~sL~~L~LsgC~~-----L~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~   69 (397)
                      |++|++|+|++|..     +..+|.+..|+|++|.|+.+|.. .+|..|.      ..+|.  ..+++|+.|+|++|.++
T Consensus        57 l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~-~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~  133 (487)
T 3oja_A           57 FTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG-PSIETLHAANNNISRVSC--SRGQGKKNIYLANNKIT  133 (487)
T ss_dssp             CTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC-TTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCC
T ss_pred             CCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC-CCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCC
Confidence            57899999999853     23455666699999999988754 3444443      22222  34688999999999999


Q ss_pred             cC-CccccCCCCCCEEEecCCCCCCC-CChhcc-CCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983           70 GL-PASIELLSGNVLLNLKDRKNLKS-LPSTIN-GLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        70 ~l-P~si~~L~~L~~L~Ls~c~~l~~-LP~~i~-~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      .+ |..++.+++|+.|+|++ +.+.. .|..+. .+++|++|+|++| .+..+|.. ..+++|+.|++++|.++.++
T Consensus       134 ~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~  207 (487)
T 3oja_A          134 MLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSNKLAFMG  207 (487)
T ss_dssp             SGGGBCGGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSSCCCEEC
T ss_pred             CCCchhhcCCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecCCC-cccccccc-ccCCCCCEEECCCCCCCCCC
Confidence            77 55789999999999999 56665 466665 7899999999995 57777654 45899999999999987653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.11  E-value=4.5e-10  Score=113.81  Aligned_cols=140  Identities=15%  Similarity=0.274  Sum_probs=111.5

Q ss_pred             CCCCcEEeccCCCCCcc------CCCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983            1 MKSLKTLVLSGCLKLKK------FPDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG   65 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~------lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~   65 (397)
                      +++|+.|+|++|. +..      ++.+..|++++|.+..+++ ++.+++|+         ..++ .+..+++|+.|++++
T Consensus       176 l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~  252 (466)
T 1o6v_A          176 LTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLAN  252 (466)
T ss_dssp             CTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS
T ss_pred             CCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCC
Confidence            5789999999984 443      4455559999999998765 55566655         2232 467789999999999


Q ss_pred             CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccccc
Q 015983           66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELI  145 (397)
Q Consensus        66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l  145 (397)
                      |.++.++. +..+++|+.|++++ +.+..+|. +..+++|+.|++++| .+..++. ++.+++|+.|++++|.++.+..+
T Consensus       253 n~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~  327 (466)
T 1o6v_A          253 NQISNLAP-LSGLTKLTELKLGA-NQISNISP-LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNNISDISPV  327 (466)
T ss_dssp             SCCCCCGG-GTTCTTCSEEECCS-SCCCCCGG-GTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSCCSCCGGG
T ss_pred             Cccccchh-hhcCCCCCEEECCC-CccCcccc-ccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCcCCCchhh
Confidence            99998876 88999999999999 57888877 889999999999995 6666665 68899999999999998876544


Q ss_pred             ccC
Q 015983          146 AQK  148 (397)
Q Consensus       146 ~~l  148 (397)
                      ..+
T Consensus       328 ~~l  330 (466)
T 1o6v_A          328 SSL  330 (466)
T ss_dssp             GGC
T ss_pred             ccC
Confidence            433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.11  E-value=3.3e-10  Score=99.47  Aligned_cols=99  Identities=22%  Similarity=0.312  Sum_probs=83.1

Q ss_pred             EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCCChh-ccC
Q 015983           24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSLPST-ING  101 (397)
Q Consensus        24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~LP~~-i~~  101 (397)
                      |++++|.++.+|..+                .++|++|+|++|.|+.+ |..+..+++|+.|+|++ |.+..+|.. +.+
T Consensus        14 l~~s~n~l~~ip~~~----------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~   76 (170)
T 3g39_A           14 VDCSGKSLASVPTGI----------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDK   76 (170)
T ss_dssp             EECTTSCCSSCCSCC----------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTT
T ss_pred             EEeCCCCcCccCccC----------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccC
Confidence            777777787777543                25789999999999988 55689999999999999 688888764 589


Q ss_pred             CCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCccc
Q 015983          102 LRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFA  140 (397)
Q Consensus       102 L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~  140 (397)
                      +++|++|+|++ +.+..+|. .+..+++|+.|++++|++.
T Consensus        77 l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           77 LTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            99999999999 47778875 5889999999999999865

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.11  E-value=3.3e-10  Score=117.98  Aligned_cols=141  Identities=14%  Similarity=0.111  Sum_probs=109.4

Q ss_pred             CCCCcEEeccCCCC---------CccCCCcceEEeecCCcccc-chhhhhhhccc----------cccC-ccCCCCCCCC
Q 015983            1 MKSLKTLVLSGCLK---------LKKFPDIVQVLWDGTDIREL-SFAIELLFRLV----------QEFP-EKTSSKDQLL   59 (397)
Q Consensus         1 L~sL~~L~LsgC~~---------L~~lP~~~~L~Ls~n~l~~L-p~si~~L~~L~----------~~~P-~~l~~l~~L~   59 (397)
                      +++|+.|+|++|..         +..+|.+..|++++|.+..+ |..+..+++|+          ...| ..+..+++|+
T Consensus       349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  428 (606)
T 3t6q_A          349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK  428 (606)
T ss_dssp             CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred             cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence            46899999999843         23445566699999999876 45666666665          2233 3478899999


Q ss_pred             EEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCC----CChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEEC
Q 015983           60 EIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKS----LPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVE  134 (397)
Q Consensus        60 ~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~----LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~l  134 (397)
                      +|+|++|.++.. |..++.+++|+.|++++| .+..    .+..+..+++|++|++++|......|..++.+++|+.|++
T Consensus       429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  507 (606)
T 3t6q_A          429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL  507 (606)
T ss_dssp             EEECTTCCCBTTCTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EEECCCCccCCcCHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence            999999999865 566889999999999995 5543    2356888999999999997554455788999999999999


Q ss_pred             CCCccccc
Q 015983          135 TVTKFAKA  142 (397)
Q Consensus       135 s~n~~~~L  142 (397)
                      ++|.++.+
T Consensus       508 s~N~l~~~  515 (606)
T 3t6q_A          508 SHNRLTSS  515 (606)
T ss_dssp             CSSCCCGG
T ss_pred             CCCccCcC
Confidence            99988753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.11  E-value=5.7e-10  Score=117.93  Aligned_cols=141  Identities=18%  Similarity=0.205  Sum_probs=110.5

Q ss_pred             CCCCcEEeccCCCCCccC--------CCcceEEeecCCccccch-hhhhhhccc------------cccCccCCCCCCCC
Q 015983            1 MKSLKTLVLSGCLKLKKF--------PDIVQVLWDGTDIRELSF-AIELLFRLV------------QEFPEKTSSKDQLL   59 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~l--------P~~~~L~Ls~n~l~~Lp~-si~~L~~L~------------~~~P~~l~~l~~L~   59 (397)
                      +++|+.|+|++|.....+        +.+..|++++|.+..++. .+..+++|+            +.+|..+..+++|+
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~  483 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT  483 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred             CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence            468999999998543333        344459999999887654 455555554            35678888999999


Q ss_pred             EEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh---------hccCCCcCceeeeecccCCccCCc-ccCCCCC
Q 015983           60 EIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS---------TINGLRCLRMLHLSGCSKLKNAPE-TLGKVES  128 (397)
Q Consensus        60 ~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~---------~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~  128 (397)
                      .|+|++|.|+.+|.. +..+++|+.|+|++ +.+..++.         .+.++++|++|++++| .+..+|. .++.+++
T Consensus       484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~  561 (680)
T 1ziw_A          484 ILDLSNNNIANINDDMLEGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFE  561 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             EEECCCCCCCcCChhhhccccccCEEeCCC-CCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccC
Confidence            999999999988764 88999999999998 56766532         2678899999999994 6778875 5788999


Q ss_pred             CcEEECCCCcccccc
Q 015983          129 LESAVETVTKFAKAE  143 (397)
Q Consensus       129 L~~L~ls~n~~~~L~  143 (397)
                      |+.|++++|.++.++
T Consensus       562 L~~L~Ls~N~l~~l~  576 (680)
T 1ziw_A          562 LKIIDLGLNNLNTLP  576 (680)
T ss_dssp             CCEEECCSSCCCCCC
T ss_pred             cceeECCCCCCCcCC
Confidence            999999999887654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.11  E-value=1.1e-10  Score=99.47  Aligned_cols=117  Identities=19%  Similarity=0.241  Sum_probs=92.1

Q ss_pred             CCCcEEeccCCCCC-ccCCCc-------ceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCc-CC
Q 015983            2 KSLKTLVLSGCLKL-KKFPDI-------VQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRG-LP   72 (397)
Q Consensus         2 ~sL~~L~LsgC~~L-~~lP~~-------~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~-lP   72 (397)
                      ++|+.|+|++|..- +.+|..       ..|++++|.++.+ ..              ++.+++|++|+|++|.++. +|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~--------------~~~l~~L~~L~Ls~n~i~~~~~   81 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN--------------LPKLNKLKKLELSDNRVSGGLE   81 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TT--------------CCCCTTCCEEECCSSCCCSCTH
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hh--------------hhcCCCCCEEECCCCcccchHH
Confidence            46888999988533 255543       3388888888766 22              3678899999999999997 77


Q ss_pred             ccccCCCCCCEEEecCCCCCCCCC--hhccCCCcCceeeeecccCCccCCc----ccCCCCCCcEEECC
Q 015983           73 ASIELLSGNVLLNLKDRKNLKSLP--STINGLRCLRMLHLSGCSKLKNAPE----TLGKVESLESAVET  135 (397)
Q Consensus        73 ~si~~L~~L~~L~Ls~c~~l~~LP--~~i~~L~sL~~L~Ls~C~~L~~lP~----~~~~L~~L~~L~ls  135 (397)
                      ..++.+++|+.|++++ +.+..+|  ..+..+++|++|++++| .+..+|.    .+..+++|+.|+++
T Consensus        82 ~~~~~l~~L~~L~ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           82 VLAEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHHHHCTTCCEEECTT-SCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             HHhhhCCCCCEEECCC-CcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            7788899999999998 5788875  77889999999999995 6777765    57788889888775

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.10  E-value=3.4e-10  Score=117.36  Aligned_cols=120  Identities=13%  Similarity=0.023  Sum_probs=82.8

Q ss_pred             cceEEeecCCccccc--hhhhhhhccc-------cccCccCCCCCCCCEEEeeCCCCCcCC---ccccCCCCCCEEEecC
Q 015983           21 IVQVLWDGTDIRELS--FAIELLFRLV-------QEFPEKTSSKDQLLEIHLEGTAIRGLP---ASIELLSGNVLLNLKD   88 (397)
Q Consensus        21 ~~~L~Ls~n~l~~Lp--~si~~L~~L~-------~~~P~~l~~l~~L~~L~Ls~~~i~~lP---~si~~L~~L~~L~Ls~   88 (397)
                      +..|++++|.+..++  .....|+.|.       +..|..++.+++|++|+|++|.++.+|   ..++.+++|+.|++++
T Consensus       333 L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~  412 (562)
T 3a79_B          333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL  412 (562)
T ss_dssp             CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred             ceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence            445888888876554  2333333332       446777788888888888888888655   4577888888888888


Q ss_pred             CCCCCC-CCh-hccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983           89 RKNLKS-LPS-TINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        89 c~~l~~-LP~-~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                       +.+.. +|. .+..+++|++|++++|.....+|..+.  ++|+.|++++|.++.++
T Consensus       413 -N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip  466 (562)
T 3a79_B          413 -NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIP  466 (562)
T ss_dssp             -SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCC
T ss_pred             -CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccC
Confidence             45655 765 367788888888888654455554433  57888888888776554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.10  E-value=3.5e-11  Score=115.91  Aligned_cols=136  Identities=17%  Similarity=0.105  Sum_probs=98.1

Q ss_pred             CCCCcEEeccCCCC-----CccCCCcceEEeecCCccccchhhhhhhccc------cccCccCCCCCCCCEEEeeCCCCC
Q 015983            1 MKSLKTLVLSGCLK-----LKKFPDIVQVLWDGTDIRELSFAIELLFRLV------QEFPEKTSSKDQLLEIHLEGTAIR   69 (397)
Q Consensus         1 L~sL~~L~LsgC~~-----L~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~   69 (397)
                      +++|+.|+|++|..     +..++.+..|+|++|.++.+|.. ..|..|.      ..++.  ..+++|++|+|++|.++
T Consensus        57 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~  133 (317)
T 3o53_A           57 FTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG-PSIETLHAANNNISRVSC--SRGQGKKNIYLANNKIT  133 (317)
T ss_dssp             CTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEEC-TTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCC
T ss_pred             CCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCC-CCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCC
Confidence            46899999999843     23455556699999998887643 3344332      22222  34678999999999999


Q ss_pred             cCCc-cccCCCCCCEEEecCCCCCCCC-Chhc-cCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccc
Q 015983           70 GLPA-SIELLSGNVLLNLKDRKNLKSL-PSTI-NGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKA  142 (397)
Q Consensus        70 ~lP~-si~~L~~L~~L~Ls~c~~l~~L-P~~i-~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L  142 (397)
                      .++. .++.+++|+.|+|++ +.+..+ |..+ ..+++|++|++++| .+..+|.. ..+++|+.|++++|.++.+
T Consensus       134 ~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~l~~L~~L~Ls~N~l~~l  206 (317)
T 3o53_A          134 MLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSNKLAFM  206 (317)
T ss_dssp             SGGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSSCCCEE
T ss_pred             CccchhhhccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCC-cCcccccc-cccccCCEEECCCCcCCcc
Confidence            8754 688889999999998 566665 4444 46889999999985 67777654 3488899999999988765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.10  E-value=5.2e-10  Score=118.10  Aligned_cols=57  Identities=21%  Similarity=0.226  Sum_probs=34.9

Q ss_pred             CCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccc
Q 015983           80 GNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAEL  144 (397)
Q Consensus        80 ~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~  144 (397)
                      +|+.|++++ +.+..+|..   +++|+.|++++| .+..+|   ..+++|+.|++++|.++.++.
T Consensus       202 ~L~~L~L~~-N~l~~l~~~---~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~L~~lp~  258 (622)
T 3g06_A          202 ELYKLWAYN-NRLTSLPAL---PSGLKELIVSGN-RLTSLP---VLPSELKELMVSGNRLTSLPM  258 (622)
T ss_dssp             TCCEEECCS-SCCSSCCCC---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC
T ss_pred             hhhEEECcC-CcccccCCC---CCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCCCCCcCCc
Confidence            344444444 334444432   366777888774 666676   445678888888888776554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.10  E-value=3.7e-10  Score=117.19  Aligned_cols=91  Identities=19%  Similarity=0.242  Sum_probs=49.7

Q ss_pred             CccCCCCCCCCEEEeeCCCCC--cCCccccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccCC-cccC
Q 015983           49 PEKTSSKDQLLEIHLEGTAIR--GLPASIELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNAP-ETLG  124 (397)
Q Consensus        49 P~~l~~l~~L~~L~Ls~~~i~--~lP~si~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~lP-~~~~  124 (397)
                      |..+..+++|+.|+|++|.+.  .+|..+..+++|+.|+|++ +.+..+ |..+.++++|++|+|++| ++..+| ..++
T Consensus       462 ~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~-N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~  539 (635)
T 4g8a_A          462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYK  539 (635)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGT
T ss_pred             ccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC-CccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHh
Confidence            334455556666666665432  2445556666666666665 344444 445556666666666663 344443 3455


Q ss_pred             CCCCCcEEECCCCcccc
Q 015983          125 KVESLESAVETVTKFAK  141 (397)
Q Consensus       125 ~L~~L~~L~ls~n~~~~  141 (397)
                      .+++|+.|++++|+++.
T Consensus       540 ~l~~L~~L~Ls~N~l~~  556 (635)
T 4g8a_A          540 CLNSLQVLDYSLNHIMT  556 (635)
T ss_dssp             TCTTCCEEECTTSCCCB
T ss_pred             CCCCCCEEECCCCcCCC
Confidence            56666666666665544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.07  E-value=5.6e-10  Score=100.13  Aligned_cols=103  Identities=18%  Similarity=0.259  Sum_probs=88.7

Q ss_pred             eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCC-hhccC
Q 015983           23 QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLP-STING  101 (397)
Q Consensus        23 ~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP-~~i~~  101 (397)
                      .++++++.++++|..+                .++|++|+|++|.|+.+|..+..+++|+.|+|++ +.+..++ ..+.+
T Consensus        14 ~l~~~~~~l~~ip~~~----------------~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~   76 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGI----------------PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSN   76 (193)
T ss_dssp             EEECTTSCCSSCCSCC----------------CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred             EEEcCCCCCCcCCCCC----------------CCCCCEEECCCCcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccC
Confidence            3788889999888643                1479999999999999999999999999999999 6788886 46899


Q ss_pred             CCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCcccccc
Q 015983          102 LRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus       102 L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      +++|++|+|++| .+..+| ..+..+++|+.|++++|.++.++
T Consensus        77 l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~  118 (193)
T 2wfh_A           77 MTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVP  118 (193)
T ss_dssp             CTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence            999999999995 666665 56899999999999999987654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.05  E-value=5.4e-10  Score=121.72  Aligned_cols=131  Identities=21%  Similarity=0.241  Sum_probs=78.8

Q ss_pred             EeccCCCCCccCCCcc----eEEeecCCcccc-chhhhhhhccc----------ccc-CccCCCCCCCCEEEeeCCCCCc
Q 015983            7 LVLSGCLKLKKFPDIV----QVLWDGTDIREL-SFAIELLFRLV----------QEF-PEKTSSKDQLLEIHLEGTAIRG   70 (397)
Q Consensus         7 L~LsgC~~L~~lP~~~----~L~Ls~n~l~~L-p~si~~L~~L~----------~~~-P~~l~~l~~L~~L~Ls~~~i~~   70 (397)
                      .+.+++ .++.+|.+.    .|+|++|.|+.+ |..+.++++|+          ..+ |..+.++++|++|+|++|.|+.
T Consensus         9 ~dcs~~-~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~   87 (844)
T 3j0a_A            9 AFYRFC-NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF   87 (844)
T ss_dssp             EEESCC-CSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred             EEccCC-CCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence            344444 455555421    166666666654 34455555554          122 5556777777777777777775


