Citrus Sinensis ID: 015997

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------

MKETCVSFSSSSRYSAKISQVLHLDNAGIGIRRGRRSIVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVVASLFCFYIISILCMVWW

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccEEEEEEcccEEccccccccHHHHHHHHHHHHHHcccccccccccEEcccccccEEEEEcccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccHHHHHHHHHHHHHccHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHcccEEEEEEcccccccccccHHHHHHccccccccccccHHHHHHHHccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcc

ccccEcccccccccccccEEEccccccccccccccEEEEEccccccccccccccccHHHHHHHHHcccccHHHcEEccccccccEEccccccccHHHHHHHHHHHHHHcccccEcccccEEEEEccccEEEEccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccccHHHccccccHHHHHHHHHcccccccccHHHHcEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccccccccccEEEcccccHHHHHHHHHcccEEEEEEcccEEEcccccHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc

mketcvsfssssrysakISQVLHldnagigirrgrrsivaaspptedavvvtepltkeDLVGYlasgckpkekwrigtehekfgfefgtlhpmKYEQIAELLNSIAERfdwekvmeGDYIIglkqgkqsislepggqfelsgapletLHQTCAEVNSHLYQVKAVAEEMGIgflgigfqpkwglkdipvmpkgRYEIMRNYmpkvgslgLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATalfanspftegkpngylsmrshiwtdtdnnragmlpfvfddsfgfeqYVDYALDVPMYFVYRKKkyidcagmsFRDFlagklpclpgelptlndwenhlttifpeVRLKRYLEmrgadggpwrrlcalpAFWVVASLFCFYIISILCMVWW

mketcvsfssssrysakisqvlhldnagigirrgrrsivaaspptedavvvtepltkedlvgylasgckpkekwriGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLgigfqpkwglKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVVASLFCFYIISILCMVWW

MKETCVSFSSSSRYSAKISQVLHLDNAgigirrgrrsiVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVVASLFCFYIISILCMVWW

*****************ISQVLHLDNAGIGIRRGRRSIVAA***TEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISL**GGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVVASLFCFYIISILCMVWW

********************************************************KEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVVASLFCFYIISILCMVWW

**************SAKISQVLHLDNAGIGIRRGRRSIVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVVASLFCFYIISILCMVWW

****CVSFSSSSRYSAKISQVLHLDNAGIGIRRGRRSIVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVVASLFCFYIISILCMVWW

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		397	2.2.26 [Sep-21-2011]
O22493		523	Glutamate--cysteine ligas	N/A	no	0.954	0.724	0.883	0.0
Q1W2L8		522	Glutamate--cysteine ligas	N/A	no	0.952	0.724	0.905	0.0
Q9ZNX6		508	Glutamate--cysteine ligas	N/A	no	0.937	0.732	0.850	0.0
O23736		514	Glutamate--cysteine ligas	N/A	no	0.931	0.719	0.849	0.0
P46309		522	Glutamate--cysteine ligas	yes	no	0.926	0.704	0.857	0.0
Q688Q9		492	Glutamate--cysteine ligas	yes	no	0.874	0.705	0.870	0.0
Q8GU95		492	Glutamate--cysteine ligas	N/A	no	0.874	0.705	0.873	0.0
A2YL07		496	Glutamate--cysteine ligas	N/A	no	0.851	0.681	0.881	0.0
Q6Z3A3		496	Glutamate--cysteine ligas	yes	no	0.851	0.681	0.878	0.0
O69672		432	Glutamate--cysteine ligas	yes	no	0.717	0.659	0.288	2e-24

>sp\|O22493\|GSH1_SOLLC Glutamate--cysteine ligase, chloroplastic OS=Solanum lycopersicum GN=GSH1 PE=2 SV=1	Back alignment and function desciption

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/379 (88%), Positives = 352/379 (92%)

Query: 1   MKETCVSFSSSSRYSAKISQVLHLDNAGIGIRRGRRSIVAASPPTEDAVVVTEPLTKEDL 60
           M+E C     SSR +++  Q  +L++ G+G RRG  +IVAASPPTEDAVV  EPLTKEDL
Sbjct: 36  MREICFGVDISSRNASRRVQGNYLNHIGVGSRRGDLTIVAASPPTEDAVVAAEPLTKEDL 95

Query: 61  VGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYI 120
           VGYLASGCK KEKWRIGTEHEKFGFEFGTL PMKY+QIA+LLN IAERFDWEKVMEGD I
Sbjct: 96  VGYLASGCKSKEKWRIGTEHEKFGFEFGTLRPMKYDQIADLLNGIAERFDWEKVMEGDKI 155

Query: 121 IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQP 180
           IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLG GFQP
Sbjct: 156 IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGTGFQP 215

Query: 181 KWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLA 240
           KWGLKDIP+MPKGRYEI+RNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLA
Sbjct: 216 KWGLKDIPIMPKGRYEIIRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLA 275

Query: 241 LQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALD 300
           LQPIATALFANSPFTEGKPNGYLS RSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALD
Sbjct: 276 LQPIATALFANSPFTEGKPNGYLSKRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALD 335

Query: 301 VPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEM 360
           VPMYFVYRKKKY+DC G+SFRDF+ GKLP +PGE PTLNDWENHLTTIFPEVRLKRYLEM
Sbjct: 336 VPMYFVYRKKKYVDCTGLSFRDFMNGKLPPIPGEYPTLNDWENHLTTIFPEVRLKRYLEM 395

Query: 361 RGADGGPWRRLCALPAFWV 379
           RGADGGPWRRLCALPAFWV
Sbjct: 396 RGADGGPWRRLCALPAFWV 414

Solanum lycopersicum (taxid: 4081)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 2

>sp\|Q1W2L8\|GSH1_TOBAC Glutamate--cysteine ligase, chloroplastic OS=Nicotiana tabacum GN=GSH1 PE=2 SV=2	Back alignment and function description

>sp\|Q9ZNX6\|GSH1_MEDTR Glutamate--cysteine ligase, chloroplastic OS=Medicago truncatula GN=GSH1 PE=2 SV=1	Back alignment and function description

>sp\|O23736\|GSH1_BRAJU Glutamate--cysteine ligase, chloroplastic OS=Brassica juncea GN=GSH1 PE=1 SV=1	Back alignment and function description

