Citrus Sinensis ID: 016002

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
Protein Sequence
MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQNGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKASGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTGTS
Secondary Structure (PSIPRED)
cccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHccHHHHHHcccHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHccccccccccccEEEEEEEccccccccEcccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccHHHHHccccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHccccccccccHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHccHHHHHHHccHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
menlnmalvsstspklvlnytnfkhptrgitgprrssslalpfklstsrisasvragphqngqvgaggfasltssggqqtssvgvnpnlpmpppssnvgsplfwVGVGVGLSALFSFVASRLKQYAMQQALkasgpttpypaasqprftmdipatkveaatatdvegkkevkgetevkeepkkyafvdvspeetlqkssfdnfedvketssskdaqppkdsqngaafnynagspfggqsakkegrfLTVDTLEKLmedpqvqkmvypslpeemrnpasfklMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMmanpeialgfqspRVQAAIMECSqnpmniikyqndKEVMSVITKIAElfpgvtgts
Flexible Loop (DISEMBL)
MENLNMALVSSTSPKLVLNYTNfkhptrgitgprrssslalPFKLSTSRISASVRAGPHQNGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKASGPTTPYPAASQPRFTMDIPATKVEaatatdvegkkevkgetevkeepkkyafvdvspeetlqkssfdnFEDVKEtssskdaqppkdsQNGAAFNYNAGspfggqsakkEGRFLTVDTLeklmedpqvQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAelfpgvtgts
Low Complexity Region (SEG)
MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQNGQVGAGGFASLtssggqqtssvgvnpnlpmpppssnVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKASGPTTPYPAASQPRFTMDIPATKVEAATATDvegkkevkgetevkeepkkYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTGTS
Disordered region (IsUnstruct)
***************LVLNYTNF*****************************************************************************PLFWVGVGVGLSALFSFVASRLKQYAM****************************************************************************************************************************************************************************C***EFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG*****
Disordered Region (DISOPRED)
*****************************************************************************************************LFWVGVGVGLSALFSFVASRL*********************************************************************************************************************************LEKLMEDPQVQKMVYPSLPE**R**A**********************************************************EVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE**PGV****
Disordered Region (DISEMBL)
**********STSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQNGQVGAGGFASL*********SVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKASGPTTPYPAASQPRFTMDIPATKVEA*******************EEPKKYAFVDVSPEETLQKSSFDN******************SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTGTS
Disordered Region (DISPRO)
****N***VSSTSPKL**************************************************G*****T********************PSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKA************************************************KKYAFVDVSPEETLQ*************************************************FLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFP******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQNGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKASGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTGTS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	397	2.2.26 [Sep-21-2011]
Q8GT66	436	Protein TIC 40, chloropla	N/A	no	0.962	0.876	0.539	1e-113
Q9FMD5	447	Protein TIC 40, chloropla	yes	no	0.992	0.881	0.484	4e-91
Q5ZLF0	361	Hsc70-interacting protein	yes	no	0.133	0.146	0.415	4e-06
P50503	368	Hsc70-interacting protein	yes	no	0.138	0.149	0.363	5e-05
P50502	369	Hsc70-interacting protein	yes	no	0.138	0.149	0.345	0.0002
Q5RF31	369	Hsc70-interacting protein	yes	no	0.138	0.149	0.345	0.0002
Q99L47	371	Hsc70-interacting protein	yes	no	0.138	0.148	0.345	0.0003
Q8NFI4	369	Putative protein FAM10A5	yes	no	0.138	0.149	0.345	0.0008

>sp|Q8GT66|TIC40_PEA Protein TIC 40, chloroplastic OS=Pisum sativum GN=TIC40 PE=1 SV=1

 Score =  407 bits (1047), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/447 (53%), Positives = 307/447 (68%), Gaps = 65/447 (14%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASV-RAGP- 58
           MENLN+ALVSS  P L+L +++ K+   G    R+S +    F++S +  S+ V RA   
Sbjct: 1   MENLNLALVSSPKP-LLLGHSSSKNVFSG----RKSFTFGT-FRVSANSSSSHVTRAASK 54

Query: 59  -HQN-----GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
            HQN     G+V A  FAS++SS GQ+T+SVGV+P L  PPPS+ VGSPLFW+G+GVG S
Sbjct: 55  SHQNLKSVQGKVNAHDFASISSSNGQETTSVGVSPQLSPPPPST-VGSPLFWIGIGVGFS 113

Query: 113 ALFSFVASRLKQYAMQQALKA------------------SGPTTPYP------------- 141
           ALFS VASR+K+YAMQQA K+                  SGP  P+P             
Sbjct: 114 ALFSVVASRVKKYAMQQAFKSMMGQMNTQNNPFDSGAFSSGPPFPFPMPSASGPATPAGF 173

Query: 142 -----------AASQPRFTMDIPATKVEAAT-ATDVEGKKEVKGETEVKEEPKKYAFVDV 189
                      +ASQ   T+DIPATKVEAA  A D+     VK E EVK EPKK AFVDV
Sbjct: 174 AGNQSQATSTRSASQSTVTVDIPATKVEAAAPAPDIN----VKEEVEVKNEPKKSAFVDV 229

Query: 190 SPEETLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLT 248
           SPEET+QK++F+ F+DV E+SS K+A+ P + SQNG  F    G      S +K    L+
Sbjct: 230 SPEETVQKNAFERFKDVDESSSFKEARAPAEASQNGTPFKQGFGDSPSSPSERKSA--LS 287

Query: 249 VDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGR 308
           VD LEK+MEDP VQ+MVYP LPEEMRNP++FK M+QNPEYR+QL+ ML+ M    E+D R
Sbjct: 288 VDALEKMMEDPTVQQMVYPYLPEEMRNPSTFKWMMQNPEYRQQLEAMLNNMGGGTEWDSR 347

Query: 309 VLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPM 368
           ++D+LKNFDLNS +VKQQF+QIGL+P+EVI+K+MANP++A+ FQ+PRVQAAIM+CSQNPM
Sbjct: 348 MMDTLKNFDLNSPDVKQQFDQIGLSPQEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPM 407

Query: 369 NIIKYQNDKEVMSVITKIAELFPGVTG 395
           +I+KYQNDKEVM V  KI+ELFPGV+G
Sbjct: 408 SIVKYQNDKEVMDVFNKISELFPGVSG 434

Involved in protein precursor import into chloroplasts. Part of the motor complex consisting of a co-chaperone (TIC40) and a chaperone (HSP93) associated with the import channel (TIC110). Causes the release of bound transit peptides from TIC110 and stimulates ATP hydrolysis by HSP93. Involved in reinsertion of proteins from the chloroplast stroma into the inner membrane.
Pisum sativum (taxid: 3888)

>sp|Q9FMD5|TIC40_ARATH Protein TIC 40, chloroplastic OS=Arabidopsis thaliana GN=TIC40 PE=1 SV=1

 Score =  335 bits (859), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 217/448 (48%), Positives = 281/448 (62%), Gaps = 54/448 (12%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITG-PRRSSSLALPF-KLSTSRISASVRAGP 58
           MENL +   S++SPKL++   NF    +  TG  RR+ ++ L   K+S S  S S  + P
Sbjct: 1   MENLTLVSCSASSPKLLIG-CNFTSSLKNPTGFSRRTPNIVLRCSKISASAQSQSPSSRP 59

Query: 59  HQNGQV-----GAGGFASL-TSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
              G++      +  FAS+ +SS  QQT+SV        PP SS +GSPLFW+GVGVGLS
Sbjct: 60  ENTGEIVVVKQRSKAFASIFSSSRDQQTTSVASPSVPVPPPSSSTIGSPLFWIGVGVGLS 119

Query: 113 ALFSFVASRLKQYAMQQALKA---------------------------SGPTTPYPAASQ 145
           ALFS+V S LK+YAMQ A+K                               T+P  +  Q
Sbjct: 120 ALFSYVTSNLKKYAMQTAMKTMMNQMNTQNSQFNNSGFPSGSPFPFPFPPQTSPASSPFQ 179

Query: 146 PRF-----TMDIPATKVEAAT--------ATDVEGKK--EVKGETEVKEEPKKYAFVDVS 190
            +      T+D+ ATKVE           A D+E  K   V   ++ K+E K YAF D+S
Sbjct: 180 SQSQSSGATVDVTATKVETPPSTKPKPTPAKDIEVDKPSVVLEASKEKKEEKNYAFEDIS 239

Query: 191 PEETLQKSSFDNFEDVKETSSSKDAQPPKDS-QNGA--AFNYNAGSPFGGQSAKKEGRFL 247
           PEET ++S F N+ +V ET+S K+ +  +D  QNGA  A    A   F      K G  L
Sbjct: 240 PEETTKESPFSNYAEVSETNSPKETRLFEDVLQNGAGPANGATASEVFQSLGGGKGGPGL 299

Query: 248 TVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDG 307
           +V+ LEK+MEDP VQKMVYP LPEEMRNP +FK ML+NP+YR+QLQ+ML+ M  SGE+D 
Sbjct: 300 SVEALEKMMEDPTVQKMVYPYLPEEMRNPETFKWMLKNPQYRQQLQDMLNNMSGSGEWDK 359

Query: 308 RVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNP 367
           R+ D+LKNFDLNS EVKQQF QIGLTPEEVI+K+M NP++A+ FQ+PRVQAA+MECS+NP
Sbjct: 360 RMTDTLKNFDLNSPEVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQAALMECSENP 419

Query: 368 MNIIKYQNDKEVMSVITKIAELFPGVTG 395
           MNI+KYQNDKEVM V  KI++LFPG+TG
Sbjct: 420 MNIMKYQNDKEVMDVFNKISQLFPGMTG 447

Involved in protein precursor import into chloroplasts. Part of the motor complex consisting of a co-chaperone (TIC40) and a chaperone (HSP93) associated with the import channel (TIC110). Causes the release of bound transit peptides from TIC110 and stimulates ATP hydrolysis by HSP93. Involved in reinsertion of proteins from the chloroplast stroma into the inner membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZLF0|F10A1_CHICK Hsc70-interacting protein OS=Gallus gallus GN=ST13 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 37/53 (69%)