Q ss_pred             C-CccccCCCCCCEEEecCCCCCCC-CChh--ccCCCcCceeeeecccCCccC-C-cccCCCCCCcEEECCCCccc
Q 015983           71 L-PASIELLSGNVLLNLKDRKNLKS-LPST--INGLRCLRMLHLSGCSKLKNA-P-ETLGKVESLESAVETVTKFA  140 (397)
Q Consensus        71 l-P~si~~L~~L~~L~Ls~c~~l~~-LP~~--i~~L~sL~~L~Ls~C~~L~~l-P-~~~~~L~~L~~L~ls~n~~~  140 (397)
                      + |..++.+++|+.|+|++| .+.. +|..  +.++++|++|+|++| .+..+ | ..++++++|+.|++++|.++
T Consensus        88 ~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           88 LHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             ECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             cCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCC
Confidence            5 566777777777777774 4433 4443  667777777777774 33333 2 35667777777777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.04  E-value=2.1e-10  Score=123.17  Aligned_cols=94  Identities=22%  Similarity=0.206  Sum_probs=82.6

Q ss_pred             cCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCC
Q 015983           48 FPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVE  127 (397)
Q Consensus        48 ~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~  127 (397)
                      .|..+..+++|+.|+|++|.|..+|..+..+++|+.|+|++ |.+..+|..+++|++|++|+|++| .+..+|..++.|+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~  293 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNG-NSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF  293 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTT-SCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeC-CcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence            45667889999999999999999999999999999999999 688899999999999999999995 6779999999999


Q ss_pred             CCcEEECCCCcccccc
Q 015983          128 SLESAVETVTKFAKAE  143 (397)
Q Consensus       128 ~L~~L~ls~n~~~~L~  143 (397)
                      +|+.|++++|.++.++
T Consensus       294 ~L~~L~L~~N~l~~lp  309 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLP  309 (727)
T ss_dssp             TCSEEECCSSCCCCCC
T ss_pred             CCCEEECCCCCCCccC
Confidence            9999999999988765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.04  E-value=9.7e-10  Score=119.67  Aligned_cols=110  Identities=16%  Similarity=0.179  Sum_probs=56.6

Q ss_pred             CCCcEEeccCCCCCcc--------CCCcceEEeecC-Ccccc-chhhhhhhccc----------cccCccCCCCCCCCEE
Q 015983            2 KSLKTLVLSGCLKLKK--------FPDIVQVLWDGT-DIREL-SFAIELLFRLV----------QEFPEKTSSKDQLLEI   61 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~--------lP~~~~L~Ls~n-~l~~L-p~si~~L~~L~----------~~~P~~l~~l~~L~~L   61 (397)
                      ++|+.|+|++|. ++.        ++.+..|+|++| .+..+ |..+.+|++|+          ...|..++++++|++|
T Consensus        24 ~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           24 NTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             TTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            456666666652 222        222233666665 23344 34455555444          2235555666666666


Q ss_pred             EeeCCCCCc-CCcc--ccCCCCCCEEEecCCCCCCCC--ChhccCCCcCceeeeecc
Q 015983           62 HLEGTAIRG-LPAS--IELLSGNVLLNLKDRKNLKSL--PSTINGLRCLRMLHLSGC  113 (397)
Q Consensus        62 ~Ls~~~i~~-lP~s--i~~L~~L~~L~Ls~c~~l~~L--P~~i~~L~sL~~L~Ls~C  113 (397)
                      +|++|.++. +|..  ++.+++|+.|+|++ +.+..+  +..++++++|++|+|++|
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSK-NQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEES-CCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCC-CcccccccchhHhhCCCCCEEECCCC
Confidence            666666653 3333  55666666666665 344433  234556666666666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.01  E-value=1.2e-09  Score=97.61  Aligned_cols=102  Identities=19%  Similarity=0.256  Sum_probs=86.7

Q ss_pred             eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc--ccCCCCCCEEEecCCCCCCCC-Chhc
Q 015983           23 QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS--IELLSGNVLLNLKDRKNLKSL-PSTI   99 (397)
Q Consensus        23 ~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s--i~~L~~L~~L~Ls~c~~l~~L-P~~i   99 (397)
                      .|+++++.++++|..+.                .+|++|+|++|.|+.+|..  ++.+++|+.|+|++ +.+..+ |..+
T Consensus        12 ~l~~s~~~l~~ip~~~~----------------~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~   74 (192)
T 1w8a_A           12 TVDCTGRGLKEIPRDIP----------------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAF   74 (192)
T ss_dssp             EEECTTSCCSSCCSCCC----------------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTT
T ss_pred             EEEcCCCCcCcCccCCC----------------CCCCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHc
Confidence            48899999998886531                2799999999999999864  89999999999999 577777 7789


Q ss_pred             cCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCccccc
Q 015983          100 NGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFAKA  142 (397)
Q Consensus       100 ~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~~L  142 (397)
                      .++++|++|+|++| .+..++ ..+..+++|+.|++++|.++.+
T Consensus        75 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  117 (192)
T 1w8a_A           75 EGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCV  117 (192)
T ss_dssp             TTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence            99999999999995 566654 5588999999999999988764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.00  E-value=5.9e-10  Score=98.01  Aligned_cols=110  Identities=17%  Similarity=0.152  Sum_probs=90.6

Q ss_pred             CCCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCCh
Q 015983           18 FPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPS   97 (397)
Q Consensus        18 lP~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~   97 (397)
                      .+.+..|++++|.++.+|. +.             ...++|++|+|++|.|+.+ ..++.+++|+.|+|++ +.+..+|.
T Consensus        18 ~~~L~~L~l~~n~l~~i~~-~~-------------~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~-N~l~~~~~   81 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIEN-LG-------------ATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNN-NRICRIGE   81 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCC-GG-------------GGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCS-SCCCEECS
T ss_pred             cCCceEEEeeCCCCchhHH-hh-------------hcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCC-CcccccCc
Confidence            3445559999999988753 21             1234899999999999988 6789999999999999 68888886


Q ss_pred             hc-cCCCcCceeeeecccCCccCCc--ccCCCCCCcEEECCCCccccccc
Q 015983           98 TI-NGLRCLRMLHLSGCSKLKNAPE--TLGKVESLESAVETVTKFAKAEL  144 (397)
Q Consensus        98 ~i-~~L~sL~~L~Ls~C~~L~~lP~--~~~~L~~L~~L~ls~n~~~~L~~  144 (397)
                      .+ ..+++|++|++++| .+..+|.  .+..+++|+.|++++|.++.++.
T Consensus        82 ~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~  130 (176)
T 1a9n_A           82 GLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKH  130 (176)
T ss_dssp             CHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             chhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence            54 88999999999995 7788887  78899999999999999876553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.99  E-value=9.8e-10  Score=107.28  Aligned_cols=140  Identities=16%  Similarity=0.136  Sum_probs=90.7

Q ss_pred             CCCcEEeccCCCCCccCCC--------cceEEeecCCcc-ccchh-hhhhhccc-----------cccCccCCCCCCCCE
Q 015983            2 KSLKTLVLSGCLKLKKFPD--------IVQVLWDGTDIR-ELSFA-IELLFRLV-----------QEFPEKTSSKDQLLE   60 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP~--------~~~L~Ls~n~l~-~Lp~s-i~~L~~L~-----------~~~P~~l~~l~~L~~   60 (397)
                      ++|+.|+|++| +++.+|.        +..|+|++|.+. .+|.. +.+|+++.           ...|..+..+++|++
T Consensus        30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            47899999997 5666654        333999999875 46653 45565543           223567788999999


Q ss_pred             EEeeCCCCCcCCcc-ccCCC--------------------------CCCEEEecCCCCCCCCChhccCCCcCceeeeecc
Q 015983           61 IHLEGTAIRGLPAS-IELLS--------------------------GNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGC  113 (397)
Q Consensus        61 L~Ls~~~i~~lP~s-i~~L~--------------------------~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C  113 (397)
                      |++++|.|+.+|.. +....                          .|+.|+|++ +.++.+|..+....+|+.|+++++
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDN  187 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEECTTC
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccchhHHhhccC
Confidence            99999988876642 22222                          344555555 455555555445556666666666


Q ss_pred             cCCccCCc-ccCCCCCCcEEECCCCcccccc
Q 015983          114 SKLKNAPE-TLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus       114 ~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      +.++.+|. .+..+++|+.|++++|+++.++
T Consensus       188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp  218 (350)
T 4ay9_X          188 NNLEELPNDVFHGASGPVILDISRTRIHSLP  218 (350)
T ss_dssp             TTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred             CcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence            66666664 4566667777777777665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.98  E-value=2.7e-09  Score=94.15  Aligned_cols=101  Identities=17%  Similarity=0.265  Sum_probs=83.6

Q ss_pred             CcEEeccCCCCCccCCCcc-----eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc-ccC
Q 015983            4 LKTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS-IEL   77 (397)
Q Consensus         4 L~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s-i~~   77 (397)
                      -+.++++++ .++.+|...     .|+|++|.|+.+++.             .+..+++|++|+|++|.|+.+|.. +..
T Consensus        14 ~~~l~~~~n-~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~-------------~~~~l~~L~~L~Ls~N~l~~i~~~~~~~   79 (174)
T 2r9u_A           14 QTLVNCQNI-RLASVPAGIPTDKQRLWLNNNQITKLEPG-------------VFDHLVNLQQLYFNSNKLTAIPTGVFDK   79 (174)
T ss_dssp             SSEEECCSS-CCSSCCSCCCTTCSEEECCSSCCCCCCTT-------------TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CcEEEeCCC-CCCccCCCcCCCCcEEEeCCCCccccCHH-------------HhcCCcCCCEEECCCCCCCccChhHhCC
Confidence            367899987 678888643     399999999987542             347788999999999999999986 589


Q ss_pred             CCCCCEEEecCCCCCCCCChh-ccCCCcCceeeeecccCCccCC
Q 015983           78 LSGNVLLNLKDRKNLKSLPST-INGLRCLRMLHLSGCSKLKNAP  120 (397)
Q Consensus        78 L~~L~~L~Ls~c~~l~~LP~~-i~~L~sL~~L~Ls~C~~L~~lP  120 (397)
                      +++|+.|+|++ |.+..+|.. +..+++|++|+|++| .+...+
T Consensus        80 l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~  121 (174)
T 2r9u_A           80 LTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNN-PWDCEC  121 (174)
T ss_dssp             CTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS-CBCTTB
T ss_pred             cchhhEEECCC-CccceeCHHHhccccCCCEEEeCCC-Cccccc
Confidence            99999999999 789999875 889999999999995 454444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.97  E-value=2.2e-09  Score=94.14  Aligned_cols=95  Identities=25%  Similarity=0.329  Sum_probs=80.9

Q ss_pred             CcEEeccCCCCCccCCCcc-----eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc-ccC
Q 015983            4 LKTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS-IEL   77 (397)
Q Consensus         4 L~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s-i~~   77 (397)
                      .+.|+++++ .++.+|...     .|+|++|.|+.+++.             .+..+++|++|+|++|.|+.+|.. +..
T Consensus        11 ~~~l~~s~n-~l~~ip~~~~~~l~~L~L~~N~i~~~~~~-------------~~~~l~~L~~L~Ls~N~l~~l~~~~f~~   76 (170)
T 3g39_A           11 GTTVDCSGK-SLASVPTGIPTTTQVLYLYDNQITKLEPG-------------VFDRLTQLTRLDLDNNQLTVLPAGVFDK   76 (170)
T ss_dssp             TTEEECTTS-CCSSCCSCCCTTCSEEECCSSCCCCCCTT-------------TTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CCEEEeCCC-CcCccCccCCCCCcEEEcCCCcCCccChh-------------hhcCcccCCEEECCCCCcCccChhhccC
Confidence            578999997 678888533     399999999987543             246788999999999999999876 589


Q ss_pred             CCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecc
Q 015983           78 LSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGC  113 (397)
Q Consensus        78 L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C  113 (397)
                      +++|+.|+|++ |.+..+|. .+..+++|++|+|++|
T Consensus        77 l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           77 LTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             CTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCC
Confidence            99999999999 68998876 5889999999999995

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.91  E-value=1.5e-10  Score=111.44  Aligned_cols=137  Identities=12%  Similarity=0.104  Sum_probs=90.1

Q ss_pred             CCCcEEeccCCCCCc------cCCCcceEEeecCCccc--cchhhhhhhccc----------cccCccCCCCCCCCEEEe
Q 015983            2 KSLKTLVLSGCLKLK------KFPDIVQVLWDGTDIRE--LSFAIELLFRLV----------QEFPEKTSSKDQLLEIHL   63 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~------~lP~~~~L~Ls~n~l~~--Lp~si~~L~~L~----------~~~P~~l~~l~~L~~L~L   63 (397)
                      ++|+.|++++|..-+      .++.+..|+|++|.++.  +|..+..+++|+          ...|..+..+++|++|+|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            456777777763222      22334447777777653  555555555554          234455666788888888


Q ss_pred             eCC-CCC--cCCccccCCCCCCEEEecCCCCCCC--CChhccCCC-cCceeeeeccc-CC--ccCCcccCCCCCCcEEEC
Q 015983           64 EGT-AIR--GLPASIELLSGNVLLNLKDRKNLKS--LPSTINGLR-CLRMLHLSGCS-KL--KNAPETLGKVESLESAVE  134 (397)
Q Consensus        64 s~~-~i~--~lP~si~~L~~L~~L~Ls~c~~l~~--LP~~i~~L~-sL~~L~Ls~C~-~L--~~lP~~~~~L~~L~~L~l  134 (397)
                      ++| .++  .+|..+..+++|+.|++++|..+..  +|..+..++ +|++|++++|. .+  ..+|..+..+++|+.|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            887 676  3666677788888888888646654  566677777 88888888864 23  445666667778888888


Q ss_pred             CCCc
Q 015983          135 TVTK  138 (397)
Q Consensus       135 s~n~  138 (397)
                      ++|.
T Consensus       230 ~~~~  233 (336)
T 2ast_B          230 SDSV  233 (336)
T ss_dssp             TTCT
T ss_pred             CCCC
Confidence            8876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.90  E-value=4.2e-10  Score=111.02  Aligned_cols=137  Identities=17%  Similarity=0.149  Sum_probs=79.3

Q ss_pred             CCCcEEeccCCC-----------CCccCCCcceEEeecCCcc----ccchhh-------hhhhccc--------------
Q 015983            2 KSLKTLVLSGCL-----------KLKKFPDIVQVLWDGTDIR----ELSFAI-------ELLFRLV--------------   45 (397)
Q Consensus         2 ~sL~~L~LsgC~-----------~L~~lP~~~~L~Ls~n~l~----~Lp~si-------~~L~~L~--------------   45 (397)
                      ++|+.|+|++|.           .+..++.+..|+|++|.+.    .+|..+       ..+++|+              
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            467777777762           2455666666777665444    233333       2333333              


Q ss_pred             cccCccCCCCCCCCEEEeeCCCCCc-----CCccccCC---------CCCCEEEecCCCCCC--CCC---hhccCCCcCc
Q 015983           46 QEFPEKTSSKDQLLEIHLEGTAIRG-----LPASIELL---------SGNVLLNLKDRKNLK--SLP---STINGLRCLR  106 (397)
Q Consensus        46 ~~~P~~l~~l~~L~~L~Ls~~~i~~-----lP~si~~L---------~~L~~L~Ls~c~~l~--~LP---~~i~~L~sL~  106 (397)
                      ..+|..+..+++|++|+|++|.++.     ++..+..+         ++|+.|+|++| .+.  .+|   ..+..+++|+
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcC
Confidence            1244455666777777777777752     23333334         67777777773 453  344   3455667777


Q ss_pred             eeeeecccCCc------cCCcccCCCCCCcEEECCCCccc
Q 015983          107 MLHLSGCSKLK------NAPETLGKVESLESAVETVTKFA  140 (397)
Q Consensus       107 ~L~Ls~C~~L~------~lP~~~~~L~~L~~L~ls~n~~~  140 (397)
                      +|++++| .+.      .+|..+..+++|+.|++++|.++
T Consensus       191 ~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~  229 (386)
T 2ca6_A          191 TVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  229 (386)
T ss_dssp             EEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             EEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence            7777775 343      23335566777777777777663

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.89  E-value=3.5e-11  Score=108.03  Aligned_cols=103  Identities=20%  Similarity=0.219  Sum_probs=76.5

Q ss_pred             cceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhcc
Q 015983           21 IVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTIN  100 (397)
Q Consensus        21 ~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~  100 (397)
                      +..|+|++|.++.+| .+              ..+++|++|+|++|.|+.+|..+..+++|+.|+|++ +.+..+| .+.
T Consensus        50 L~~L~ls~n~l~~l~-~~--------------~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~-N~l~~l~-~~~  112 (198)
T 1ds9_A           50 CKHLALSTNNIEKIS-SL--------------SGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLS-GIE  112 (198)
T ss_dssp             CSEEECSEEEESCCC-CH--------------HHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-EECCCHH-HHH
T ss_pred             CCEEECCCCCCcccc-cc--------------ccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-CcCCcCC-ccc
Confidence            333666666666655 33              445678888888888888888777778888888888 5777777 477


Q ss_pred             CCCcCceeeeecccCCccCCc--ccCCCCCCcEEECCCCcccc
Q 015983          101 GLRCLRMLHLSGCSKLKNAPE--TLGKVESLESAVETVTKFAK  141 (397)
Q Consensus       101 ~L~sL~~L~Ls~C~~L~~lP~--~~~~L~~L~~L~ls~n~~~~  141 (397)
                      .+++|++|++++| .+..+|.  .+..+++|+.|++++|.+..
T Consensus       113 ~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          113 KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             cCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            7888888888884 5666654  56788888888888887644

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.88  E-value=1.3e-08  Score=89.29  Aligned_cols=103  Identities=19%  Similarity=0.355  Sum_probs=86.3

Q ss_pred             eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hcc
Q 015983           23 QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TIN  100 (397)
Q Consensus        23 ~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~  100 (397)
                      .++++++.++.+|..+                .++|++|+|++|.++.+|.. ++.+++|+.|+|++ +.+..+|. .+.
T Consensus        11 ~l~~~~~~l~~~p~~~----------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~   73 (177)
T 2o6r_A           11 EIRCNSKGLTSVPTGI----------------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFD   73 (177)
T ss_dssp             EEECCSSCCSSCCTTC----------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTT
T ss_pred             EEEecCCCCccCCCCC----------------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCC-CcceEeChhHcc
Confidence            4788888888887543                25799999999999998865 68999999999999 68888876 468


Q ss_pred             CCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcccccc
Q 015983          101 GLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus       101 ~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      .+++|++|++++| .+..+|. .+..+++|+.|++++|.++.++
T Consensus        74 ~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  116 (177)
T 2o6r_A           74 KLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVP  116 (177)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCCcceEeC
Confidence            9999999999995 6777765 4688999999999999887654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.86  E-value=6.3e-10  Score=109.76  Aligned_cols=139  Identities=17%  Similarity=0.182  Sum_probs=101.3

