Citrus Sinensis ID: 016038

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------

MKLKQLTMISSHSSSIVKSASASSTFPPSLHSLAPSSSSSSSSSCLPLQPKSRNFISLKPSAPFHGNSSVPLQKRNLSVVSASKSDDRDPSSSFQGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGVNGHGIDSIASFFMDYGYTKQDELRFPAKKLKAFWFSPPSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLTRRAA

cccccEEEEcccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccEEEEEEcccccccHHHHHHHHHHccccccccccccccccccEEccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccccHHHHHHHHHHcccccccccccEEEcccccEEEEEEccccEEEEEccccEEEEcccEEEEEEEccccccccccHHHHHHHHHccccccccHHHHHHHcHHHHHHHHcc

cccHEEEEEEccccHHHHHccccccccccHHccccHHHHHccccccccccccccccEcccccccccccccccccccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEcccEEEEEcccccccHHHHHHHHHHccccccccEcccHHcEEEEEEcccccccccccccccccccEEEEEEccHHHccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHccccccccccEEEEcccccEEEEccccccEEEEEccccEEEccccHHHHHHcccccccccccHHHHHHHHHccccccccHHHHHHHcHHHHcccccc

mklkqltmissHSSSIVksasasstfppslhslapsssssssssclplqpksrnfislkpsapfhgnssvplqkrnlsvvsasksddrdpsssfqggeSFFRTVLQSMEAVYLNRNPTAKAVLELVQSsgnnqicydhiafrtfgvnghgidSIASFFmdygytkqdelrfpakklkafwfsppsfhypdggsgvngplpRVFISELLVDQMSPQIQEIIRKYtetsgsgkKHAALASALgsltwgkplySEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNgfrlnseggvlkvspdglllqsstvadsfpfcfsdgvtesvpcsyIEFAErlvlpqyknlpeaevkefhrrdgfevgnadkiFESTSKEQLTRRAA

mklkqltmISSHSSSIVKSASASSTFPPSLHSLAPSSSSSSSSSCLPLQPKSRNFISLKPSApfhgnssvplqkRNLSVVSasksddrdpsssfqggESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGVNGHGIDSIASFFMDYGYTKQDELRFPAKKLKAFWFSPPSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERlvlpqyknlpeaevkefhrrdgfevgnadkifestskeqltrraa

MKLKQLTMisshsssivksasassTFppslhslapsssssssssclplqpksRNFISLKPSAPFHGNSSVPLQKRNLSVVSASKSDDRDPSSSFQGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGVNGHGIDSIASFFMDYGYTKQDELRFPAKKLKAFWFSPPSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLTRRAA

***************************************************************************************************FFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGVNGHGIDSIASFFMDYGYTKQDELRFPAKKLKAFWFSPPSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYT********HAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHR***F**********************

***************************************************************************************************FFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGVNGHGIDSIASFFMDYGYTKQDELRFPAKKLKAFWFSPPSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSE***LKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFEST**********

************************************************QPKSRNFISLKPSAPFHGNSSVPLQKRNLS****************QGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGVNGHGIDSIASFFMDYGYTKQDELRFPAKKLKAFWFSPPSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKY**********AALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFEST**********

*KLKQLTMISSHSSSIVKSASASSTFPPSLH*********SSSSCLPLQPKSRNFISLKPSAPFHGNSSVPLQKRNLSVVSASKSDDRDPSSSFQGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGVNGHGIDSIASFFMDYGYTKQDELRFPAKKLKAFWFSPPSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTS*********

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		396
296086430		381	unnamed protein product [Vitis vinifera]	0.911	0.947	0.712	1e-150
225424904		418	PREDICTED: uncharacterized protein LOC10	0.911	0.863	0.712	1e-150
356500527		375	PREDICTED: uncharacterized protein LOC54	0.896	0.946	0.710	1e-146
357486611		450	hypothetical protein MTR_5g038460 [Medic	0.866	0.762	0.708	1e-144
357486607		372	hypothetical protein MTR_5g038460 [Medic	0.762	0.811	0.781	1e-143
255558220		307	conserved hypothetical protein [Ricinus	0.765	0.986	0.801	1e-141
297848990		371	hypothetical protein ARALYDRAFT_887913 [	0.919	0.981	0.654	1e-139
18390717		371	uncharacterized protein [Arabidopsis tha	0.919	0.981	0.646	1e-138
449531822		372	PREDICTED: uncharacterized LOC101218869	0.797	0.849	0.747	1e-136
312282267		373	unnamed protein product [Thellungiella h	0.818	0.868	0.720	1e-136

>gi\|296086430\|emb\|CBI32019.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 270/379 (71%), Positives = 305/379 (80%), Gaps = 18/379 (4%)

Query: 36  SSSSSSSSSCLPL------QPKSRNFISLK---------PSAPFHGNS---SVPLQKRNL 77
           +++ +S SS  PL       P+S  F+SL+         P++  H +S   SV L  R+L
Sbjct: 3   AAAVTSFSSIFPLYSTIRTTPRSSTFLSLRSLTSFPSPLPTSFPHLSSPGNSVSLLNRSL 62

Query: 78  SVVSASKSDDRDPSSSFQGGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYD 137
              + S  +   P   FQG ESFFR VL SME VYLNRNPTAK+VLELV+S  N++ICYD
Sbjct: 63  CTATRSHMEPEPPVPPFQGAESFFRNVLGSMETVYLNRNPTAKSVLELVRSVDNDRICYD 122