Query: 338 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELF 390
           + +++++PE+    Q P V AA  + +QNP N+ KYQN+ +VMS+ITK++  F
Sbjct: 305 LNEILSDPEVLAAMQDPEVMAAFQDVAQNPANMSKYQNNPKVMSLITKLSAKF 357

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Gallus gallus (taxid: 9031)

>sp|P50503|F10A1_RAT Hsc70-interacting protein OS=Rattus norvegicus GN=St13 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 37/55 (67%)

Query: 338 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 392
           + +++++PE+    Q P V  A  + +QNP N+ KYQN+ +VM++I+K++  F G
Sbjct: 312 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQNNPKVMNLISKLSAKFGG 366

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Rattus norvegicus (taxid: 10116)

>sp|P50502|F10A1_HUMAN Hsc70-interacting protein OS=Homo sapiens GN=ST13 PE=1 SV=2

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query: 338 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 392
           + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct: 313 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Homo sapiens (taxid: 9606)

>sp|Q5RF31|F10A1_PONAB Hsc70-interacting protein OS=Pongo abelii GN=ST13 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query: 338 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 392
           + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct: 313 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Pongo abelii (taxid: 9601)

>sp|Q99L47|F10A1_MOUSE Hsc70-interacting protein OS=Mus musculus GN=St13 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query: 338 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 392
           + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct: 315 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQSNPKVMNLISKLSAKFGG 369

One HIP oligomer binds the ATPase domains of at least two HSC70 molecules dependent on activation of the HSC70 ATPase by HSP40. Stabilizes the ADP state of HSC70 that has a high affinity for substrate protein. Through its own chaperone activity, it may contribute to the interaction of HSC70 with various target proteins.

Mus musculus (taxid: 10090)

>sp|Q8NFI4|F10A5_HUMAN Putative protein FAM10A5 OS=Homo sapiens GN=ST13P5 PE=5 SV=1

 Score = 45.4 bits (106), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 36/55 (65%)

Query: 338 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 392
           + +++++PE     Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct: 313 LNEILSDPEALAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
224079472	429	predicted protein [Populus trichocarpa]	0.974	0.902	0.565	1e-118
5531416	436	translocon Tic40 [Pisum sativum]	0.962	0.876	0.541	1e-112
75150408	436	RecName: Full=Protein TIC 40, chloroplas	0.962	0.876	0.539	1e-111
356539740	429	PREDICTED: uncharacterized protein LOC10	0.952	0.881	0.530	1e-110
356569945	432	PREDICTED: uncharacterized protein LOC10	0.959	0.881	0.526	1e-110
255582251	465	conserved hypothetical protein [Ricinus	0.964	0.823	0.522	1e-108
94449066	460	plastid Tic40 [Ricinus communis]	0.952	0.821	0.517	1e-105
225460309	436	PREDICTED: protein TIC 40, chloroplastic	0.954	0.869	0.542	1e-99
449462371	419	PREDICTED: protein TIC 40, chloroplastic	0.727	0.689	0.570	3e-94
15237382	447	hydroxyproline-rich glycoprotein family	0.992	0.881	0.484	2e-89

>gi|224079472|ref|XP_002305876.1| predicted protein [Populus trichocarpa] gi|222848840|gb|EEE86387.1| predicted protein [Populus trichocarpa]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/437 (56%), Positives = 309/437 (70%), Gaps = 50/437 (11%)

Query: 1   MENLNMALVSSTSPKLVLNY-TNFKHPTRGITGPRRSSSL---ALPFKLSTSRISA---- 52
           MEN  +AL+SS+SPKLV+ Y T+ K+PT     P+ S S    +LPF L  S+ +     
Sbjct: 1   MENPRLALLSSSSPKLVMGYPTSLKNPTT----PKFSISTTRPSLPFSLRISKTAPHASI 56

Query: 53  -SVRAGPHQNGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGL 111
            S+ A  + +G++G+  FAS++SS G+QT+SVGVNP    PP  S +GSPLFWVGVGVGL
Sbjct: 57  FSISALANSHGKLGSEYFASISSSSGKQTASVGVNPQPVSPP-PSQIGSPLFWVGVGVGL 115

Query: 112 SALFSFVASRLKQYAMQQALK-----------------------------ASGPTT-PYP 141
           SA+FS+VA+R+K YAMQQA K                             AS P+T P P
Sbjct: 116 SAIFSWVATRVKNYAMQQAFKSLTEQMNTQNNQFNPAFSARPPFPFSPPPASHPSTSPSP 175

Query: 142 AASQPRFTMDIPATKVEAATATDVEGKKEVK--GETEVKEEPKKYAFVDVSPEETLQKSS 199
           AASQP  T+DIPATKVEAA  TDV  +KE     E ++KEE KKYAFVD+SPEET   + 
Sbjct: 176 AASQPAITVDIPATKVEAAPTTDVGKEKETDFLEERKIKEETKKYAFVDISPEETSLNTP 235

Query: 200 FDNFEDVKETSSSKDAQPPKDS-QNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMED 258
           F + ED  ETSSSKD +  K   QNGAAF    G+  G QS +    FL+V+ LEK+MED
Sbjct: 236 FSSVEDDNETSSSKDVEFAKKVFQNGAAFKQGPGAAEGSQSTRP---FLSVEALEKMMED 292

Query: 259 PQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDL 318
           P +QKMVYP LPEEMRNP +FK MLQNP+YR+QL++ML+ M  SG++D +++DSLK+FDL
Sbjct: 293 PTMQKMVYPYLPEEMRNPTTFKWMLQNPQYRQQLEDMLNNMGGSGKWDSQMMDSLKDFDL 352

Query: 319 NSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKE 378
           NSAEVKQQF+QIGLTPEEVI+K+MANP++A+ FQ+PRVQ AIMECSQNP+NI KYQNDKE
Sbjct: 353 NSAEVKQQFDQIGLTPEEVISKIMANPDVAMAFQNPRVQQAIMECSQNPINITKYQNDKE 412

Query: 379 VMSVITKIAELFPGVTG 395
           VM V  KI+ELFPG+TG
Sbjct: 413 VMDVFNKISELFPGMTG 429

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5531416|emb|CAB50925.1| translocon Tic40 [Pisum sativum]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 242/447 (54%), Positives = 306/447 (68%), Gaps = 65/447 (14%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASV-RAGP- 58
           MENLN+ALVSS  P L+L +++ K+        RR S     F++S +  S+ V RA   
Sbjct: 1   MENLNLALVSSPKP-LLLGHSSSKN-----VFSRRKSFTFGTFRVSANSSSSHVTRAASK 54

Query: 59  -HQN-----GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
            HQN     G+V A  FAS++SS GQ+T+SVGV+P L  PPPS+ VGSPLFW+G+GVG S
Sbjct: 55  SHQNLKSVQGKVNAHSFASISSSNGQETTSVGVSPQLSPPPPST-VGSPLFWIGIGVGFS 113

Query: 113 ALFSFVASRLKQYAMQQALKA------------------SGPTTPYP------------- 141
           ALFS VASR+K+YAMQQA K+                  SGP  P+P             
Sbjct: 114 ALFSVVASRVKKYAMQQAFKSMMGQMNTQNNPFDSGAFSSGPPFPFPMPSASGPATPAGF 173

Query: 142 -----------AASQPRFTMDIPATKVEAAT-ATDVEGKKEVKGETEVKEEPKKYAFVDV 189
                      +ASQ   T+DIPATKVEAA  A D+     VK E EVK EPKK AFVDV
Sbjct: 174 AGNQSQATSTRSASQSTVTVDIPATKVEAAAPAPDIN----VKEEVEVKNEPKKSAFVDV 229

Query: 190 SPEETLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLT 248
           SPEET+QK++F+ F+DV E+SS K+A+ P + SQNG  F    G   G  S +K    L+
Sbjct: 230 SPEETVQKNAFERFKDVDESSSFKEARAPAEASQNGTPFKQGFGDSPGSPSERKSA--LS 287

Query: 249 VDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGR 308
           VD LEK+MEDP VQ+MVYP LPEEMRNP++FK M+QNPEYR+QL+ ML+ M    E+D R
Sbjct: 288 VDALEKMMEDPTVQQMVYPYLPEEMRNPSTFKWMMQNPEYRQQLEAMLNNMGGGTEWDSR 347

Query: 309 VLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPM 368
           ++D+LKNFDLNS +VKQQF+QIGL+P+EVI+K+MANP++A+ FQ+PRVQAAIM+CSQNPM
Sbjct: 348 MMDTLKNFDLNSPDVKQQFDQIGLSPQEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPM 407

Query: 369 NIIKYQNDKEVMSVITKIAELFPGVTG 395
           +I+KYQNDKEVM V  KI+ELFPGV+G
Sbjct: 408 SIVKYQNDKEVMDVFNKISELFPGVSG 434

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75150408|sp|Q8GT66.1|TIC40_PEA RecName: Full=Protein TIC 40, chloroplastic; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 40; Short=PsTIC40; Flags: Precursor gi|26000725|gb|AAN75219.1| chloroplast protein translocon component Tic40 precursor [Pisum sativum]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 241/447 (53%), Positives = 307/447 (68%), Gaps = 65/447 (14%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASV-RAGP- 58
           MENLN+ALVSS  P L+L +++ K+   G    R+S +    F++S +  S+ V RA   
Sbjct: 1   MENLNLALVSSPKP-LLLGHSSSKNVFSG----RKSFTFGT-FRVSANSSSSHVTRAASK 54

Query: 59  -HQN-----GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
            HQN     G+V A  FAS++SS GQ+T+SVGV+P L  PPPS+ VGSPLFW+G+GVG S
Sbjct: 55  SHQNLKSVQGKVNAHDFASISSSNGQETTSVGVSPQLSPPPPST-VGSPLFWIGIGVGFS 113