Q ss_pred             CCCCcEEeccCCCCC-----------ccCCCcceEEeecCCccc-----cchhhhhh---------hccc----------
Q 015983            1 MKSLKTLVLSGCLKL-----------KKFPDIVQVLWDGTDIRE-----LSFAIELL---------FRLV----------   45 (397)
Q Consensus         1 L~sL~~L~LsgC~~L-----------~~lP~~~~L~Ls~n~l~~-----Lp~si~~L---------~~L~----------   45 (397)
                      +++|++|+|++|..-           ..+|.+..|+|++|.++.     ++..+..+         ++|+          
T Consensus        93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~  172 (386)
T 2ca6_A           93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  172 (386)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence            467889999988432           245888889999988863     33333333         4444          


Q ss_pred             -cccC---ccCCCCCCCCEEEeeCCCCC------cCCccccCCCCCCEEEecCCCCC-----CCCChhccCCCcCceeee
Q 015983           46 -QEFP---EKTSSKDQLLEIHLEGTAIR------GLPASIELLSGNVLLNLKDRKNL-----KSLPSTINGLRCLRMLHL  110 (397)
Q Consensus        46 -~~~P---~~l~~l~~L~~L~Ls~~~i~------~lP~si~~L~~L~~L~Ls~c~~l-----~~LP~~i~~L~sL~~L~L  110 (397)
                       ..+|   ..+..+++|++|+|++|.|+      -+|..+..+++|+.|+|++| .+     ..+|..+..+++|++|+|
T Consensus       173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L  251 (386)
T 2ca6_A          173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGL  251 (386)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEEC
Confidence             1223   34556789999999999998      24447888999999999984 56     567888889999999999


Q ss_pred             ecccCCcc-----CCccc--CCCCCCcEEECCCCcccc
Q 015983          111 SGCSKLKN-----APETL--GKVESLESAVETVTKFAK  141 (397)
Q Consensus       111 s~C~~L~~-----lP~~~--~~L~~L~~L~ls~n~~~~  141 (397)
                      ++|. +..     +|..+  +.+++|+.|++++|.++.
T Consensus       252 ~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          252 NDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             TTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             CCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            9964 433     45555  448889999999998876

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.86  E-value=9.6e-11  Score=105.10  Aligned_cols=122  Identities=19%  Similarity=0.219  Sum_probs=95.0

Q ss_pred             CCCCcEEeccCCCCCccCCCc------ceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc
Q 015983            1 MKSLKTLVLSGCLKLKKFPDI------VQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS   74 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP~~------~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s   74 (397)
                      +++|+.|+|++| .++.+|.+      ..|++++|.++.+|..+..              +++|++|+|++|.++.+| .
T Consensus        47 l~~L~~L~ls~n-~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~--------------~~~L~~L~L~~N~l~~l~-~  110 (198)
T 1ds9_A           47 LKACKHLALSTN-NIEKISSLSGMENLRILSLGRNLIKKIENLDAV--------------ADTLEELWISYNQIASLS-G  110 (198)
T ss_dssp             TTTCSEEECSEE-EESCCCCHHHHTTCCEEEEEEEEECSCSSHHHH--------------HHHCSEEEEEEEECCCHH-H
T ss_pred             CCCCCEEECCCC-CCccccccccCCCCCEEECCCCCcccccchhhc--------------CCcCCEEECcCCcCCcCC-c
Confidence            568999999998 56667633      2399999999988876543              456899999999999988 6


Q ss_pred             ccCCCCCCEEEecCCCCCCCCCh--hccCCCcCceeeeecccCCccCCc----------ccCCCCCCcEEECCCCcccc
Q 015983           75 IELLSGNVLLNLKDRKNLKSLPS--TINGLRCLRMLHLSGCSKLKNAPE----------TLGKVESLESAVETVTKFAK  141 (397)
Q Consensus        75 i~~L~~L~~L~Ls~c~~l~~LP~--~i~~L~sL~~L~Ls~C~~L~~lP~----------~~~~L~~L~~L~ls~n~~~~  141 (397)
                      +..+++|+.|++++ +.+..+|.  .+..+++|++|++++|.....+|.          .+..+++|+.|+  ++.++.
T Consensus       111 ~~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          111 IEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             cccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            88899999999999 67888765  788999999999999744333333          256778888775  555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.84  E-value=1.1e-08  Score=99.33  Aligned_cols=101  Identities=16%  Similarity=0.117  Sum_probs=80.9

Q ss_pred             EEeecC-CccccchhhhhhhccccccCccCCCCCCCCEEEeeC-CCCCcCC-ccccCCCCCCEEEecCCCCCCCCCh-hc
Q 015983           24 VLWDGT-DIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEG-TAIRGLP-ASIELLSGNVLLNLKDRKNLKSLPS-TI   99 (397)
Q Consensus        24 L~Ls~n-~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~-~~i~~lP-~si~~L~~L~~L~Ls~c~~l~~LP~-~i   99 (397)
                      ++++++ .|+.+|. |              ..+++|++|+|++ |.|+.+| ..|+.|++|+.|+|++ |.+..+|. .+
T Consensus        13 v~~~~~n~l~~ip~-l--------------~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~   76 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-L--------------PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAF   76 (347)
T ss_dssp             EECCSSCCCTTTTT-S--------------CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGG
T ss_pred             EEcCCCCCCCccCC-C--------------CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHh
Confidence            566665 6776664 4              6778899999996 9999988 4699999999999999 57887754 78


Q ss_pred             cCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983          100 NGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus       100 ~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~  141 (397)
                      .+|++|++|+|++ +.+..+|........|+.|++.+|.+.-
T Consensus        77 ~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           77 HFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             GSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             cCCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeCCCccC
Confidence            9999999999999 5788888654333349999999998763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.84  E-value=3.9e-10  Score=108.59  Aligned_cols=134  Identities=17%  Similarity=0.161  Sum_probs=84.4

Q ss_pred             CcEEeccCCCCC----ccC--CCcceEEeecCCccccchhhhhhhccc-----------cccCccCCCCCCCCEEEeeCC
Q 015983            4 LKTLVLSGCLKL----KKF--PDIVQVLWDGTDIRELSFAIELLFRLV-----------QEFPEKTSSKDQLLEIHLEGT   66 (397)
Q Consensus         4 L~~L~LsgC~~L----~~l--P~~~~L~Ls~n~l~~Lp~si~~L~~L~-----------~~~P~~l~~l~~L~~L~Ls~~   66 (397)
                      ++.|+|+++..-    ..+  +.+..|++++|.+...+..+..+++|+           ..+|..+..+++|++|+|++|
T Consensus        49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~  128 (336)
T 2ast_B           49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL  128 (336)
T ss_dssp             SSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred             heeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc
Confidence            566777765321    111  344447777777766555554455444           125556667777777777777


Q ss_pred             CCC-cCCccccCCCCCCEEEecCCCCCC--CCChhccCCCcCceeeeecccCCcc--CCcccCCCC-CCcEEECCCC
Q 015983           67 AIR-GLPASIELLSGNVLLNLKDRKNLK--SLPSTINGLRCLRMLHLSGCSKLKN--APETLGKVE-SLESAVETVT  137 (397)
Q Consensus        67 ~i~-~lP~si~~L~~L~~L~Ls~c~~l~--~LP~~i~~L~sL~~L~Ls~C~~L~~--lP~~~~~L~-~L~~L~ls~n  137 (397)
                      .++ ..|..+..+++|+.|+|++|..+.  .+|..+.++++|++|++++|..+..  ++..+..++ +|+.|++++|
T Consensus       129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            766 456667777777777777765555  2566666777777777777644543  455566667 7777777777

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.76  E-value=2.2e-08  Score=97.69  Aligned_cols=137  Identities=10%  Similarity=0.054  Sum_probs=103.4

Q ss_pred             cEEeccCCCCCccCCCc-----ceEEeecCCccccchh-hhhhhccc----------cccCc-cCCCCCCCCE-EEeeCC
Q 015983            5 KTLVLSGCLKLKKFPDI-----VQVLWDGTDIRELSFA-IELLFRLV----------QEFPE-KTSSKDQLLE-IHLEGT   66 (397)
Q Consensus         5 ~~L~LsgC~~L~~lP~~-----~~L~Ls~n~l~~Lp~s-i~~L~~L~----------~~~P~-~l~~l~~L~~-L~Ls~~   66 (397)
                      ++++.+++ .++++|..     ..|+|++|.|+.||.. +.+|++|+          +.+|. .+.++++|.+ +.+.+|
T Consensus        12 ~~v~C~~~-~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           12 RVFLCQES-KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             TEEEEEST-TCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             CEEEecCC-CCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            45666664 68888753     3399999999999974 67777766          33443 4677888775 566778


Q ss_pred             CCCcCC-ccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCC-CCCcEEECCCCccccc
Q 015983           67 AIRGLP-ASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKV-ESLESAVETVTKFAKA  142 (397)
Q Consensus        67 ~i~~lP-~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L-~~L~~L~ls~n~~~~L  142 (397)
                      +|+.+| ..+..+++|+.|++++ +.+..+|. .+.....+..|++.+++.+..+|. .+..+ ..|+.|++++|.++.+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             cccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            999885 5689999999999999 67888875 445667788999998888998875 34444 3588899999988765


Q ss_pred             c
Q 015983          143 E  143 (397)
Q Consensus       143 ~  143 (397)
                      +
T Consensus       170 ~  170 (350)
T 4ay9_X          170 H  170 (350)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.56  E-value=1.7e-08  Score=98.83  Aligned_cols=137  Identities=14%  Similarity=0.108  Sum_probs=93.7

Q ss_pred             CCCcEEeccCCCCC-----------ccC-CCcceEEeecCCccccchh-hh--------hhhccc-----------cccC
Q 015983            2 KSLKTLVLSGCLKL-----------KKF-PDIVQVLWDGTDIRELSFA-IE--------LLFRLV-----------QEFP   49 (397)
Q Consensus         2 ~sL~~L~LsgC~~L-----------~~l-P~~~~L~Ls~n~l~~Lp~s-i~--------~L~~L~-----------~~~P   49 (397)
                      ++|++|+|++|..-           ..+ +.+..|+|++|.++..+.. +.        .|+.|.           ..++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            67999999998421           122 5666699999998876642 22        222222           1333


Q ss_pred             ccCCCCC-CCCEEEeeCCCCCcCCc-----cccCC-CCCCEEEecCCCCCCC-----CChhccCC-CcCceeeeecccCC
Q 015983           50 EKTSSKD-QLLEIHLEGTAIRGLPA-----SIELL-SGNVLLNLKDRKNLKS-----LPSTINGL-RCLRMLHLSGCSKL  116 (397)
Q Consensus        50 ~~l~~l~-~L~~L~Ls~~~i~~lP~-----si~~L-~~L~~L~Ls~c~~l~~-----LP~~i~~L-~sL~~L~Ls~C~~L  116 (397)
                      +.+..++ +|++|+|++|.|+..+.     .+..+ ++|+.|+|++ +.+..     ++..+..+ ++|++|+|++| .+
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l  237 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA-NLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CL  237 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT-SCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CC
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC-CCCChhHHHHHHHHHhcCCCCceEEECcCC-CC
Confidence            4444454 89999999999986553     34455 5999999998 56776     66666664 58999999995 56


Q ss_pred             ccCC-----cccCCCCCCcEEECCCCccc
Q 015983          117 KNAP-----ETLGKVESLESAVETVTKFA  140 (397)
Q Consensus       117 ~~lP-----~~~~~L~~L~~L~ls~n~~~  140 (397)
                      ...+     ..+..++.|+.|++++|.+.
T Consensus       238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~  266 (362)
T 3goz_A          238 HGPSLENLKLLKDSLKHLQTVYLDYDIVK  266 (362)
T ss_dssp             CCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred             CcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence            5543     34577888999999998744

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.56  E-value=2.1e-08  Score=98.19  Aligned_cols=84  Identities=17%  Similarity=0.166  Sum_probs=46.5

Q ss_pred             CCCCEEEeeCCCCCcCCcc-----ccC-CCCCCEEEecCCCCCC-----CCChhccCCC-cCceeeeecccCCccCC-c-
Q 015983           56 DQLLEIHLEGTAIRGLPAS-----IEL-LSGNVLLNLKDRKNLK-----SLPSTINGLR-CLRMLHLSGCSKLKNAP-E-  121 (397)
Q Consensus        56 ~~L~~L~Ls~~~i~~lP~s-----i~~-L~~L~~L~Ls~c~~l~-----~LP~~i~~L~-sL~~L~Ls~C~~L~~lP-~-  121 (397)
                      ++|++|+|++|.|+..+..     +.. .++|+.|+|++ +.+.     .++..+..++ +|++|+|++| .+...+ . 
T Consensus       109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~  186 (362)
T 3goz_A          109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG-NDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAE  186 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT-SCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHH
T ss_pred             CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC-CcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHH
Confidence            5677777777777655432     233 24677777776 3454     3344444444 6777777764 333322 1 


Q ss_pred             ---ccCCC-CCCcEEECCCCcccc
Q 015983          122 ---TLGKV-ESLESAVETVTKFAK  141 (397)
Q Consensus       122 ---~~~~L-~~L~~L~ls~n~~~~  141 (397)
                         .+..+ ++|+.|++++|.++.
T Consensus       187 l~~~l~~~~~~L~~L~Ls~N~i~~  210 (362)
T 3goz_A          187 LAKFLASIPASVTSLDLSANLLGL  210 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHHHhCCCCCCEEECCCCCCCh
Confidence               22333 366666776666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.50  E-value=1.9e-07  Score=90.34  Aligned_cols=83  Identities=14%  Similarity=0.173  Sum_probs=72.6

Q ss_pred             CEEEeeCC-CCCcCCccccCCCCCCEEEecCCCCCCCCC-hhccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECC
Q 015983           59 LEIHLEGT-AIRGLPASIELLSGNVLLNLKDRKNLKSLP-STINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVET  135 (397)
Q Consensus        59 ~~L~Ls~~-~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP-~~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls  135 (397)
                      ..++++++ .++.+|. +..+++|+.|+|+++|.+..+| ..+.+|++|+.|+|++| .+..+| ..+..|++|+.|+++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCC
Confidence            46788888 9999999 9999999999999757899887 57999999999999996 566665 578999999999999


Q ss_pred             CCcccccc
Q 015983          136 VTKFAKAE  143 (397)
Q Consensus       136 ~n~~~~L~  143 (397)
                      +|.++.++
T Consensus        89 ~N~l~~~~   96 (347)
T 2ifg_A           89 FNALESLS   96 (347)
T ss_dssp             SSCCSCCC
T ss_pred             CCccceeC
Confidence            99988765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.44  E-value=2.3e-08  Score=100.15  Aligned_cols=65  Identities=18%  Similarity=0.150  Sum_probs=31.4

Q ss_pred             cCccCCCCCCCCEEEeeCCCCCcC-----Ccccc-CCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeecc
Q 015983           48 FPEKTSSKDQLLEIHLEGTAIRGL-----PASIE-LLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGC  113 (397)
Q Consensus        48 ~P~~l~~l~~L~~L~Ls~~~i~~l-----P~si~-~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C  113 (397)
                      ++..+..+++|++|+|++|.++..     ...+. ..++|+.|+|++| .+..     +|..+..+++|++|++++|
T Consensus       276 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  351 (461)
T 1z7x_W          276 LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN  351 (461)
T ss_dssp             HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC
Confidence            344444455666666666655421     11111 2245666666653 3332     3444445555666666554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.43  E-value=3e-08  Score=99.40  Aligned_cols=138  Identities=22%  Similarity=0.190  Sum_probs=84.0

Q ss_pred             CCCcEEeccCCCCCc-----------cCCCcceEEeecCCccccc-hhhh--------hhhccc-----------cccCc
Q 015983            2 KSLKTLVLSGCLKLK-----------KFPDIVQVLWDGTDIRELS-FAIE--------LLFRLV-----------QEFPE   50 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~-----------~lP~~~~L~Ls~n~l~~Lp-~si~--------~L~~L~-----------~~~P~   50 (397)
                      ++|++|+|++|..-.           .+|.+..|+|++|.+.... ..+.        .|+.|.           ..++.
T Consensus       142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  221 (461)
T 1z7x_W          142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG  221 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred             CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence            368888888884221           2466666888888776432 1221        233222           12455


Q ss_pred             cCCCCCCCCEEEeeCCCCCcC-----Cc-cccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeecccCCcc-
Q 015983           51 KTSSKDQLLEIHLEGTAIRGL-----PA-SIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCSKLKN-  118 (397)
Q Consensus        51 ~l~~l~~L~~L~Ls~~~i~~l-----P~-si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~~L~~-  118 (397)
                      .+..+++|++|+|++|.++..     .. .+..+++|+.|++++| .+..     +|..+..+++|++|++++| .+.. 
T Consensus       222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~  299 (461)
T 1z7x_W          222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDE  299 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHH
T ss_pred             HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchH
Confidence            556677888888888877642     12 2335778888888884 6665     6666777788888888875 3332 


Q ss_pred             ----CCccc-CCCCCCcEEECCCCcccc
Q 015983          119 ----APETL-GKVESLESAVETVTKFAK  141 (397)
Q Consensus       119 ----lP~~~-~~L~~L~~L~ls~n~~~~  141 (397)
                          +...+ ...++|+.|++++|.++.
T Consensus       300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~  327 (461)
T 1z7x_W          300 GARLLCETLLEPGCQLESLWVKSCSFTA  327 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HHHHHHHHhccCCccceeeEcCCCCCch
Confidence                22211 223567778887777653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.29  E-value=2.8e-07  Score=95.22  Aligned_cols=34  Identities=9%  Similarity=-0.039  Sum_probs=18.2

Q ss_pred             CCCCCCEEEeeCCCCCcCCccccCCCCCCEEEec
Q 015983           54 SKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLK   87 (397)
Q Consensus        54 ~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls   87 (397)
                      .+++|+.|+|++|.+..+|..+..+++|+.|+++
T Consensus       218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred             hCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence            4455566666555555555445555555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.23  E-value=5.4e-07  Score=93.09  Aligned_cols=113  Identities=14%  Similarity=0.013  Sum_probs=56.6

Q ss_pred             CCCCcEEeccCCCC-----------CccCCCcceEEeecCCcc-----ccchhhhhhhccc---------cccCccCCCC
Q 015983            1 MKSLKTLVLSGCLK-----------LKKFPDIVQVLWDGTDIR-----ELSFAIELLFRLV---------QEFPEKTSSK   55 (397)
Q Consensus         1 L~sL~~L~LsgC~~-----------L~~lP~~~~L~Ls~n~l~-----~Lp~si~~L~~L~---------~~~P~~l~~l   55 (397)
                      +++|++|+|++|..           ...+|.+..|+|++|.++     .++..+.++++|+         ..+|..+..+
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~  242 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA  242 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence            46778888887742           123455555777766664     2333333344443         2244444555