Query: 138 HIAFRTFGVNGHGIDSIASFFMDYGYTKQDELRFPAKKLKAFWFSPPSFHYPDGGSGVNG 197
           H+AFRTFGVNG+GIDS+A FF+D+GY  ++ELRFPAKKL+A WFSPP   + D G+GV+G
Sbjct: 123 HLAFRTFGVNGYGIDSMAQFFLDFGYKPREELRFPAKKLRALWFSPPRISHTDTGTGVHG 182

Query: 198 PLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLA 257
           PLPR+FISELLVDQMSP  QEIIRKYTE SGSG KHAALASA G LTW KPLYSEFQQLA
Sbjct: 183 PLPRIFISELLVDQMSPPAQEIIRKYTEISGSGNKHAALASAQGFLTWEKPLYSEFQQLA 242

Query: 258 RESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDG 317
           RESEYAAWTLVNGYAVNHVTIS H LKS L NI+ LNQFIE+NGF+LNSEGGVLKVSPDG
Sbjct: 243 RESEYAAWTLVNGYAVNHVTISTHQLKSHLRNIEMLNQFIEENGFKLNSEGGVLKVSPDG 302

Query: 318 LLLQSSTVADSFPFCFSDGVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVG 377
           LLLQSSTVADS  F FSDGVTESVPCSYIEFAERLVLPQYKNLP+ EVKE+HRRDGFEVG
Sbjct: 303 LLLQSSTVADSVSFQFSDGVTESVPCSYIEFAERLVLPQYKNLPDKEVKEYHRRDGFEVG 362

Query: 378 NADKIFESTSKEQLTRRAA 396
           NADKIFESTSK+QLTRRAA
Sbjct: 363 NADKIFESTSKDQLTRRAA 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225424904\|ref\|XP_002276462.1\| PREDICTED: uncharacterized protein LOC100258620 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356500527\|ref\|XP_003519083.1\| PREDICTED: uncharacterized protein LOC547714 [Glycine max]	Back alignment and taxonomy information

>gi\|357486611\|ref\|XP_003613593.1\| hypothetical protein MTR_5g038460 [Medicago truncatula] gi\|355514928\|gb\|AES96551.1\| hypothetical protein MTR_5g038460 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357486607\|ref\|XP_003613591.1\| hypothetical protein MTR_5g038460 [Medicago truncatula] gi\|355514926\|gb\|AES96549.1\| hypothetical protein MTR_5g038460 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|255558220\|ref\|XP_002520137.1\| conserved hypothetical protein [Ricinus communis] gi\|223540629\|gb\|EEF42192.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|297848990\|ref\|XP_002892376.1\| hypothetical protein ARALYDRAFT_887913 [Arabidopsis lyrata subsp. lyrata] gi\|297338218\|gb\|EFH68635.1\| hypothetical protein ARALYDRAFT_887913 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|18390717|ref|NP_563777.1| uncharacterized protein [Arabidopsis thaliana] gi|8954042|gb|AAF82216.1|AC067971_24 ESTs gb|AI993254, gb|T76141 and gb|AA404864 come from this gene [Arabidopsis thaliana] gi|21593127|gb|AAM65076.1| unknown [Arabidopsis thaliana] gi|27311555|gb|AAO00743.1| expressed protein [Arabidopsis thaliana] gi|31711836|gb|AAP68274.1| At1g07040 [Arabidopsis thaliana] gi|110740580|dbj|BAE98395.1| hypothetical protein [Arabidopsis thaliana] gi|332189950|gb|AEE28071.1| uncharacterized protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|449531822\|ref\|XP_004172884.1\| PREDICTED: uncharacterized LOC101218869 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|312282267\|dbj\|BAJ33999.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		396
TAIR\|locus:2007372		371	AT1G07040 "AT1G07040" [Arabido	0.843	0.900	0.697	2.4e-124
TAIR\|locus:2205759		310	AT1G27030 "AT1G27030" [Arabido	0.757	0.967	0.532	4.7e-87
TAIR\|locus:2205749		308	AT1G27020 "AT1G27020" [Arabido	0.742	0.954	0.553	9.9e-87
UNIPROTKB\|Q9KNW5		263	VC_2615 "Putative uncharacteri	0.646	0.973	0.358	1.9e-35
TIGR_CMR\|VC_2615		263	VC_2615 "conserved hypothetica	0.646	0.973	0.358	1.9e-35
UNIPROTKB\|Q8EJ53		267	SO_0620 "Putative hydrolase in	0.631	0.936	0.364	2.3e-30
TIGR_CMR\|SO_0620		267	SO_0620 "conserved hypothetica	0.631	0.936	0.364	2.3e-30
UNIPROTKB\|Q489S8		265	CPS_0428 "Putative uncharacter	0.626	0.935	0.351	7.1e-29
TIGR_CMR\|CPS_0428		265	CPS_0428 "conserved hypothetic	0.626	0.935	0.351	7.1e-29

TAIR\|locus:2007372 AT1G07040 "AT1G07040" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1222 (435.2 bits), Expect = 2.4e-124, P = 2.4e-124
 Identities = 240/344 (69%), Positives = 280/344 (81%)

Query:    61 SAPFHGNSSVPLQ---KRNLSVVSASKSDDRDPSSSFQGG-------ESFFRTVLQSMEA 110
             S  F   S + L    KRNLSVV +S  D    S++   G       ESFFR+VL  ME 
Sbjct:    26 SVSFSAGSLIRLPSVGKRNLSVVVSSGRDSSMSSNNVSRGSSSKVAAESFFRSVLGQMET 85

Query:   111 VYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGVNGHGIDSIASFFMDYGYTKQDELR 170
             VYLNRNPT K+VLELV+S  + Q+CYDH+AFRTFG+ G+GIDS+ASFF+DYGYT  DEL+
Sbjct:    86 VYLNRNPTPKSVLELVRSVDDQQLCYDHLAFRTFGIGGYGIDSLASFFLDYGYTPMDELK 145

Query:   171 FPAKKLKAFWFSPPSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSG 230
             FPAKKL+A WF+PP+     GGSGVNGPLPRVFISELLVDQMS Q Q++IRKYTE S +G
Sbjct:   146 FPAKKLRALWFAPPNASAVPGGSGVNGPLPRVFISELLVDQMSSQTQDVIRKYTEASPNG 205

Query:   231 KKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNI 290
             KK+A L+SALG+LTW KPL SEF+QLARESEYAAWTLVNGYA+NHVTIS+H LKS LN I
Sbjct:   206 KKYAGLSSALGTLTWEKPLSSEFEQLARESEYAAWTLVNGYALNHVTISVHRLKSHLNKI 265

Query:   291 KSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEFAE 350
             K LNQF+E+ G +LNSEGGVLKVSPDG L QSSTVADS  F F+DGVT+S+PCSYIEFAE
Sbjct:   266 KKLNQFLEEKGIKLNSEGGVLKVSPDGGLQQSSTVADSISFKFADGVTKSIPCSYIEFAE 325

Query:   351 RLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLTRR 394
             RLVLPQY+N+PE+E++E HRRDGFEVGNADKIFEST +EQL+RR
Sbjct:   326 RLVLPQYQNIPESEIQESHRRDGFEVGNADKIFESTFQEQLSRR 369

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR\|locus:2205759 AT1G27030 "AT1G27030" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2205749 AT1G27020 "AT1G27020" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KNW5 VC_2615 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_2615 VC_2615 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8EJ53 SO_0620 "Putative hydrolase involved in arginine and ornithine metabolism" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_0620 SO_0620 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

UNIPROTKB\|Q489S8 CPS_0428 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_0428 CPS_0428 "conserved hypothetical protein" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		396
pfam07063		288	pfam07063, DUF1338, Domain of unknown function (DU	1e-125

>gnl\|CDD\|219283 pfam07063, DUF1338, Domain of unknown function (DUF1338)	Back alignment and domain information

 Score =  362 bits (932), Expect = e-125
 Identities = 123/300 (41%), Positives = 166/300 (55%), Gaps = 27/300 (9%)

Query: 102 RTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGVNGHGIDSIASFFMDY 161
           R    ++   YL R P+A  +++LV S     +  DH AFRTFG    G+ ++A  F+  
Sbjct: 2   RAFFAALWEDYLARVPSAGTIVDLVAS-VGETVLNDHGAFRTFGGPPLGLAALARLFLAL 60

Query: 162 GYTKQDELRFPAKKLKAFWFSPPSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIR 221
           GY       FPAKKL A  F PP           + PLPRVFISEL V+ +SP++QEII 
Sbjct: 61  GYVPVGYYDFPAKKLHARAFRPP-----------DAPLPRVFISELRVELLSPELQEIIE 109

Query: 222 KYTETS-------------GSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLV 268
           KY  +               +      LA  LG+  W  P  ++++QL  ESEYAAW L 
Sbjct: 110 KYLASRDIFTPRGLELLDAAAEDAAEFLAEFLGTFPWQLPSLADYEQLLAESEYAAWVLA 169

Query: 269 NGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADS 328
           +GYA+NH T+ ++ L     +I ++N  +++ GF LNS GG +K SPDGLL Q+ST AD 
Sbjct: 170 HGYAINHFTVRVNRLS-GFLDIDAVNAALKELGFPLNSSGGEIKGSPDGLLRQTSTKADE 228

Query: 329 FPFCFSDG-VTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTS 387
            P  F+DG V  SVP S+ EFA+R  LP   + P  E+ E    +GF  G+AD IFEST 
Sbjct: 229 EPVEFADGDVQRSVPGSFYEFAQRYPLPDGLDAPGDEIAEPILYEGFLPGSADGIFESTL 288

This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz). Length = 288

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		396
PF07063		302	DUF1338: Domain of unknown function (DUF1338); Int	100.0
COG5383		295	Uncharacterized protein conserved in bacteria [Fun	99.01
cd07250		191	HPPD_C_like C-terminal domain of 4-hydroxyphenylpy	97.91
TIGR01263		353	4HPPD 4-hydroxyphenylpyruvate dioxygenase. This pr	96.99
PF13669		109	Glyoxalase_4: Glyoxalase/Bleomycin resistance prot	96.03
PLN02875		398	4-hydroxyphenylpyruvate dioxygenase	93.36
COG3185		363	4-hydroxyphenylpyruvate dioxygenase and related he	92.52
KOG0638		381	consensus 4-hydroxyphenylpyruvate dioxygenase [Ami	90.57
cd07249		128	MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, als	87.9
cd07257		153	THT_oxygenase_C The C-terminal domain of 2,4,5-Tri	86.32
TIGR03081		128	metmalonyl_epim methylmalonyl-CoA epimerase. Membe	86.02
cd08353		142	Glo_EDI_BRP_like_7 This conserved domain belongs t	85.03
PLN02367		233	lactoylglutathione lyase	83.3

>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function	Back alignment and domain information

Probab=100.00  E-value=4.3e-90  Score=675.85  Aligned_cols=275  Identities=42%  Similarity=0.685  Sum_probs=230.6