Query: 113 ALFSFVASRLKQYAMQQALKA------------------SGPTTPYP------------- 141
           ALFS VASR+K+YAMQQA K+                  SGP  P+P             
Sbjct: 114 ALFSVVASRVKKYAMQQAFKSMMGQMNTQNNPFDSGAFSSGPPFPFPMPSASGPATPAGF 173

Query: 142 -----------AASQPRFTMDIPATKVEAAT-ATDVEGKKEVKGETEVKEEPKKYAFVDV 189
                      +ASQ   T+DIPATKVEAA  A D+     VK E EVK EPKK AFVDV
Sbjct: 174 AGNQSQATSTRSASQSTVTVDIPATKVEAAAPAPDIN----VKEEVEVKNEPKKSAFVDV 229

Query: 190 SPEETLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLT 248
           SPEET+QK++F+ F+DV E+SS K+A+ P + SQNG  F    G      S +K    L+
Sbjct: 230 SPEETVQKNAFERFKDVDESSSFKEARAPAEASQNGTPFKQGFGDSPSSPSERKSA--LS 287

Query: 249 VDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGR 308
           VD LEK+MEDP VQ+MVYP LPEEMRNP++FK M+QNPEYR+QL+ ML+ M    E+D R
Sbjct: 288 VDALEKMMEDPTVQQMVYPYLPEEMRNPSTFKWMMQNPEYRQQLEAMLNNMGGGTEWDSR 347

Query: 309 VLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPM 368
           ++D+LKNFDLNS +VKQQF+QIGL+P+EVI+K+MANP++A+ FQ+PRVQAAIM+CSQNPM
Sbjct: 348 MMDTLKNFDLNSPDVKQQFDQIGLSPQEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPM 407

Query: 369 NIIKYQNDKEVMSVITKIAELFPGVTG 395
           +I+KYQNDKEVM V  KI+ELFPGV+G
Sbjct: 408 SIVKYQNDKEVMDVFNKISELFPGVSG 434

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539740|ref|XP_003538352.1| PREDICTED: uncharacterized protein LOC100781154 [Glycine max]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/441 (53%), Positives = 287/441 (65%), Gaps = 63/441 (14%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQ 60
           ME LN+ALVSS  P L+L +     P R +   +  S   +       R   S  +  H 
Sbjct: 1   MEKLNLALVSSPKP-LMLGHV----PARDVFRRKHFSFGRVLIAPHRCRFRVSALSSSHH 55

Query: 61  N-----GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALF 115
           N      ++    FAS++SS  Q+T+S+GV P L  P PSS +GSPLFW+GVGVGLSALF
Sbjct: 56  NPKSVQEKLIVKHFASISSSNTQETTSIGVKPQL-SPSPSSTIGSPLFWIGVGVGLSALF 114

Query: 116 SFVASRLKQYAMQQALK------------------------------ASGPTTPYPAAS- 144
           S VASRLK+YAMQQA K                              A+GPT P  +A+ 
Sbjct: 115 SVVASRLKKYAMQQAFKTMMGQMNSQNNQFGNAAFSPGSPFPFPMPTAAGPTAPASSATT 174

Query: 145 -----------QPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEE 193
                      Q   T+D+PA KVEAA  T+V      K E E+K EPKK AFVDVSPEE
Sbjct: 175 QSRAPSASSASQSTITVDLPAAKVEAAPTTNV------KDEVELKNEPKKIAFVDVSPEE 228

Query: 194 TLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTL 252
           T+++S F++F+D  E+SS K+A  P + SQNGA  N   G   G QS KK    L+VD L
Sbjct: 229 TVRESPFESFKD-DESSSVKEAWVPDEVSQNGAPSNLGFGDFPGSQSTKKSA--LSVDAL 285

Query: 253 EKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDS 312
           EK+MEDP VQKMVYP LPEEMRNP +FK MLQNP+YR+QL+EML+ M  S E+D R++D+
Sbjct: 286 EKMMEDPTVQKMVYPYLPEEMRNPTTFKWMLQNPQYRQQLEEMLNNMGGSTEWDNRMMDT 345

Query: 313 LKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIK 372
           LKNFDLNS EVKQQF+QIGL+PEEVI+K+MANPE+A+ FQ+PRVQAAIM+CSQNPMNI K
Sbjct: 346 LKNFDLNSPEVKQQFDQIGLSPEEVISKIMANPEVAMAFQNPRVQAAIMDCSQNPMNITK 405

Query: 373 YQNDKEVMSVITKIAELFPGV 393
           YQNDKEVM V  KI+ELFPGV
Sbjct: 406 YQNDKEVMDVFNKISELFPGV 426

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569945|ref|XP_003553154.1| PREDICTED: uncharacterized protein LOC100790904 [Glycine max]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/441 (52%), Positives = 285/441 (64%), Gaps = 60/441 (13%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFKLSTSRISASVRAGPHQ 60
           ME LN+ALVSS  P ++ +       +R +   +  S   +       R   S  +  H+
Sbjct: 1   MEKLNLALVSSPKPLMLGHVPAIDATSRDVFRRKHFSFGRVLIAPHRCRFRVSALSSSHR 60

Query: 61  N-----GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALF 115
           N      ++    FAS++SS  Q+ +S GVNP L    PSS +GSPLFW+GVGVGLSALF
Sbjct: 61  NPKSVQEKLIVKHFASISSSNTQEATSTGVNPQLS---PSSTIGSPLFWIGVGVGLSALF 117

Query: 116 SFVASRLKQYAMQQALK------------------------------ASGPTTPYPAAS- 144
           S VASRLK+YAMQQA K                              A+GPT P  +A+ 
Sbjct: 118 SVVASRLKKYAMQQAFKTMMGQMNSQNNQFGNAAFSPGSPFPFPMPTAAGPTAPASSATT 177

Query: 145 -----------QPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEE 193
                      Q   T+DIPA KVE A  T+V      K E EVK EPKK AFVDVSPEE
Sbjct: 178 QSRAPSASSASQSTITVDIPAAKVEVAPTTNV------KDEVEVKNEPKKIAFVDVSPEE 231

Query: 194 TLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTL 252
           T+Q+S F++F+D  E+SS K+A+ P + SQNGA  N   G   G QS KK    L+VD L
Sbjct: 232 TVQESPFESFKD-DESSSVKEARVPDEVSQNGAPSNQGFGDFPGSQSTKKS--VLSVDAL 288

Query: 253 EKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDS 312
           EK+MEDP VQKMVYP LPEEMRNP +FK MLQNP+YR+QL+EML+ M  S E+D R++D+
Sbjct: 289 EKMMEDPTVQKMVYPYLPEEMRNPTTFKWMLQNPQYRQQLEEMLNNMGGSTEWDSRMMDT 348

Query: 313 LKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIK 372
           LKNFDLNS EVKQQF+QIGL+PEEVI+K+MANPE+A+ FQ+PRVQAAIM+CSQNPMNI K
Sbjct: 349 LKNFDLNSPEVKQQFDQIGLSPEEVISKIMANPEVAMAFQNPRVQAAIMDCSQNPMNITK 408

Query: 373 YQNDKEVMSVITKIAELFPGV 393
           YQNDKEVM V  KI+ELFPGV
Sbjct: 409 YQNDKEVMDVFNKISELFPGV 429

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582251|ref|XP_002531917.1| conserved hypothetical protein [Ricinus communis] gi|223528427|gb|EEF30461.1| conserved hypothetical protein [Ricinus communis]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 247/473 (52%), Positives = 302/473 (63%), Gaps = 90/473 (19%)

Query: 1   MENLNMALVSS--TSPKLVLN--YTN-FKHPTRGITGPRR-----SSSLALPFKLS---- 46
           MENLNM L+SS   SPKLV+   Y N  K+PT  +T  ++     +S+ ALPF L     
Sbjct: 1   MENLNMGLLSSFYASPKLVMGCCYPNSLKNPT--VTTNKQFSRTSTSTRALPFSLRNYKI 58

Query: 47  ---TSRISASVRAGPHQN------GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSN 97
              +SR S S  A  H +       ++GA  FAS++S   QQTSSVGVNP    PP SS+
Sbjct: 59  VTRSSRFSISALAHSHSSPRISGSSRLGAEHFASISSR--QQTSSVGVNPQPLPPPSSSS 116

Query: 98  VGSP-LFWVGVGVGLSALFSFVASRLKQYAMQQALK------------------------ 132
                LFW+GVGVGLSA+FS VA+R+K YAMQQA K                        
Sbjct: 117 QFGSPLFWIGVGVGLSAIFSLVATRVKNYAMQQAFKSMMNQMNTQNDQFNNPAFSPGSAF 176

Query: 133 ------ASGPTT--PYPAAS-----------------------QPRFTMDIPATKVEAAT 161
                 AS P +  P+P +S                       QP  T+D+ ATKVEAA+
Sbjct: 177 PFPTPPASVPASSPPFPTSSTSRPATSPSYPTSSASTSPSVASQPAVTVDVSATKVEAAS 236

Query: 162 ATDVEGKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQ-PPKD 220
            TD       K E E+ +EPKKYAFVDVSPEET  KS F + ED+ ETS+SKD Q  P+ 
Sbjct: 237 VTD------AKDEAEITKEPKKYAFVDVSPEETFPKSPFKSNEDILETSTSKDTQFNPEV 290

Query: 221 SQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFK 280
            QNGAA N  A    G QS +K G  L+V+ LEK+MEDP VQKMVYP LPEEMRNP++FK
Sbjct: 291 LQNGAASNQGAADFTGSQSTRKAGSGLSVEALEKMMEDPTVQKMVYPYLPEEMRNPSTFK 350

Query: 281 LMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITK 340
            MLQNP+YR+QL+EML+ M  +GE+D R++DSLKNFDL+S EVKQQF+QIGLTPEEVI+K
Sbjct: 351 WMLQNPQYRQQLEEMLNNMSGTGEWDNRMMDSLKNFDLSSPEVKQQFDQIGLTPEEVISK 410