>sp\|P46309\|GSH1_ARATH Glutamate--cysteine ligase, chloroplastic OS=Arabidopsis thaliana GN=GSH1 PE=1 SV=2	Back alignment and function description

>sp\|Q688Q9\|GSH1A_ORYSJ Glutamate--cysteine ligase A, chloroplastic OS=Oryza sativa subsp. japonica GN=GSH1-1 PE=2 SV=1	Back alignment and function description

>sp\|Q8GU95\|GSH1A_ORYSI Glutamate--cysteine ligase A, chloroplastic OS=Oryza sativa subsp. indica GN=GSH1-1 PE=2 SV=2	Back alignment and function description

>sp\|A2YL07\|GSH1B_ORYSI Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. indica GN=GSH1-2 PE=3 SV=2	Back alignment and function description

>sp\|Q6Z3A3\|GSH1B_ORYSJ Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. japonica GN=GSH1-2 PE=3 SV=1	Back alignment and function description

>sp\|O69672\|GSHA_MYCTU Glutamate--cysteine ligase GshA OS=Mycobacterium tuberculosis GN=gshA PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		397
255537467		526	Glutamate--cysteine ligase, chloroplast	0.954	0.720	0.902	0.0
443680320		511	gamma-glutamylcysteine synthetase [Dimoc	0.924	0.718	0.902	0.0
224053899		526	predicted protein [Populus trichocarpa]	0.954	0.720	0.881	0.0
233142218		523	GSH1 [Solanum lycopersicum]	0.954	0.724	0.886	0.0
350536811		523	glutamate--cysteine ligase, chloroplasti	0.954	0.724	0.883	0.0
224074923		526	predicted protein [Populus trichocarpa]	0.954	0.720	0.873	0.0
118489650		526	unknown [Populus trichocarpa x Populus d	0.954	0.720	0.870	0.0
122194121		522	RecName: Full=Glutamate--cysteine ligase	0.952	0.724	0.905	0.0
401466660		518	GCS [Cestrum nocturnum]	0.954	0.731	0.883	0.0
50058088		523	gamma-glutamylcysteine synthetase [Zinni	0.926	0.703	0.891	0.0

>gi\|255537467\|ref\|XP_002509800.1\| Glutamate--cysteine ligase, chloroplast precursor, putative [Ricinus communis] gi\|223549699\|gb\|EEF51187.1\| Glutamate--cysteine ligase, chloroplast precursor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/379 (90%), Positives = 355/379 (93%)

Query: 1   MKETCVSFSSSSRYSAKISQVLHLDNAGIGIRRGRRSIVAASPPTEDAVVVTEPLTKEDL 60
           +KETCV FSS S  S KI Q+   +N+ +  RRG + IVAASPP EDAV+ TEPLTKEDL
Sbjct: 39  LKETCVRFSSLSCNSTKIPQLPSSENSWVRSRRGNQMIVAASPPIEDAVIATEPLTKEDL 98

Query: 61  VGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYI 120
           VGYLASGCKPKEKWRIGTEHEKFGFE GTL PMKYEQIAELLN IAERFDWEKVMEGDYI
Sbjct: 99  VGYLASGCKPKEKWRIGTEHEKFGFELGTLRPMKYEQIAELLNGIAERFDWEKVMEGDYI 158

Query: 121 IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQP 180
           IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAV EEMGIGFLGIGFQP
Sbjct: 159 IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVTEEMGIGFLGIGFQP 218

Query: 181 KWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLA 240
           KWG+KDIP+MPKGRYEIMRNYMPKVG+LGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLA
Sbjct: 219 KWGVKDIPIMPKGRYEIMRNYMPKVGTLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLA 278

Query: 241 LQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALD 300
           LQPIATALFANSPFTEGKPNGYLSMRS IWTDTD +R GMLPFVFDDSFGFEQYVDYALD
Sbjct: 279 LQPIATALFANSPFTEGKPNGYLSMRSQIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALD 338

Query: 301 VPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEM 360
           VPMYFVYRKKKYIDC GM+FRDFLAGKLPC+PGELPTLNDWENHLTTIFPEVRLKRYLEM
Sbjct: 339 VPMYFVYRKKKYIDCTGMTFRDFLAGKLPCIPGELPTLNDWENHLTTIFPEVRLKRYLEM 398

Query: 361 RGADGGPWRRLCALPAFWV 379
           RGADGGPWRRLCALPAFWV
Sbjct: 399 RGADGGPWRRLCALPAFWV 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|443680320\|gb\|AFF18844.2\| gamma-glutamylcysteine synthetase [Dimocarpus longan]	Back alignment and taxonomy information

>gi\|224053899\|ref\|XP_002298035.1\| predicted protein [Populus trichocarpa] gi\|222845293\|gb\|EEE82840.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|233142218\|gb\|ACQ91100.1\| GSH1 [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|350536811\|ref\|NP_001234010.1\| glutamate--cysteine ligase, chloroplastic [Solanum lycopersicum] gi\|3913791\|sp\|O22493.1\|GSH1_SOLLC RecName: Full=Glutamate--cysteine ligase, chloroplastic; AltName: Full=Gamma-ECS; Short=GCS; AltName: Full=Gamma-glutamylcysteine synthetase; Flags: Precursor gi\|2407615\|gb\|AAB71230.1\| gamma-glutamylcysteine synthetase [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|224074923\|ref\|XP_002304493.1\| predicted protein [Populus trichocarpa] gi\|222841925\|gb\|EEE79472.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|118489650\|gb\|ABK96626.1\| unknown [Populus trichocarpa x Populus deltoides]	Back alignment and taxonomy information

>gi\|122194121\|sp\|Q1W2L8.2\|GSH1_TOBAC RecName: Full=Glutamate--cysteine ligase, chloroplastic; AltName: Full=Gamma-ECS; Short=GCS; AltName: Full=Gamma-glutamylcysteine synthetase; Flags: Precursor gi\|111380512\|gb\|ABD98695.2\| chloroplast gamma-glutamylcysteine synthetase [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|401466660\|gb\|AFP93564.1\| GCS [Cestrum nocturnum]	Back alignment and taxonomy information

>gi\|50058088\|dbj\|BAD27390.1\| gamma-glutamylcysteine synthetase [Zinnia elegans]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		397
TAIR\|locus:2127173		522	GSH1 "glutamate-cysteine ligas	0.942	0.716	0.839	6.9e-173
TIGR_CMR\|SPO_3626		456	SPO_3626 "glutamate--cysteine	0.821	0.714	0.624	2.1e-116
UNIPROTKB\|O69672		432	gshA "Glutamate--cysteine liga	0.642	0.590	0.300	2.2e-23
UNIPROTKB\|A0R5N1		423	gshA "Glutamate--cysteine liga	0.659	0.619	0.305	8.4e-22