Q ss_pred             HHHHHHHHHHHHhhCCCHHHHHHHHHhhCCCccccceEEEeecCCCCCcHHHHHHHHHhcCCeeccccccccCCceeEee
Q 016038          102 RTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGVNGHGIDSIASFFMDYGYTKQDELRFPAKKLKAFWF  181 (396)
Q Consensus       102 r~~f~~Lw~~Y~~rvP~a~~i~~lv~~~~g~~i~nDH~AfRT~g~~~~Gi~~lariF~~LGY~~~G~Y~Fp~KkL~At~f  181 (396)
                      ++++++||++|+++||+|++|+++|.+ .|++|+||||||||||.++.||++|+++|++|||+++|+|+|+.|||+|+||
T Consensus         2 ~~~~~~L~~~Y~~~vP~~~~~~~lv~~-~~~~v~~dH~A~RT~~~~~~gl~~lar~F~~lGy~~~G~Y~f~~kkl~a~~f   80 (302)
T PF07063_consen    2 QAFFDALWEMYLQRVPSAGTLVELVAE-VGETVLNDHGAFRTFGGPPYGLASLARIFAALGYEPVGYYDFPAKKLHATWF   80 (302)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHHHHHH-TTCHCHEEEEEEEEECTSHCCHHHHHHHHHTTTEEEEEEEEEGGGTEEEEEE
T ss_pred             hHHHHHHHHHHHHHCcCHHHHHHHHHH-cCccceeeeeEEEecCCCchhHHHHHHHHHHcCCEEcceecccccCceEEEe
Confidence            478899999999999999999999998 7999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCCCeEEeeccccCCCCHHHHHHHHHHhhhcCCC--------------------chHHHHHHHhc
Q 016038          182 SPPSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSG--------------------KKHAALASALG  241 (396)
Q Consensus       182 ~ppd~~~~~~~~~~~~~~PRIFISEL~ve~lS~e~Q~iI~~~v~~~~~~--------------------~~~~~~~~~l~  241 (396)
                      +|||++.+         .||||||||+||+||+++|++|+++|.++..-                    +..+++..+++
T Consensus        81 ~p~d~~~~---------~prvFiSeL~~e~ls~~~q~~i~~~l~~r~~~~~~~~~~l~~~~~~~~l~~~~a~~~v~~~~~  151 (302)
T PF07063_consen   81 RPPDPPEL---------APRVFISELRVEELSPELQEIIEKYLSRRDPFSPRPLELLDQAERQGGLSAEQADEFVAEALS  151 (302)
T ss_dssp             EETSCTCC---------C-EEEEEEE-GGGSSHHHHHHHHHHHTTS-GCGHHHHHHHHHHHHHSCEBHHHHHHHHHHHGG
T ss_pred             cCCCCccc---------CCeEEeecccHhhcCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc
Confidence            99998643         39999999999999999999999999554321                    11235567899


Q ss_pred             CCCCCC--CCHHHHHHHHHhhhhhHHHhhhCCCCcccceecccccccCCCHHHHHHHHHHcCCccccCCCeeEeCCCcce
Q 016038          242 SLTWGK--PLYSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLL  319 (396)
Q Consensus       242 ~~~W~~--Ps~adYe~L~~ESeyAAWia~~Gy~~NHfTvsVn~L~~r~~DIe~vn~~Lk~~G~~ln~~GG~IkgSP~glL  319 (396)
                      +|+|+.  |+++||++|++||||||||+++||++||||++||+|+. +.||++||++|+++|++||++||+|||||+++|
T Consensus       152 ~~~W~~~~ps~~~Y~~L~~eSe~aAWi~~~G~~~NH~T~~v~~l~~-~~dI~~v~~~l~~~G~~~n~~g~~Iegsp~~lL  230 (302)
T PF07063_consen  152 GFPWQHRAPSLADYQTLLAESEYAAWIAAHGYHINHFTPRVNRLKK-FLDIDAVNAFLKERGIPMNDSGGEIEGSPDGLL  230 (302)
T ss_dssp             GCSS-SB-SBHHHHHHHHHH-HHHHHHHHHTCS-SEEEEETTT-TT--S-HHHHHHHHHHTT--B--TTSSSEECCCCSE
T ss_pred             ccCCCCCCCCHHHHHHHHHHhHHHHhhcccccccceeeceeecccc-cccHHHHHHHHHHcCCCccccCCceEECCCCCE
Confidence            999998  99999999999999999999999999999999999998 699999999999999999999999999999999


Q ss_pred             EEeeccccceeEEecCC----cEeeeccceEEeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhc
Q 016038          320 LQSSTVADSFPFCFSDG----VTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTS  387 (396)
Q Consensus       320 rQSST~Ad~~~v~FaDG----~~~~IPgsfyEFaeR~~lp~~~~l~~~el~~~~~~~GF~a~NAdkIFEST~  387 (396)
                      |||||+|++++|+|.||    +++.||||||||+||+|+|++.++++.+..+.++|+||+++|||||||||+
T Consensus       231 rQtS~~A~~~~v~F~d~~g~~~~~~ip~~f~Ef~~R~~~~~~~~~~~~~~~~~~~yegF~~~sA~~IFeSt~  302 (302)
T PF07063_consen  231 RQTSTMADEEEVTFADGDGSLVEGSIPGSFYEFAQRYPLPEGLILPGDEIAEPILYEGFLPGSADGIFESTL  302 (302)
T ss_dssp             EEEEBEEEEEEEEETTETS-ECEEEEEEEEEEEEEE-CTTCCHHHTTSEEEEESB--SSS------------
T ss_pred             EEEeeccceeEEEEecCCCceeeeEeeeeEEeehhhccCcccccCccccccCCcccCCCChhhhhhhhccCC
Confidence            99999999999999998    677899999999999999999888899999999999999999999999995

The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.