Query: 341 MMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGV 393
           +MANPEIA+ FQ+PRVQ AIM+CSQNP++I KYQNDKEVM V  KI+ELFPGV
Sbjct: 411 IMANPEIAMAFQNPRVQQAIMDCSQNPLSIAKYQNDKEVMDVFNKISELFPGV 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|94449066|gb|ABF19057.1| plastid Tic40 [Ricinus communis]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 242/468 (51%), Positives = 297/468 (63%), Gaps = 90/468 (19%)

Query: 6   MALVSS--TSPKLVLN--YTN-FKHPTRGITGPRR-----SSSLALPFKLS-------TS 48
           M L+SS   SPKLV+   Y N  K+PT  +T  ++     +S+ ALPF L        +S
Sbjct: 1   MGLLSSFYASPKLVMGCCYPNSLKNPT--VTTNKQFSRTSTSTRALPFSLRNYKIVTRSS 58

Query: 49  RISASVRAGPHQN------GQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSP- 101
           R S S  A  H +       ++GA  FAS++S   QQTSSVGVNP    PP SS+     
Sbjct: 59  RFSISALAHSHSSPRISGSSRLGAEHFASISSR--QQTSSVGVNPQPLPPPSSSSQFGSP 116

Query: 102 LFWVGVGVGLSALFSFVASRLKQYAMQQALK----------------------------- 132
           LFW+GVGVGLSA+FS VA+R+K YAMQQA K                             
Sbjct: 117 LFWIGVGVGLSAIFSLVATRVKNYAMQQAFKSMMNQMNTQNDQFNNPAFSPGSAFPFPTP 176

Query: 133 -ASGPTT--PYPAAS-----------------------QPRFTMDIPATKVEAATATDVE 166
            AS P +  P+P +S                       QP  T+D+ ATKVEAA+ TD  
Sbjct: 177 PASVPASSPPFPTSSTSRPATSPSYPTSSASTSPSVASQPAVTVDVSATKVEAASVTD-- 234

Query: 167 GKKEVKGETEVKEEPKKYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQ-PPKDSQNGA 225
                K E E+ +EPKKYAFVDVSPEET  KS F + ED+ ETS+SKD Q  P+  QNGA
Sbjct: 235 ----AKDEAEITKEPKKYAFVDVSPEETFPKSPFKSNEDILETSTSKDTQFNPEVLQNGA 290

Query: 226 AFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQN 285
           A N  A    G QS +K G  L+V+ LEK+MEDP VQKMVYP LPEEMRNP++FK MLQN
Sbjct: 291 ASNQGAADFTGSQSTRKAGSGLSVEALEKMMEDPTVQKMVYPYLPEEMRNPSTFKWMLQN 350

Query: 286 PEYRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANP 345
           P+YR+QL+EML+ M  +GE+D R++DSLKNFDL+S EVKQQF+QIGLTPEEVI+K+MANP
Sbjct: 351 PQYRQQLEEMLNNMSGTGEWDNRMMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANP 410

Query: 346 EIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGV 393
           EIA+ FQ+PRVQ AIM+CSQNP++I KYQNDKEVM V  KI+ELFPGV
Sbjct: 411 EIAMAFQNPRVQQAIMDCSQNPLSIAKYQNDKEVMDVFNKISELFPGV 458

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460309|ref|XP_002282574.1| PREDICTED: protein TIC 40, chloroplastic [Vitis vinifera] gi|296089465|emb|CBI39284.3| unnamed protein product [Vitis vinifera]

 Score =  369 bits (948), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 240/442 (54%), Positives = 287/442 (64%), Gaps = 63/442 (14%)

Query: 6   MALVSSTSPKLVLNYTNFKHPTRGITGPRRSSSLALPFK-----LSTSRISASVRAGPHQ 60
           + LVSS  PKLVL ++   +P R I+    S SL L F+     ++ S+  AS R   H 
Sbjct: 4   LTLVSS--PKLVLGHSP-SNP-RHISCAHSSFSLPLLFRKPRKFIAASQSGASPRTPRHV 59

Query: 61  -NGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVA 119
              ++G   FAS  SS  Q TSSVGVNP    PPPSSN+GSPLFW+GVGVGLSALFS+VA
Sbjct: 60  VETKLGTECFAS-ISSSSQGTSSVGVNPQFSPPPPSSNIGSPLFWIGVGVGLSALFSWVA 118

Query: 120 SRLKQYAMQQALKA-------------------------------------SGPTT---- 138
           S LK+YAMQQA K                                      SGPTT    
Sbjct: 119 SNLKKYAMQQAFKTLMGQMDSQNNQFNTTTFSPGSPFPFPMPPPSGPSTSHSGPTTSPSG 178

Query: 139 ----PYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVDVSPEET 194
               P   A+Q   T+D+PATKVE   ATD      VK + E K E  KYAFVDVSPEET
Sbjct: 179 PTTSPSTVAAQSMVTVDVPATKVETPPATD------VKDDIEKKNEQNKYAFVDVSPEET 232

Query: 195 LQKSSFDNFEDVKETSSSKDAQ-PPKDSQNGAAFNYNAGSPFGGQSAKKEGRFLTVDTLE 253
           LQ+S F+NFE+  ETSSSKDAQ     SQNG       G     QS +    FL+VD LE
Sbjct: 233 LQESPFENFEESTETSSSKDAQFSAGVSQNGTPPRPGMGVSEDSQSTRNANPFLSVDALE 292

Query: 254 KLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDGRVLDSL 313
           K+MEDP VQKMVYP LPEEMRNP +FK MLQNP+YR+QLQ+ML+ M    E+D R++D+L
Sbjct: 293 KMMEDPTVQKMVYPYLPEEMRNPTTFKWMLQNPQYRQQLQDMLNNMGGGAEWDNRMMDNL 352

Query: 314 KNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKY 373
           KNFDL+S EVKQQF+QIGLTPEEVI+K+MANP++AL FQ+PR+QAAIM+CSQNP++I KY
Sbjct: 353 KNFDLSSPEVKQQFDQIGLTPEEVISKIMANPDVALAFQNPRIQAAIMDCSQNPLSIAKY 412

Query: 374 QNDKEVMSVITKIAELFPGVTG 395
           QNDKEVM V  KI+ELFPGV+G
Sbjct: 413 QNDKEVMDVFNKISELFPGVSG 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462371|ref|XP_004148914.1| PREDICTED: protein TIC 40, chloroplastic-like [Cucumis sativus]

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 187/328 (57%), Positives = 231/328 (70%), Gaps = 39/328 (11%)

Query: 98  VGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKA------------SGPT----TPYP 141
           VGSPLFWVGVGVGLSALF++VAS LK+YAMQQA K             S PT    +P+P
Sbjct: 99  VGSPLFWVGVGVGLSALFTWVASYLKKYAMQQAFKTMMSQMNSQNSPMSNPTLSSGSPFP 158

Query: 142 -------------AASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKKYAFVD 188
                        + S+P  ++D+ ATKVE    T+V+ + E         E KK+AFVD
Sbjct: 159 IPPTFATGTTISPSVSEPAVSIDVTATKVEEEPVTNVKSRTE-------NMEAKKFAFVD 211

Query: 189 VSPEETLQKSSFDNFEDVKETSSSKDAQPPKD-SQNGAAFNYNAGSPFGGQSAKKEGRFL 247
           VSPEET QKS F   ED  +   SK AQP ++  QNGAA         G Q ++K G  L
Sbjct: 212 VSPEETDQKSPFK--EDATDADVSKSAQPTQELPQNGAASKQAYNGSDGSQFSRKPGSVL 269

Query: 248 TVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDG 307
           +V+ +EK+MEDP VQKM+YP LPEEMRNP +FK M+QNP YR+QL+EML+ M  S ++DG
Sbjct: 270 SVEAVEKMMEDPTVQKMIYPHLPEEMRNPETFKWMMQNPLYRQQLEEMLNNMSGSPQWDG 329

Query: 308 RVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNP 367
           R++DSLKNFDL+S EVKQQF+QIGLTPEEVI+K+MANPEIA+ FQ+PRVQAAIM+CSQNP
Sbjct: 330 RLMDSLKNFDLSSPEVKQQFDQIGLTPEEVISKIMANPEIAMAFQNPRVQAAIMDCSQNP 389

Query: 368 MNIIKYQNDKEVMSVITKIAELFPGVTG 395
           ++I KYQNDKEVM V  KI+ELFPGV+G
Sbjct: 390 LSITKYQNDKEVMDVFNKISELFPGVSG 417

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237382|ref|NP_197165.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] gi|75309208|sp|Q9FMD5.1|TIC40_ARATH RecName: Full=Protein TIC 40, chloroplastic; AltName: Full=Protein PIGMENT DEFECTIVE EMBRYO 120; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 40; Short=AtTIC40; Flags: Precursor gi|16226313|gb|AAL16131.1|AF428299_1 AT5g16620/MTG13_6 [Arabidopsis thaliana] gi|10176971|dbj|BAB10189.1| translocon Tic40-like protein [Arabidopsis thaliana] gi|20260222|gb|AAM13009.1| translocon Tic40-like protein [Arabidopsis thaliana] gi|30387547|gb|AAP31939.1| At5g16620 [Arabidopsis thaliana] gi|332004935|gb|AED92318.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 217/448 (48%), Positives = 281/448 (62%), Gaps = 54/448 (12%)

Query: 1   MENLNMALVSSTSPKLVLNYTNFKHPTRGITG-PRRSSSLALPF-KLSTSRISASVRAGP 58
           MENL +   S++SPKL++   NF    +  TG  RR+ ++ L   K+S S  S S  + P
Sbjct: 1   MENLTLVSCSASSPKLLIG-CNFTSSLKNPTGFSRRTPNIVLRCSKISASAQSQSPSSRP 59

Query: 59  HQNGQV-----GAGGFASL-TSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
              G++      +  FAS+ +SS  QQT+SV        PP SS +GSPLFW+GVGVGLS
Sbjct: 60  ENTGEIVVVKQRSKAFASIFSSSRDQQTTSVASPSVPVPPPSSSTIGSPLFWIGVGVGLS 119