TAIR\|locus:2127173 GSH1 "glutamate-cysteine ligase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1680 (596.4 bits), Expect = 6.9e-173, P = 6.9e-173
 Identities = 318/379 (83%), Positives = 337/379 (88%)

Query:     1 MKETCVSFSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDL 60
             MKE   +F SS  YS  +S    L ++           VAASPPTE+AVV TEPLT+EDL
Sbjct:    40 MKE---AFGSS--YSRSLSTKSMLLHSVKRSKRGHQLIVAASPPTEEAVVATEPLTREDL 94

Query:    61 VGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYI 120
             + YLASGCK K+K+RIGTEHEKFGFE  TL PMKY+QIAELLN IAERF+WEKVMEGD I
Sbjct:    95 IAYLASGCKTKDKYRIGTEHEKFGFEVNTLRPMKYDQIAELLNGIAERFEWEKVMEGDKI 154

Query:   121 IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQP 180
             IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQP
Sbjct:   155 IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQP 214

Query:   181 KWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLA 240
             KW  +DIP+MPKGRY+IMRNYMPKVG+LGLDMM RTCTVQVNLDFSSEADMIRKFRAGLA
Sbjct:   215 KWRREDIPIMPKGRYDIMRNYMPKVGTLGLDMMLRTCTVQVNLDFSSEADMIRKFRAGLA 274

Query:   241 LQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALD 300
             LQPIATALFANSPFTEGKPNG+LSMRSHIWTDTD +R GMLPFVFDDSFGFEQYVDYALD
Sbjct:   275 LQPIATALFANSPFTEGKPNGFLSMRSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALD 334

Query:   301 VPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEM 360
             VPMYF YRK KYIDC GM+FR FLAGKLPCLPGELP+ NDWENHLTTIFPEVRLKRYLEM
Sbjct:   335 VPMYFAYRKNKYIDCTGMTFRQFLAGKLPCLPGELPSYNDWENHLTTIFPEVRLKRYLEM 394

Query:   361 RGADGGPWRRLCALPAFWV 379
             RGADGGPWRRLCALPAFWV
Sbjct:   395 RGADGGPWRRLCALPAFWV 413

GO:0004357 "glutamate-cysteine ligase activity" evidence=IEA;IMP;IDA

GO:0006750 "glutathione biosynthetic process" evidence=IEA;IMP;IDA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009908 "flower development" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP;IMP;RCA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0002213 "defense response to insect" evidence=IMP

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

GO:0009700 "indole phytoalexin biosynthetic process" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

TIGR_CMR\|SPO_3626 SPO_3626 "glutamate--cysteine ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

UNIPROTKB\|O69672 gshA "Glutamate--cysteine ligase GshA" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|A0R5N1 gshA "Glutamate--cysteine ligase GshA" [Mycobacterium smegmatis str. MC2 155 (taxid:246196)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22493	GSH1_SOLLC	6, ., 3, ., 2, ., 2	0.8839	0.9546	0.7246	N/A	no
Q9ZNX6	GSH1_MEDTR	6, ., 3, ., 2, ., 2	0.8503	0.9370	0.7322	N/A	no
Q688Q9	GSH1A_ORYSJ	6, ., 3, ., 2, ., 2	0.8703	0.8740	0.7052	yes	no
A2YL07	GSH1B_ORYSI	6, ., 3, ., 2, ., 2	0.8816	0.8513	0.6814	N/A	no
Q1W2L8	GSH1_TOBAC	6, ., 3, ., 2, ., 2	0.9050	0.9521	0.7241	N/A	no
Q8GU95	GSH1A_ORYSI	6, ., 3, ., 2, ., 2	0.8731	0.8740	0.7052	N/A	no
Q6Z3A3	GSH1B_ORYSJ	6, ., 3, ., 2, ., 2	0.8786	0.8513	0.6814	yes	no
O23736	GSH1_BRAJU	6, ., 3, ., 2, ., 2	0.8496	0.9319	0.7198	N/A	no
P46309	GSH1_ARATH	6, ., 3, ., 2, ., 2	0.8571	0.9269	0.7049	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.2	0.991
3rd Layer	6.3.2	0.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		397
PLN02611		482	PLN02611, PLN02611, glutamate--cysteine ligase	0.0
TIGR01436		446	TIGR01436, glu_cys_lig_pln, glutamate--cysteine li	0.0
COG3572		456	COG3572, GshA, Gamma-glutamylcysteine synthetase [	1e-177
pfam04107		289	pfam04107, GCS2, Glutamate-cysteine ligase family	3e-97
TIGR03444		390	TIGR03444, EgtA_Cys_ligase, ergothioneine biosynth	4e-37
PRK13517		373	PRK13517, PRK13517, carboxylate-amine ligase; Prov	5e-08
TIGR02050		287	TIGR02050, gshA_cyan_rel, carboxylate-amine ligase	2e-07
COG2170		369	COG2170, COG2170, Uncharacterized conserved protei	5e-06
PRK13515		371	PRK13515, PRK13515, carboxylate-amine ligase; Prov	0.001

>gnl\|CDD\|178221 PLN02611, PLN02611, glutamate--cysteine ligase	Back alignment and domain information

 Score =  793 bits (2049), Expect = 0.0
 Identities = 313/369 (84%), Positives = 329/369 (89%)

Query: 11  SSRYSAKISQVLHLDNAGIGIRRGRRSIVAASPPTEDAVVVTEPLTKEDLVGYLASGCKP 70
           S+   A+       D+     RRGR  IVAASPPTE+AVV TEPLTKEDLV YLASGCKP
Sbjct: 5   SAAGRARHVSAPSSDSRRRTTRRGRSVIVAASPPTEEAVVATEPLTKEDLVAYLASGCKP 64

Query: 71  KEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSI 130
           KEKWRIGTEHEKFGFE  TL PMKY+QIA+LL  +AERF WEK+MEGD IIGLKQ  QS+
Sbjct: 65  KEKWRIGTEHEKFGFELATLRPMKYDQIAQLLEGLAERFGWEKIMEGDNIIGLKQDGQSV 124