>COG5383 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS)	Back alignment and domain information

>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase	Back alignment and domain information

>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A	Back alignment and domain information

>PLN02875 4-hydroxyphenylpyruvate dioxygenase	Back alignment and domain information

>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]	Back alignment and domain information

>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]	Back alignment and domain information

>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE)	Back alignment and domain information

>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway	Back alignment and domain information

>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase	Back alignment and domain information

>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases	Back alignment and domain information

>PLN02367 lactoylglutathione lyase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		396
3lho_A		267	Crystal Structure Of Putative Hydrolase (Yp_751971.		1e-31
3iuz_A		340	Crystal Structure Of Putative Glyoxalase Superfamil		2e-06

>pdb|3LHO|A Chain A, Crystal Structure Of Putative Hydrolase (Yp_751971.1) From Shewanella Frigidimarina Ncimb 400 At 1.80 A Resolution Length = 267

Back alignment and structure

Iteration: 1

Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 139/279 (49%), Gaps = 34/279 (12%) Query: 112 YLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGVNGHGIDSIASFFMDYGYTKQDELRF 171 Y+ P+A + +L+ I DHIA RTF + + +A F GY + +F Sbjct: 17 YIKXTPSAAKIHQLLGHGA--PIINDHIALRTFNIAKVNLSVLAKHFTSIGYVDSGDYKF 74 Query: 172 PAKKLKAFWFSPPSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGK 231 KKL A F +PD P+VFISELLV++ SP++Q+ I + + Sbjct: 75 EQKKLIA-----KHFEHPDPKQ------PKVFISELLVEEFSPEVQKSIHGLID-----Q 118 Query: 232 KHAALASALGSLTWGKPL---YSEFQQLARESEYAAWTLVNGYAVNHVTISIHHLKSQLN 288 A +A + G+ + +Q L ESEYAAW GY NH T+SI+ L + Sbjct: 119 VDIAATTADNFIYSGRHWDVDKATYQALLAESEYAAWVAALGYRANHFTVSINDL-PEFE 177 Query: 289 NIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGVTESVPCSYIEF 348 I+ +NQ ++ GF LNS GG +K SP+ LL QSST AD F+DG E +P + EF Sbjct: 178 RIEDVNQALKQAGFVLNSSGGEVKGSPEVLLEQSSTXADKVVVNFTDGDVE-IPSCFYEF 236 Query: 349 AERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTS 387 A R P A + + GF +ADKIFEST+ Sbjct: 237 ARR--------YPXANGQLY---TGFVAASADKIFESTN 264

PyMOL of 3lho

>pdb|3IUZ|A Chain A, Crystal Structure Of Putative Glyoxalase Superfamily Protein (Yp_299723.1) From Ralstonia Eutropha Jmp134 At 1.90 A Resolution Length = 340

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		396
3lho_A		267	Putative hydrolase; structural genomics, joint cen	1e-97
3iuz_A		340	Putative glyoxalase superfamily protein; struct ge	2e-77
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09

>3lho_A Putative hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: PG4; 1.80A {Shewanella frigidimarina} Length = 267	Back alignment and structure

 Score =  291 bits (745), Expect = 1e-97
 Identities = 95/292 (32%), Positives = 137/292 (46%), Gaps = 28/292 (9%)

Query: 96  GGESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGVNGHGIDSIA 155
           G  +    +  ++   Y+   P+A  + +L+       I  DHIA RTF +    +  +A
Sbjct: 1   GMHTDVNALFAALWQDYIKMTPSAAKIHQLLGH--GAPIINDHIALRTFNIAKVNLSVLA 58

Query: 156 SFFMDYGYTKQDELRFPAKKLKAFWFSPPSFHYPDGGSGVNGPLPRVFISELLVDQMSPQ 215
             F   GY    + +F  KKL A  F  P           +   P+VFISELLV++ SP+
Sbjct: 59  KHFTSIGYVDSGDYKFEQKKLIAKHFEHP-----------DPKQPKVFISELLVEEFSPE 107

Query: 216 IQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVNGYAVNH 275
           +Q+ I    +        A   + + S        + +Q L  ESEYAAW    GY  NH
Sbjct: 108 VQKSIHGLIDQVDIAATTA--DNFIYSGRHWDVDKATYQALLAESEYAAWVAALGYRANH 165

Query: 276 VTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSD 335
            T+SI+ L  +   I+ +NQ ++  GF LNS GG +K SP+ LL QSST+AD     F+D
Sbjct: 166 FTVSINDLP-EFERIEDVNQALKQAGFVLNSSGGEVKGSPEVLLEQSSTMADKVVVNFTD 224

Query: 336 GVTESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTS 387
           G    +P  + EFA R  +                  GF   +ADKIFEST+
Sbjct: 225 G-DVEIPSCFYEFARRYPMA-----------NGQLYTGFVAASADKIFESTN 264

PyMOL of 3lho

>3iuz_A Putative glyoxalase superfamily protein; struct genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: MLY P6G PGE; 1.90A {Ralstonia eutropha} Length = 340	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		396
3lho_A		267	Putative hydrolase; structural genomics, joint cen	100.0
3iuz_A		340	Putative glyoxalase superfamily protein; struct ge	100.0
2rjb_A		455	Uncharacterized protein; structural genomics, PSI-	100.0
2r5v_A		357	PCZA361.1; dioxygenase, non-heme iron, vancomycin,	97.97
1t47_A		381	4-hydroxyphenylpyruvate dioxygenase; triketone inh	97.84
1cjx_A		357	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	97.46
3isq_A		393	4-hydroxyphenylpyruvate dioxygenase; tyrosine meta	97.38
1sqd_A		424	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	97.02
1sp8_A		418	4-hydroxyphenylpyruvate dioxygenase; oxidoreductas	96.91
3oa4_A		161	Glyoxalase, BH1468 protein; structural genomics, p	94.45
3gm5_A		159	Lactoylglutathione lyase and related lyases; sheet	94.25
3rmu_A		134	Methylmalonyl-COA epimerase, mitochondrial; struct	93.11
3hdp_A		133	Glyoxalase-I; glutathione,lyase, methylglyoxal,110	92.54
1jc4_A		148	Methylmalonyl-COA epimerase; vicinal oxygen chelat	90.45