Query: 113 ALFSFVASRLKQYAMQQALKA---------------------------SGPTTPYPAASQ 145
           ALFS+V S LK+YAMQ A+K                               T+P  +  Q
Sbjct: 120 ALFSYVTSNLKKYAMQTAMKTMMNQMNTQNSQFNNSGFPSGSPFPFPFPPQTSPASSPFQ 179

Query: 146 PRF-----TMDIPATKVEAAT--------ATDVEGKK--EVKGETEVKEEPKKYAFVDVS 190
            +      T+D+ ATKVE           A D+E  K   V   ++ K+E K YAF D+S
Sbjct: 180 SQSQSSGATVDVTATKVETPPSTKPKPTPAKDIEVDKPSVVLEASKEKKEEKNYAFEDIS 239

Query: 191 PEETLQKSSFDNFEDVKETSSSKDAQPPKDS-QNGA--AFNYNAGSPFGGQSAKKEGRFL 247
           PEET ++S F N+ +V ET+S K+ +  +D  QNGA  A    A   F      K G  L
Sbjct: 240 PEETTKESPFSNYAEVSETNSPKETRLFEDVLQNGAGPANGATASEVFQSLGGGKGGPGL 299

Query: 248 TVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESGEFDG 307
           +V+ LEK+MEDP VQKMVYP LPEEMRNP +FK ML+NP+YR+QLQ+ML+ M  SGE+D 
Sbjct: 300 SVEALEKMMEDPTVQKMVYPYLPEEMRNPETFKWMLKNPQYRQQLQDMLNNMSGSGEWDK 359

Query: 308 RVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNP 367
           R+ D+LKNFDLNS EVKQQF QIGLTPEEVI+K+M NP++A+ FQ+PRVQAA+MECS+NP
Sbjct: 360 RMTDTLKNFDLNSPEVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQAALMECSENP 419

Query: 368 MNIIKYQNDKEVMSVITKIAELFPGVTG 395
           MNI+KYQNDKEVM V  KI++LFPG+TG
Sbjct: 420 MNIMKYQNDKEVMDVFNKISQLFPGMTG 447

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
TAIR|locus:2174155	447	TIC40 "translocon at the inner	0.664	0.590	0.528	9.1e-88
UNIPROTKB|Q5ZLF0	361	ST13 "Hsc70-interacting protei	0.133	0.146	0.415	2.6e-05
RGD|621312	368	St13 "suppression of tumorigen	0.138	0.149	0.363	0.00017
UNIPROTKB|A7E3S8	369	ST13 "Uncharacterized protein"	0.138	0.149	0.345	0.0006
UNIPROTKB|P50502	369	ST13 "Hsc70-interacting protei	0.138	0.149	0.345	0.0006
MGI|MGI:1917606	371	St13 "suppression of tumorigen	0.138	0.148	0.345	0.00061

TAIR|locus:2174155 TIC40 "translocon at the inner envelope membrane of chloroplasts 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 9.1e-88, Sum P(2) = 9.1e-88
 Identities = 147/278 (52%), Positives = 189/278 (67%)

Query:   132 KASGPTTPYPAASQPR-FTMDIPATKVEAATAT----------DXXXXXXXXXXXXXXXX 180
             + S  ++P+ + SQ    T+D+ ATKVE   +T          +                
Sbjct:   170 QTSPASSPFQSQSQSSGATVDVTATKVETPPSTKPKPTPAKDIEVDKPSVVLEASKEKKE 229

Query:   181 XXXYAFVDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDS-QNGA--AFNYNAGSPFGG 237
                YAF D+SPEET ++S F N+ +V ET+S K+ +  +D  QNGA  A    A   F  
Sbjct:   230 EKNYAFEDISPEETTKESPFSNYAEVSETNSPKETRLFEDVLQNGAGPANGATASEVFQS 289

Query:   238 QSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLD 297
                 K G  L+V+ LEK+MEDP VQKMVYP LPEEMRNP +FK ML+NP+YR+QLQ+ML+
Sbjct:   290 LGGGKGGPGLSVEALEKMMEDPTVQKMVYPYLPEEMRNPETFKWMLKNPQYRQQLQDMLN 349

Query:   298 GMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQ 357
              M  SGE+D R+ D+LKNFDLNS EVKQQF QIGLTPEEVI+K+M NP++A+ FQ+PRVQ
Sbjct:   350 NMSGSGEWDKRMTDTLKNFDLNSPEVKQQFNQIGLTPEEVISKIMENPDVAMAFQNPRVQ 409

Query:   358 AAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTG 395
             AA+MECS+NPMNI+KYQNDKEVM V  KI++LFPG+TG
Sbjct:   410 AALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGMTG 447

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=RCA;IMP

GO:0031897 "Tic complex" evidence=TAS

GO:0045037 "protein import into chloroplast stroma" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

UNIPROTKB|Q5ZLF0 ST13 "Hsc70-interacting protein" [Gallus gallus (taxid:9031)]

 Score = 127 (49.8 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 22/53 (41%), Positives = 37/53 (69%)

Query:   338 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELF 390
             + +++++PE+    Q P V AA  + +QNP N+ KYQN+ +VMS+ITK++  F
Sbjct:   305 LNEILSDPEVLAAMQDPEVMAAFQDVAQNPANMSKYQNNPKVMSLITKLSAKF 357

GO:0005737 "cytoplasm" evidence=IEA

RGD|621312 St13 "suppression of tumorigenicity 13" [Rattus norvegicus (taxid:10116)]

 Score = 120 (47.3 bits), Expect = 0.00017, P = 0.00017
 Identities = 20/55 (36%), Positives = 37/55 (67%)

Query:   338 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 392
             + +++++PE+    Q P V  A  + +QNP N+ KYQN+ +VM++I+K++  F G
Sbjct:   312 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQNNPKVMNLISKLSAKFGG 366

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IDA;IPI

GO:0030544 "Hsp70 protein binding" evidence=IDA;IPI

GO:0032403 "protein complex binding" evidence=IDA

GO:0032564 "dATP binding" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IDA

GO:0051087 "chaperone binding" evidence=IPI

GO:0051260 "protein homooligomerization" evidence=IDA

GO:0061084 "negative regulation of protein refolding" evidence=IDA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IDA

UNIPROTKB|A7E3S8 ST13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 115 (45.5 bits), Expect = 0.00060, P = 0.00060
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query:   338 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 392
             + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct:   313 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367

GO:0006950 "response to stress" evidence=IEA

UNIPROTKB|P50502 ST13 "Hsc70-interacting protein" [Homo sapiens (taxid:9606)]

 Score = 115 (45.5 bits), Expect = 0.00060, P = 0.00060
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query:   338 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 392
             + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct:   313 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGG 367

GO:0005829 "cytosol" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032564 "dATP binding" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0061084 "negative regulation of protein refolding" evidence=IEA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0030674 "protein binding, bridging" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1917606 St13 "suppression of tumorigenicity 13" [Mus musculus (taxid:10090)]

 Score = 115 (45.5 bits), Expect = 0.00061, P = 0.00061
 Identities = 19/55 (34%), Positives = 37/55 (67%)

Query:   338 ITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPG 392
             + +++++PE+    Q P V  A  + +QNP N+ KYQ++ +VM++I+K++  F G
Sbjct:   315 LNEILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQSNPKVMNLISKLSAKFGG 369


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.129   0.361    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      397       353   0.00079  117 3  11 23  0.45    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  195 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  32.42u 0.17s 32.59t   Elapsed:  00:00:02
  Total cpu time:  32.43u 0.17s 32.60t   Elapsed:  00:00:02
  Start:  Fri May 10 03:19:35 2013   End:  Fri May 10 03:19:37 2013

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006457 "protein folding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0032564 "dATP binding" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0051082 "unfolded protein binding" evidence=ISO

GO:0051087 "chaperone binding" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

GO:0061084 "negative regulation of protein refolding" evidence=ISO

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FMD5	TIC40_ARATH	No assigned EC number	0.4843	0.9924	0.8814	yes	no
Q8GT66	TIC40_PEA	No assigned EC number	0.5391	0.9622	0.8761	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	397
pfam13658	96	pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolas	2e-11

>gnl|CDD|222294 pfam13658, UCH37_bd, Ubiquitin C-terminal hydrolase 37 receptor binding site

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 11/98 (11%)

Query: 247 LTVDTLEKLMED-PQVQKMVYPSLPEE--MRNPASFKLMLQNPEYRKQLQEMLDGMCESG 303
           LT + LE L+E  PQVQ+ + P LPE   MRNP   + ML++P++++ L  +   +  SG
Sbjct: 7   LTPENLEPLLESPPQVQERLLPHLPEGDLMRNPEDLREMLRSPQFKQALASLSQAL-RSG 65

Query: 304 EFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKM 341
                    L    LN  EV   F   G   E  +  +
Sbjct: 66  GLP----SLLSQLGLNPEEV---FAANGGDVEAFLEAL 96

This domain appears frequently at the C-terminus of Proteasom_Rpn13, pfam04683. It is a proteasome subunit that binds the de-ubiquitinating enzyme, UCH37. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	397
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	100.0
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.69
smart00727	41	STI1 Heat shock chaperonin-binding motif.	98.54
smart00727	41	STI1 Heat shock chaperonin-binding motif.	97.09
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	95.21
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	94.69
KOG3037	330	consensus Cell membrane glycoprotein [General func	91.76
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	91.31
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	81.63

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-40  Score=323.05  Aligned_cols=315  Identities=27%  Similarity=0.285  Sum_probs=243.2