Query: 131 SLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVM 190
           SLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKW + DIP+M
Sbjct: 125 SLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWSVADIPIM 184

Query: 191 PKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFA 250
           PKGRY+IMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSE DM+RKFR GLALQPIATALFA
Sbjct: 185 PKGRYKIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEQDMVRKFRVGLALQPIATALFA 244

Query: 251 NSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKK 310
           NSPFTEGKPNGYLS RSHIWTDTD +R GMLPFVFDD FGFE+YVDYALDVPMYFVYR  
Sbjct: 245 NSPFTEGKPNGYLSYRSHIWTDTDKDRTGMLPFVFDDDFGFERYVDYALDVPMYFVYRNG 304

Query: 311 KYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRR 370
           KYIDC GMSFRDF+AGKLP LPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRR
Sbjct: 305 KYIDCTGMSFRDFMAGKLPQLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRR 364

Query: 371 LCALPAFWV 379
           LCALPAFWV
Sbjct: 365 LCALPAFWV 373

Length = 482

>gnl\|CDD\|130503 TIGR01436, glu_cys_lig_pln, glutamate--cysteine ligase, plant type	Back alignment and domain information

>gnl\|CDD\|226102 COG3572, GshA, Gamma-glutamylcysteine synthetase [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|217898 pfam04107, GCS2, Glutamate-cysteine ligase family 2(GCS2)	Back alignment and domain information

>gnl\|CDD\|234213 TIGR03444, EgtA_Cys_ligase, ergothioneine biosynthesis glutamate--cysteine ligase EgtA	Back alignment and domain information

>gnl\|CDD\|237408 PRK13517, PRK13517, carboxylate-amine ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|233699 TIGR02050, gshA_cyan_rel, carboxylate-amine ligase, YbdK family	Back alignment and domain information

>gnl\|CDD\|225081 COG2170, COG2170, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|237406 PRK13515, PRK13515, carboxylate-amine ligase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		397
PLN02611		482	glutamate--cysteine ligase	100.0
TIGR01436		446	glu_cys_lig_pln glutamate--cysteine ligase, plant	100.0
COG3572		456	GshA Gamma-glutamylcysteine synthetase [Coenzyme m	100.0
TIGR03444		390	gshA_related glutamate--cysteine ligase family pro	100.0
TIGR02050		287	gshA_cyan_rel uncharacterized enzyme. This family	100.0
PRK13517		373	carboxylate-amine ligase; Provisional	100.0
PRK13516		373	gamma-glutamyl:cysteine ligase; Provisional	100.0
PRK13518		357	carboxylate-amine ligase; Provisional	100.0
PRK13515		371	carboxylate-amine ligase; Provisional	100.0
PF04107		288	GCS2: Glutamate-cysteine ligase family 2(GCS2); In	100.0
TIGR02048		376	gshA_cyano glutamate--cysteine ligase, cyanobacter	100.0
COG2170		369	Uncharacterized conserved protein [Function unknow	100.0
PRK02471		752	bifunctional glutamate--cysteine ligase/glutathion	99.95
PRK02107		523	glutamate--cysteine ligase; Provisional	98.58
PF04262		377	Glu_cys_ligase: Glutamate-cysteine ligase ; InterP	98.53
PF03074		371	GCS: Glutamate-cysteine ligase; InterPro: IPR00430	98.5
KOG3754		640	consensus Gamma-glutamylcysteine synthetase [Coenz	98.47
TIGR01434		512	glu_cys_ligase glutamate--cysteine ligase. serve t	98.42
COG2918		518	GshA Gamma-glutamylcysteine synthetase [Coenzyme m	98.13
TIGR01435		737	glu_cys_lig_rel glutamate--cysteine ligase/gamma-g	97.95
PLN02284		354	glutamine synthetase	97.75
PLN03036		432	glutamine synthetase; Provisional	97.64
PF12224		252	Amidoligase_2: Putative amidoligase enzyme; InterP	97.51
COG0174		443	GlnA Glutamine synthetase [Amino acid transport an	97.5
TIGR03105		435	gln_synth_III glutamine synthetase, type III. This	97.35
PRK09469		469	glnA glutamine synthetase; Provisional	97.34
PF00120		259	Gln-synt_C: Glutamine synthetase, catalytic domain	97.15
TIGR00653		460	GlnA glutamine synthetase, type I. Alternate name:	97.15
PF14395		261	COOH-NH2_lig: Phage phiEco32-like COOH.NH2 ligase-	90.63

>PLN02611 glutamate--cysteine ligase	Back alignment and domain information

Probab=100.00  E-value=9.8e-97  Score=753.88  Aligned_cols=371  Identities=85%  Similarity=1.384  Sum_probs=361.1

Q ss_pred             cccccccccCceeeeecCCCCCCcccCCCCCCHHHHHHHHHcCCCCCCCCeeEEEecccccccCCCCCCChhHHHHHHHH
Q 015997           25 DNAGIGIRRGRRSIVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNS  104 (397)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~iGvElE~~lVD~~t~~p~~~~~i~~lL~~  104 (397)
                      ++....++|++++|||++|++++++++++++|+++|++||++|||++++++||+|+|+|++|..+.+|++|.+|.++|+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~~gck~~~~~~iG~E~E~f~~~~~~~~pv~y~~i~~lL~~   98 (482)
T PLN02611         19 DSRRRTTRRGRSVIVAASPPTEEAVVATEPLTKEDLVAYLASGCKPKEKWRIGTEHEKFGFELATLRPMKYDQIAQLLEG   98 (482)
T ss_pred             ccccccccccccceecCCCcchhhcccCCCCCHHHHHHHHHhcCCCCCCCeeEEeeeeeeccCCCCCCCCHHHHHHHHHH
Confidence            34455789999999999999999999999999999999999999999999999999999999888999999999999999