>3lho_A Putative hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: PG4; 1.80A {Shewanella frigidimarina}	Back alignment and structure

Probab=100.00  E-value=3.7e-95  Score=698.52  Aligned_cols=263  Identities=36%  Similarity=0.560  Sum_probs=236.4

Q ss_pred             hHHHHHHHHHHHHHHHhhCCCHHHHHHHHHhhCCCccccceEEEeecCCCCCcHHHHHHHHHhcCCeeccccccccCCce
Q 016038           98 ESFFRTVLQSMEAVYLNRNPTAKAVLELVQSSGNNQICYDHIAFRTFGVNGHGIDSIASFFMDYGYTKQDELRFPAKKLK  177 (396)
Q Consensus        98 ~~~lr~~f~~Lw~~Y~~rvP~a~~i~~lv~~~~g~~i~nDH~AfRT~g~~~~Gi~~lariF~~LGY~~~G~Y~Fp~KkL~  177 (396)
                      ..+++++|++||++|+++||++++|++++.+  |++|+||||||||||+++.||++|+++|++|||+++|+|+|+.|||+
T Consensus         3 ~~~~~~l~~~Lw~~Y~~~~P~a~~i~~l~~~--~~~i~nDHiA~RT~~~~~~gi~~la~~F~~lGY~~~G~Y~f~~kkL~   80 (267)
T 3lho_A            3 HTDVNALFAALWQDYIKMTPSAAKIHQLLGH--GAPIINDHIALRTFNIAKVNLSVLAKHFTSIGYVDSGDYKFEQKKLI   80 (267)
T ss_dssp             CSCHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TSCCCEEEEEEEEESCGGGCHHHHHHHHHTTTCEEEEEEEETTTTEE
T ss_pred             cccHHHHHHHHHHHHHHHCCCHHHHHHHHhc--CCceecceEEEEecCCCCccHHHHHHHHHHcCCeEcceeccCCCccE
Confidence            4568999999999999999999999999886  88999999999999999999999999999999999999999999999


Q ss_pred             eEeecCCCCCCCCCCCCCCCCCCeEEeeccccCCCCHHHHHHHHHHhhhcCCCchHHHHHHHhcCCCCCCCCHHHHHHHH
Q 016038          178 AFWFSPPSFHYPDGGSGVNGPLPRVFISELLVDQMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLA  257 (396)
Q Consensus       178 At~f~ppd~~~~~~~~~~~~~~PRIFISEL~ve~lS~e~Q~iI~~~v~~~~~~~~~~~~~~~l~~~~W~~Ps~adYe~L~  257 (396)
                      |+||+|||+           ++||||||||+||+||+++|++|+++|+++.++...+ .+.++++++|+ |+++||++|+
T Consensus        81 A~~f~hpd~-----------~~prvFiSEL~ve~lS~~~q~~i~~~v~~~~~~~l~a-~~f~~~~~~W~-p~~~~Y~~L~  147 (267)
T 3lho_A           81 AKHFEHPDP-----------KQPKVFISELLVEEFSPEVQKSIHGLIDQVDIAATTA-DNFIYSGRHWD-VDKATYQALL  147 (267)
T ss_dssp             EEEEECSST-----------TSCEEEEEEECGGGSCHHHHHHHHHHHTTSCGGGGGS-TTGGGCBCCSC-CCHHHHHHHH
T ss_pred             EEEeCCCCC-----------CCCeEEEeeccHhhCCHHHHHHHHHHHhccChhhcch-hhhhhcCCCCC-CCHHHHHHHH
Confidence            999999985           4899999999999999999999999999977542211 22478899999 9999999999


Q ss_pred             HhhhhhHHHhhhCCCCcccceecccccccCCCHHHHHHHHHHcCCccccCCCeeEeCCCcceEEeeccccceeEEecCCc
Q 016038          258 RESEYAAWTLVNGYAVNHVTISIHHLKSQLNNIKSLNQFIEDNGFRLNSEGGVLKVSPDGLLLQSSTVADSFPFCFSDGV  337 (396)
Q Consensus       258 ~ESeyAAWia~~Gy~~NHfTvsVn~L~~r~~DIe~vn~~Lk~~G~~ln~~GG~IkgSP~glLrQSST~Ad~~~v~FaDG~  337 (396)
                      +||||||||++|||++||||++||+|+. +.||++||++|+++|++||++||+|||||+++||||||||++++|+|.||+
T Consensus       148 ~ese~aAWv~~~G~~~NH~T~~v~~L~~-~~dI~~v~~~l~~~G~~~n~~Gg~Ikgsp~~lLrQtSt~A~~~~v~F~dg~  226 (267)
T 3lho_A          148 AESEYAAWVAALGYRANHFTVSINDLPE-FERIEDVNQALKQAGFVLNSSGGEVKGSPEVLLEQSSTMADKVVVNFTDGD  226 (267)
T ss_dssp             HHCHHHHHHHHHCBSCSEEEEETTTCTT-CCCHHHHHHHHHHTTCCBCCTTCSSEEEGGGTEEEEEBCCCEEEEEETTEE
T ss_pred             HhChHHHHHhhcCCccceeehhhcccCC-CCCHHHHHHHHHHcCCCcccCCCEEEECCCCcEEEEEccccceeEEecCCc
Confidence            9999999999999999999999999996 999999999999999999999999999999999999999999999999997