Q ss_pred             CCCCEEEeeCCCC----CcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeeccc
Q 015983           56 DQLLEIHLEGTAI----RGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCS  114 (397)
Q Consensus        56 ~~L~~L~Ls~~~i----~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~  114 (397)
                      ++|++|++++...    ...+..+..+++|+.|++++ .....+|..+..+++|++|++++|.
T Consensus       243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY-MGPNEMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETT-CCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred             hHHHhhcccccccccchHHHHHHhhccccccccCccc-cchhHHHHHHhhcCCCcEEecCCCc
Confidence            5666666653211    12233444555555555554 2334445544455555555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.21  E-value=3.2e-06  Score=81.37  Aligned_cols=85  Identities=14%  Similarity=0.170  Sum_probs=71.9

Q ss_pred             CCCCCEEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCc-eeeeecccCCccCC-cccCCCCCCc
Q 015983           55 KDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLR-MLHLSGCSKLKNAP-ETLGKVESLE  130 (397)
Q Consensus        55 l~~L~~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~-~L~Ls~C~~L~~lP-~~~~~L~~L~  130 (397)
                      +++|+.|+|++|.++.+|.. |..+++|+.|+|.+ + +..++. .+.++.+|+ .|.+.+  .+..++ ..+..+.+|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~-n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH-N-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc-c-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence            67899999999999999865 88999999999987 3 888865 788999999 999987  677776 5788999999


Q ss_pred             EEECCCCcccccc
Q 015983          131 SAVETVTKFAKAE  143 (397)
Q Consensus       131 ~L~ls~n~~~~L~  143 (397)
                      .+++++|.++.++
T Consensus       301 ~l~l~~n~i~~I~  313 (329)
T 3sb4_A          301 YVLATGDKITTLG  313 (329)
T ss_dssp             EEEECSSCCCEEC
T ss_pred             EEEeCCCccCccc
Confidence            9999888776654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.13  E-value=4.5e-07  Score=89.58  Aligned_cols=137  Identities=15%  Similarity=0.119  Sum_probs=79.9

Q ss_pred             CCCcEEeccCCCCCcc------------C-CCcceEEeecCCcccc-----chhhhhhhccc-----------cccCccC
Q 015983            2 KSLKTLVLSGCLKLKK------------F-PDIVQVLWDGTDIREL-----SFAIELLFRLV-----------QEFPEKT   52 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~------------l-P~~~~L~Ls~n~l~~L-----p~si~~L~~L~-----------~~~P~~l   52 (397)
                      ++|+.|+|++|. +..            - +.+..|+|++|.++..     ...+.+|+.|.           ..+...+
T Consensus        72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            468888888874 321            1 3444588888877631     11222233222           1111111


Q ss_pred             -CCCCCCCEEEeeCCCCCc-----CCccccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeecccCCcc---
Q 015983           53 -SSKDQLLEIHLEGTAIRG-----LPASIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCSKLKN---  118 (397)
Q Consensus        53 -~~l~~L~~L~Ls~~~i~~-----lP~si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~~L~~---  118 (397)
                       ...++|++|+|++|.|+.     ++..+..+++|+.|+|++ |.+..     ++..+...++|+.|+|++| .+..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~  228 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAA  228 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHH
Confidence             234667888888887763     444556677788888887 34543     3455566677888888875 3432   


Q ss_pred             --CCcccCCCCCCcEEECCCCcccc
Q 015983          119 --APETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus       119 --lP~~~~~L~~L~~L~ls~n~~~~  141 (397)
                        ++..+...++|+.|++++|.++.
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCCH
Confidence              33334455677888888887653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.09  E-value=1.2e-06  Score=90.38  Aligned_cols=36  Identities=19%  Similarity=0.193  Sum_probs=17.6

Q ss_pred             CCCCCCEEEeeCCCCCc-----CCccccCCCCCCEEEecCC
Q 015983           54 SKDQLLEIHLEGTAIRG-----LPASIELLSGNVLLNLKDR   89 (397)
Q Consensus        54 ~l~~L~~L~Ls~~~i~~-----lP~si~~L~~L~~L~Ls~c   89 (397)
                      .+++|++|+|++|.++.     ++.....+++|+.|++++|
T Consensus       154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~  194 (594)
T 2p1m_B          154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL  194 (594)
T ss_dssp             HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTC
T ss_pred             hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEeccc
Confidence            45556666666555432     2222224445555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.04  E-value=5.3e-07  Score=93.09  Aligned_cols=122  Identities=12%  Similarity=0.113  Sum_probs=72.3

Q ss_pred             CCCcEEeccCCCCCcc----------------------CCCcceEEeecCCcccc-chhhhhhhccccccCccCCCCCCC
Q 015983            2 KSLKTLVLSGCLKLKK----------------------FPDIVQVLWDGTDIREL-SFAIELLFRLVQEFPEKTSSKDQL   58 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~----------------------lP~~~~L~Ls~n~l~~L-p~si~~L~~L~~~~P~~l~~l~~L   58 (397)
                      ++|+.|+|++|..+..                      +|.+..|+|+++.++.. +..+.             ..+++|
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~-------------~~~~~L  132 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA-------------KSFKNF  132 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH-------------HHCTTC
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHH-------------HhCCCC
Confidence            5678888888754432                      33444477777665521 11111             135678


Q ss_pred             CEEEeeCC-CCCc--CCccccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeeccc-CC--ccCCcccCCCC
Q 015983           59 LEIHLEGT-AIRG--LPASIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCS-KL--KNAPETLGKVE  127 (397)
Q Consensus        59 ~~L~Ls~~-~i~~--lP~si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~-~L--~~lP~~~~~L~  127 (397)
                      ++|+|++| .++.  ++..+..+++|+.|+|++|. +..     ++.....+++|+.|++++|. .+  ..++.....++
T Consensus       133 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~  211 (594)
T 2p1m_B          133 KVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP  211 (594)
T ss_dssp             CEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCT
T ss_pred             cEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCC
Confidence            88888887 5553  55555678888888888864 332     33333456788888888764 11  11222233456


Q ss_pred             CCcEEECCCC
Q 015983          128 SLESAVETVT  137 (397)
Q Consensus       128 ~L~~L~ls~n  137 (397)
                      +|+.|++++|
T Consensus       212 ~L~~L~L~~~  221 (594)
T 2p1m_B          212 NLKSLKLNRA  221 (594)
T ss_dssp             TCCEEECCTT
T ss_pred             CCcEEecCCC
Confidence            7777777766

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=5.2e-05  Score=72.81  Aligned_cols=100  Identities=16%  Similarity=0.219  Sum_probs=82.4

Q ss_pred             CCCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc-cccCCCCCC-EEEecCCCCCCCC
Q 015983           18 FPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA-SIELLSGNV-LLNLKDRKNLKSL   95 (397)
Q Consensus        18 lP~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~-si~~L~~L~-~L~Ls~c~~l~~L   95 (397)
                      .+.+..|+|++|.++.+|...             +.++.+|+.|+|..| ++.++. .|.++.+|+ .|++.+  .+..+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~a-------------F~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I  288 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFT-------------FAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAI  288 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTT-------------TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEE
T ss_pred             cCCCeEEECCCCCcceecHhh-------------hhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEE
Confidence            355566888888888888653             467889999999987 888875 488999999 999987  68888


Q ss_pred             C-hhccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEEC
Q 015983           96 P-STINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVE  134 (397)
Q Consensus        96 P-~~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~l  134 (397)
                      + ..+.++++|+.|++++ +.+..++. .+.++++|+.++.
T Consensus       289 ~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          289 EFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred             chhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence            5 5899999999999988 57888875 6888989988763

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.81  E-value=3.7e-06  Score=79.34  Aligned_cols=79  Identities=20%  Similarity=0.236  Sum_probs=55.5

Q ss_pred             CCCCCCCEEEeeCCCCCcCC---ccccCCCCCCEEEecCCCCCCCCChhccCCC--cCceeeeecccCCccCCc------
Q 015983           53 SSKDQLLEIHLEGTAIRGLP---ASIELLSGNVLLNLKDRKNLKSLPSTINGLR--CLRMLHLSGCSKLKNAPE------  121 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP---~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~--sL~~L~Ls~C~~L~~lP~------  121 (397)
                      .++++|+.|+|++|.|+.++   ..+..+++|+.|+|++ |.+..+.. +..+.  +|++|+|++|..-..+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchh-hhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            35678999999999888654   5667889999999998 67877733 44444  888888888654444542      


Q ss_pred             -ccCCCCCCcEEE
Q 015983          122 -TLGKVESLESAV  133 (397)
Q Consensus       122 -~~~~L~~L~~L~  133 (397)
                       .+..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             244556666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.58  E-value=4e-05  Score=67.69  Aligned_cols=83  Identities=11%  Similarity=0.110  Sum_probs=61.0

Q ss_pred             CCCCEEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCCC-hhccCC----CcCceeeeecccCCccCC-cccCCCCC
Q 015983           56 DQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSLP-STINGL----RCLRMLHLSGCSKLKNAP-ETLGKVES  128 (397)
Q Consensus        56 ~~L~~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~LP-~~i~~L----~sL~~L~Ls~C~~L~~lP-~~~~~L~~  128 (397)
                      -.|+.|||++|.|+.. -..+..+++|+.|+|++|..++.-- ..+..+    ++|++|+|++|..++.-- ..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            3699999999998732 2456789999999999998776421 123333    479999999998775521 23456889


Q ss_pred             CcEEECCCCc
Q 015983          129 LESAVETVTK  138 (397)
Q Consensus       129 L~~L~ls~n~  138 (397)
                      |+.|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999885

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.58  E-value=1.3e-05  Score=79.13  Aligned_cols=113  Identities=17%  Similarity=0.165  Sum_probs=75.6

Q ss_pred             CCCcEEeccCCCCCc---------cCCCcceEEeecCCccccch-hhh--------hhhccc-----------cccCccC
Q 015983            2 KSLKTLVLSGCLKLK---------KFPDIVQVLWDGTDIRELSF-AIE--------LLFRLV-----------QEFPEKT   52 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~---------~lP~~~~L~Ls~n~l~~Lp~-si~--------~L~~L~-----------~~~P~~l   52 (397)
                      ++|+.|+|++|. +.         .++.+..|+|++|.|+.... .+.        .|+.|.           ..++..+
T Consensus       101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            467888888874 32         23344458888887764321 111        122222           2344445


Q ss_pred             CCCCCCCEEEeeCCCCCc-----CCccccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeecccCCc
Q 015983           53 SSKDQLLEIHLEGTAIRG-----LPASIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCSKLK  117 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~-----lP~si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~~L~  117 (397)
                      ..+++|++|+|++|.|+.     ++..+...++|+.|+|++| .+..     ++..+...++|++|+|++| .+.
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~  252 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELS  252 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCC
Confidence            677899999999999973     4566778889999999994 6653     4455566789999999996 443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.52  E-value=7.9e-05  Score=73.26  Aligned_cols=13  Identities=23%  Similarity=0.350  Sum_probs=8.9

Q ss_pred             cCCCcceEEeecC
Q 015983           17 KFPDIVQVLWDGT   29 (397)
Q Consensus        17 ~lP~~~~L~Ls~n   29 (397)
                      .+|.+..|.|+++
T Consensus       170 ~~P~L~~L~L~g~  182 (362)
T 2ra8_A          170 AMPLLNNLKIKGT  182 (362)
T ss_dssp             TCTTCCEEEEECC
T ss_pred             cCCCCcEEEEeCC
Confidence            4566666888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.25  E-value=9.3e-05  Score=65.38  Aligned_cols=84  Identities=17%  Similarity=0.145  Sum_probs=43.4

Q ss_pred             CCCCCCEEEeeCCCCCc-----CCccccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeee--ecccCCcc---
Q 015983           54 SKDQLLEIHLEGTAIRG-----LPASIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHL--SGCSKLKN---  118 (397)
Q Consensus        54 ~l~~L~~L~Ls~~~i~~-----lP~si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~L--s~C~~L~~---  118 (397)
                      ..++|++|+|++|.|..     +...+...++|+.|+|++ +.+..     +...+...++|++|+|  ++| .++.   
T Consensus        63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~  140 (185)
T 1io0_A           63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES-NFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVE  140 (185)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS-SCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHH
T ss_pred             hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC-CcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHH
Confidence            34556666666666652     333344455666666666 34443     3344445556666666  443 3322   


Q ss_pred             --CCcccCCCCCCcEEECCCCcc
Q 015983          119 --APETLGKVESLESAVETVTKF  139 (397)
Q Consensus       119 --lP~~~~~L~~L~~L~ls~n~~  139 (397)
                        +.+.+...+.|+.|++++|.+
T Consensus       141 ~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          141 MEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCCCcCEEeccCCCC
Confidence              222333445566666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.19  E-value=0.00018  Score=67.73  Aligned_cols=80  Identities=13%  Similarity=0.181  Sum_probs=56.4

Q ss_pred             cCCCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCC--CCCEEEecCCCCCC-
Q 015983           17 KFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLS--GNVLLNLKDRKNLK-   93 (397)
Q Consensus        17 ~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~--~L~~L~Ls~c~~l~-   93 (397)
                      .+|.+..|+|++|.|+.++.           +|..+..+++|+.|+|++|.|+.+ ..+..+.  +|+.|+|++| .+. 
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~-----------l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~N-pl~~  234 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDD-----------MSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGN-SLCD  234 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGG-----------GTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTS-TTGG
T ss_pred             hCCCCCEEECCCCCCCCCcc-----------chhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCC-cCcc
Confidence            35666668888887776542           222234678899999999999977 3345455  9999999994 554 


Q ss_pred             CCC-------hhccCCCcCceee
Q 015983           94 SLP-------STINGLRCLRMLH  109 (397)
Q Consensus        94 ~LP-------~~i~~L~sL~~L~  109 (397)
                      .+|       ..+..+++|+.||
T Consensus       235 ~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          235 TFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GCSSHHHHHHHHHHHCTTCCEES
T ss_pred             ccCcchhHHHHHHHHCcccCeEC
Confidence            455       2366788998886

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.19  E-value=0.0023  Score=63.51  Aligned_cols=78  Identities=6%  Similarity=0.106  Sum_probs=51.2

Q ss_pred             CCCCEEEeeCCCCCcCC-ccccCCCCCCEEEecCCCCCC-----CCC-hhccCCCcCceeeeecccCCccCCc-ccCCCC
Q 015983           56 DQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDRKNLK-----SLP-STINGLRCLRMLHLSGCSKLKNAPE-TLGKVE  127 (397)
Q Consensus        56 ~~L~~L~Ls~~~i~~lP-~si~~L~~L~~L~Ls~c~~l~-----~LP-~~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~  127 (397)
                      .+|+.+.| .++++.++ ..|.++++|+.+.+.+ +.+.     .++ ..+.++++|+.+.|.+  .+..++. .+..+.
T Consensus       248 ~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~-~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~  323 (401)
T 4fdw_A          248 SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYG-STFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNR  323 (401)
T ss_dssp             CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEES-SCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCC
T ss_pred             CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCC-ccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCC
Confidence            45666666 34455554 3477788888888876 3333     354 4677788888888874  4666653 567778


Q ss_pred             CCcEEECCCC
Q 015983          128 SLESAVETVT  137 (397)
Q Consensus       128 ~L~~L~ls~n  137 (397)
                      +|+.+.+..+
T Consensus       324 ~L~~l~lp~~  333 (401)
T 4fdw_A          324 KVTQLTIPAN  333 (401)
T ss_dssp             SCCEEEECTT
T ss_pred             CccEEEECcc
Confidence            8888877543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.17  E-value=0.00016  Score=63.90  Aligned_cols=101  Identities=15%  Similarity=0.183  Sum_probs=71.6

Q ss_pred             CCCcEEeccCCCCC------------ccCCCcceEEeecCCccccch-hhhhhhccccccCccCCCCCCCCEEEeeCCCC
Q 015983            2 KSLKTLVLSGCLKL------------KKFPDIVQVLWDGTDIRELSF-AIELLFRLVQEFPEKTSSKDQLLEIHLEGTAI   68 (397)
Q Consensus         2 ~sL~~L~LsgC~~L------------~~lP~~~~L~Ls~n~l~~Lp~-si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i   68 (397)
                      ++|+.|+|++|..+            ...+.+..|+|++|.|..-.. .+.          +.+...++|++|+|++|.|
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~----------~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA----------EMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH----------HHHHHCSSCCEEECCSSCC
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH----------HHHHhCCCcCEEECcCCcC
Confidence            57999999998333            233556669999998874211 111          1112346799999999999


Q ss_pred             Cc-----CCccccCCCCCCEEEe--cCCCCCCC-----CChhccCCCcCceeeeecc
Q 015983           69 RG-----LPASIELLSGNVLLNL--KDRKNLKS-----LPSTINGLRCLRMLHLSGC  113 (397)
Q Consensus        69 ~~-----lP~si~~L~~L~~L~L--s~c~~l~~-----LP~~i~~L~sL~~L~Ls~C  113 (397)
                      ..     +...+...++|+.|+|  ++ +.+..     +...+...++|++|+|++|
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            84     5667888889999999  66 56654     4455666689999999986

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.15  E-value=0.00022  Score=62.94  Aligned_cols=82  Identities=15%  Similarity=0.137  Sum_probs=57.8

Q ss_pred             EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCC-CCCcC-CccccCC----CCCCEEEecCCCCCCCC-C
Q 015983           24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGT-AIRGL-PASIELL----SGNVLLNLKDRKNLKSL-P   96 (397)
Q Consensus        24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~-~i~~l-P~si~~L----~~L~~L~Ls~c~~l~~L-P   96 (397)
                      |+|+++.|+..  .+.           .+..+++|++|+|++| .|+.- -..+..+    ++|+.|+|++|.+++.- =
T Consensus        66 LDLs~~~Itd~--GL~-----------~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           66 IDATDSCIMSI--GFD-----------HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             EEEESCCCCGG--GGG-----------GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             EeCcCCCccHH--HHH-----------HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            88888776532  111           1357889999999999 57631 1224443    36999999999888752 1


Q ss_pred             hhccCCCcCceeeeecccCCcc
Q 015983           97 STINGLRCLRMLHLSGCSKLKN  118 (397)
Q Consensus        97 ~~i~~L~sL~~L~Ls~C~~L~~  118 (397)
                      ..+.++++|++|+|++|..++.
T Consensus       133 ~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHhcCCCCCEEECCCCCCCCc
Confidence            2356789999999999987664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.70  E-value=0.0073  Score=59.82  Aligned_cols=77  Identities=9%  Similarity=0.142  Sum_probs=37.3