Q ss_pred             HhhccccchhccCccccccccCCceeeecCCceeEeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEeccCCCCCCC
Q 015997          105 IAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGL  184 (397)
Q Consensus       105 l~~~~~~~~~~~~g~~i~l~~e~~~itlEp~~qiElst~p~~~l~~l~~el~~~l~~l~~aa~~~G~~l~~~G~~P~~~~  184 (397)
                      +.++++|++++|+|++|++.+++.+||+|||+|||+|++||.+++++++++.+++++++++|+++|+++++.|+||++++
T Consensus        99 l~~~~gw~~~~e~g~iIgl~~~g~~ITlEPGgQiElSt~p~~si~e~~~el~~~~~~l~~~a~~~Gl~l~g~G~hP~~~~  178 (482)
T PLN02611         99 LAERFGWEKIMEGDNIIGLKQDGQSVSLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWSV  178 (482)
T ss_pred             HHHhcCCceeccCCceecccCCCCceEecccceEEecccCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeEccCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHhcccccchhhhhhcccceeEeeeCCCCHHHHHHHHHHHhhhHHHHHHHhhCCCCCCCCCCCCcc
Q 015997          185 KDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLS  264 (397)
Q Consensus       185 ~~~~i~p~~RY~~m~~~~~~~g~~g~~~m~~t~s~qVhl~~~~~~~~~~~~n~~~~l~P~llALsANSPf~~G~~tg~~s  264 (397)
                      .+++++||+||+.|.++|++.|..|++||+.|||+|||||+++++++++++|.+++++|+++|||||||||+|++|||+|
T Consensus       179 ~~~~i~pk~RY~~M~~y~~~~g~~g~~MM~~t~g~QVhvd~~seed~v~~~~~~~~l~Pvl~ALfANSPf~eG~~tG~~S  258 (482)
T PLN02611        179 ADIPIMPKGRYKIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEQDMVRKFRVGLALQPIATALFANSPFTEGKPNGYLS  258 (482)
T ss_pred             ccccCCCChHHHHHHHHHHHhhhhhhhhccceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCCcc
Confidence            99999999999999999988888999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhcCCceeEeecCccccCCCCcHHHHhhCCCCCCCCCCCChhhhhhh
Q 015997          265 MRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENH  344 (397)
Q Consensus       265 ~R~~iw~~~~~~Rtg~~P~~f~~~~~~e~y~~~ll~~p~i~v~r~~~~~~~~~~~f~d~~~~~~~~~~g~~p~l~dl~~H  344 (397)
                      +|+.+|+++|++|||++|+.|+++++|++|+++++++|||||+|+|.|+++.+.||+|||+++.+.++|+.||++||++|
T Consensus       259 ~R~~iW~~~D~~rtg~~P~~F~d~~~fe~yv~~~Ld~Pm~fv~r~g~~~~~~g~tFrd~~~g~~~~~~~~~pt~~D~~~H  338 (482)
T PLN02611        259 YRSHIWTDTDKDRTGMLPFVFDDDFGFERYVDYALDVPMYFVYRNGKYIDCTGMSFRDFMAGKLPQLPGELPTLNDWENH  338 (482)
T ss_pred             hHHHHHHhcCCCCCCCCCCcCCChhHHHHHHHHHHCCCeEEEEeCCceecCCCCCHHHHHcCcCccCCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999887778999999999999


Q ss_pred             ccCCCCCCCccCeeeeecCCCCChHHHhHHHHHHHHHHhchhhhHHHHhhh
Q 015997          345 LTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVVASLFCFYIISILCMV  395 (397)
Q Consensus       345 lstifp~vR~r~~IEiR~~Da~P~~~~~A~aAf~~GLl~~~~~~~~~~~~~  395 (397)
                      +||+|||||+|+|||||++|+||+.++||++|||+||+|+...|+..++++
T Consensus       339 LSt~FP~VRlK~~lE~R~aDa~P~~~~~a~~A~~~GLlyd~~al~~a~~l~  389 (482)
T PLN02611        339 LTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEESLQSALDMI  389 (482)
T ss_pred             HhcCCCCccccceEEeccccCCChhhhhhHHHHHHHHhcCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999887

>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type	Back alignment and domain information

>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03444 gshA_related glutamate--cysteine ligase family protein	Back alignment and domain information

>TIGR02050 gshA_cyan_rel uncharacterized enzyme	Back alignment and domain information

>PRK13517 carboxylate-amine ligase; Provisional	Back alignment and domain information

>PRK13516 gamma-glutamyl:cysteine ligase; Provisional	Back alignment and domain information

>PRK13518 carboxylate-amine ligase; Provisional	Back alignment and domain information

>PRK13515 carboxylate-amine ligase; Provisional	Back alignment and domain information

>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6	Back alignment and domain information

>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative	Back alignment and domain information

>COG2170 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional	Back alignment and domain information

>PRK02107 glutamate--cysteine ligase; Provisional	Back alignment and domain information

>PF04262 Glu_cys_ligase: Glutamate-cysteine ligase ; InterPro: IPR007370 This is a group of bacterial glutamate-cysteine ligases that carry out the first step of the glutathione biosynthesis pathway according to the following equation: ATP + L-glutamate + L-cysteine = ADP + phosphate + L-glutamyl-L-cysteine (L-aminohexanoate can replace glutamate)	Back alignment and domain information

>PF03074 GCS: Glutamate-cysteine ligase; InterPro: IPR004308 This family represents the catalytic subunit of glutamate-cysteine ligase (6	Back alignment and domain information

>KOG3754 consensus Gamma-glutamylcysteine synthetase [Coenzyme transport and metabolism]	Back alignment and domain information

>TIGR01434 glu_cys_ligase glutamate--cysteine ligase	Back alignment and domain information

>COG2918 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type	Back alignment and domain information

>PLN02284 glutamine synthetase	Back alignment and domain information

>PLN03036 glutamine synthetase; Provisional	Back alignment and domain information

>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) []	Back alignment and domain information

>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR03105 gln_synth_III glutamine synthetase, type III	Back alignment and domain information

>PRK09469 glnA glutamine synthetase; Provisional	Back alignment and domain information

>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6	Back alignment and domain information

>TIGR00653 GlnA glutamine synthetase, type I	Back alignment and domain information

>PF14395 COOH-NH2_lig: Phage phiEco32-like COOH	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		397
2gwd_A		449	Crystal Structure Of Plant Glutamate Cysteine Ligas		0.0
2gwc_A		449	Crystal Structure Of Plant Glutamate Cysteine Ligas		1e-172

>pdb|2GWD|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In Complex With Mg2+ And L-glutamate Length = 449