Q ss_pred             EeeeccceEEeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhch
Q 016038          338 TESVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSK  388 (396)
Q Consensus       338 ~~~IPgsfyEFaeR~~lp~~~~l~~~el~~~~~~~GF~a~NAdkIFEST~~  388 (396)
                      . .|||||||||||+++|+|      +     ||+||+++|||||||||+.
T Consensus       227 ~-~ipg~fyEFa~R~~~~~~------~-----l~~gF~a~nAdkIFesT~~  265 (267)
T 3lho_A          227 V-EIPSCFYEFARRYPMANG------Q-----LYTGFVAASADKIFESTNA  265 (267)
T ss_dssp             E-EEECCCCEEEEECBCTTS------S-----BCCCSSCC-----------
T ss_pred             e-ecCceEEEEEEeccCCcc------c-----cccccccccchhHHHhhhc
Confidence            4 799999999999999976      3     5999999999999999985

PyMOL of 3lho

>3iuz_A Putative glyoxalase superfamily protein; struct genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: MLY P6G PGE; 1.90A {Ralstonia eutropha}	Back alignment and structure

>2rjb_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Shigella flexneri}	Back alignment and structure

>2r5v_A PCZA361.1; dioxygenase, non-heme iron, vancomycin, oxidoreductase; HET: HHH; 2.30A {Amycolatopsis orientalis}	Back alignment and structure

>1t47_A 4-hydroxyphenylpyruvate dioxygenase; triketone inhibitor, iron, oxidoreductase; HET: NTD; 2.50A {Streptomyces avermitilis} SCOP: d.32.1.3 d.32.1.3	Back alignment and structure

>1cjx_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase, iron; 2.40A {Pseudomonas fluorescens} SCOP: d.32.1.3 d.32.1.3	Back alignment and structure

>3isq_A 4-hydroxyphenylpyruvate dioxygenase; tyrosine metabolism, DIS mutation, iron, mental retardation, metal-binding, oxidored phenylalanine catabolism; 1.75A {Homo sapiens} PDB: 1sqi_A*	Back alignment and structure

>1sqd_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 1.80A {Arabidopsis thaliana} SCOP: d.32.1.3 d.32.1.3 PDB: 1tfz_A* 1tg5_A* 1sp9_A	Back alignment and structure

>1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea mays} SCOP: d.32.1.3 d.32.1.3	Back alignment and structure

>3oa4_A Glyoxalase, BH1468 protein; structural genomics, protein structure initiative, glyoxalas PSI-biology, lyase; 1.94A {Bacillus halodurans}	Back alignment and structure

>3gm5_A Lactoylglutathione lyase and related lyases; sheet-helix-sheet-sheet-sheet motif, isomerase; HET: CIT; 2.00A {Thermoanaerobacter tengcongensis}	Back alignment and structure

>3rmu_A Methylmalonyl-COA epimerase, mitochondrial; structural genomics consortium, SGC, vitamin B12, mitochondr isomerase; HET: PG4; 1.80A {Homo sapiens} SCOP: d.32.1.0	Back alignment and structure

>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2, structural GENOMIC,NYSGXRC., structural genomics; 2.06A {Clostridium acetobutylicum} PDB: 2qh0_A	Back alignment and structure

>1jc4_A Methylmalonyl-COA epimerase; vicinal oxygen chelate superfamily, isomerase; 2.00A {Propionibacterium freudenreichiisubsp} SCOP: d.32.1.4 PDB: 1jc5_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		396
d1cjxa2		203	4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudom	97.78
d1t47a2		199	4-hydroxyphenylpyruvate dioxygenase, HppD {Strepto	97.52
d1sp8a2		224	4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Z	97.23
d1sqia2		210	4-hydroxyphenylpyruvate dioxygenase, HppD {Human (	96.33
d1sqda2		230	4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-e	95.39
d1sqia1		149	4-hydroxyphenylpyruvate dioxygenase, HppD {Human (	95.17
d1ss4a_		149	Hypothetical protein BC1747 {Bacillus cereus (stra	94.94
d1sqda1		167	4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-e	94.5
d1sp8a1		172	4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Z	91.02
d1t47a1		163	4-hydroxyphenylpyruvate dioxygenase, HppD {Strepto	90.79
d1qipa_		176	Glyoxalase I (lactoylglutathione lyase) {Human (Ho	89.92
d1jc4a_		145	Methylmalonyl-CoA epimerase {Propionibacterium she	89.0

>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
family: Extradiol dioxygenases
domain: 4-hydroxyphenylpyruvate dioxygenase, HppD
species: Pseudomonas fluorescens [TaxId: 294]

Probab=97.78  E-value=9.8e-05  Score=65.65  Aligned_cols=160  Identities=20%  Similarity=0.274  Sum_probs=105.1