Q ss_pred             CCCCEEEeeCCCCCcCCc-cccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCC-cccCCCCCCcEE
Q 015983           56 DQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESA  132 (397)
Q Consensus        56 ~~L~~L~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L  132 (397)
                      .+|+.+.|. ++++.++. .|.++.+|+.+.+..  ++..++. .+.+ .+|+.+.+.+  .+..++ ..+..+.+|+.+
T Consensus       203 ~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l  276 (401)
T 4fdw_A          203 AGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEV  276 (401)
T ss_dssp             CCCSEEECC-TTCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEE
T ss_pred             cccCEEEeC-CchheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEE
Confidence            344444444 22444442 245555666666654  3444543 3333 5566665532  344443 345555556665


Q ss_pred             ECCCCc
Q 015983          133 VETVTK  138 (397)
Q Consensus       133 ~ls~n~  138 (397)
                      .+.++.
T Consensus       277 ~l~~~~  282 (401)
T 4fdw_A          277 TTYGST  282 (401)
T ss_dssp             EEESSC
T ss_pred             EeCCcc
Confidence            555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.67  E-value=0.0014  Score=64.27  Aligned_cols=85  Identities=13%  Similarity=0.038  Sum_probs=40.1

Q ss_pred             CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCC-CChhc--cCCCcCceeeeecccC-------CccCCcc
Q 015983           53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKS-LPSTI--NGLRCLRMLHLSGCSK-------LKNAPET  122 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~-LP~~i--~~L~sL~~L~Ls~C~~-------L~~lP~~  122 (397)
                      ..+++|+.|+|+++.-..++. +. +++|+.|+|..|. +.. .-..+  ..+++|+.|+|+.+..       +..+...
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             hcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            345567777776652123433 32 5667777776532 211 00112  2466666666643111       1112111


Q ss_pred             c--CCCCCCcEEECCCCccc
Q 015983          123 L--GKVESLESAVETVTKFA  140 (397)
Q Consensus       123 ~--~~L~~L~~L~ls~n~~~  140 (397)
                      +  ..+++|+.|++.+|.+.
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~  265 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQ  265 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTH
T ss_pred             HhcCCCCCcCEEeCCCCCCc
Confidence            2  23566666666665543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.20  E-value=0.033  Score=46.10  Aligned_cols=50  Identities=26%  Similarity=0.432  Sum_probs=22.4

Q ss_pred             EEEeeCCCCC--cCCccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeec
Q 015983           60 EIHLEGTAIR--GLPASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSG  112 (397)
Q Consensus        60 ~L~Ls~~~i~--~lP~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~  112 (397)
                      .++.+++.++  .+|..+.  .+|+.|+|++ |.|..||. .+..+++|+.|+|++
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~   64 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGA   64 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCS
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecC
Confidence            4444555554  5554322  2445555554 44544443 233344444444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.85  E-value=0.041  Score=45.54  Aligned_cols=55  Identities=24%  Similarity=0.328  Sum_probs=44.5

Q ss_pred             CEEEecCCCCCC--CCChhccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCccc
Q 015983           82 VLLNLKDRKNLK--SLPSTINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFA  140 (397)
Q Consensus        82 ~~L~Ls~c~~l~--~LP~~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~  140 (397)
                      ..++.++ +.++  .+|..+  ..+|+.|+|++ +.+..||. .+..+++|+.|++++|.+.
T Consensus        11 ~~v~Cs~-~~L~~~~vP~~l--p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGR-RGLTWASLPTAF--PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCS-SCCCTTTSCSCC--CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCC-CCCccccCCCCC--CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCee
Confidence            4678887 7888  899754  36899999999 68888875 4678899999999999753

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.96  E-value=0.64  Score=45.09  Aligned_cols=54  Identities=15%  Similarity=0.074  Sum_probs=22.4

Q ss_pred             CCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCC-cccCCCCCCcEEEC
Q 015983           77 LLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVE  134 (397)
Q Consensus        77 ~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~l  134 (397)
                      .+.+|+.+.+..  .+..++. .+.++.+|+.+++..  .++.|+ ..+.++.+|+.+.+
T Consensus       295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~l  350 (394)
T 4fs7_A          295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINF  350 (394)
T ss_dssp             TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECC
T ss_pred             cccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEE
Confidence            344444444432  2344432 344444444444432  233332 23444444444444

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.34  E-value=0.37  Score=46.77  Aligned_cols=79  Identities=13%  Similarity=0.147  Sum_probs=53.9

Q ss_pred             CCCCCCCEEEeeCCCCCcCCc-cccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCC
Q 015983           53 SSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESL  129 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L  129 (397)
                      ..+.+|+.+.+.. .++.++. .+.++.+|+.++|..  .+..++. ++.++.+|+.+.+..  .+..++. .+.++.+|
T Consensus       294 ~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          294 YGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINL  368 (394)
T ss_dssp             TTCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTC
T ss_pred             ccccccccccccc-ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCC
Confidence            4566777777754 3666654 467778888888864  4666743 677778888888765  3666653 57777788


Q ss_pred             cEEECCC
Q 015983          130 ESAVETV  136 (397)
Q Consensus       130 ~~L~ls~  136 (397)
                      +.+.+..
T Consensus       369 ~~i~lp~  375 (394)
T 4fs7_A          369 KKVELPK  375 (394)
T ss_dssp             CEEEEEG
T ss_pred             CEEEECC
Confidence            8777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=91.26  E-value=0.52  Score=45.72  Aligned_cols=79  Identities=11%  Similarity=0.181  Sum_probs=43.0

Q ss_pred             CCCCCCCCEEEeeCCCCCcCC-ccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCC
Q 015983           52 TSSKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVES  128 (397)
Q Consensus        52 l~~l~~L~~L~Ls~~~i~~lP-~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~  128 (397)
                      +..+.+|+.+.+..+. ..+. ..+.++.+|+.+.+..  .+..++. .+.++.+|+.+.|..  .++.|.. .+..+.+
T Consensus       261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred             eeecccccEEeccccc-ceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCC
Confidence            4455667777665432 2232 2355566666666652  4555544 455566666666653  3455542 4555666


Q ss_pred             CcEEECC
Q 015983          129 LESAVET  135 (397)
Q Consensus       129 L~~L~ls  135 (397)
                      |+.+.+.
T Consensus       336 L~~i~ip  342 (394)
T 4gt6_A          336 LERIAIP  342 (394)
T ss_dssp             CCEEEEC
T ss_pred             CCEEEEC
Confidence            6666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=90.25  E-value=0.64  Score=45.09  Aligned_cols=81  Identities=14%  Similarity=0.249  Sum_probs=56.0

Q ss_pred             CCCCCCCEEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCC
Q 015983           53 SSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESL  129 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L  129 (397)
                      .++.+|+.+.+. +.++.++.. |.++.+|+.+.|..  .++.+.. .+.++.+|+.+.+..  .+..++. .+.++.+|
T Consensus       285 ~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          285 MNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTAL  359 (394)
T ss_dssp             TTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTC
T ss_pred             ccccccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCC
Confidence            456677777774 456666643 66778888888864  4666644 677778888888854  4666653 57778888


Q ss_pred             cEEECCCCc
Q 015983          130 ESAVETVTK  138 (397)
Q Consensus       130 ~~L~ls~n~  138 (397)
                      +.+.+.++.
T Consensus       360 ~~i~~~~~~  368 (394)
T 4gt6_A          360 NNIEYSGSR  368 (394)
T ss_dssp             CEEEESSCH
T ss_pred             CEEEECCce
Confidence            888777653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=87.78  E-value=1  Score=43.07  Aligned_cols=82  Identities=15%  Similarity=0.163  Sum_probs=61.2

Q ss_pred             CCCCCCCCEEEeeCCCCCcCCc-cccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCC-cccCCCCC
Q 015983           52 TSSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAP-ETLGKVES  128 (397)
Q Consensus        52 l~~l~~L~~L~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~  128 (397)
                      +..+..|+.+.+..+ ++.+.. .+.++.+|+.+.+..  .+..++. .+.++.+|+.+.+.+ +.++.|+ ..+.++.+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~  311 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTT
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcCCCC
Confidence            455678888888754 666654 467788899999874  5777765 677889999999976 4677776 46778888


Q ss_pred             CcEEECCCC
Q 015983          129 LESAVETVT  137 (397)
Q Consensus       129 L~~L~ls~n  137 (397)
                      |+.+.+..+
T Consensus       312 L~~i~lp~~  320 (379)
T 4h09_A          312 LSSVTLPTA  320 (379)
T ss_dssp             CCEEECCTT
T ss_pred             CCEEEcCcc
Confidence            998888643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=85.78  E-value=0.88  Score=40.39  Aligned_cols=83  Identities=20%  Similarity=0.153  Sum_probs=48.4

Q ss_pred             CCCCCEEEeeCCCCC-----cCCccccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeeccc--CCcc----
Q 015983           55 KDQLLEIHLEGTAIR-----GLPASIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCS--KLKN----  118 (397)
Q Consensus        55 l~~L~~L~Ls~~~i~-----~lP~si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~--~L~~----  118 (397)
                      -+.|+.|+|++|.|.     .+-..+..=+.|+.|+|+. |.+..     |-..+..=+.|+.|+|++|.  .++.    
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~  147 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  147 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence            356888888888876     2333455556788888887 45543     22333444668888887642  2221    


Q ss_pred             -CCcccCCCCCCcEEECCCCc
Q 015983          119 -APETLGKVESLESAVETVTK  138 (397)
Q Consensus       119 -lP~~~~~L~~L~~L~ls~n~  138 (397)
                       +-+.+..=+.|..|+++.+.
T Consensus       148 ~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          148 DMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCCcCeEeccCCC
Confidence             22223333567777776654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=84.28  E-value=3.2  Score=39.60  Aligned_cols=87  Identities=17%  Similarity=0.195  Sum_probs=62.8

Q ss_pred             CCCCCCCCEEEeeCCCCCcCC-ccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCC
Q 015983           52 TSSKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVES  128 (397)
Q Consensus        52 l~~l~~L~~L~Ls~~~i~~lP-~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~  128 (397)
                      +....+|+.+.+..+ ++.++ ..+..+..|+.+.+..  .+..+.. .+.++.+|+.+.+..  .+..++. .+..+.+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~  287 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTT
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCC--CccEeCccccceeehhccccccc--cceeccccccccccc
Confidence            345667888877543 55554 3467788999999975  4777754 677788999999865  5777764 5778899


Q ss_pred             CcEEECCCCcccccc
Q 015983          129 LESAVETVTKFAKAE  143 (397)
Q Consensus       129 L~~L~ls~n~~~~L~  143 (397)
                      |+.+.+.++.++.++
T Consensus       288 L~~i~l~~~~i~~I~  302 (379)
T 4h09_A          288 LTKVVMDNSAIETLE  302 (379)
T ss_dssp             CCEEEECCTTCCEEC
T ss_pred             cccccccccccceeh
Confidence            999998877665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	397
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.38
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.33
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.32
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.26
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.23
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.21
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.2
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.18
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.16
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.15
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.11
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.09
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.07
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.07
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.05
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.03
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.02
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.94
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.91
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.83
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.78
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.73
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.69
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.57
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.34
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.27
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.68
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.22
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.06
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.0
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.92
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.31
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.41
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	87.66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.4e-12  Score=120.48  Aligned_cols=138  Identities=23%  Similarity=0.250  Sum_probs=96.2

Q ss_pred             CCCcEEeccCCCCCccC--------CCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEee
Q 015983            2 KSLKTLVLSGCLKLKKF--------PDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLE   64 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~l--------P~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls   64 (397)
                      ++|++|+|++| .++.+        +.+..|+|++|.|+.+|. ++.+++|+         ..+|..+..+++|+.|+++
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          31 KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             cCCCEEECcCC-cCCCcCHHHhhcccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            36888888887 34433        334448888888887764 23444443         4456667778888888888


Q ss_pred             CCCCCcCCc-cccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCcccc
Q 015983           65 GTAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus        65 ~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~~  141 (397)
                      ++.+..++. .+..+.+|+.|++++ +.+..+|. .+..+++|+.|++++| .+..+| ..+..+++|+.|++++|.++.
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~L~~  186 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYT  186 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ccccceeeccccccccccccccccc-cccceeccccccccccchhcccccc-cccccCccccccccccceeecccCCCcc
Confidence            888877654 456778888888887 56777754 4556778888888884 555554 456778888888888887776


Q ss_pred             cc
Q 015983          142 AE  143 (397)
Q Consensus       142 L~  143 (397)
                      ++
T Consensus       187 lp  188 (266)
T d1p9ag_         187 IP  188 (266)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=7.6e-12  Score=110.67  Aligned_cols=142  Identities=15%  Similarity=0.278  Sum_probs=103.4

Q ss_pred             CCCCcEEeccCCCC-----CccCCCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCC
Q 015983            1 MKSLKTLVLSGCLK-----LKKFPDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGT   66 (397)
Q Consensus         1 L~sL~~L~LsgC~~-----L~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~   66 (397)
                      |.+|+.|++++|..     +..++.+..|++++|.++.++. +..+++|+         ..+| .++.+++|+.|+++++
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNN  116 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCSS
T ss_pred             hcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-cccccccccccccccc
Confidence            35789999999831     2345555569999999998875 66666665         2333 3677888888888888


Q ss_pred             CCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccc
Q 015983           67 AIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIA  146 (397)
Q Consensus        67 ~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~  146 (397)
                      .+..++ .+..+++|+.|++++ +.+..+|. +..+++|+.|++.+| .+..++. ++.+++|+.|++++|+++.++.+.
T Consensus       117 ~~~~~~-~~~~l~~L~~L~l~~-n~l~~~~~-l~~~~~L~~L~l~~n-~l~~l~~-l~~l~~L~~L~ls~N~i~~i~~l~  191 (199)
T d2omxa2         117 QITDID-PLKNLTNLNRLELSS-NTISDISA-LSGLTSLQQLNFSSN-QVTDLKP-LANLTTLERLDISSNKVSDISVLA  191 (199)
T ss_dssp             CCCCCG-GGTTCTTCSEEECCS-SCCCCCGG-GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             cccccc-ccchhhhhHHhhhhh-hhhccccc-ccccccccccccccc-cccCCcc-ccCCCCCCEEECCCCCCCCCcccc
Confidence            777654 467788888888887 46777664 777888888888884 6666654 678888888888888887766555


Q ss_pred             cCC
Q 015983          147 QKD  149 (397)
Q Consensus       147 ~l~  149 (397)
                      +++
T Consensus       192 ~L~  194 (199)
T d2omxa2         192 KLT  194 (199)
T ss_dssp             GCT
T ss_pred             CCC
Confidence            443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=2.9e-12  Score=105.35  Aligned_cols=89  Identities=18%  Similarity=0.216  Sum_probs=78.0

Q ss_pred             CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCc--ccCCCCCCc
Q 015983           53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPE--TLGKVESLE  130 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~--~~~~L~~L~  130 (397)
                      +.+++|++|++++|.|+.+|..++.+++|+.|++++ |.+..+|. +..+++|++|++++ +.+..+|.  .++.+++|+
T Consensus        17 ~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~~-~~~l~~L~~L~l~~-N~i~~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVDG-VANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLV   93 (124)
T ss_dssp             GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCC
T ss_pred             ccCCCCCEEECCCCccCcchhhhhhhhccccccccc-ccccccCc-cccccccCeEECCC-CccCCCCCchhhcCCCCCC
Confidence            466789999999999999999999999999999999 78999986 88999999999999 57777764  578899999


Q ss_pred             EEECCCCccccccc
Q 015983          131 SAVETVTKFAKAEL  144 (397)
Q Consensus       131 ~L~ls~n~~~~L~~  144 (397)
                      .|++++|+++..+.
T Consensus        94 ~L~l~~N~i~~~~~  107 (124)
T d1dcea3          94 LLNLQGNSLCQEEG  107 (124)
T ss_dssp             EEECTTSGGGGSSS
T ss_pred             EEECCCCcCCcCcc
Confidence            99999998876543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=2.4e-11  Score=108.38  Aligned_cols=141  Identities=13%  Similarity=0.255  Sum_probs=89.7

Q ss_pred             CCCcEEeccCCC-----CCccCCCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCCC
Q 015983            2 KSLKTLVLSGCL-----KLKKFPDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGTA   67 (397)
Q Consensus         2 ~sL~~L~LsgC~-----~L~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~~   67 (397)
                      .+|+.|++++|.     .++.+|.+..|+|++|.|+.++. +..+++|+         ..+| .+..+++|+.|++++|.
T Consensus        46 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSC
T ss_pred             cCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccc-ccccccccccccccccc
Confidence            578999999983     23445566669999999998774 44444443         2333 24556666666666666


Q ss_pred             CCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccccccc
Q 015983           68 IRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIAQ  147 (397)
Q Consensus        68 i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~~  147 (397)
                      +..++ .+..+++|+.+++++ +.+..++ .+..+++|+++++++| .+..++. +.++++|+.|++++|.++.++.+++
T Consensus       124 ~~~~~-~l~~l~~l~~l~~~~-n~l~~~~-~~~~l~~L~~l~l~~n-~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~~l~~  198 (210)
T d1h6ta2         124 ISDIN-GLVHLPQLESLYLGN-NKITDIT-VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNHISDLRALAG  198 (210)
T ss_dssp             CCCCG-GGGGCTTCCEEECCS-SCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTT
T ss_pred             ccccc-ccccccccccccccc-ccccccc-cccccccccccccccc-ccccccc-ccCCCCCCEEECCCCCCCCChhhcC
Confidence            65544 355666666666665 3455443 3556677777777774 5555553 5677777777777777766655544


Q ss_pred             CC
Q 015983          148 KD  149 (397)
Q Consensus       148 l~  149 (397)
                      ++
T Consensus       199 l~  200 (210)
T d1h6ta2         199 LK  200 (210)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.6e-11  Score=110.82  Aligned_cols=138  Identities=20%  Similarity=0.206  Sum_probs=110.2

Q ss_pred             CCCcEEeccCCCCCccCCCcc-----eEEeecCCccccch-hhhhhhccc---------cccCccCCCCCCCCEEEeeCC
Q 015983            2 KSLKTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSF-AIELLFRLV---------QEFPEKTSSKDQLLEIHLEGT   66 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~-si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~   66 (397)
                      .++.+.+.+++ .|+.+|...     .|+|++|.|+.+|. .+.++++|+         ..+|. ++.+++|++|+|++|
T Consensus        10 ~~~~~v~C~~~-~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          10 ASHLEVNCDKR-NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHN   87 (266)
T ss_dssp             TTCCEEECTTS-CCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSS
T ss_pred             CCCeEEEccCC-CCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccccccc
Confidence            35566777775 677887533     39999999999985 467777776         44553 478999999999999


Q ss_pred             CCCcCCccccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcccccc
Q 015983           67 AIRGLPASIELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus        67 ~i~~lP~si~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      .++..|..+..+++|+.|+++++ .+..+ +..+..+.+|+.|++++| .+..+|. .+..++.|+.+++++|+++.++
T Consensus        88 ~l~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          88 QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             ccccccccccccccccccccccc-ccceeecccccccccccccccccc-ccceeccccccccccchhcccccccccccC
Confidence            99999999999999999999994 56555 456778899999999995 6777764 5677899999999999887654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.21  E-value=1.3e-11  Score=116.02  Aligned_cols=87  Identities=21%  Similarity=0.284  Sum_probs=49.8

Q ss_pred             CCCCcEEeccCCCCCc-cCCCcc-------eEEeecCCccccch-hhhhhhccc----------cccCccCCCCCCCCEE
Q 015983            1 MKSLKTLVLSGCLKLK-KFPDIV-------QVLWDGTDIRELSF-AIELLFRLV----------QEFPEKTSSKDQLLEI   61 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~-~lP~~~-------~L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~~l~~l~~L~~L   61 (397)
                      |++|++|+|++|..+. .+|...       .|+|++|.+..++. .+..+.+|.          ..+|..+..++.|+.+
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence            4567777776643332 454322       26777776665433 334444443          4566677777778888


Q ss_pred             EeeCCCCC-cCCccccCCCCC-CEEEec
Q 015983           62 HLEGTAIR-GLPASIELLSGN-VLLNLK   87 (397)
Q Consensus        62 ~Ls~~~i~-~lP~si~~L~~L-~~L~Ls   87 (397)
                      ++++|.++ .+|..+..+..+ +.++++
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~  182 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTIS  182 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred             eccccccccccccccccccccccccccc
Confidence            88777766 556555554443 444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.20  E-value=3.8e-11  Score=105.39  Aligned_cols=122  Identities=20%  Similarity=0.261  Sum_probs=91.2

Q ss_pred             CcEEeccCCCCCccCCCcc-----eEEeecCCccc-cchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCC-cccc
Q 015983            4 LKTLVLSGCLKLKKFPDIV-----QVLWDGTDIRE-LSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLP-ASIE   76 (397)
Q Consensus         4 L~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~-Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP-~si~   76 (397)
                      .++++.++. .|+.+|...     .|+|++|.|+. ++..             .+..+++|++|+|++|.+..++ ..+.
T Consensus        10 ~~~v~Cs~~-~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~-------------~f~~l~~L~~L~L~~N~i~~~~~~~~~   75 (192)
T d1w8aa_          10 GTTVDCTGR-GLKEIPRDIPLHTTELLLNDNELGRISSDG-------------LFGRLPHLVKLELKRNQLTGIEPNAFE   75 (192)
T ss_dssp             TTEEECTTS-CCSSCCSCCCTTCSEEECCSCCCCSBCCSC-------------SGGGCTTCCEEECCSSCCCCBCTTTTT
T ss_pred             CCEEEEeCC-CcCccCCCCCCCCCEEEeCCCCCccccccc-------------ccCCCceEeeeeccccccccccccccc
Confidence            356777775 677777532     38888888874 3322             2356778899999999888765 4577


Q ss_pred             CCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCcccc
Q 015983           77 LLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus        77 ~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~~  141 (397)
                      .+++|+.|+|++ |++..+|. .+.++++|++|+|++ +.+..+| ..+..+++|+.|++++|.+..
T Consensus        76 ~~~~L~~L~Ls~-N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          76 GASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccceeeecc-ccccccCHHHHhCCCcccccccCC-ccccccCHHHhcCCccccccccccccccc
Confidence            888999999998 67888754 678889999999998 4677775 457888889999998887643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=3.6e-11  Score=107.16  Aligned_cols=128  Identities=20%  Similarity=0.298  Sum_probs=103.4

Q ss_pred             CCCCcEEeccCCCCCccCC------CcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983            1 MKSLKTLVLSGCLKLKKFP------DIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG   65 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP------~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~   65 (397)
                      |++|++|+|++| .++.++      .+..|++++|.|+.+| .+..+++|+         ..+ +.+..+++|+.+++++
T Consensus        67 l~~L~~L~L~~n-~i~~l~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~~~-~~l~~l~~l~~l~~~~  143 (210)
T d1h6ta2          67 LPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGN  143 (210)
T ss_dssp             CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCS
T ss_pred             CCCCCEEeCCCc-cccCccccccCccccccccccccccccc-ccccccccccccccccccccc-cccccccccccccccc
Confidence            578999999998 455544      3444999999999988 466677665         222 3467789999999999


Q ss_pred             CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCC
Q 015983           66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETV  136 (397)
Q Consensus        66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~  136 (397)
                      |.++.++ .+..+++|+.+++++ +.+..++. +.++++|+.|++++| .++.+| .+..+++|+.|++++
T Consensus       144 n~l~~~~-~~~~l~~L~~l~l~~-n~l~~i~~-l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         144 NKITDIT-VLSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SCCCCCG-GGGGCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEE
T ss_pred             ccccccc-ccccccccccccccc-cccccccc-ccCCCCCCEEECCCC-CCCCCh-hhcCCCCCCEEEccC
Confidence            9998755 467899999999999 57888875 889999999999996 788887 478899999999864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.18  E-value=4.2e-11  Score=98.23  Aligned_cols=98  Identities=17%  Similarity=0.176  Sum_probs=80.9

Q ss_pred             cEEeccCCCCCccCCCcc------eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCC
Q 015983            5 KTLVLSGCLKLKKFPDIV------QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELL   78 (397)
Q Consensus         5 ~~L~LsgC~~L~~lP~~~------~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L   78 (397)
                      |+|+|++| .++.+|.+.      .|++++|.|+.+|..+              +.+++|+.|++++|.|+.+| .+..+
T Consensus         1 R~L~Ls~n-~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~--------------~~l~~L~~L~l~~N~i~~l~-~~~~l   64 (124)
T d1dcea3           1 RVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLRALPPAL--------------AALRCLEVLQASDNALENVD-GVANL   64 (124)
T ss_dssp             SEEECTTS-CCSSCCCGGGGTTCCEEECCSSCCCCCCGGG--------------GGCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred             CEEEcCCC-CCCCCcccccCCCCCEEECCCCccCcchhhh--------------hhhhcccccccccccccccC-ccccc
Confidence            67999998 566666543      3999999999988765              46788999999999999997 48999


Q ss_pred             CCCCEEEecCCCCCCCCCh--hccCCCcCceeeeecccCCccCC
Q 015983           79 SGNVLLNLKDRKNLKSLPS--TINGLRCLRMLHLSGCSKLKNAP  120 (397)
Q Consensus        79 ~~L~~L~Ls~c~~l~~LP~--~i~~L~sL~~L~Ls~C~~L~~lP  120 (397)
                      ++|+.|++++ +.+..+|.  .+..+++|++|++++| .+..++
T Consensus        65 ~~L~~L~l~~-N~i~~~~~~~~l~~~~~L~~L~l~~N-~i~~~~  106 (124)
T d1dcea3          65 PRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEE  106 (124)
T ss_dssp             SSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSS
T ss_pred             cccCeEECCC-CccCCCCCchhhcCCCCCCEEECCCC-cCCcCc
Confidence            9999999999 78888874  5788999999999994 555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.16  E-value=1.3e-10  Score=102.55  Aligned_cols=125  Identities=20%  Similarity=0.315  Sum_probs=99.2

Q ss_pred             CCCCcEEeccCCCCCcc------CCCcceEEeecCCccccchhhhhhhccc--------cccCccCCCCCCCCEEEeeCC
Q 015983            1 MKSLKTLVLSGCLKLKK------FPDIVQVLWDGTDIRELSFAIELLFRLV--------QEFPEKTSSKDQLLEIHLEGT   66 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~------lP~~~~L~Ls~n~l~~Lp~si~~L~~L~--------~~~P~~l~~l~~L~~L~Ls~~   66 (397)
                      |++|++|+|++| .++.      +|.+..|++++|.+..++. +..++.|+        ....+.+..|++|+.|++++|
T Consensus        61 l~nL~~L~Ls~N-~l~~~~~l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n  138 (199)
T d2omxa2          61 LNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN  138 (199)
T ss_dssp             CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             CCCcCcCccccc-cccCcccccCCcccccccccccccccccc-cccccccccccccccccccccccchhhhhHHhhhhhh
Confidence            578999999998 4544      4455559999999998874 66666665        122234678999999999999


Q ss_pred             CCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEE
Q 015983           67 AIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESA  132 (397)
Q Consensus        67 ~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L  132 (397)
                      .+..+| .+..+++|+.|++.+ +.+..++. ++++++|++|++++| .+..+|. ++.+++|+.|
T Consensus       139 ~l~~~~-~l~~~~~L~~L~l~~-n~l~~l~~-l~~l~~L~~L~ls~N-~i~~i~~-l~~L~~L~~L  199 (199)
T d2omxa2         139 TISDIS-ALSGLTSLQQLNFSS-NQVTDLKP-LANLTTLERLDISSN-KVSDISV-LAKLTNLESL  199 (199)
T ss_dssp             CCCCCG-GGTTCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEE
T ss_pred             hhcccc-ccccccccccccccc-ccccCCcc-ccCCCCCCEEECCCC-CCCCCcc-ccCCCCCCcC
Confidence            998876 588899999999998 57888875 889999999999996 6888864 6778887765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.5e-11  Score=103.32  Aligned_cols=105  Identities=18%  Similarity=0.145  Sum_probs=78.4

Q ss_pred             ceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChh-cc
Q 015983           22 VQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPST-IN  100 (397)
Q Consensus        22 ~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~-i~  100 (397)
                      ..|+|++|.|+.+|..+              ..+++|+.|+|++|.|+.++ .+..+++|+.|++++ +.+..+|.. +.
T Consensus        21 r~L~L~~n~I~~i~~~~--------------~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~-N~i~~l~~~~~~   84 (162)
T d1a9na_          21 RELDLRGYKIPVIENLG--------------ATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNN-NRICRIGEGLDQ   84 (162)
T ss_dssp             EEEECTTSCCCSCCCGG--------------GGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCS-SCCCEECSCHHH
T ss_pred             cEEECCCCCCCccCccc--------------cccccCCEEECCCCCCCccC-CcccCcchhhhhccc-ccccCCCccccc
Confidence            34677777776665322              35667889999999888885 478888899999988 578887654 45


Q ss_pred             CCCcCceeeeecccCCccCCc--ccCCCCCCcEEECCCCcccccc
Q 015983          101 GLRCLRMLHLSGCSKLKNAPE--TLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus       101 ~L~sL~~L~Ls~C~~L~~lP~--~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      .+++|+.|++++| .+..+++  .+..+++|+.|++++|+++.++
T Consensus        85 ~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          85 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             cccccccceeccc-cccccccccccccccccchhhcCCCcccccc
Confidence            6888999999884 6666664  4677888899999988877655

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.11  E-value=3.4e-11  Score=113.14  Aligned_cols=142  Identities=16%  Similarity=0.176  Sum_probs=96.0

Q ss_pred             CCCCcEEeccCCCCCccCC-------CcceEEeecCCcc-ccchhhhhhhccc-----------cccCccCCCCCCCCEE
Q 015983            1 MKSLKTLVLSGCLKLKKFP-------DIVQVLWDGTDIR-ELSFAIELLFRLV-----------QEFPEKTSSKDQLLEI   61 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~lP-------~~~~L~Ls~n~l~-~Lp~si~~L~~L~-----------~~~P~~l~~l~~L~~L   61 (397)
                      +.+|+.|++++|.....+|       .+..+++++|.+. .+|..+..+..+.           +..|..+..+. +..+
T Consensus       124 ~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l  202 (313)
T d1ogqa_         124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV  202 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred             hhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            3578889998886544444       3344888888887 6788777666553           34455555554 3467


Q ss_pred             EeeCCCCC-cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccc
Q 015983           62 HLEGTAIR-GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFA  140 (397)
Q Consensus        62 ~Ls~~~i~-~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~  140 (397)
                      ++..+.+. .+|..++.+++|+.|+++++ .+...+..++.+++|+.|+|++|...+.+|..++++++|+.|++++|+++
T Consensus       203 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         203 DLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             ccccccccccccccccccccccccccccc-cccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            77766555 55666777778888888774 44444445777778888888876544577877788888888888888776


Q ss_pred             -cccc
Q 015983          141 -KAEL  144 (397)
Q Consensus       141 -~L~~  144 (397)
                       .+|.
T Consensus       282 g~iP~  286 (313)
T d1ogqa_         282 GEIPQ  286 (313)
T ss_dssp             EECCC
T ss_pred             ccCCC
Confidence             3443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.09  E-value=3.6e-10  Score=105.51  Aligned_cols=87  Identities=22%  Similarity=0.219  Sum_probs=41.4

Q ss_pred             CCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccC-CcccCCCCCCc
Q 015983           52 TSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNA-PETLGKVESLE  130 (397)
Q Consensus        52 l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~  130 (397)
                      +..+++|+.+++++|.++.+|..+  +++|+.|+++++......|..+.+++.+++|++++| .+..+ |..+..+++|+
T Consensus       146 ~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~  222 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLR  222 (305)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCC
T ss_pred             cccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccc-cccccccccccccccce
Confidence            344566777777777666665432  345555555553333333334444444444444443 22222 23334444444


Q ss_pred             EEECCCCcccc
Q 015983          131 SAVETVTKFAK  141 (397)
Q Consensus       131 ~L~ls~n~~~~  141 (397)
                      .|++++|+++.
T Consensus       223 ~L~L~~N~L~~  233 (305)
T d1xkua_         223 ELHLNNNKLVK  233 (305)
T ss_dssp             EEECCSSCCSS
T ss_pred             eeecccccccc
Confidence            44444444433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.4e-10  Score=105.88  Aligned_cols=84  Identities=21%  Similarity=0.259  Sum_probs=38.8

Q ss_pred             CCCCCCCEEEeeCCCCCcCCc-cccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccCC-cccCCCCCC
Q 015983           53 SSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNAP-ETLGKVESL  129 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L  129 (397)
                      ..+++|+.|+|++|.++.+|. .+..+++|+.|++++| .+..+ |..+.++++|++|++++| .+..+| ..++.+++|
T Consensus       150 ~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L  227 (284)
T d1ozna_         150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRAL  227 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTC
T ss_pred             ccccchhhcccccCcccccchhhhccccccchhhhhhc-cccccChhHhhhhhhccccccccc-cccccccccccccccc
Confidence            344445555555555554432 3444555555555542 23322 444555555555555553 233332 334445555


Q ss_pred             cEEECCCCc
Q 015983          130 ESAVETVTK  138 (397)
Q Consensus       130 ~~L~ls~n~  138 (397)
                      +.|++++|+
T Consensus       228 ~~L~l~~N~  236 (284)
T d1ozna_         228 QYLRLNDNP  236 (284)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEecCCC
Confidence            555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.6e-10  Score=103.98  Aligned_cols=138  Identities=20%  Similarity=0.304  Sum_probs=105.6

Q ss_pred             CCCcEEeccCCCCCccCCC--------cceEEeecCCccccchhh-hhhhccc-----------cccCccCCCCCCCCEE
Q 015983            2 KSLKTLVLSGCLKLKKFPD--------IVQVLWDGTDIRELSFAI-ELLFRLV-----------QEFPEKTSSKDQLLEI   61 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP~--------~~~L~Ls~n~l~~Lp~si-~~L~~L~-----------~~~P~~l~~l~~L~~L   61 (397)
                      +++++|+|++| +++.+|.        +..|++++|.+..++... ..+..+.           ..-|..+.+|++|++|
T Consensus        32 ~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCC-cCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            36899999998 5666664        333999999999877654 3333332           2225668889999999


Q ss_pred             EeeCCCCCcCCc-cccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCc
Q 015983           62 HLEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTK  138 (397)
Q Consensus        62 ~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~  138 (397)
                      +|++|.+..++. .+..+.+|+.+++++ +.++.+|. .+..+++|+.|++++| .+..+| ..+..+++|+.+++++|.
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ecCCcccccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccccC-cccccchhhhccccccchhhhhhcc
Confidence            999999987764 577788999999998 68888864 6778889999999995 666664 567888999999999998


Q ss_pred             cccc
Q 015983          139 FAKA  142 (397)
Q Consensus       139 ~~~L  142 (397)
                      ++.+
T Consensus       189 l~~i  192 (284)
T d1ozna_         189 VAHV  192 (284)
T ss_dssp             CCEE
T ss_pred             cccc
Confidence            7654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=8.5e-10  Score=98.80  Aligned_cols=140  Identities=14%  Similarity=0.224  Sum_probs=89.0

Q ss_pred             CCCcEEeccCCCCCc------cCCCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCC
Q 015983            2 KSLKTLVLSGCLKLK------KFPDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGT   66 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~------~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~   66 (397)
                      ++|+.|++++|. ++      .+|.+..|++++|.++.+++ +..+.+|.         ..++ .+..+++|+.++++++
T Consensus        41 ~~L~~L~l~~~~-i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          41 DGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             HTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred             CCcCEEECCCCC-CCcchhHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccc-cccccccccccccccc
Confidence            567888888873 33      34444458888888877653 44454443         2222 2456677777777766


Q ss_pred             CCCcCCc---------------------cccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCC
Q 015983           67 AIRGLPA---------------------SIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGK  125 (397)
Q Consensus        67 ~i~~lP~---------------------si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~  125 (397)
                      .+..++.                     .+...++|+.|++++ +.+..++. +.++++|+.|++++| .+..+|. +..
T Consensus       118 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~-l~~l~~L~~L~Ls~n-~l~~l~~-l~~  193 (227)
T d1h6ua2         118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN-AQVSDLTP-LANLSKLTTLKADDN-KISDISP-LAS  193 (227)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS-SCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGG
T ss_pred             cccccchhccccchhhhhchhhhhchhhhhccccccccccccc-cccccchh-hcccccceecccCCC-ccCCChh-hcC
Confidence            5443211                     245566778888776 35555544 677788888888875 6777754 567


Q ss_pred             CCCCcEEECCCCccccccccccC
Q 015983          126 VESLESAVETVTKFAKAELIAQK  148 (397)
Q Consensus       126 L~~L~~L~ls~n~~~~L~~l~~l  148 (397)
                      +++|+.|++++|+++.++.++.+
T Consensus       194 l~~L~~L~Ls~N~lt~i~~l~~l  216 (227)
T d1h6ua2         194 LPNLIEVHLKNNQISDVSPLANT  216 (227)
T ss_dssp             CTTCCEEECTTSCCCBCGGGTTC
T ss_pred             CCCCCEEECcCCcCCCCcccccC
Confidence            78888888888877776655433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=4.7e-10  Score=106.96  Aligned_cols=140  Identities=16%  Similarity=0.265  Sum_probs=97.9

Q ss_pred             CCCcEEeccCCCCCccCC------CcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCC
Q 015983            2 KSLKTLVLSGCLKLKKFP------DIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGT   66 (397)
Q Consensus         2 ~sL~~L~LsgC~~L~~lP------~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~   66 (397)
                      ++|+.|++++| .++.+|      .+..|++++|.++.++. +..+++|+         ..+++ +..+..++.+.+..|
T Consensus       219 ~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n  295 (384)
T d2omza2         219 TNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN  295 (384)
T ss_dssp             TTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS
T ss_pred             CCCCEEECCCC-CCCCcchhhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCc-ccccccccccccccc
Confidence            57899999998 444444      34448999998887764 44444443         22222 455677777888777


Q ss_pred             CCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccc
Q 015983           67 AIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIA  146 (397)
Q Consensus        67 ~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~  146 (397)
                      .++.++ .+..+.+++.|++++ +++..++. +..+++|+.|++++| .++.+| .++.+++|+.|++++|+++.++.+.
T Consensus       296 ~l~~~~-~~~~~~~l~~L~ls~-n~l~~l~~-l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~l~  370 (384)
T d2omza2         296 QLEDIS-PISNLKNLTYLTLYF-NNISDISP-VSSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHNQISDLTPLA  370 (384)
T ss_dssp             CCSCCG-GGGGCTTCSEEECCS-SCCSCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSSCCCBCGGGT
T ss_pred             cccccc-ccchhcccCeEECCC-CCCCCCcc-cccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCCcCCCChhhc
Confidence            777654 467778888888887 57777764 677888888888885 677776 4677888888888888877765554


Q ss_pred             cCC
Q 015983          147 QKD  149 (397)
Q Consensus       147 ~l~  149 (397)
                      +++
T Consensus       371 ~l~  373 (384)
T d2omza2         371 NLT  373 (384)
T ss_dssp             TCT
T ss_pred             cCC
Confidence            443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.02  E-value=9.9e-10  Score=104.67  Aligned_cols=142  Identities=15%  Similarity=0.299  Sum_probs=100.9

Q ss_pred             CCCCcEEeccCCCCCccC------CCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983            1 MKSLKTLVLSGCLKLKKF------PDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG   65 (397)
Q Consensus         1 L~sL~~L~LsgC~~L~~l------P~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~   65 (397)
                      +++++.|++++|. +..+      +.+..|++++|.++.+| .+..+++|.         ..++. ++.+++|+.|++++
T Consensus       196 l~~~~~l~l~~n~-i~~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~  272 (384)
T d2omza2         196 LTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGA  272 (384)
T ss_dssp             CTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred             ccccceeeccCCc-cCCCCcccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc-ccccccCCEeeccC
Confidence            4567888888873 3333      23334888888888776 344555544         22332 56778889999988


Q ss_pred             CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccccc
Q 015983           66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELI  145 (397)
Q Consensus        66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l  145 (397)
                      +.++.++. +..+..++.+.+.. +.+..++. +..+.+++.|++++| ++..++. +..+++|+.|++++|.++.++.+
T Consensus       273 ~~l~~~~~-~~~~~~l~~l~~~~-n~l~~~~~-~~~~~~l~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~~n~l~~l~~l  347 (384)
T d2omza2         273 NQISNISP-LAGLTALTNLELNE-NQLEDISP-ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFANNKVSDVSSL  347 (384)
T ss_dssp             SCCCCCGG-GTTCTTCSEEECCS-SCCSCCGG-GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSSCCCCCGGG
T ss_pred             cccCCCCc-cccccccccccccc-cccccccc-cchhcccCeEECCCC-CCCCCcc-cccCCCCCEEECCCCCCCCChhH
Confidence            88887764 66778888888887 56766654 677888899999885 6666653 67788899999999888877766


Q ss_pred             ccCCC
Q 015983          146 AQKDS  150 (397)
Q Consensus       146 ~~l~~  150 (397)
                      ..++.
T Consensus       348 ~~l~~  352 (384)
T d2omza2         348 ANLTN  352 (384)
T ss_dssp             GGCTT
T ss_pred             cCCCC
Confidence            65544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.94  E-value=3.9e-09  Score=98.25  Aligned_cols=88  Identities=13%  Similarity=0.123  Sum_probs=50.6

Q ss_pred             cCCCCCCCCEEEeeCCCCCcCC-ccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCc-------c
Q 015983           51 KTSSKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPE-------T  122 (397)
Q Consensus        51 ~l~~l~~L~~L~Ls~~~i~~lP-~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~-------~  122 (397)
                      .+..++.++.|++++|.++.++ ..+..+++|+.|+|++ +.++.+|..+..+++|++|+|++| +++.++.       .
T Consensus       190 ~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~-N~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~  267 (305)
T d1xkua_         190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN-NKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGY  267 (305)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSC
T ss_pred             Hhhccccccccccccccccccccccccccccceeeeccc-ccccccccccccccCCCEEECCCC-ccCccChhhccCcch
Confidence            3455556666666666666553 3455666666666666 356666666666666666666663 4555542       1


Q ss_pred             cCCCCCCcEEECCCCccc
Q 015983          123 LGKVESLESAVETVTKFA  140 (397)
Q Consensus       123 ~~~L~~L~~L~ls~n~~~  140 (397)
                      ...+.+|+.|++++|+++
T Consensus       268 ~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         268 NTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CTTSCCCSEEECCSSSSC
T ss_pred             hcccCCCCEEECCCCcCc
Confidence            223455666666666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.91  E-value=2.1e-09  Score=93.96  Aligned_cols=103  Identities=19%  Similarity=0.247  Sum_probs=84.7

Q ss_pred             eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCc-CC-ccccCCCCCCEEEecCCCCCCCC-Chhc
Q 015983           23 QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRG-LP-ASIELLSGNVLLNLKDRKNLKSL-PSTI   99 (397)
Q Consensus        23 ~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~-lP-~si~~L~~L~~L~Ls~c~~l~~L-P~~i   99 (397)
                      .++.+++.++.||..|          |      +++++|+|++|.|+. ++ ..+..+++|+.|+|++ +.+..+ +..+
T Consensus        12 ~v~Cs~~~L~~iP~~l----------p------~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~-N~i~~~~~~~~   74 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDI----------P------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAF   74 (192)
T ss_dssp             EEECTTSCCSSCCSCC----------C------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTT
T ss_pred             EEEEeCCCcCccCCCC----------C------CCCCEEEeCCCCCcccccccccCCCceEeeeeccc-ccccccccccc
Confidence            3778888888888653          1      478999999999985 43 4578999999999999 556555 5688


Q ss_pred             cCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCcccccc
Q 015983          100 NGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFAKAE  143 (397)
Q Consensus       100 ~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~~L~  143 (397)
                      ..+++|++|+|++| ++..+| ..+..+++|+.|++++|.++.++
T Consensus        75 ~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~  118 (192)
T d1w8aa_          75 EGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVM  118 (192)
T ss_dssp             TTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccceeeeccc-cccccCHHHHhCCCcccccccCCccccccC
Confidence            88999999999994 777776 46899999999999999988754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=8e-09  Score=87.63  Aligned_cols=101  Identities=16%  Similarity=0.098  Sum_probs=80.2

Q ss_pred             EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCC-CCCcCCc-cccCCCCCCEEEecCCCCCCCC-Chhcc
Q 015983           24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGT-AIRGLPA-SIELLSGNVLLNLKDRKNLKSL-PSTIN  100 (397)
Q Consensus        24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~-~i~~lP~-si~~L~~L~~L~Ls~c~~l~~L-P~~i~  100 (397)
                      +..+++.+.++|..              +..+++|++|+++++ .|+.++. .|..+++|+.|+|++ +.+..+ |..+.
T Consensus        13 l~c~~~~~~~~p~~--------------l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~   77 (156)
T d2ifga3          13 LRCTRDGALDSLHH--------------LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFH   77 (156)
T ss_dssp             EECCSSCCCTTTTT--------------SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGG
T ss_pred             EEecCCCCccCccc--------------ccCccccCeeecCCCccccccCchhhccccccCcceeec-cccCCccccccc
Confidence            55555566555543              356788999999876 5999885 589999999999999 689988 45788


Q ss_pred             CCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccc
Q 015983          101 GLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFA  140 (397)
Q Consensus       101 ~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~  140 (397)
                      ++++|++|+|++ +.++.+|........|+.|++++|++.
T Consensus        78 ~l~~L~~L~Ls~-N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          78 FTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccccccceeccC-CCCcccChhhhccccccccccCCCccc
Confidence            999999999999 678899876555557999999999763

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.78  E-value=2.8e-08  Score=88.59  Aligned_cols=124  Identities=16%  Similarity=0.309  Sum_probs=86.4

Q ss_pred             CcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCC
Q 015983           20 DIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRK   90 (397)
Q Consensus        20 ~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~   90 (397)
                      .+..|++.+|.|+.++ .+..+++|+         ..++ .+..+++|++|++++|.++.++ .+..+++|+.|++++|.
T Consensus        42 ~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~~  118 (227)
T d1h6ua2          42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ  118 (227)
T ss_dssp             TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC
T ss_pred             CcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc-cccccccccccccccccccccc-ccccccccccccccccc
Confidence            3344999999999985 577777776         2222 2688899999999999999876 47889999999998853


Q ss_pred             CCCCCCh---------------------hccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccccCC
Q 015983           91 NLKSLPS---------------------TINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIAQKD  149 (397)
Q Consensus        91 ~l~~LP~---------------------~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~~l~  149 (397)
                       ...++.                     .+..+++|+.|++++| .+..++. ++++++|+.|++++|.++.++.+..++
T Consensus       119 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~l~~l~  195 (227)
T d1h6ua2         119 -ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDNKISDISPLASLP  195 (227)
T ss_dssp             -CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             -ccccchhccccchhhhhchhhhhchhhhhcccccccccccccc-ccccchh-hcccccceecccCCCccCCChhhcCCC
Confidence             322211                     2345566777777764 3444332 567778888888888777666554443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5.9e-09  Score=89.02  Aligned_cols=90  Identities=16%  Similarity=0.144  Sum_probs=77.7

Q ss_pred             CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcc-cCCCCCCcE
Q 015983           53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPET-LGKVESLES  131 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~-~~~L~~L~~  131 (397)
                      .++..|++|+|++|.|+.+|..+..+++|+.|+|++ |.+..++. +..+++|++|++++| .+..+|.. +..+++|+.
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~-N~i~~l~~-~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSD-NEIRKLDG-FPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCS-SCCCEECC-CCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCC-CCCCccCC-cccCcchhhhhcccc-cccCCCcccccccccccc
Confidence            456689999999999999997778899999999999 68999864 889999999999995 67888764 457899999


Q ss_pred             EECCCCcccccccc
Q 015983          132 AVETVTKFAKAELI  145 (397)
Q Consensus       132 L~ls~n~~~~L~~l  145 (397)
                      |++++|.++.++.+
T Consensus        92 L~L~~N~i~~~~~l  105 (162)
T d1a9na_          92 LILTNNSLVELGDL  105 (162)
T ss_dssp             EECCSCCCCCGGGG
T ss_pred             ceeccccccccccc
Confidence            99999998876654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.73  E-value=4e-08  Score=91.64  Aligned_cols=128  Identities=16%  Similarity=0.208  Sum_probs=67.2

Q ss_pred             CCcEEeccCCCCCccCCCcc----eEEeecCCccccchhhhhhhccc------cccCccCCCCCCCCEEEeeCCCCCcCC
Q 015983            3 SLKTLVLSGCLKLKKFPDIV----QVLWDGTDIRELSFAIELLFRLV------QEFPEKTSSKDQLLEIHLEGTAIRGLP   72 (397)
Q Consensus         3 sL~~L~LsgC~~L~~lP~~~----~L~Ls~n~l~~Lp~si~~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~~lP   72 (397)
                      +|+.|+|+++ .++.+|+..    .|+|++|.|+++|..+++|+.|.      ..+++.   .+.|++|++++|.++.+|
T Consensus        39 ~l~~LdLs~~-~L~~lp~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l~~lp  114 (353)
T d1jl5a_          39 QAHELELNNL-GLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP  114 (353)
T ss_dssp             TCSEEECTTS-CCSCCCSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC
T ss_pred             CCCEEEeCCC-CCCCCCCCCCCCCEEECCCCCCcccccchhhhhhhhhhhcccchhhhh---cccccccccccccccccc
Confidence            6899999998 688887654    39999999999987655444443      222211   123455555555555554


Q ss_pred             ccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983           73 ASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus        73 ~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~  141 (397)
                      . ++.+++|+.|++++ +.+...|..+   ..+..|.+..+..  ..+..++.+..++.+.+..|....
T Consensus       115 ~-~~~l~~L~~L~l~~-~~~~~~~~~~---~~l~~l~~~~~~~--~~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         115 E-LQNSSFLKIIDVDN-NSLKKLPDLP---PSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             C-CTTCTTCCEEECCS-SCCSCCCCCC---TTCCEEECCSSCC--SSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             c-hhhhccceeecccc-cccccccccc---ccccchhhccccc--cccccccccccceecccccccccc
Confidence            3 34455555555554 2333333322   2333333333211  111223444555555555554433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.72  E-value=1.2e-10  Score=103.23  Aligned_cols=105  Identities=20%  Similarity=0.217  Sum_probs=80.0

Q ss_pred             CCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChh
Q 015983           19 PDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPST   98 (397)
Q Consensus        19 P~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~   98 (397)
                      +.+..|+|++|.|+.++ .+              ..|++|+.|+|++|.|+.+|..+..+.+|+.|++++ +.+..++. 
T Consensus        48 ~~L~~L~Ls~n~I~~i~-~l--------------~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~-N~i~~l~~-  110 (198)
T d1m9la_          48 KACKHLALSTNNIEKIS-SL--------------SGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLSG-  110 (198)
T ss_dssp             TTCCEEECSEEEESCCC-CH--------------HHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE-EECCCHHH-
T ss_pred             cccceeECcccCCCCcc-cc--------------cCCccccChhhccccccccccccccccccccccccc-cccccccc-
Confidence            34444777777777664 23              356678999999999998887666677899999988 57887754 


Q ss_pred             ccCCCcCceeeeecccCCccCCc--ccCCCCCCcEEECCCCcccc
Q 015983           99 INGLRCLRMLHLSGCSKLKNAPE--TLGKVESLESAVETVTKFAK  141 (397)
Q Consensus        99 i~~L~sL~~L~Ls~C~~L~~lP~--~~~~L~~L~~L~ls~n~~~~  141 (397)
                      +..+++|+.|++++| .+..++.  .+..+++|+.|++++|++..
T Consensus       111 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         111 IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccccccccccc-hhccccccccccCCCccceeecCCCcccc
Confidence            777889999999984 6776663  57888999999999987654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4.1e-08  Score=87.88  Aligned_cols=138  Identities=19%  Similarity=0.184  Sum_probs=71.3

Q ss_pred             CCcEEeccCCCCCccCCC--------cceEEeecCCccc-cch-hhhhhhccc-----------cccCccCCCCCCCCEE
Q 015983            3 SLKTLVLSGCLKLKKFPD--------IVQVLWDGTDIRE-LSF-AIELLFRLV-----------QEFPEKTSSKDQLLEI   61 (397)
Q Consensus         3 sL~~L~LsgC~~L~~lP~--------~~~L~Ls~n~l~~-Lp~-si~~L~~L~-----------~~~P~~l~~l~~L~~L   61 (397)
                      ++++|+|++| .++.+|.        +..|++++|.+.. +|. .+..++.+.           ...+..+.++++|++|
T Consensus        30 ~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            5677777776 3444432        2337777776654 332 233333332           2233445677788888


Q ss_pred             EeeCCCCCcCCcc--ccCCC-------------------------CCCEEEecCCCCCCCCChhccCCCcCceeeeeccc
Q 015983           62 HLEGTAIRGLPAS--IELLS-------------------------GNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCS  114 (397)
Q Consensus        62 ~Ls~~~i~~lP~s--i~~L~-------------------------~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~  114 (397)
                      ++++|.++..+..  +..+.                         .++.|++.+ +.+..++.......+++.+....++
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~~~~~~~l~~~~~l~~n  187 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNCAFNGTQLDELNLSDNN  187 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTTTTTCCEEEEECTTCT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccc-ccccccccccccchhhhcccccccc
Confidence            8888777654431  11222                         233334433 3344444433334444444433445


Q ss_pred             CCccCCc-ccCCCCCCcEEECCCCccccc
Q 015983          115 KLKNAPE-TLGKVESLESAVETVTKFAKA  142 (397)
Q Consensus       115 ~L~~lP~-~~~~L~~L~~L~ls~n~~~~L  142 (397)
                      .++.+|. .+..+++|+.|++++|+++.+
T Consensus       188 ~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l  216 (242)
T d1xwdc1         188 NLEELPNDVFHGASGPVILDISRTRIHSL  216 (242)
T ss_dssp             TCCCCCTTTTTTSCCCSEEECTTSCCCCC
T ss_pred             ccccccHHHhcCCCCCCEEECCCCcCCcc
Confidence            5666654 355666677777766665544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.67  E-value=3.8e-08  Score=91.81  Aligned_cols=59  Identities=20%  Similarity=0.124  Sum_probs=36.7

Q ss_pred             CCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccc
Q 015983           78 LSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAEL  144 (397)
Q Consensus        78 L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~  144 (397)
                      +++|+.|+|++ +.+..+|..   +++|+.|+|++| .++.+|+.   +.+|+.|++++|++++++.
T Consensus       283 ~~~L~~L~Ls~-N~l~~lp~~---~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         283 PPSLEELNVSN-NKLIELPAL---PPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNPLREFPD  341 (353)
T ss_dssp             CTTCCEEECCS-SCCSCCCCC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCCSSCCC
T ss_pred             CCCCCEEECCC-CccCccccc---cCCCCEEECCCC-cCCccccc---cCCCCEEECcCCcCCCCCc
Confidence            45677777776 356666653   456677777663 56666653   3456667777776666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=6.5e-08  Score=86.54  Aligned_cols=77  Identities=21%  Similarity=0.276  Sum_probs=60.3

Q ss_pred             CCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEE
Q 015983           56 DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAV  133 (397)
Q Consensus        56 ~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~  133 (397)
                      ..++.|++++|.++.++.......++..+....++.++.+|. .+.++++|++|+|++ ++++.+|. .+.+++.|+.++
T Consensus       153 ~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         153 FESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             SSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT-SCCCCCCSSSCTTCCEEESSS
T ss_pred             ccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCC-CcCCccCHHHHcCCcccccCc
Confidence            368889999999999988877778887777666689999986 478899999999999 46888875 355555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=7.9e-08  Score=81.26  Aligned_cols=96  Identities=18%  Similarity=0.191  Sum_probs=73.5

Q ss_pred             CcEEeccCCCCC---ccCC---CcceEEeecC-CccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCC-ccc
Q 015983            4 LKTLVLSGCLKL---KKFP---DIVQVLWDGT-DIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLP-ASI   75 (397)
Q Consensus         4 L~~L~LsgC~~L---~~lP---~~~~L~Ls~n-~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP-~si   75 (397)
                      .+.++.++....   ..+|   .+..|+++++ .|+.++..             .+.+|++|+.|+|++|.|+.++ ..|
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~-------------~f~~l~~L~~L~Ls~N~l~~i~~~~f   76 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELR-------------DLRGLGELRNLTIVKSGLRFVAPDAF   76 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGG-------------GSCSCCCCSEEECCSSCCCEECTTGG
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCch-------------hhccccccCcceeeccccCCcccccc
Confidence            455666665322   2233   3344888765 58888753             2467899999999999999996 458


Q ss_pred             cCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecc
Q 015983           76 ELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGC  113 (397)
Q Consensus        76 ~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C  113 (397)
                      ..+++|+.|+|++ |.++.+|..+....+|+.|+|++|
T Consensus        77 ~~l~~L~~L~Ls~-N~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          77 HFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             GSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             cccccccceeccC-CCCcccChhhhccccccccccCCC
Confidence            9999999999999 789999987666668999999996

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.7e-07  Score=85.22  Aligned_cols=137  Identities=22%  Similarity=0.269  Sum_probs=67.8

Q ss_pred             CCCCcEEeccCCCC-------CccCCCcceEEeec-CCccc--cchhhhhhhccc----c--------ccCccCC-CCCC
Q 015983            1 MKSLKTLVLSGCLK-------LKKFPDIVQVLWDG-TDIRE--LSFAIELLFRLV----Q--------EFPEKTS-SKDQ   57 (397)
Q Consensus         1 L~sL~~L~LsgC~~-------L~~lP~~~~L~Ls~-n~l~~--Lp~si~~L~~L~----~--------~~P~~l~-~l~~   57 (397)
                      +++|++|+|++|..       +...|.+..|++++ +.++.  +..-...+++|+    .        .++..+. ..++
T Consensus        70 c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~  149 (284)
T d2astb2          70 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  149 (284)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccc
Confidence            36788888888842       23456666688887 35552  221122222222    0        0000011 1245


Q ss_pred             CCEEEeeCC--CCC--cCCccccCCCCCCEEEecCCCCCCC-CChhccCCCcCceeeeecccCCcc-CCcccCCCCCCcE
Q 015983           58 LLEIHLEGT--AIR--GLPASIELLSGNVLLNLKDRKNLKS-LPSTINGLRCLRMLHLSGCSKLKN-APETLGKVESLES  131 (397)
Q Consensus        58 L~~L~Ls~~--~i~--~lP~si~~L~~L~~L~Ls~c~~l~~-LP~~i~~L~sL~~L~Ls~C~~L~~-lP~~~~~L~~L~~  131 (397)
                      |+.|+++++  .++  .+..-..++++|+.|++++|..++. .+..+.++++|++|++++|+.+.. -...++++++|+.
T Consensus       150 L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~  229 (284)
T d2astb2         150 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT  229 (284)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             cchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCE
Confidence            566666553  232  1222234456666666666555542 234455566666666666654432 1223445566666


Q ss_pred             EECCCC
Q 015983          132 AVETVT  137 (397)
Q Consensus       132 L~ls~n  137 (397)
                      |++.++
T Consensus       230 L~l~~~  235 (284)
T d2astb2         230 LQVFGI  235 (284)
T ss_dssp             EECTTS
T ss_pred             EeeeCC
Confidence            666555

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.34  E-value=1.7e-09  Score=95.49  Aligned_cols=88  Identities=15%  Similarity=0.107  Sum_probs=74.1

Q ss_pred             CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEE
Q 015983           53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESA  132 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L  132 (397)
                      ..+++|++|+|++|.|+.++ .+..+++|+.|+|++ +.+..+|..+..+++|+.|++++| .+..++. +..+++|+.|
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~-N~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~~-~~~l~~L~~L  120 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGR-NLIKKIENLDAVADTLEELWISYN-QIASLSG-IEKLVNLRVL  120 (198)
T ss_dssp             HHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCE-EEECSCSSHHHHHHHCCEEECSEE-ECCCHHH-HHHHHHSSEE
T ss_pred             hcccccceeECcccCCCCcc-cccCCccccChhhcc-cccccccccccccccccccccccc-ccccccc-cccccccccc
Confidence            45678999999999999986 588999999999998 578999876666778999999995 6777753 5678889999


Q ss_pred             ECCCCccccccc
Q 015983          133 VETVTKFAKAEL  144 (397)
Q Consensus       133 ~ls~n~~~~L~~  144 (397)
                      ++++|.++.++.
T Consensus       121 ~L~~N~i~~~~~  132 (198)
T d1m9la_         121 YMSNNKITNWGE  132 (198)
T ss_dssp             EESEEECCCHHH
T ss_pred             ccccchhccccc
Confidence            999998877654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=5.4e-08  Score=90.10  Aligned_cols=77  Identities=16%  Similarity=0.210  Sum_probs=41.2

Q ss_pred             CCCcEEeccCCCC--------CccCCCcceEEeecCCcc-ccchhhhhhhccccccCccCCCCCCCCEEEeeCC-CCCc-
Q 015983            2 KSLKTLVLSGCLK--------LKKFPDIVQVLWDGTDIR-ELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGT-AIRG-   70 (397)
Q Consensus         2 ~sL~~L~LsgC~~--------L~~lP~~~~L~Ls~n~l~-~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~-~i~~-   70 (397)
                      .+|++|+|++|..        +...|.+..|+|+++.+. ..+..+              ..+++|++|+|++| .++. 
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l--------------~~~~~L~~L~Ls~c~~itd~  111 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL--------------AKNSNLVRLNLSGCSGFSEF  111 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH--------------TTCTTCSEEECTTCBSCCHH
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH--------------hcCCCCcCcccccccccccc
Confidence            3677888887732        134556666777777665 223333              34455666666553 4441 


Q ss_pred             -CCccccCCCCCCEEEecCCCCC
Q 015983           71 -LPASIELLSGNVLLNLKDRKNL   92 (397)
Q Consensus        71 -lP~si~~L~~L~~L~Ls~c~~l   92 (397)
                       +..-...+++|+.|++++|..+
T Consensus       112 ~l~~l~~~~~~L~~L~ls~c~~~  134 (284)
T d2astb2         112 ALQTLLSSCSRLDELNLSWCFDF  134 (284)
T ss_dssp             HHHHHHHHCTTCCEEECCCCTTC
T ss_pred             ccchhhHHHHhcccccccccccc
Confidence             2222334555666666655444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.6e-06  Score=73.36  Aligned_cols=80  Identities=20%  Similarity=0.140  Sum_probs=55.5

Q ss_pred             CCCCCCCEEEeeCCCCCcCC---ccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-------
Q 015983           53 SSKDQLLEIHLEGTAIRGLP---ASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-------  121 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~lP---~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-------  121 (397)
                      ..+++|++|+|++|.|+.++   ..+..+++|+.|+|++ |.+..++. ...+...|+.|++++|........       
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            45778999999999998765   3467789999999998 78888876 223345788888888643332221       


Q ss_pred             ccCCCCCCcEEE
Q 015983          122 TLGKVESLESAV  133 (397)
Q Consensus       122 ~~~~L~~L~~L~  133 (397)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            244566666653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.22  E-value=6.9e-05  Score=69.89  Aligned_cols=86  Identities=19%  Similarity=0.269  Sum_probs=54.4

Q ss_pred             CCCCCCCEEEeeCCCCCc------CCccccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeecccCCcc---
Q 015983           53 SSKDQLLEIHLEGTAIRG------LPASIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCSKLKN---  118 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~------lP~si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~~L~~---  118 (397)
                      ...+.|++|+|++|.|..      +...+..+++|+.|+|++ +.+..     +...+...++|++|+|++|. +..   
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~-N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~  260 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD-NTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGA  260 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS-SCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhccccccc-ccccccccccccccccccccchhhhhhcCc-cCchhh
Confidence            345678888888888762      233466777888888887 34432     34456667788888888864 322   


Q ss_pred             --CCcccC--CCCCCcEEECCCCccc
Q 015983          119 --APETLG--KVESLESAVETVTKFA  140 (397)
Q Consensus       119 --lP~~~~--~L~~L~~L~ls~n~~~  140 (397)
                        +-+.+.  ....|+.|++++|.+.
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HHHHHHhhhccCCCCCEEECCCCcCC
Confidence              111121  2246788888888765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=4.5e-05  Score=72.54  Aligned_cols=84  Identities=15%  Similarity=0.241  Sum_probs=50.4

Q ss_pred             CCCCCEEEeeCCCCC-----cCCccccCCCCCCEEEecCCCCCCC-----CChhcc-CCCcCceeeeecccCCcc-----
Q 015983           55 KDQLLEIHLEGTAIR-----GLPASIELLSGNVLLNLKDRKNLKS-----LPSTIN-GLRCLRMLHLSGCSKLKN-----  118 (397)
Q Consensus        55 l~~L~~L~Ls~~~i~-----~lP~si~~L~~L~~L~Ls~c~~l~~-----LP~~i~-~L~sL~~L~Ls~C~~L~~-----  118 (397)
                      +++++.|+|++|.|+     .+...+..+++|+.|+|++ +.+..     +...+. ...+|++|+|++|. +..     
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~-N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~  103 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS-NELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGV  103 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTT-CCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHH
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcC-CcCChHHHHHHHHHHhcCCCCCCEEECCCCC-cccccccc
Confidence            456777777777776     3344566677777777776 34432     122221 12467777777763 432     


Q ss_pred             CCcccCCCCCCcEEECCCCccc
Q 015983          119 APETLGKVESLESAVETVTKFA  140 (397)
Q Consensus       119 lP~~~~~L~~L~~L~ls~n~~~  140 (397)
                      ++..+..+++|+.|++++|.+.
T Consensus       104 l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         104 LSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCH
T ss_pred             ccchhhccccccccccccccch
Confidence            3445666777777777777654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=6.1e-05  Score=63.17  Aligned_cols=81  Identities=12%  Similarity=0.064  Sum_probs=56.2

Q ss_pred             cCCCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc-cccCCCCCCEEEecCCCCCCCC
Q 015983           17 KFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKSL   95 (397)
Q Consensus        17 ~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~L   95 (397)
                      .+|.+..|+|++|.|+.++.-.           ..+..+++|+.|+|++|.|+.++. ......+|+.|++++ |.+...
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~-----------~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~-Npl~~~  130 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMS-----------SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDG-NSLSDT  130 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGG-----------THHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTT-STTSSS
T ss_pred             hCCCCCEeeCCCccccCCchhH-----------HHHhhCCcccccccccCccccchhhhhhhccccceeecCC-CCcCcC
Confidence            3566666888888888765321           112456789999999999998876 223345799999999 556543


Q ss_pred             C--------hhccCCCcCceee
Q 015983           96 P--------STINGLRCLRMLH  109 (397)
Q Consensus        96 P--------~~i~~L~sL~~L~  109 (397)
                      .        ..+..+++|+.||
T Consensus       131 ~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         131 FRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSSHHHHHHHHHTTSTTCCEET
T ss_pred             cccchhHHHHHHHHCCCCCEEC
Confidence            2        2255788999886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.00  E-value=0.00014  Score=67.64  Aligned_cols=60  Identities=13%  Similarity=0.092  Sum_probs=26.6

Q ss_pred             CCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeecccCCcc------CCcccCCCCCCcEEECCCCcc
Q 015983           78 LSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCSKLKN------APETLGKVESLESAVETVTKF  139 (397)
Q Consensus        78 L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~~L~~------lP~~~~~L~~L~~L~ls~n~~  139 (397)
                      ...|+.|.+++ +.+..     +...+.....|+.|++++|. +..      +...+..+++|+.|++++|.+
T Consensus       157 ~~~L~~l~l~~-n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i  227 (344)
T d2ca6a1         157 APPLRSIICGR-NRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTF  227 (344)
T ss_dssp             CCCCCEEECCS-SCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             Ccccceeeccc-ccccccccccccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhcccccccccc
Confidence            34555555554 23321     22223344555555555542 211      122234445555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0001  Score=69.94  Aligned_cols=85  Identities=16%  Similarity=0.166  Sum_probs=52.0

Q ss_pred             CCCCCEEEeeCCCCCcC-----CccccCCCCCCEEEecCCCCCC-----CCChhcc-CCCcCceeeeecccCCcc-----
Q 015983           55 KDQLLEIHLEGTAIRGL-----PASIELLSGNVLLNLKDRKNLK-----SLPSTIN-GLRCLRMLHLSGCSKLKN-----  118 (397)
Q Consensus        55 l~~L~~L~Ls~~~i~~l-----P~si~~L~~L~~L~Ls~c~~l~-----~LP~~i~-~L~sL~~L~Ls~C~~L~~-----  118 (397)
                      ...|+.++++++.+...     ...+....+|+.|+|++| .+.     .++..+. ..+.|++|+|++| .+..     
T Consensus       311 ~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~  388 (460)
T d1z7xw1         311 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSS  388 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred             ccccccccccccchhhhhhhhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHH
Confidence            34677888887777632     223445567888888873 453     2333333 3456888888886 3432     


Q ss_pred             CCcccCCCCCCcEEECCCCcccc
Q 015983          119 APETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus       119 lP~~~~~L~~L~~L~ls~n~~~~  141 (397)
                      +++.+..+++|+.|++++|+++.
T Consensus       389 l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         389 LAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHHhcCCCCCEEECCCCcCCH
Confidence            34445556778888888887653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.31  E-value=0.0076  Score=49.95  Aligned_cols=84  Identities=18%  Similarity=0.131  Sum_probs=53.0

Q ss_pred             CCCCCCCEEEeeCCCCC-----cCCccccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeecccCCcc----
Q 015983           53 SSKDQLLEIHLEGTAIR-----GLPASIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCSKLKN----  118 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~-----~lP~si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~~L~~----  118 (397)
                      ...++|++|+|++|.+.     .+...+...+.|+.|+|++| .+..     +-..+..-++|++|++++| ....    
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n-~~~~~g~~  118 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQ-RQSVLGNQ  118 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCC-SSCCCCHH
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchHHHHHHHHHHHhCCcCCEEECCCC-cCCCccHH
Confidence            34567888888888876     23334566678888888885 4543     2233455577888888874 2222    


Q ss_pred             ----CCcccCCCCCCcEEECCCCc
Q 015983          119 ----APETLGKVESLESAVETVTK  138 (397)
Q Consensus       119 ----lP~~~~~L~~L~~L~ls~n~  138 (397)
                          +...+..-++|+.|+++.+.
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCCccEeeCcCCC
Confidence                22333445677888876653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.41  E-value=0.02  Score=47.30  Aligned_cols=87  Identities=13%  Similarity=0.085  Sum_probs=61.7

Q ss_pred             CCCCCCCEEEeeCC-CCC-----cCCccccCCCCCCEEEecCCCCCC-----CCChhccCCCcCceeeeecccCCcc---
Q 015983           53 SSKDQLLEIHLEGT-AIR-----GLPASIELLSGNVLLNLKDRKNLK-----SLPSTINGLRCLRMLHLSGCSKLKN---  118 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~-~i~-----~lP~si~~L~~L~~L~Ls~c~~l~-----~LP~~i~~L~sL~~L~Ls~C~~L~~---  118 (397)
                      .+.++|++|+|+++ .+.     .+-..+...+.|+.|+|++| .+.     .+-..+...+.|+.|+|++| .+..   
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~   89 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPELL   89 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehh-hcchHHH
Confidence            45678999999974 565     23345677789999999985 554     23344556689999999997 4433   


Q ss_pred             --CCcccCCCCCCcEEECCCCcccc
Q 015983          119 --APETLGKVESLESAVETVTKFAK  141 (397)
Q Consensus       119 --lP~~~~~L~~L~~L~ls~n~~~~  141 (397)
                        +-..+..-++|+.|++++|.+..
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             HHHHHHHHhCCcCCEEECCCCcCCC
Confidence              23346667889999999886543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.09  E-value=0.081  Score=43.03  Aligned_cols=85  Identities=18%  Similarity=0.164  Sum_probs=55.7

Q ss_pred             CCCCCCCEEEeeCCCCCc-----CCccccCCCCCCEEEecCCCCCC-----CCChhccCCCcCceeeeeccc-CCcc---
Q 015983           53 SSKDQLLEIHLEGTAIRG-----LPASIELLSGNVLLNLKDRKNLK-----SLPSTINGLRCLRMLHLSGCS-KLKN---  118 (397)
Q Consensus        53 ~~l~~L~~L~Ls~~~i~~-----lP~si~~L~~L~~L~Ls~c~~l~-----~LP~~i~~L~sL~~L~Ls~C~-~L~~---  118 (397)
                      ...++|++|+|++|.+..     +-..+...++|+.|++++| .+.     .+-..+...++|+.++|+.|. .++.   
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc-cccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            456788999999998862     3344667788999999874 443     233445666788877776432 3322   


Q ss_pred             --CCcccCCCCCCcEEECCCCc
Q 015983          119 --APETLGKVESLESAVETVTK  138 (397)
Q Consensus       119 --lP~~~~~L~~L~~L~ls~n~  138 (397)
                        +...+...+.|+.|+++.+.
T Consensus       122 ~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHhCCCcCEEeCcCCC
Confidence              33344566788888887664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=87.66  E-value=0.1  Score=42.42  Aligned_cols=83  Identities=13%  Similarity=0.060  Sum_probs=56.2

Q ss_pred             CCCCCCCEEEeeC-CCCC-----cCCccccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeecccCC----c
Q 015983           53 SSKDQLLEIHLEG-TAIR-----GLPASIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCSKL----K  117 (397)
Q Consensus        53 ~~l~~L~~L~Ls~-~~i~-----~lP~si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~~L----~  117 (397)
                      .+.+.|++|+|++ +.|+     .+-..+...++|+.|+|++| .+..     +-..+...++|+.|++++|..-    .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            5678899999997 4575     23344667889999999995 5543     2334556789999999986432    1


Q ss_pred             cCCcccCCCCCCcEEECCC
Q 015983          118 NAPETLGKVESLESAVETV  136 (397)
Q Consensus       118 ~lP~~~~~L~~L~~L~ls~  136 (397)
                      .+-..+...++|+.++++.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDN  111 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCC
T ss_pred             HHHHHHHhCccccEEeecc
Confidence            2334455667788766653