Back alignment and structure

Iteration: 1

Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/340 (90%), Positives = 321/340 (94%) Query: 40 AASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIA 99 AASPPTE+AVV TEPLT+EDL+ YLASGCK KEKWRIGTEHEKFGFE TL PMKY+QIA Sbjct: 1 AASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQIA 60 Query: 100 ELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL 159 ELLNSIAERF+WEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL Sbjct: 61 ELLNSIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL 120 Query: 160 YQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTV 219 YQVKAVAEEMGIGFLG+GFQPKW +DIP MPKGRY+IMRNYMPKVGSLGLDMM RTCTV Sbjct: 121 YQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMRNYMPKVGSLGLDMMLRTCTV 180 Query: 220 QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAG 279 QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNG+LSMRSHIWTDTD +R G Sbjct: 181 QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTDTDKDRTG 240 Query: 280 MLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLN 339 MLPFVFDDSFGFEQYVDYALDVPMYF YR KY+DC GM+FR FLAGKLPCLPGELPT N Sbjct: 241 MLPFVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLPGELPTYN 300 Query: 340 DWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWV 379 DWENHLTTIFPEVRLKRY+EMRGADGGPWRRLCALPAFWV Sbjct: 301 DWENHLTTIFPEVRLKRYMEMRGADGGPWRRLCALPAFWV 340

PyMOL of 2gwd

>pdb|2GWC|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In Complex With A Transition State Analogue Length = 449

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		397
2gwd_A		449	Glutamate cysteine ligase; disulfide bridges, glut	1e-115
1r8g_A		372	Hypothetical protein YBDK; structural genomics, un	6e-37
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A* Length = 449	Back alignment and structure

 Score =  341 bits (875), Expect = e-115
 Identities = 307/339 (90%), Positives = 320/339 (94%)

Query: 40  AASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIA 99
           AASPPTE+AVV TEPLT+EDL+ YLASGCK KEKWRIGTEHEKFGFE  TL PMKY+QIA
Sbjct: 1   AASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQIA 60

Query: 100 ELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL 159
           ELLNSIAERF+WEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL
Sbjct: 61  ELLNSIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL 120

Query: 160 YQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTV 219
           YQVKAVAEEMGIGFLG+GFQPKW  +DIP MPKGRY+IMRNYMPKVGSLGLDMM RTCTV
Sbjct: 121 YQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMRNYMPKVGSLGLDMMLRTCTV 180

Query: 220 QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAG 279
           QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNG+LSMRSHIWTDTD +R G
Sbjct: 181 QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTDTDKDRTG 240

Query: 280 MLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLN 339
           MLPFVFDDSFGFEQYVDYALDVPMYF YR  KY+DC GM+FR FLAGKLPCLPGELPT N
Sbjct: 241 MLPFVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLPGELPTYN 300

Query: 340 DWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFW 378
           DWENHLTTIFPEVRLKRY+EMRGADGGPWRRLCALPAFW
Sbjct: 301 DWENHLTTIFPEVRLKRYMEMRGADGGPWRRLCALPAFW 339

PyMOL of 2gwd

>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A Length = 372	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		397
2gwd_A		449	Glutamate cysteine ligase; disulfide bridges, glut	100.0
1r8g_A		372	Hypothetical protein YBDK; structural genomics, un	100.0
3ln6_A		750	Glutathione biosynthesis bifunctional protein GSH;	99.95
1va6_A		518	Glutamate--cysteine ligase; glutathione homeostasi	99.93
3ln7_A		757	Glutathione biosynthesis bifunctional protein GSH;	99.9
3nzt_A		525	Glutamate--cysteine ligase; structural genomics, c	99.84
3ig5_A		692	Glutamate-cysteine ligase; glutathione, ATP-grAsp,	99.81
2d3a_A		356	Glutamine synthetase; ligase; HET: P3S ADP; 2.63A	97.41
3fky_A		370	Glutamine synthetase; beta-grAsp, catalytic domain	97.35
2ojw_A		384	Glutamine synthetase; amino-acid biosynthesis, lig	97.29
1f52_A		468	Glutamine synthetase; ADP, MPD, ligase; HET: ADP;	97.23
4hpp_A		443	Probable glutamine synthetase; glutamine synthase	97.18
3qaj_A		444	Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G	97.03
3ng0_A		473	Glutamine synthetase; GSI, nitrogen metabolism, sy	96.76
4acf_A		486	Glutamine synthetase 1; ligase, nucleotide-binding	96.71
3o6x_A		729	Glutamine synthetase; type III, beta barrel,dodeca	96.3
2j9i_A		421	Glutamate-ammonia ligase domain-containing protein	92.21

>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*	Back alignment and structure

Probab=100.00  E-value=2.2e-78  Score=622.35  Aligned_cols=354  Identities=88%  Similarity=1.432  Sum_probs=325.7

Q ss_pred             ecCCCCCCcccCCCCCCHHHHHHHHHcCCCCCCCCeeEEEecccccccCCCCCCChhHHHHHHHHHhhccccchhccCcc
Q 015997           40 AASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDY  119 (397)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~k~~~~~~iGvElE~~lVD~~t~~p~~~~~i~~lL~~l~~~~~~~~~~~~g~  119 (397)
                      |||||+++++..+++.++++|++||++|||++++++||+|+|+++||.+|++++++..+.++|+.+.+.++|++..++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iGvE~E~~lVd~~~~~~~~~~~~~~lL~~l~~~~g~~~~~~~~~   80 (449)
T 2gwd_A            1 AASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQIAELLNSIAERFEWEKVMEGDK   80 (449)
T ss_dssp             -------------CCCCHHHHHHHHHTTCCCGGGCCEEEEEEEEEEETTTCCBCCHHHHHHHHHHHHHHHTCEEEEETTE
T ss_pred             CCCCCCcccccCCCccCHHHHHHHHHhcCCCCCCCeEEEEeEEEeeecCCCCCCChHHHHHHHHHHHHhhccCccccccc
Confidence            68999999999999999999999999999999999999999999999988999997656899999988788888888999


Q ss_pred             ccccccCCceeeecCCceeEeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEeccCCCCCCCCCCCCCCchHHHHHH
Q 015997          120 IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMR  199 (397)
Q Consensus       120 ~i~l~~e~~~itlEp~~qiElst~p~~~l~~l~~el~~~l~~l~~aa~~~G~~l~~~G~~P~~~~~~~~i~p~~RY~~m~  199 (397)
                      ++++++++.+|++||++|||++|+||.++.+++++|...++.++++++++|++|+++|+||+.++.+.+++|++||+.|.
T Consensus        81 ~~~l~~~~~~i~~E~~~qiEl~t~p~~~~~e~~~~l~~~~~~~~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~m~  160 (449)
T 2gwd_A           81 IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMR  160 (449)
T ss_dssp             EEEEEETTEEEEECTTCCEEEECCCBSSHHHHHHHHHHHHHHHHHHHHHHTEEEECCSBCSSCCGGGSCCCSCHHHHHHH
T ss_pred             cccccCCCceEEecCCceEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCceeeccCCCCCCccccCCCCchHHHHHH
Confidence            99999998999999999999999999999999999999999999999999999999999999988788999999999999