Q ss_pred             cccceEEEeecCCCCCcHHHHHHHHH-hcCCeeccccccccCC--ceeEeecCCCCCCCCCCCCCCCCCCeEEeeccccC
Q 016038          134 ICYDHIAFRTFGVNGHGIDSIASFFM-DYGYTKQDELRFPAKK--LKAFWFSPPSFHYPDGGSGVNGPLPRVFISELLVD  210 (396)
Q Consensus       134 i~nDH~AfRT~g~~~~Gi~~lariF~-~LGY~~~G~Y~Fp~Kk--L~At~f~ppd~~~~~~~~~~~~~~PRIFISEL~ve  210 (396)
                      ..-||+|+.   ++.-.++.-..++. .||+++....+.+..+  |.+.+...|+.            .-++.+.+-.. 
T Consensus         4 ~~IDHIa~~---V~~~~l~~a~~FY~~vlGf~~~~~~di~~~~~~l~s~~~~~~~~------------~~~~~l~~~~~-   67 (203)
T d1cjxa2           4 KVIDHLTHN---VYRGRMVYWANFYEKLFNFREARYFDIKGEYTGLTSKAMSAPDG------------MIRIPLNEESS-   67 (203)
T ss_dssp             EEEEEECEE---CCTTHHHHHHHHHHHHHCCEEEEEEEEECSSCEEEEEEEECTTS------------SCEEEEEEECT-
T ss_pred             CeeCeeEec---cChhhHHHHHHHHHHHhCCEEeEEEecCCCcceEEEEEeecccc------------ccceecccCCC-
Confidence            346999988   35567999999997 5699998776666544  67777776653            12333322100 


Q ss_pred             CCCHHHHHHHHHHhhhcCCCchHHHHHHHhcCCCCCCCCHHHHHHHHHhhhhhHHHhhh-CCCCcccceecccccccCCC
Q 016038          211 QMSPQIQEIIRKYTETSGSGKKHAALASALGSLTWGKPLYSEFQQLARESEYAAWTLVN-GYAVNHVTISIHHLKSQLNN  289 (396)
Q Consensus       211 ~lS~e~Q~iI~~~v~~~~~~~~~~~~~~~l~~~~W~~Ps~adYe~L~~ESeyAAWia~~-Gy~~NHfTvsVn~L~~r~~D  289 (396)
                                                                    ...|+..-++..+ |-.+.|+++       +++|
T Consensus        68 ----------------------------------------------~~~sqi~~fl~~~~g~GiqHIAf-------~vdD   94 (203)
T d1cjxa2          68 ----------------------------------------------KGAGQIEEFLMQFNGEGIQHVAF-------LTDD   94 (203)
T ss_dssp             ----------------------------------------------TCCSHHHHHHHHHTSSBCCEEEE-------EESC
T ss_pred             ----------------------------------------------CCccHHHHHHHhcCCCCCceEEE-------EeCC
Confidence                                                          0123445556665 457999998       5779


Q ss_pred             HHHHHHHHHHcCCccccCCC---------eeE---------------------eCCCcceEEeeccccceeEEecCCcEe
Q 016038          290 IKSLNQFIEDNGFRLNSEGG---------VLK---------------------VSPDGLLLQSSTVADSFPFCFSDGVTE  339 (396)
Q Consensus       290 Ie~vn~~Lk~~G~~ln~~GG---------~Ik---------------------gSP~glLrQSST~Ad~~~v~FaDG~~~  339 (396)
                      |.+.-+.|+++|+++-+.-.         ++.                     +...+.|.|.-|...            
T Consensus        95 I~aav~~L~~~Gv~fL~~pp~~Yy~~l~~~~~~~~~~~~~l~~~~iL~D~d~~~~~~~~llqifT~~~------------  162 (203)
T d1cjxa2          95 LVKTWDALKKIGMRFMTAPPDTYYEMLEGRLPDHGEPVDQLQARGILLDGSSVEGDKRLLLQIFSETL------------  162 (203)
T ss_dssp             HHHHHHHHHHTTCCBCCCCCHHHHHTHHHHSTTCCCCHHHHHHHTCEEEEEEETTEEEEEEEEEBCCC------------
T ss_pred             HHHHHHHHHhcCCccccCchhhHHHHHHHhhccccchHHHHHHcCEEEecCCCCCCCceEEEEeccCC------------
Confidence            99999999999998754100         000                     001144666555221            


Q ss_pred             eeccceEEeeeeccCCCCCCCChhhhhhhccccCcCCCChhHHHHhhchhhhh
Q 016038          340 SVPCSYIEFAERLVLPQYKNLPEAEVKEFHRRDGFEVGNADKIFESTSKEQLT  392 (396)
Q Consensus       340 ~IPgsfyEFaeR~~lp~~~~l~~~el~~~~~~~GF~a~NAdkIFEST~~~~~~  392 (396)
                       .++=|+|++||.    +             ++||=++|+...||+--..|..
T Consensus       163 -~~~~FfEiiqR~----g-------------~~GfG~~N~~al~~a~e~~q~~  197 (203)
T d1cjxa2         163 -MGPVFFEFIQRK----G-------------DDGFGEGNFKALFESIERDQVR  197 (203)
T ss_dssp             -BTTBEEEEEEEE----B-------------CCSCCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCeEEEEEEEc----C-------------CCccchhhHHHHHHHHHHHHHH
Confidence             134589999997    2             7999999999999998765653

PyMOL of d1cjxa2

>d1t47a2 d.32.1.3 (A:179-377) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]}	Back information, alignment and structure

>d1sp8a2 d.32.1.3 (A:208-431) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1sqia2 d.32.1.3 (A:157-366) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sqda2 d.32.1.3 (A:181-410) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1sqia1 d.32.1.3 (A:8-156) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ss4a_ d.32.1.6 (A:) Hypothetical protein BC1747 {Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]}	Back information, alignment and structure

>d1sqda1 d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1sp8a1 d.32.1.3 (A:36-207) 4-hydroxyphenylpyruvate dioxygenase, HppD {Corn (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1t47a1 d.32.1.3 (A:16-178) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]}	Back information, alignment and structure

>d1qipa_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jc4a_ d.32.1.4 (A:) Methylmalonyl-CoA epimerase {Propionibacterium shermanii [TaxId: 1752]}	Back information, alignment and structure