Q ss_pred             CCCcccccceeeecCCCccccccccCCCCCCCCCCCCCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-------
Q 016002           61 NGQVGAGGFASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLSALFSFVASRLKQYAMQQALKA-------  133 (397)
Q Consensus        61 ~~~~~~~~fas~ss~~~~~~~s~~~~~~~~~pp~~s~igspl~wigvgvglsa~fs~~a~~~k~yamqqa~ks-------  133 (397)
                      ..+-+++.|++|+++..-   ++-..-.++++|-...++++|||++++|+++++||.+-...++|++++=.|.       
T Consensus        50 ~~~e~~k~e~~~~~~~ee---~~~~~e~s~~~~~~~~d~egviepd~d~pq~MGds~~e~Tee~~eqa~e~k~~A~eAln  126 (377)
T KOG1308|consen   50 KSEENTKAEASISKSVEE---SLKAPEVSSPESDLEIDGEGVIEPDTDAPQEMGDSNAEITEEMMDQANDKKVQASEALN  126 (377)
T ss_pred             cccccccccCCccccccc---ccccCCCCCCCcchhccCCCccccCCCcchhhchhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence            366789999999887443   7777777775555568999999999999999999999999999999987776       


Q ss_pred             cCCCCCCCCCCCCCccccCCCccccccccccccCcccccCcccccc---CCcccceeeCChhhhhhhccccccccccccC
Q 016002          134 SGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKKEVKGETEVKE---EPKKYAFVDVSPEETLQKSSFDNFEDVKETS  210 (397)
Q Consensus       134 ~~p~~~~~~~~~~~~tvd~~at~v~a~~~~~v~~~~~~~~~~e~~~---e~kk~af~dvs~ee~~~~~~~~~~~~~~~~~  210 (397)
                      .|=..-.--.-..+++...+...-.+--++.         ..+.++   +-+.++|-+..++++-+..+|........+.
T Consensus       127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv---------~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~  197 (377)
T KOG1308|consen  127 DGEFDTAIELFTSAIELNPPLAILYAKRASV---------FLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN  197 (377)
T ss_pred             CcchhhhhcccccccccCCchhhhcccccce---------eeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence            2211111001112222222222222222222         233343   4478999999999999999998777776666


Q ss_pred             CCCCCCCC-CCCCCCCCCCCCCCCCCCCCC--ccccCccccHHHHHHhhcCHHHHHhhcCCCccccCCHHHHHHHhhChH
Q 016002          211 SSKDAQPP-KDSQNGAAFNYNAGSPFGGQS--AKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPE  287 (397)
Q Consensus       211 ~~k~~~~~-~~~~~g~~~~~~~~~~~~~~~--~~~~g~~~~~~~l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~MlqNPq  287 (397)
                      ..+.+... .+.+++..-..++-...--+.  ..+.+.-......++++.++.+++++|+|+|++|+|+++++||++|++
T Consensus       198 ~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~~~r~er~r~~r~~~e~~~~e~~k~~~~~~~  277 (377)
T KOG1308|consen  198 WEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREEREIKERVERVRYAREPEEMANPEEFKRMLKNPQ  277 (377)
T ss_pred             hHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHHhcccccccccccccchhhhcChhhhhhhhccCC
Confidence            66544433 344444333322222211111  233456678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCCCchhhhhhhccCCCChHHHHHHHHhcCCChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhCh
Q 016002          288 YRKQLQEMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNP  367 (397)
Q Consensus       288 yrqQL~~Ml~~mgg~g~~~~~m~d~L~~~D~NnpEv~eqf~q~G~tpEE~mskiMaDPEI~aamQDPeV~aALqDIssNP  367 (397)
                      ||+++.+|.+.|+|+..|+-+|.+.|++.+.|.+ +.+++.+.|      +.+||.||||+++||||+|+++|+||++||
T Consensus       278 ~~~~~g~~p~~M~g~~~~~~~m~~~m~~~~~n~~-~~~~p~~~g------i~ki~~dpev~aAfqdp~v~aal~d~~~np  350 (377)
T KOG1308|consen  278 YRQFLGGFPGGMPGSFPGDKRMTDGMKGFDGNSP-VKQQPNQIG------ISKILSDPEVAAAFQDPEVQAALMDVSQNP  350 (377)
T ss_pred             CCcccCCCcccCCCCCCCccccccccccCCCCCc-cccCCCccc------HhhhcCchHHHHhhcChHHHhhhhhcccCh
Confidence            9999999999999999899999999999999999 877777777      899999999999999999999999999999


Q ss_pred             HHHHHhhcCHHHHHHHHHHHHhCCCCC
Q 016002          368 MNIIKYQNDKEVMSVITKIAELFPGVT  394 (397)
Q Consensus       368 aAI~KYqsDPKVm~~IqKL~akFgG~~  394 (397)
                      +|++||++||+||++|.||+.+|+|++
T Consensus       351 ~n~~kyq~n~kv~~~i~kl~~kf~g~~  377 (377)
T KOG1308|consen  351 ANMMKYQNNPKVMDVISKLSQKFPGMT  377 (377)
T ss_pred             HHHHHhccChHHHHHHHHHHhhcCCCC
Confidence            999999999999999999999999874

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=4e-08  Score=102.21  Aligned_cols=75  Identities=25%  Similarity=0.377  Sum_probs=68.4

Q ss_pred             ccCCCChHHHHHHH-----H-hcCCChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHH
Q 016002          314 KNFDLNSAEVKQQF-----E-QIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIA  387 (397)
Q Consensus       314 ~~~D~NnpEv~eqf-----~-q~G~tpEE~mskiMaDPEI~aamQDPeV~aALqDIssNPaAI~KYqsDPKVm~~IqKL~  387 (397)
                      ..+|+++.|+.+++     + +...+++++.++.|.||||++||+||.++.+|.++++|| +.++|+.||.|+.+|+||+
T Consensus       453 le~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~~dpev~~il~d~~m~~~l~q~q~~p-a~~~~~~n~~v~~ki~~l~  531 (539)
T KOG0548|consen  453 LELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAMADPEVQAILQDPAMRQILEQMQENP-ALQEHLKNPMVMQKIEKLI  531 (539)
T ss_pred             HhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhccCHHHHHHHcCHHHHHHHHHHHhCH-HHHHHHhccHHHHHHHHHH
Confidence            35679999998888     2 457899999999999999999999999999999999999 8899999999999999998


Q ss_pred             Hh
Q 016002          388 EL  389 (397)
Q Consensus       388 ak  389 (397)
                      +.
T Consensus       532 ~~  533 (539)
T KOG0548|consen  532 SA  533 (539)
T ss_pred             Hh
Confidence            63

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=98.54  E-value=1e-07  Score=66.93  Aligned_cols=40  Identities=30%  Similarity=0.592  Sum_probs=38.1

Q ss_pred             CHHHHhhcCCHHHHHHHHHHhhChHHHHHhhc-CHHHHHHH
Q 016002          344 NPEIALGFQSPRVQAAIMECSQNPMNIIKYQN-DKEVMSVI  383 (397)
Q Consensus       344 DPEI~aamQDPeV~aALqDIssNPaAI~KYqs-DPKVm~~I  383 (397)
                      |||++++++||.|+.+++++++||..+.+|+. ||+++++|
T Consensus         1 dP~~~~~l~~P~~~~~l~~~~~nP~~~~~~~~~nP~~~~~i   41 (41)
T smart00727        1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQENPQLLQLI   41 (41)
T ss_pred             CHHHHHHHcCHHHHHHHHHHHHCHHHHHHHHHhCHHhHhhC
Confidence            89999999999999999999999999999999 99998764

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=97.09  E-value=0.00044  Score=48.50  Aligned_cols=38  Identities=29%  Similarity=0.497  Sum_probs=31.6

Q ss_pred             HHHHhhcCHHHHHhhcCCCccccCCHHHHHHHhh-ChHHHHHH
Q 016002          251 TLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQ-NPEYRKQL  292 (397)
Q Consensus       251 ~l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~Mlq-NPqyrqQL  292 (397)
                      .+..+|+||.+++++--    .++||+.+..|++ ||++++++
T Consensus         3 ~~~~~l~~P~~~~~l~~----~~~nP~~~~~~~~~nP~~~~~i   41 (41)
T smart00727        3 EMALRLQNPQVQSLLQD----MQQNPDMLAQMLQENPQLLQLI   41 (41)
T ss_pred             HHHHHHcCHHHHHHHHH----HHHCHHHHHHHHHhCHHhHhhC
Confidence            45678889999987764    8889999999999 99997653

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=95.21  E-value=0.047  Score=57.58  Aligned_cols=35  Identities=31%  Similarity=0.670  Sum_probs=21.6

Q ss_pred             cHHHHHHhhcCHHHHHhhcCCCccccCCHHHHH-HHhhChHHHH
Q 016002          248 TVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFK-LMLQNPEYRK  290 (397)
Q Consensus       248 ~~~~l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk-~MlqNPqyrq  290 (397)
                      +-+.+..||+||-+|.        .|+|||.+. .++.||+|.+
T Consensus       155 npe~~~~~m~nP~vq~--------ll~Npd~mrq~I~anPqmq~  190 (493)
T KOG0010|consen  155 NPEALRQMMENPIVQS--------LLNNPDLMRQLIMANPQMQD  190 (493)
T ss_pred             CHHHHHHhhhChHHHH--------HhcChHHHHHHHhcCHHHHH
Confidence            3456677777777774        345666665 4566666633

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=94.69  E-value=0.057  Score=56.98  Aligned_cols=93  Identities=24%  Similarity=0.325  Sum_probs=58.6

Q ss_pred             CCCCCCCCCCCCCCCCCccccCccccHHHHHHhhcCHH-HHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhccC
Q 016002          223 NGAAFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQ-VQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCE  301 (397)
Q Consensus       223 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~Mm~nPq-mQkM~ypyLPe~MRNP~tfk~MlqNPqyrqQL~~Ml~~mgg  301 (397)
                      ++.++..|.+++.+.......++-..-..++.+..||+ +|+|+.||.+      .+|.-|.+||.+..+          
T Consensus       308 ~~~~~t~G~~s~~~~~n~s~~~~~~~~a~lq~i~~n~~~~~~l~s~~~~------~m~~~~s~~P~~a~~----------  371 (493)
T KOG0010|consen  308 NPTPGTSGGTSSNGNSNPSQLGSPGMQAGLQMITENPSLLQQLLSPYIR------SMFQSASQNPLQAAQ----------  371 (493)
T ss_pred             CCCcCccCccccCCCCCccccCCcchhhhhhccccChhhhhhccchhhH------HHHhhhccCchhhhc----------
Confidence            34444444333332222223344455567888888883 4455555544      556667788877444          


Q ss_pred             CCCCchhhhhhhccCCCChHHHHHHHHhcCCChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChH
Q 016002          302 SGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPM  368 (397)
Q Consensus       302 ~g~~~~~m~d~L~~~D~NnpEv~eqf~q~G~tpEE~mskiMaDPEI~aamQDPeV~aALqDIssNPa  368 (397)
                                                          +.. |.||+++.+|.+|+++++|+.|++.-.
T Consensus       372 ------------------------------------~~~-mq~p~~~~~~~np~a~~ai~qiqq~~~  401 (493)
T KOG0010|consen  372 ------------------------------------LRQ-MQNPDVLRAMSNPRAMQAIRQIQQGLQ  401 (493)
T ss_pred             ------------------------------------ccc-ccCchHhhhhcChHHHHHHHHHHHHHH
Confidence                                                013 779999999999999999999987544

>KOG3037 consensus Cell membrane glycoprotein [General function prediction only]

Probab=91.76  E-value=0.37  Score=48.89  Aligned_cols=55  Identities=20%  Similarity=0.495  Sum_probs=49.2

Q ss_pred             ccccHHHHHHhhcCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhc
Q 016002          245 RFLTVDTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGM  299 (397)
Q Consensus       245 ~~~~~~~l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~MlqNPqyrqQL~~Ml~~m  299 (397)
                      ..+.-+.+..++.||-+|+=++||||+---+.+-+.-++++|||+|+|.-+....
T Consensus       227 ~vL~~e~v~~vl~~~~v~erL~phlP~d~~~~~~i~e~l~spqF~qal~sfs~aL  281 (330)
T KOG3037|consen  227 TVLKPEAVAPVLANPGVQERLMPHLPSDHDRAEGILELLTSPQFRQALDSFSQAL  281 (330)
T ss_pred             hhcChHHHHHHhhCcchhhhhcccCCCCCcchHHHHHhhcCHHHHHHHHHHHHHH
Confidence            3466899999999999999999999998888888889999999999998877665

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=91.31  E-value=0.48  Score=50.73  Aligned_cols=74  Identities=18%  Similarity=0.208  Sum_probs=60.3

Q ss_pred             cCCCChHHHHHHHHhcC---------CChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHH
Q 016002          315 NFDLNSAEVKQQFEQIG---------LTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITK  385 (397)
Q Consensus       315 ~~D~NnpEv~eqf~q~G---------~tpEE~mskiMaDPEI~aamQDPeV~aALqDIssNPaAI~KYqsDPKVm~~IqK  385 (397)
                      .+|++|..+..++.+.-         .+.-.+++++-+||.....+.||.+..+|+.++.||.++.-|++||-+|..+--
T Consensus        98 ~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~  177 (539)
T KOG0548|consen   98 EKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQ  177 (539)
T ss_pred             hcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHH
Confidence            45677887777763211         122357888999999999999999999999999999999999999999988877


Q ss_pred             HHH
Q 016002          386 IAE  388 (397)
Q Consensus       386 L~a  388 (397)
                      |..
T Consensus       178 l~~  180 (539)
T KOG0548|consen  178 LKG  180 (539)
T ss_pred             Hhc
Confidence            754

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=81.63  E-value=11  Score=38.90  Aligned_cols=41  Identities=37%  Similarity=0.499  Sum_probs=31.3

Q ss_pred             HHHHHhhcCHHHHHhhcCCCccccCCHHHHHHHhh-----ChHHHHHHHH
Q 016002          250 DTLEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQ-----NPEYRKQLQE  294 (397)
Q Consensus       250 ~~l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~Mlq-----NPqyrqQL~~  294 (397)
                      +.|+-++++||||+|..=    -=+||+.++-|||     ||+..|+|++
T Consensus       214 ~~l~fLr~~~qf~~lR~~----iqqNP~ll~~~Lqqlg~~nP~L~q~Iq~  259 (340)
T KOG0011|consen  214 DPLEFLRNQPQFQQLRQM----IQQNPELLHPLLQQLGKQNPQLLQLIQE  259 (340)
T ss_pred             CchhhhhccHHHHHHHHH----HhhCHHHHHHHHHHHhhhCHHHHHHHHH
Confidence            668888999999966411    0159999999985     8999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	397
2lnm_A	62	Solution Structure Of The C-Terminal Np-Repeat Doma		5e-23

>pdb|2LNM|A Chain A, Solution Structure Of The C-Terminal Np-Repeat Domain Of Tic40, A Co- Chaperone During Protein Import Into Chloroplasts Length = 62

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 57/62 (91%)
Query: 334 PEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGV 393
           PEEVI+K+M NP++A+ FQ+PRVQAA+MECS+NPMNI+KYQNDKEVM V  KI++LFPG+
Sbjct: 1   PEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGM 60
Query: 394 TG 395
           TG
Sbjct: 61  TG 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	397
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 60.6 bits (147), Expect = 3e-12
 Identities = 18/63 (28%), Positives = 30/63 (47%)

Query: 326 QFEQIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITK 385
           Q      TPEE   + M +PE+A   Q P +Q+ + +  QNP  + ++  + EV   I  
Sbjct: 1   QPGTSNETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQT 60

Query: 386 IAE 388
           +  
Sbjct: 61  LIA 63

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 2e-11
 Identities = 52/359 (14%), Positives = 107/359 (29%), Gaps = 128/359 (35%)

Query: 145 QPRFTMDIPATKVEAATATDVEGKKEVKGETEVKEEPKK----YAFVDV---SPEETLQK 197
           +  F  +     V+    + +  K+E+     +                     EE +QK
Sbjct: 26  EDAFVDNFDCKDVQDMPKS-ILSKEEID---HIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 198 SSF------DNFEDVKETSSSKDAQPPKDSQNGAAFN------YNAGSPF---------- 235
             F       N++ +     ++  QP   S     +       YN    F          
Sbjct: 82  --FVEEVLRINYKFLMSPIKTEQRQP---SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 236 ----------------------GG-----------QSAKKEGRF------LTV---DTLE 253
                                  G            S K + +       L +   ++ E
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 254 KLMEDPQVQKMVY------PSLPEEMRNP--------ASFKLMLQNPEYRKQLQEMLDGM 299
            ++E   +QK++Y       S  +   N         A  + +L++  Y   L  +L  +
Sbjct: 197 TVLE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNV 253

Query: 300 CESGE---FDG--RVL---------DSLKNFDLNSAEVKQQFEQIGLTPEEVITKMMAN- 344
             +     F+   ++L         D L      +  +      + LTP+EV + ++   
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSA--ATTTHISLDHHSMTLTPDEVKS-LLLKY 310

Query: 345 --------PEIALGFQSPRVQAAIMECSQNPMNII---KYQNDKEVMSVI-TKIAELFP 391
                   P   L   +PR  + I E  ++ +      K+ N  ++ ++I + +  L P
Sbjct: 311 LDCRPQDLPREVLTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 4e-10
 Identities = 60/375 (16%), Positives = 109/375 (29%), Gaps = 110/375 (29%)

Query: 16  LVLNY----TNFKHPTRGITGPRRSSSLAL--------PF-KLSTSRIS--ASVRAG--- 57
           L +NY    +  K   R  +   R               F K + SR+     +R     
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 58  --PHQNGQV-GAGGF--ASLTSSGGQQTSSVGVNPNLPMPPPSSNVGSPLFWVGVGVGLS 112
             P +N  + G  G     +                             +FW+ +    S
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF------------KIFWLNLKNCNS 194

Query: 113 ALFSFVASRLKQYAMQQAL--KASGPTTPYPAASQPRFTMDIPATKVEAATATDVEGKKE 170
                  + L+   M Q L  +     T     S+   + +I               + E
Sbjct: 195 P-----ETVLE---MLQKLLYQIDPNWT-----SRSDHSSNIKLRIHSI--------QAE 233

Query: 171 VKGETEVKEEPKKYAFV---DVSPEETLQKSSFDNFEDVKE--TSSSKDAQPPKDSQNGA 225
           ++    +K +P +   +   +V   +     +F+     K   T+        +  Q   
Sbjct: 234 LR--RLLKSKPYENCLLVLLNVQNAKAWN--AFNL--SCKILLTT--------RFKQVTD 279

Query: 226 AFNYNAGSPFGGQSAKKEGRFLTVDTLEKLMEDPQVQKMVYPSLPEEMR--NP------- 276
             +    +     S       LT D ++ L+   +        LP E+   NP       
Sbjct: 280 FLSAATTTHI---SLDHHSMTLTPDEVKSLLL--KYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 277 ASFKLMLQNPEYRKQLQ-EMLDGMCESGEFDGRVLDSLKNFDLNSAEVKQQFEQIGLTPE 335
            S +  L   +  K +  + L  + ES         SL    L  AE ++ F+++ + P 
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIES---------SLNV--LEPAEYRKMFDRLSVFPP 383

Query: 336 EV-ITKMMANPEIAL 349
              I      P I L
Sbjct: 384 SAHI------PTILL 392

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 7e-07
 Identities = 38/287 (13%), Positives = 89/287 (31%), Gaps = 72/287 (25%)

Query: 93  PPSSNVGSPLFWVGVGVGLSALFSFVASRLKQY------AMQQALKASGPTTPYPAASQP 146
           P      +P     + + ++       +    +       +   +++S      PA  + 
Sbjct: 319 PREVLTTNPRR---LSI-IAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRK 373

Query: 147 RFTM--------DIPATKV-----EAATATDVEG-KKEVKGETEVKEEPKKYAF------ 186
            F           IP T +          +DV     ++   + V+++PK+         
Sbjct: 374 MFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 187 ----VDVSPEETLQKSSFDNFEDVKETSSSKDAQPPKDSQNGAAFNYNAGSPFG--GQSA 240
               V +  E  L +S  D++   K   S     P  D      +++      G   ++ 
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD---QYFYSH-----IGHHLKNI 484

Query: 241 KKEGRFLTVDTLEKL------MEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQE 294
           +   R         +      +E    QK+ + S             + Q   Y+     
Sbjct: 485 EHPERM---TLFRMVFLDFRFLE----QKIRHDSTAWNASGS-ILNTLQQLKFYKPY--- 533

Query: 295 MLDGMCESGEFDGRVLDSLKNFDLNSAE--VKQQFE---QIGLTPEE 336
               +C++     R+++++ +F     E  +  ++    +I L  E+
Sbjct: 534 ----ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	397
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	99.81
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	99.75
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	99.3
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	97.24
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	96.57
2kqz_A	155	Proteasomal ubiquitin receptor ADRM1; proteasome,	95.4
2kr0_A	411	Proteasomal ubiquitin receptor ADRM1; proteasome,	93.99
2qsf_X	171	RAD23, UV excision repair protein RAD23; alpha-bet	93.12
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	85.94

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=99.81  E-value=5.8e-20  Score=139.41  Aligned_cols=62  Identities=73%  Similarity=1.238  Sum_probs=60.1

Q ss_pred             hHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHHhCCCCCC
Q 016002          334 PEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAELFPGVTG  395 (397)
Q Consensus       334 pEE~mskiMaDPEI~aamQDPeV~aALqDIssNPaAI~KYqsDPKVm~~IqKL~akFgG~~~  395 (397)
                      ||+.++++++|||++++|+||+|+++|+||++||+++++|++||+|+.+|+||.++|||++|
T Consensus         1 ~~e~~~kl~~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~~dP~v~~~~~~L~~~~~g~~~   62 (62)
T 2lnm_A            1 PEEVISKIMENPDVAMAFQNPRVQAALMECSENPMNIMKYQNDKEVMDVFNKISQLFPGMTG   62 (62)
T ss_dssp             CHHHHHHHTTSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHTTCHHHHHHHHHHHHHSSSCCC
T ss_pred             CHHHHHHHHcChHHHHHcCCHHHHHHHHHHHHCHHHHHHHHhChHHHHHHHHHHHHhCCCCC
Confidence            57899999999999999999999999999999999999999999999999999999999876

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.4e-18  Score=136.58  Aligned_cols=60  Identities=28%  Similarity=0.436  Sum_probs=57.9

Q ss_pred             hcCCChHHHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHHhhcCHHHHHHHHHHHH
Q 016002          329 QIGLTPEEVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIKYQNDKEVMSVITKIAE  388 (397)
Q Consensus       329 q~G~tpEE~mskiMaDPEI~aamQDPeV~aALqDIssNPaAI~KYqsDPKVm~~IqKL~a  388 (397)
                      ..|++++|++.++|+||||+++|+||+|+++|+||++||++++||++||+|+++|+||++
T Consensus         4 ~~~e~~ee~~~~~m~dPEi~~im~DP~~~~~lq~~~~NP~~~~k~~~nP~v~~~i~kl~~   63 (71)
T 2llw_A            4 TSNETPEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIA   63 (71)
T ss_dssp             TCCSCHHHHHHHHHHSHHHHHHHTCTHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHhcCHHHHHHhCCHHHHHHHHHHHHCHHHHHHHHhCHHHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999999999999999976

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=99.30  E-value=4.4e-13  Score=104.28  Aligned_cols=53  Identities=21%  Similarity=0.414  Sum_probs=50.1

Q ss_pred             HHHHHhcCCHHHHhhcCCHHHHHHHHHHhhChHHHHH-hhcCHHHHHHHHHHHH
Q 016002          336 EVITKMMANPEIALGFQSPRVQAAIMECSQNPMNIIK-YQNDKEVMSVITKIAE  388 (397)
Q Consensus       336 E~mskiMaDPEI~aamQDPeV~aALqDIssNPaAI~K-YqsDPKVm~~IqKL~a  388 (397)
                      +.++++++|||++++|+||+|+++|+||++||++|++ |++||+|+++|.||..
T Consensus        14 ~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~~dPrv~~~l~~L~g   67 (71)
T 2llv_A           14 NLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATLMG   67 (71)
T ss_dssp             SCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHhhCcHHHHHHHHHHc
Confidence            3578999999999999999999999999999999999 9999999999999964

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=97.24  E-value=0.00035  Score=52.73  Aligned_cols=48  Identities=13%  Similarity=0.150  Sum_probs=40.9

Q ss_pred             HHHhhcCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHhccCCC
Q 016002          252 LEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDGMCESG  303 (397)
Q Consensus       252 l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~MlqNPqyrqQL~~Ml~~mgg~g  303 (397)
                      +..+|+||+|++++.-    .++||..+..+|+||.+++.++.+++-+||-+
T Consensus        14 ~~~~m~dP~~~~~lq~----i~~NP~~~~~~~~dP~v~~~~~~L~~~~~g~~   61 (62)
T 2lnm_A           14 VAMAFQNPRVQAALME----CSENPMNIMKYQNDKEVMDVFNKISQLFPGMT   61 (62)
T ss_dssp             HHHHTTSHHHHHHHHH----HTTCGGGHHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHcCCHHHHHHHHH----HHHCHHHHHHHHhChHHHHHHHHHHHHhCCCC
Confidence            4566777777776665    88999999999999999999999999999854

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=96.57  E-value=0.0017  Score=50.92  Aligned_cols=43  Identities=28%  Similarity=0.570  Sum_probs=34.0

Q ss_pred             HHHhhcCHHHHHhhcCCCccccCCHHHHHHHhhChHHHHHHHHHHHh
Q 016002          252 LEKLMEDPQVQKMVYPSLPEEMRNPASFKLMLQNPEYRKQLQEMLDG  298 (397)
Q Consensus       252 l~~Mm~nPqmQkM~ypyLPe~MRNP~tfk~MlqNPqyrqQL~~Ml~~  298 (397)
                      |..+|+||+|++++.-    .|+||..+..+|+||.+++.|+.+.+.
T Consensus        22 i~~im~DP~~~~~lq~----~~~NP~~~~k~~~nP~v~~~i~kl~~a   64 (71)
T 2llw_A           22 VAAIMQDPVMQSILQQ----AQQNPAALQEHMKNPEVFKKIQTLIAA   64 (71)
T ss_dssp             HHHHHTCTHHHHHHHH----HHHCHHHHHHHHHSHHHHHHHHHHHHT
T ss_pred             HHHHhCCHHHHHHHHH----HHHCHHHHHHHHhCHHHHHHHHHHHHc
Confidence            4456667777766665    788999999999999999999988764

>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A

Probab=95.40  E-value=0.0042  Score=54.88  Aligned_cols=52  Identities=19%  Similarity=0.398  Sum_probs=44.9

Q ss_pred             cccHHHHHHhhcCHHHHHhhcCCCccccC---CHHHHHHHhhChHHHHHHHHHHH
Q 016002          246 FLTVDTLEKLMEDPQVQKMVYPSLPEEMR---NPASFKLMLQNPEYRKQLQEMLD  297 (397)
Q Consensus       246 ~~~~~~l~~Mm~nPqmQkM~ypyLPe~MR---NP~tfk~MlqNPqyrqQL~~Ml~  297 (397)
                      .++.+.|..+++||++++-+++|||+.-+   +++-++..++.|||+|.|.-+=.
T Consensus        39 vLt~e~l~~ll~d~~~~~~L~~~LP~~~~~~~~~e~L~~~l~SPQF~Qal~~fs~   93 (155)
T 2kqz_A           39 VLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSA   93 (155)
T ss_dssp             HTCTTTSHHHHHSHHHHHHHHHHSCSSCCCCSSHHHHHSSCCSHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHcCHHHHHHHHhhCCCCCCCCCCHHHHHHHHcCHHHHHHHHHHHH
Confidence            45667888999999999999999998865   88999999999999999876533

>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}

Probab=93.99  E-value=0.037  Score=55.66  Aligned_cols=55  Identities=18%  Similarity=0.405  Sum_probs=45.8

Q ss_pred             ccccHHHHHHhhcCHHHHHhhcCCCcccc---CCHHHHHHHhhChHHHHHHHHHHHhc
Q 016002          245 RFLTVDTLEKLMEDPQVQKMVYPSLPEEM---RNPASFKLMLQNPEYRKQLQEMLDGM  299 (397)
Q Consensus       245 ~~~~~~~l~~Mm~nPqmQkM~ypyLPe~M---RNP~tfk~MlqNPqyrqQL~~Ml~~m  299 (397)
                      ..|+.+.|..+++||++++-+.+|||+.=   +.++-++..++.|||+|.|+-+=..+
T Consensus       294 dvLt~e~l~pll~d~e~~erL~~~LP~~~~~~~t~e~L~e~l~SPQF~QaL~~fs~AL  351 (411)
T 2kr0_A          294 SVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAAL  351 (411)
T ss_dssp             GTSCHHHHHHHHTSHHHHHHHGGGCCSSCCCCCSHHHHTTSCCSHHHHHHHHHHHHHH
T ss_pred             HhhCHHHHHHHhcCHHHHHHHHhhCCCCcCcCCCHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            35678999999999999999999999853   37788888889999999997654443

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=85.94  E-value=0.2  Score=38.70  Aligned_cols=23  Identities=17%  Similarity=0.420  Sum_probs=13.8

Q ss_pred             CHHHHHHHhhChHHHHHHHHHHHh
Q 016002          275 NPASFKLMLQNPEYRKQLQEMLDG  298 (397)
Q Consensus       275 NP~tfk~MlqNPqyrqQL~~Ml~~  298 (397)
                      ||+|.++ |++|+|++.|+++.++
T Consensus        22 dP~t~~~-~~DP~~~~~lq~i~~N   44 (71)
T 2llv_A           22 NPKTSEM-MKDPQLVAKLIGYKQN   44 (71)
T ss_dssp             SSTTHHH-HHSCTHHHHHHHHHHS
T ss_pred             ChHHHHH-hcCHHHHHHHHHHHHC
Confidence            4444443 3677777777776665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00