Q ss_pred             HhcccccchhhhhhcccceeEeeeCCCCHHHHHHHHHHHhhhHHHHHHHhhCCCCCCCCCCCCccccHHHHhcCCCCCCC
Q 015997          200 NYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAG  279 (397)
Q Consensus       200 ~~~~~~g~~g~~~m~~t~s~qVhl~~~~~~~~~~~~n~~~~l~P~llALsANSPf~~G~~tg~~s~R~~iw~~~~~~Rtg  279 (397)
                      ++|++.|..|++||.+|||+||||++++++++++++|.++++.|+++|||||||||+|++|||+|+|+.+|+++|++|+|
T Consensus       161 ~~~~~~g~~g~~mm~~~~g~qVhl~~~~~~~~~~~~~~~~~~~P~llALsAnSPf~~G~~tg~~S~R~~~w~~~~~~r~G  240 (449)
T 2gwd_A          161 NYMPKVGSLGLDMMLRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTDTDKDRTG  240 (449)
T ss_dssp             HHGGGTCSSHHHHHHHBCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHCCBCEETTEECSCSBHHHHHTTSSCGGGCS
T ss_pred             HHHHHhchhHHHHhhcceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcCCCcchHHHHHhhCCCCcCC
Confidence            99987888999999999999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             CCCCCCCCchhHHHHHHHHhcCCceeEeecCccccCCCCcHHHHhhCCCCCCCCCCCChhhhhhhccCCCCCCCccCeee
Q 015997          280 MLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLE  359 (397)
Q Consensus       280 ~~P~~f~~~~~~e~y~~~ll~~p~i~v~r~~~~~~~~~~~f~d~~~~~~~~~~g~~p~l~dl~~Hlstifp~vR~r~~IE  359 (397)
                      .+|+.|+++++|++|+++++++|||||.++|.++++++.+|+||+.++.+.+.|+.|+++||.+|+||+|||||+|+|||
T Consensus       241 ~~p~~f~~~~~~e~yv~~l~~~~~~~v~~~g~~~~~~~~~f~~~l~~~l~~~~~~~p~~~d~~~~~st~~~~vRpk~~iE  320 (449)
T 2gwd_A          241 MLPFVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLPGELPTYNDWENHLTTIFPEVRLKRYME  320 (449)
T ss_dssp             CCGGGGSTTCSHHHHHHHHHHSCEEEEEETTEEEEEEEECHHHHHTTCCTTSTTCCCCHHHHHHHHTTCCCSEEESSSEE
T ss_pred             CCCcccCCccCHHHHHHHHHcCCceEeecCCccccCCcchHHHhhhcccccccCCCCCHHHHHhhhcccCcccCcCCceE
Confidence            88889999999999999999999999999999999999999999999888788999999999999999999999999999


Q ss_pred             eecCCCCChHHHhHHHHHHHHHHhchhhhHHHHh
Q 015997          360 MRGADGGPWRRLCALPAFWVVASLFCFYIISILC  393 (397)
Q Consensus       360 iR~~Da~P~~~~~A~aAf~~GLl~~~~~~~~~~~  393 (397)
                      +|++|+||..+++|++||++||++++..++..+.
T Consensus       321 ~R~~D~~p~~~~~a~aAl~~gL~~~~~~~~~~~~  354 (449)
T 2gwd_A          321 MRGADGGPWRRLCALPAFWVGLLYDEDVLQSVLD  354 (449)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHHHSSHHHHHHHHH
T ss_pred             eecCCCCCcHHHHHHHHHHHHHHhhHHhhhhhHh
Confidence            9999999999999999999999999877665543

PyMOL of 2gwd

>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A	Back alignment and structure

>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}	Back alignment and structure

>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*	Back alignment and structure

>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}	Back alignment and structure

>3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp}	Back alignment and structure

>3ig5_A Glutamate-cysteine ligase; glutathione, ATP-grAsp, ATP-binding, glutathione biosynthesis, nucleotide-binding, phosphoprotein; HET: GLU PGE; 2.10A {Saccharomyces cerevisiae} PDB: 3ig8_A* 3lvv_A* 3lvw_A*	Back alignment and structure

>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*	Back alignment and structure

>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}	Back alignment and structure

>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A	Back alignment and structure

>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A	Back alignment and structure

>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}	Back alignment and structure

>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}	Back alignment and structure

>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*	Back alignment and structure

>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}	Back alignment and structure

>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		397
d1r8ga_		368	d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Esch	1e-48

>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]} Length = 368	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamate-cysteine ligase family 2 (GCS2)
domain: Carboxylate-amine ligase YbdK
species: Escherichia coli [TaxId: 562]

 Score =  166 bits (421), Expect = 1e-48
 Identities = 41/314 (13%), Positives = 82/314 (26%), Gaps = 33/314 (10%)

Query: 69  KPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQ 128
              E + +G E E            +    + L++++  +                    
Sbjct: 5   HVSEPFTLGIELEMQVVNPPGYDLSQD--SSMLIDAVKNKI----------------TAG 46

Query: 129 SISLE-PGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDI 187
            +  +      EL+      ++Q   + ++    V   A +  +   G G  P    +  
Sbjct: 47  EVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQ 106

Query: 188 PVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATA 247
            V    RY+        +               V++  +S  D I          P   A
Sbjct: 107 EVCDNERYQRTLENFGYLI-----QQATVFGQHVHVGCASGDDAIYLLHGLSRFVPHFIA 161

Query: 248 LFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVY 307
           L A SP+ +G    + S R +I++   +N          +   FE          M    
Sbjct: 162 LSAASPYMQGTDTRFASSRPNIFSAFPDN---GPMPWVSNWQQFEALFRCLSYTTMIDSI 218

Query: 308 RKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGP 367
           +   + D         +  ++   P    TL+           +      L  R      
Sbjct: 219 K-DLHWDIRPSPHFGTVEVRVMDTP---LTLSHA--VNMAGLIQATAHWLLTERPFKHQE 272

Query: 368 WRRLCALPAFWVVA 381
              L      +   
Sbjct: 273 KDYLLYKFNRFQAC 286

PyMOL of d1r8ga_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		397
d1r8ga_		368	Carboxylate-amine ligase YbdK {Escherichia coli [T	100.0
d2d32a1		518	Gamma-glutamylcysteine synthetase GshA {Escherichi	98.27
d1f52a2		368	Glutamine synthetase, C-terminal domain {Salmonell	97.14
d2bvca2		374	Glutamine synthetase, C-terminal domain {Mycobacte	96.75

>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamate-cysteine ligase family 2 (GCS2)
domain: Carboxylate-amine ligase YbdK
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-49  Score=395.73  Aligned_cols=257  Identities=15%  Similarity=0.136  Sum_probs=216.4

Q ss_pred             CCCCCCCeeEEEecccccccCCCCCCChhHHHHHHHHHhhccccchhccCccccccccCCceeeec-CCceeEeecCccC
Q 015997           68 CKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLE-PGGQFELSGAPLE  146 (397)
Q Consensus        68 ~k~~~~~~iGvElE~~lVD~~t~~p~~~~~i~~lL~~l~~~~~~~~~~~~g~~i~l~~e~~~itlE-p~~qiElst~p~~  146 (397)
                      .+.++++|||||+|+++||++++.+++.+  .++|+.+.+.                ....+|+.| +++|||++|+|++
T Consensus         4 f~~~~~~tiGvE~E~~lvd~~~~~~~~~~--~~ll~~~~~~----------------~~~~~i~~El~~~qiEl~t~p~~   65 (368)
T d1r8ga_           4 FHVSEPFTLGIELEMQVVNPPGYDLSQDS--SMLIDAVKNK----------------ITAGEVKHDITESMLELATDVCR   65 (368)
T ss_dssp             CCCCCTTCEEEEEEEEEEETTTTEECSCC--HHHHTTTSSS----------------CSSSEEEECSSSSEEEEECCSBS
T ss_pred             CCCCCCCceEEEEeeeeeCCCCCccCCcH--HHHHHHhhcc----------------ccCCccccccCCceEEEcCCCCC
Confidence            46778899999999999999888888888  7888766442                224478999 7899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCeEEeccCCCCCCCCCCCCCCchHHHHHHHhcccccchhhhhhcccceeEeeeCCC
Q 015997          147 TLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFS  226 (397)
Q Consensus       147 ~l~~l~~el~~~l~~l~~aa~~~G~~l~~~G~~P~~~~~~~~i~p~~RY~~m~~~~~~~g~~g~~~m~~t~s~qVhl~~~  226 (397)
                      ++.+++++|.+.++.+..+++++|+.++++|+||+..+.+.+++|++||+.|.+++   |..+..||  +||+||||+++
T Consensus        66 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~g~~P~~~~~~~~~~~~~ry~~~~~~~---~~~~~~~~--~~g~hv~~~~~  140 (368)
T d1r8ga_          66 DINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENF---GYLIQQAT--VFGQHVHVGCA  140 (368)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CC---GGGGCSCC--BCEEEEEEECS
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCCcccccCcccccCcccccCCccHHHHHHHHhc---CcHHHHHh--hcccceeecCC
Confidence            99999999999999999999999999999999999999899999999999999988   55677777  99999999999


Q ss_pred             CHHHHHHHHHHHhhhHHHHHHHhhCCCCCCCCCCCCccccHHHHhcCCCCCCCCCCCCCCCchhHHHHHHHHhcCCceeE
Q 015997          227 SEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFV  306 (397)
Q Consensus       227 ~~~~~~~~~n~~~~l~P~llALsANSPf~~G~~tg~~s~R~~iw~~~~~~Rtg~~P~~f~~~~~~e~y~~~ll~~p~i~v  306 (397)
                      |++++++++|.++.++|+++||||||||++|++|||+|+|..+|++++   ++++|+.|.++..|++|++.++++++++ 
T Consensus       141 d~~~~~~~~~~~~~~~p~l~aL~anSP~~~G~~tg~~s~R~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  216 (368)
T d1r8ga_         141 SGDDAIYLLHGLSRFVPHFIALSAASPYMQGTDTRFASSRPNIFSAFP---DNGPMPWVSNWQQFEALFRCLSYTTMID-  216 (368)
T ss_dssp             SHHHHHHHHHHHHTTHHHHHHHHCCBCEETTEECSCSBCGGGGGTTST---TCSSCCCCSSHHHHHHHHHHHTTSSSCS-
T ss_pred             CHHHHHHHHHHHHHHhHHHHHHhcCchhhcCcCCCCcCCchhHHhcCC---cccccccccchhhHHHHHHHHHhccccc-
Confidence            999999999999999999999999999999999999999999999997   6667889999999999999998877662 


Q ss_pred             eecCccccCCCCcHHHHhhCCCCCCCCCCCChhhhhhhccCCCCCCCcc---CeeeeecCCCCC-hHHHhHHHHHHHHHH
Q 015997          307 YRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLK---RYLEMRGADGGP-WRRLCALPAFWVVAS  382 (397)
Q Consensus       307 ~r~~~~~~~~~~~f~d~~~~~~~~~~g~~p~l~dl~~Hlstifp~vR~r---~~IEiR~~Da~P-~~~~~A~aAf~~GLl  382 (397)
                                                           |.+++|++|||+   +|||+|++|++| ..+++++++|+.|++
T Consensus       217 -------------------------------------~~~~~~~~vRp~~~~~~iEiR~~D~~p~~~~~~~~aa~~~~l~  259 (368)
T d1r8ga_         217 -------------------------------------SIKDLHWDIRPSPHFGTVEVRVMDTPLTLSHAVNMAGLIQATA  259 (368)
T ss_dssp             -------------------------------------SGGGCCCSEEEETTTTEEEEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------cCCeeeeecCCccccCcccccCCCCCCCHHHHHHHhhHHHHHH
Confidence                                                 466789999997   599999999999 789999999999998


Q ss_pred             hchhhh
Q 015997          383 LFCFYI  388 (397)
Q Consensus       383 ~~~~~~  388 (397)
                      ..+.+.
T Consensus       260 ~~l~~~  265 (368)
T d1r8ga_         260 HWLLTE  265 (368)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            876654

PyMOL of d1r8ga_

>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure