Citrus Sinensis ID: 016040

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
MAVETETELETPLRGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALA
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccHHHHHHHccccEEcccEEEccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHEEEHHHHHHccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
cccEccccccccccccccEEEEEcccccccccHHcHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHcccccHHHHHccHHHHHHHHHHHHHcccEEEEcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccc
maveteteletplrgtscwhqwnkqaffpepsfenttSYKSALKQTYPRlknrlfsrstdaTELITLQQeskqplqkcltwwdltwlcfgsvvgsGIFVITgqeakkhagpAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDsnnsdllrFKVDcfadgfnllDPVAVLILLVCNgiamsgtrrsSWLNWISSIVSSCVIVFVIIVGFvhgkttnldpflpygtegvFEAAAVVYWSYTGFDMVATMAEetkkpsrdipiglvgSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARahmippwfala
maveteteletplrgtscwhQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITlqqeskqpLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALA
MAVETETELETPLRGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVlsylasglsallsaFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNIlleavvgaaglaRSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWissivsscvivfviivGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALA
**************GTSCWHQWNKQAFFPE***********************LF*******ELITL******PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAE******RDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFA**
********************QWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLF***********************LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALA
*************RGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALA
****************SCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALA
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAVETETELETPLRGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query396 2.2.26 [Sep-21-2011]
Q9SHH0 590 Cationic amino acid trans yes no 0.992 0.666 0.720 1e-163
O64759 569 Cationic amino acid trans no no 0.941 0.655 0.637 1e-143
Q84MA5 594 Cationic amino acid trans no no 0.949 0.632 0.548 1e-121
Q9LZ20 583 Cationic amino acid trans no no 0.911 0.619 0.432 2e-77
Q9SQZ0 584 Cationic amino acid trans no no 0.919 0.623 0.416 1e-76
Q797A7 461 Uncharacterized amino aci yes no 0.828 0.711 0.354 7e-51
Q8BLQ7 635 Cationic amino acid trans yes no 0.780 0.486 0.344 9e-47
Q8GYB4 609 Cationic amino acid trans no no 0.851 0.553 0.304 3e-46
O43246 635 Cationic amino acid trans yes no 0.747 0.466 0.354 1e-45
Q9ASS7 635 Cationic amino acid trans no no 0.813 0.507 0.303 4e-45
>sp|Q9SHH0|CAAT8_ARATH Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=1 SV=1 Back     alignment and function desciption
 Score =  575 bits (1483), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 286/397 (72%), Positives = 335/397 (84%), Gaps = 4/397 (1%)

Query: 2   AVETETELET---PLRGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRS 58
           ++E   +LE+    L     + +W KQ FFPE SF++ ++YKSAL  T PRL +RL SRS
Sbjct: 5   SMEEAHQLESRSDDLSQRRSYWRWRKQDFFPEFSFQSFSTYKSALSATCPRLADRLLSRS 64

Query: 59  TDATELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYL 118
           +DA EL   ++ES+ P+++CLTWWDL WL FGSVVGSG+FVITGQEA+  AGPA+VLSY 
Sbjct: 65  SDAYELDAARRESENPMRRCLTWWDLLWLSFGSVVGSGVFVITGQEARVGAGPAVVLSYA 124

Query: 119 ASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARS 178
            SG+SALLS  CY EF VEIPVAGGSFS+LRVELGDF+A+IAAGNILLEA+VGAAGL RS
Sbjct: 125 ISGVSALLSVLCYAEFGVEIPVAGGSFSYLRVELGDFIAFIAAGNILLEAMVGAAGLGRS 184

Query: 179 WSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238
           WSSYLAS++  N+SD  R KVD FA GF+LLDPVAV +LLV NGIAM+GT+R+SWLN I+
Sbjct: 185 WSSYLASLVK-NDSDYFRIKVDSFAKGFDLLDPVAVAVLLVANGIAMTGTKRTSWLNLIT 243

Query: 239 SIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298
           S+V+ C+IVF+++VGF H KT+NL PF PYG +GV ++AAVVYWSYTGFDMVA MAEET+
Sbjct: 244 SMVTVCIIVFIVVVGFTHSKTSNLVPFFPYGAKGVVQSAAVVYWSYTGFDMVANMAEETE 303

Query: 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVS 358
           KPSRDIPIGLVGSM MIT VYCLMALALTMMVKYTEID NAAYS+AF QIGM WAKYLV 
Sbjct: 304 KPSRDIPIGLVGSMSMITVVYCLMALALTMMVKYTEIDANAAYSVAFAQIGMKWAKYLVG 363

Query: 359 VCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFAL 395
           +CALKGMTTSLLVGSLGQARYTTQIAR+HMIPPWFAL
Sbjct: 364 ICALKGMTTSLLVGSLGQARYTTQIARSHMIPPWFAL 400
Permease involved in the transport of the cationic neutral or acidic amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|O64759|CAAT5_ARATH Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5 PE=1 SV=1 Back     alignment and function description
>sp|Q84MA5|CAAT1_ARATH Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LZ20|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana GN=CAT6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SQZ0|CAAT7_ARATH Cationic amino acid transporter 7, chloroplastic OS=Arabidopsis thaliana GN=CAT7 PE=3 SV=1 Back     alignment and function description
>sp|Q797A7|YFNA_BACSU Uncharacterized amino acid permease YfnA OS=Bacillus subtilis (strain 168) GN=yfnA PE=3 SV=1 Back     alignment and function description
>sp|Q8BLQ7|CTR4_MOUSE Cationic amino acid transporter 4 OS=Mus musculus GN=Slc7a4 PE=1 SV=1 Back     alignment and function description
>sp|Q8GYB4|CAAT3_ARATH Cationic amino acid transporter 3, mitochondrial OS=Arabidopsis thaliana GN=CAT3 PE=2 SV=1 Back     alignment and function description
>sp|O43246|CTR4_HUMAN Cationic amino acid transporter 4 OS=Homo sapiens GN=SLC7A4 PE=2 SV=3 Back     alignment and function description
>sp|Q9ASS7|CAAT2_ARATH Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
255555517 575 cationic amino acid transporter, putativ 0.964 0.664 0.759 1e-175
224061339 577 cationic amino acid transporter [Populus 0.939 0.644 0.752 1e-170
225423859 571 PREDICTED: uncharacterized amino acid pe 0.972 0.674 0.717 1e-164
297737874 885 unnamed protein product [Vitis vinifera] 0.941 0.421 0.733 1e-163
449515788 630 PREDICTED: cationic amino acid transport 0.957 0.601 0.709 1e-162
449439077 594 PREDICTED: cationic amino acid transport 0.957 0.638 0.709 1e-162
356532335 592 PREDICTED: uncharacterized amino acid pe 0.944 0.631 0.722 1e-161
297844646 585 hypothetical protein ARALYDRAFT_471910 [ 0.989 0.670 0.725 1e-161
15220035 590 cationic amino acid transporter 8 [Arabi 0.992 0.666 0.720 1e-161
147860151 552 hypothetical protein VITISV_020011 [Viti 0.924 0.663 0.676 1e-150
>gi|255555517|ref|XP_002518795.1| cationic amino acid transporter, putative [Ricinus communis] gi|223542176|gb|EEF43720.1| cationic amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 293/386 (75%), Positives = 343/386 (88%), Gaps = 4/386 (1%)

Query: 10  ETPLRGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQ 69
           + P++  S W +W KQ FFPEP+F+N ++Y  AL QTYPRLK+RL SRS++  EL+TLQ+
Sbjct: 5   DQPIK--SYW-RWRKQDFFPEPTFQNLSTYTCALSQTYPRLKDRLLSRSSETNELVTLQK 61

Query: 70  ESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAF 129
           ES+ PL+KCLTWWDL WL FGSVVGSGIFVITGQEA+  +GPAI+LSY  SGLSALLS F
Sbjct: 62  ESENPLRKCLTWWDLMWLSFGSVVGSGIFVITGQEARV-SGPAILLSYAISGLSALLSVF 120

Query: 130 CYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDS 189
           CYTEFAVEIPVAGGSFS+LR+ELGDF+A++AAGNILLE VVGAAGL RSWSSY ASMI++
Sbjct: 121 CYTEFAVEIPVAGGSFSYLRIELGDFIAFLAAGNILLEGVVGAAGLGRSWSSYFASMINT 180

Query: 190 NNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFV 249
            NSD LR ++D F DGFNLLDP+AV++LLV N IAM+GT+R+S LNW+SS+V++C+IVF+
Sbjct: 181 KNSDFLRIRIDSFPDGFNLLDPIAVVVLLVANTIAMTGTKRTSTLNWLSSVVTACIIVFI 240

Query: 250 IIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLV 309
           I+VG VHGK++NL PF P G +GVFEAAAVVYWSYTGFDMVATMAEET+KPSRDIPIGLV
Sbjct: 241 IVVGLVHGKSSNLVPFFPSGPKGVFEAAAVVYWSYTGFDMVATMAEETEKPSRDIPIGLV 300

Query: 310 GSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSL 369
           GSM MIT VYCLMALALT+MVKYTEI+ +AAYS+AF QIGMNWAKYLVS+CALKGMTTSL
Sbjct: 301 GSMSMITVVYCLMALALTIMVKYTEINADAAYSVAFAQIGMNWAKYLVSICALKGMTTSL 360

Query: 370 LVGSLGQARYTTQIARAHMIPPWFAL 395
           LVGSLGQ RYTTQIAR+HMIPPWFAL
Sbjct: 361 LVGSLGQGRYTTQIARSHMIPPWFAL 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224061339|ref|XP_002300432.1| cationic amino acid transporter [Populus trichocarpa] gi|222847690|gb|EEE85237.1| cationic amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225423859|ref|XP_002278606.1| PREDICTED: uncharacterized amino acid permease YfnA-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297737874|emb|CBI27075.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449515788|ref|XP_004164930.1| PREDICTED: cationic amino acid transporter 8, vacuolar-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449439077|ref|XP_004137314.1| PREDICTED: cationic amino acid transporter 8, vacuolar-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356532335|ref|XP_003534729.1| PREDICTED: uncharacterized amino acid permease YfnA-like [Glycine max] Back     alignment and taxonomy information
>gi|297844646|ref|XP_002890204.1| hypothetical protein ARALYDRAFT_471910 [Arabidopsis lyrata subsp. lyrata] gi|297336046|gb|EFH66463.1| hypothetical protein ARALYDRAFT_471910 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15220035|ref|NP_173155.1| cationic amino acid transporter 8 [Arabidopsis thaliana] gi|75313454|sp|Q9SHH0.1|CAAT8_ARATH RecName: Full=Cationic amino acid transporter 8, vacuolar gi|5734765|gb|AAD50030.1|AC007651_25 Very similar to amino acid transporter [Arabidopsis thaliana] gi|18176204|gb|AAL60003.1| putative amino acid transporter protein [Arabidopsis thaliana] gi|21436167|gb|AAM51371.1| putative amino acid transporter protein [Arabidopsis thaliana] gi|332191423|gb|AEE29544.1| cationic amino acid transporter 8 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147860151|emb|CAN78727.1| hypothetical protein VITISV_020011 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
TAIR|locus:2020387 590 CAT8 "cationic amino acid tran 0.952 0.638 0.675 2.9e-135
TAIR|locus:2044682 569 CAT5 "AT2G34960" [Arabidopsis 0.944 0.657 0.570 8.2e-115
TAIR|locus:2127398 594 AAT1 "AT4G21120" [Arabidopsis 0.949 0.632 0.482 3.8e-94
TAIR|locus:2175488 583 CAT6 "AT5G04770" [Arabidopsis 0.914 0.620 0.391 8.2e-67
TAIR|locus:2075745 584 CAT7 "cationic amino acid tran 0.919 0.623 0.373 2e-65
DICTYBASE|DDB_G0279983 766 ctrB "solute carrier family 7 0.916 0.473 0.336 8e-53
TIGR_CMR|BA_0818 467 BA_0818 "amino acid permease f 0.818 0.693 0.353 5.8e-50
DICTYBASE|DDB_G0291227 562 ctrA "solute carrier family 7 0.871 0.613 0.316 5e-44
DICTYBASE|DDB_G0291201 546 ctrC "solute carrier family 7 0.800 0.580 0.307 1.7e-43
FB|FBgn0036984 669 CG13248 [Drosophila melanogast 0.757 0.448 0.332 3.5e-42
TAIR|locus:2020387 CAT8 "cationic amino acid transporter 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
 Identities = 256/379 (67%), Positives = 291/379 (76%)

Query:    17 SCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQ 76
             S W +W KQ FFPE SF++ ++YKSAL  T PRL +RL SRS+DA EL   ++ES+ P++
Sbjct:    24 SYW-RWRKQDFFPEFSFQSFSTYKSALSATCPRLADRLLSRSSDAYELDAARRESENPMR 82

Query:    77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVXXXXXXXXXXXXXXFCYTEFAV 136
             +CLTWWDL WL FGSVVGSG+FVITGQEA+  AGPA+V               CY EF V
Sbjct:    83 RCLTWWDLLWLSFGSVVGSGVFVITGQEARVGAGPAVVLSYAISGVSALLSVLCYAEFGV 142

Query:   137 EIPVAGGSFSFLRVELGDFVAYIAAGNIXXXXXXXXXXXXRSWSSYLASMIDSNNSDLLR 196
             EIPVAGGSFS+LRVELGDF+A+IAAGNI            RSWSSYLAS++  N+SD  R
Sbjct:   143 EIPVAGGSFSYLRVELGDFIAFIAAGNILLEAMVGAAGLGRSWSSYLASLV-KNDSDYFR 201

Query:   197 FKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWXXXXXXXXXXXXXXXXGFVH 256
              KVD FA GF+LLDPVAV +LLV NGIAM+GT+R+SWLN                 GF H
Sbjct:   202 IKVDSFAKGFDLLDPVAVAVLLVANGIAMTGTKRTSWLNLITSMVTVCIIVFIVVVGFTH 261

Query:   257 GKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMIT 316
              KT+NL PF PYG +GV ++AAVVYWSYTGFDMVA MAEET+KPSRDIPIGLVGSM MIT
Sbjct:   262 SKTSNLVPFFPYGAKGVVQSAAVVYWSYTGFDMVANMAEETEKPSRDIPIGLVGSMSMIT 321

Query:   317 AVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQ 376
              VYCLMALALTMMVKYTEID NAAYS+AF QIGM WAKYLV +CALKGMTTSLLVGSLGQ
Sbjct:   322 VVYCLMALALTMMVKYTEIDANAAYSVAFAQIGMKWAKYLVGICALKGMTTSLLVGSLGQ 381

Query:   377 ARYTTQIARAHMIPPWFAL 395
             ARYTTQIAR+HMIPPWFAL
Sbjct:   382 ARYTTQIARSHMIPPWFAL 400
GO:0003333 "amino acid transmembrane transport" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA
GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IGI
GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009741 "response to brassinosteroid stimulus" evidence=RCA
TAIR|locus:2044682 CAT5 "AT2G34960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127398 AAT1 "AT4G21120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175488 CAT6 "AT5G04770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075745 CAT7 "cationic amino acid transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279983 ctrB "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0818 BA_0818 "amino acid permease family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291227 ctrA "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291201 ctrC "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0036984 CG13248 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SHH0CAAT8_ARATHNo assigned EC number0.72040.99240.6661yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PtrCAT8
cationic amino acid transporter (577 aa)
(Populus trichocarpa)
Predicted Functional Partners:
GH3-8
GH3 family protein (587 aa)
      • 0.510
MYB102
hypothetical protein (118 aa)
      • 0.510

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
TIGR00906 557 TIGR00906, 2A0303, cationic amino acid transport p 1e-114
TIGR00909 429 TIGR00909, 2A0306, amino acid transporter 9e-60
COG0531 466 COG0531, PotE, Amino acid transporters [Amino acid 9e-46
pfam13520 425 pfam13520, AA_permease_2, Amino acid permease 4e-33
pfam00324 473 pfam00324, AA_permease, Amino acid permease 2e-17
TIGR00908 442 TIGR00908, 2A0305, ethanolamine permease 2e-17
PRK11357 445 PRK11357, frlA, putative fructoselysine transporte 3e-15
TIGR00911 501 TIGR00911, 2A0308, L-type amino acid transporter 5e-12
COG1113 462 COG1113, AnsP, Gamma-aminobutyrate permease and re 7e-11
TIGR00905 473 TIGR00905, 2A0302, transporter, basic amino acid/p 3e-10
PRK10644 445 PRK10644, PRK10644, arginine:agmatin antiporter; P 4e-08
PRK11387 471 PRK11387, PRK11387, S-methylmethionine transporter 3e-06
TIGR01773 452 TIGR01773, GABAperm, gamma-aminobutyrate permease 6e-06
PRK10238 456 PRK10238, PRK10238, aromatic amino acid transporte 6e-06
PRK10249 458 PRK10249, PRK10249, phenylalanine transporter; Pro 1e-05
PRK15049 499 PRK15049, PRK15049, L-asparagine permease; Provisi 1e-05
TIGR03810 468 TIGR03810, arg_ornith_anti, arginine-ornithine ant 5e-05
TIGR03813 474 TIGR03813, put_Glu_GABA_T, putative glutamate/gamm 6e-05
PRK11021 410 PRK11021, PRK11021, putative transporter; Provisio 9e-05
PRK10580 457 PRK10580, proY, putative proline-specific permease 1e-04
TIGR00913 478 TIGR00913, 2A0310, amino acid permease (yeast) 3e-04
TIGR03428 475 TIGR03428, ureacarb_perm, permease, urea carboxyla 4e-04
COG0833 541 COG0833, LysP, Amino acid transporters [Amino acid 4e-04
PRK10836 489 PRK10836, PRK10836, lysine transporter; Provisiona 0.002
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 0.003
PRK10197 446 PRK10197, PRK10197, gamma-aminobutyrate transporte 0.003
TIGR00907 482 TIGR00907, 2A0304, amino acid permease (GABA perme 0.003
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease Back     alignment and domain information 
 Score =  344 bits (883), Expect = e-114
 Identities = 131/341 (38%), Positives = 198/341 (58%), Gaps = 9/341 (2%)

Query: 63  ELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGL 122
           +++ L    +  +++CLT WDL  L  GS +G+GI+V+TG+ A+  +GPAIVLS+L SGL
Sbjct: 14  KIVDLDSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGL 73

Query: 123 SALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSY 182
           +A+LS FCY EF   +P AG ++ +  V +G+  A+I   N++LE V+G A +ARSWS+Y
Sbjct: 74  AAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAY 133

Query: 183 LASMIDSNNSDLLRFKVDCFADGFNL-LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIV 241
              +++       R       DG     D  AV ++L+   +   G + S+W+N I + +
Sbjct: 134 FDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAI 193

Query: 242 SSCVIVFVIIVGFVHGKTTNLDP--------FLPYGTEGVFEAAAVVYWSYTGFDMVATM 293
           +  V++FVII GF      N           F+PYG  GV   AA  ++++ GFD +AT 
Sbjct: 194 NILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATT 253

Query: 294 AEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWA 353
            EE K P R IPIG+V S+ +    Y LM+ ALT+M+ Y  +D +A + +AF  +G   A
Sbjct: 254 GEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPA 313

Query: 354 KYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFA 394
           KY+V+V AL GM+TSLL G     R    +AR  ++  W A
Sbjct: 314 KYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLA 354

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease Back     alignment and domain information
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional Back     alignment and domain information
>gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional Back     alignment and domain information
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease Back     alignment and domain information
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional Back     alignment and domain information
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional Back     alignment and domain information
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional Back     alignment and domain information
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional Back     alignment and domain information
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) Back     alignment and domain information
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|182767 PRK10836, PRK10836, lysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information
>gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 396
TIGR00906 557 2A0303 cationic amino acid transport permease. 100.0
PRK15049 499 L-asparagine permease; Provisional 100.0
PRK10249 458 phenylalanine transporter; Provisional 100.0
PRK11387 471 S-methylmethionine transporter; Provisional 100.0
PRK10238 456 aromatic amino acid transporter; Provisional 100.0
PRK10746 461 putative transport protein YifK; Provisional 100.0
TIGR01773 452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
PRK10644 445 arginine:agmatin antiporter; Provisional 100.0
PRK10655 438 potE putrescine transporter; Provisional 100.0
PRK10435 435 cadB lysine/cadaverine antiporter; Provisional 100.0
PRK10580 457 proY putative proline-specific permease; Provision 100.0
PRK11049 469 D-alanine/D-serine/glycine permease; Provisional 100.0
COG0833 541 LysP Amino acid transporters [Amino acid transport 100.0
KOG1286 554 consensus Amino acid transporters [Amino acid tran 100.0
PRK11357 445 frlA putative fructoselysine transporter; Provisio 100.0
TIGR00909 429 2A0306 amino acid transporter. 100.0
PRK10836 489 lysine transporter; Provisional 100.0
PRK11021 410 putative transporter; Provisional 100.0
TIGR00905 473 2A0302 transporter, basic amino acid/polyamine ant 100.0
TIGR00911 501 2A0308 L-type amino acid transporter. 100.0
COG1113 462 AnsP Gamma-aminobutyrate permease and related perm 100.0
TIGR00908 442 2A0305 ethanolamine permease. The three genes used 100.0
TIGR00913 478 2A0310 amino acid permease (yeast). 100.0
TIGR03428 475 ureacarb_perm permease, urea carboxylase system. A 100.0
PRK10197 446 gamma-aminobutyrate transporter; Provisional 100.0
KOG1289 550 consensus Amino acid transporters [Amino acid tran 100.0
KOG1287 479 consensus Amino acid transporters [Amino acid tran 100.0
TIGR03810 468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
TIGR00907 482 2A0304 amino acid permease (GABA permease). 100.0
PF13520 426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
COG0531 466 PotE Amino acid transporters [Amino acid transport 100.0
PF00324 478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
TIGR03813 474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
PRK15238 496 inner membrane transporter YjeM; Provisional 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.94
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.93
PHA02764 399 hypothetical protein; Provisional 99.85
TIGR00814397 stp serine transporter. The HAAAP family includes 99.83
PF03845320 Spore_permease: Spore germination protein; InterPr 99.82
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.79
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.79
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.73
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.73
PRK15132403 tyrosine transporter TyrP; Provisional 99.7
PRK10483414 tryptophan permease; Provisional 99.7
PRK09664415 tryptophan permease TnaB; Provisional 99.69
PRK13629443 threonine/serine transporter TdcC; Provisional 99.69
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 99.67
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.67
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 99.47
KOG1303437 consensus Amino acid transporters [Amino acid tran 99.38
TIGR00835425 agcS amino acid carrier protein. Members of the AG 99.37
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 99.36
PLN03074 473 auxin influx permease; Provisional 99.27
KOG1304449 consensus Amino acid transporters [Amino acid tran 99.22
PTZ00206467 amino acid transporter; Provisional 99.2
COG3949349 Uncharacterized membrane protein [Function unknown 99.01
PRK11375 484 allantoin permease; Provisional 98.82
PRK09442 483 panF sodium/panthothenate symporter; Provisional 98.63
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 98.62
TIGR00813407 sss transporter, SSS family. have different number 98.61
TIGR02119 471 panF sodium/pantothenate symporter. Pantothenate ( 98.57
TIGR02121 487 Na_Pro_sym sodium/proline symporter. This family c 98.44
PF05525 427 Branch_AA_trans: Branched-chain amino acid transpo 98.42
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.42
COG1457 442 CodB Purine-cytosine permease and related proteins 98.39
PRK11017404 codB cytosine permease; Provisional 98.35
TIGR00800 442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.34
COG0591 493 PutP Na+/proline symporter [Amino acid transport a 98.29
PRK15419 502 proline:sodium symporter PutP; Provisional 98.26
COG1953 497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.23
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 98.19
PRK10484 523 putative transporter; Provisional 98.19
PRK12488 549 acetate permease; Provisional 98.19
COG0733439 Na+-dependent transporters of the SNF family [Gene 98.15
PRK09395 551 actP acetate permease; Provisional 98.15
PF01566358 Nramp: Natural resistance-associated macrophage pr 98.14
PRK15433 439 branched-chain amino acid transport system 2 carri 98.13
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 98.02
PRK00701439 manganese transport protein MntH; Reviewed 97.97
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.94
PF02133 440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.85
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 97.85
COG1114 431 BrnQ Branched-chain amino acid permeases [Amino ac 97.77
KOG1305411 consensus Amino acid transporter protein [Amino ac 97.71
COG1914 416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.31
COG1292 537 BetT Choline-glycine betaine transporter [Cell env 96.94
PRK09950 506 putative transporter; Provisional 96.91
KOG4303524 consensus Vesicular inhibitory amino acid transpor 96.81
PLN00151 852 potassium transporter; Provisional 96.7
KOG2466 572 consensus Uridine permease/thiamine transporter/al 96.51
PRK03356 504 L-carnitine/gamma-butyrobetaine antiporter; Provis 96.13
PRK09928 679 choline transport protein BetT; Provisional 96.08
COG4145 473 PanF Na+/panthothenate symporter [Coenzyme metabol 95.64
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 95.59
TIGR00842453 bcct choline/carnitine/betaine transport. properti 95.42
COG4147 529 DhlC Predicted symporter [General function predict 95.4
KOG3659 629 consensus Sodium-neurotransmitter symporter [Signa 95.33
PLN00149 779 potassium transporter; Provisional 95.04
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 94.97
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 94.5
PLN00150 779 potassium ion transporter family protein; Provisio 94.12
PF02705 534 K_trans: K+ potassium transporter; InterPro: IPR00 93.93
PLN00148 785 potassium transporter; Provisional 92.42
PRK10745 622 trkD potassium transport protein Kup; Provisional 91.64
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 89.49
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 88.7
COG1966 575 CstA Carbon starvation protein, predicted membrane 87.54
KOG1289550 consensus Amino acid transporters [Amino acid tran 84.69
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information 
Probab=100.00  E-value=5.6e-47  Score=373.77  Aligned_cols=324  Identities=40%  Similarity=0.703  Sum_probs=284.4

Q ss_pred             CcccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHH
Q 016040           72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE  151 (396)
Q Consensus        72 ~~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~  151 (396)
                      +++++|+++.+|+++++++.++|+|+|..++.+....+||+.+++|+++++.+++.+++|+|+++++|++||.|.|+++.
T Consensus        23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~  102 (557)
T TIGR00906        23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVT  102 (557)
T ss_pred             ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHH
Confidence            44689999999999999999999999999998876558999999999999999999999999999999999999999999


Q ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccccccc--CCCCCchhHHHHHHHHHHHHHHhhhhh
Q 016040          152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCF--ADGFNLLDPVAVLILLVCNGIAMSGTR  229 (396)
Q Consensus       152 ~g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~g~k  229 (396)
                      +|+.+|+++||.+++.|....+..+...+.|+..++. .....+....-..  +.......+++++++++++++|++|+|
T Consensus       103 ~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~-~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik  181 (557)
T TIGR00906       103 VGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLN-KQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVK  181 (557)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchh
Confidence            9999999999999999999999999999999888765 2111111000000  000012346677788888999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC--------CCCCCCHHHHHHHHHHHHHHhhchhHHhhhhhhhcCCC
Q 016040          230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD--------PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPS  301 (396)
Q Consensus       230 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~  301 (396)
                      ..+|++.+++.++++.++++++.++.+.+.+|+.        ++.|.++.+++.++..++|+|.|+|.+++++||+|||+
T Consensus       182 ~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~  261 (557)
T TIGR00906       182 ESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ  261 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc
Confidence            9999999999999999998888888776666654        56677888899999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 016040          302 RDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT  381 (396)
Q Consensus       302 r~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~  381 (396)
                      |++||+++.++.+++++|++..++.....|+++++.++|+..+++..+.++...++.+..+++.+++.++.+++.+|+++
T Consensus       262 r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~  341 (557)
T TIGR00906       262 RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIY  341 (557)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888888999999888888999999999999999999999999999999


Q ss_pred             HHHhcCCCchhhhcC
Q 016040          382 QIARAHMIPPWFALA  396 (396)
Q Consensus       382 ~~a~dg~lP~~f~~~  396 (396)
                      +|||||.+|++|+|+
T Consensus       342 amarDGlLP~~fakv  356 (557)
T TIGR00906       342 AMARDGLLFKWLAQI  356 (557)
T ss_pred             HHHcCCCccHHHhcc
Confidence            999999999999985

>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
3gi8_C 444 Crystal Structure Of Apct K158a Transporter Bound T 8e-05
3gi9_C 444 Crystal Structure Of Apct Transporter Bound To 7f11 8e-05
3lrb_A 445 Structure Of E. Coli Adic Length = 445 1e-04
3ob6_A 445 Structure Of Adic(N101a) In The Open-To-Out Arg+ Bo 1e-04
3l1l_A 445 Structure Of Arg-Bound Escherichia Coli Adic Length 2e-04
3ncy_A 445 X-Ray Crystal Structure Of An Arginine Agmatine Ant 2e-04
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure 
Iteration: 1

 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 68/339 (20%), Positives = 127/339 (37%), Gaps = 52/339 (15%)
Query: 76  QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVXXXXXXXXXXXXXXFCYTEFA 135
            K L+ W+   +  G ++G+ IF I G  AK  AG  +               + YT+  
Sbjct: 5   NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKI-AGRNLPETFILSGIYALLVAYSYTKLG 63
Query: 136 VEIPVAGGSFSFLRVELGDFVAYIAAGNIXXXXXXXXXXXXRSWSSYLASMIDSNNSDLL 195
            +I    G  +F+   +GD        NI              W SY+ S          
Sbjct: 64  AKIVSNAGPIAFIHKAIGD--------NIITGALSILL-----WMSYVIS---------- 100
Query: 196 RFKVDCFADGF------------NLLDPVAVLILLVCNGIAMS--GTRRSSWLNWXXXXX 241
              +  FA GF            N  +     I +V    A++  G++      +     
Sbjct: 101 ---IALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLV 157
Query: 242 XXXXXXXXXXXGFVHGKTTNLDPFL-PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKP 300
                      G +    + + P L P    G+  A+A+ + SY GF ++   +E  + P
Sbjct: 158 ALLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENP 217
Query: 301 SRDIPIGLVGSMCMITAVYCLMA------LALTMMVKYTEIDMNAAYSIAFRQIGMNWAK 354
            +++P  +  S+ ++  VY  +A      L +  ++K +E     A ++A +    N   
Sbjct: 218 KKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASE----NALAVAAKPFLGNLGF 273
Query: 355 YLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWF 393
            L+S+ AL  +++++     G A     +A+   +P +F
Sbjct: 274 LLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFF 312
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic Length = 445 Back     alignment and structure
>pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound Conformation Length = 445 Back     alignment and structure
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic Length = 445 Back     alignment and structure
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter (Adic) In Complex With A Fab Fragment Length = 445 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
3gia_A 444 Uncharacterized protein MJ0609; membrane protein, 1e-92
3l1l_A 445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 3e-63
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 4e-56
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
 Score =  284 bits (729), Expect = 1e-92
 Identities = 64/324 (19%), Positives = 141/324 (43%), Gaps = 18/324 (5%)

Query: 75  LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEF 134
             K L+ W+   +  G ++G+ IF I G  AK  AG  +  +++ SG+ ALL A+ YT+ 
Sbjct: 4   KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAK-IAGRNLPETFILSGIYALLVAYSYTKL 62

Query: 135 AVEIPVAGGSFSFLRVELGD-FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSD 193
             +I    G  +F+   +GD  +    +  + +  V+  A  A+ ++ Y   +I++  + 
Sbjct: 63  GAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINT 122

Query: 194 LLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVG 253
                          +    + I+     +   G++      +   +V   ++   I  G
Sbjct: 123 FN-------------IAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAG 169

Query: 254 FVHGKTTNLDP-FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSM 312
            +    + + P   P    G+  A+A+ + SY GF ++   +E  + P +++P  +  S+
Sbjct: 170 LITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISI 229

Query: 313 CMITAVYCLMALALTMMVKYTEIDMNAAYSI--AFRQIGMNWAKYLVSVCALKGMTTSLL 370
            ++  VY  +A++    +   E+   +  ++  A +    N    L+S+ AL  +++++ 
Sbjct: 230 LIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMN 289

Query: 371 VGSLGQARYTTQIARAHMIPPWFA 394
               G A     +A+   +P +F 
Sbjct: 290 ATIYGGANVAYSLAKDGELPEFFE 313
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
3l1l_A 445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
3gia_A 444 Uncharacterized protein MJ0609; membrane protein, 100.0
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
2jln_A 501 MHP1; hydantoin, transporter, membrane protein, nu 98.89
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 98.34
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.2
2a65_A 519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.43
4ain_A 539 Glycine betaine transporter BETP; membrane protein 95.46
2wsw_A 509 BCCT family betaine/carnitine/choline transporter; 94.81
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=3.2e-42  Score=334.21  Aligned_cols=309  Identities=20%  Similarity=0.312  Sum_probs=267.9

Q ss_pred             cccccccchhHHHHHhhhccccchhhhccHHhHhhccChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHh
Q 016040           73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL  152 (396)
Q Consensus        73 ~~~~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~il~~~~~~~~~~~~~el~~~~p~~Gg~y~~~~~~~  152 (396)
                      ++.||++++++.+++.++.++|+|++..++.. .. +|+.++++|++++++.++.+++++|+++++|++||.|+|+++.+
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~-~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~   81 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-AS-TGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF   81 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HH-HCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HH-hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence            34689999999999999999999999998874 34 67888999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccccCCCCCchhHHHHHHHHHHHHHHhhhhhhHH
Q 016040          153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS  232 (396)
Q Consensus       153 g~~~g~~~g~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~  232 (396)
                      ||.+|++.||.+++.+....+.++..+++++..+++ ..           . ++....++++++++++.++|++|+|..+
T Consensus        82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------~-~~~~~~~~~~~~~~~~~~in~~g~~~~~  148 (445)
T 3l1l_A           82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFP-IL-----------K-DPWVLTITCVVVLWIFVLLNIVGPKMIT  148 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCG-GG-----------G-SHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc-cc-----------c-ccHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence            999999999999999999988888888888876554 11           0 1122457888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccCCC-CCCCCC---HHHHHHHHHHHHHHhhchhHHhhhhhhhcCCCCChhHHH
Q 016040          233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLD-PFLPYG---TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGL  308 (396)
Q Consensus       233 ~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~f~G~e~~~~~~~E~k~p~r~~p~a~  308 (396)
                      +++.+++.++++.++++++.++...+++++. ++.+.+   +.+++.++...+|+|.|+|.+++++||+|||+|++||++
T Consensus       149 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~  228 (445)
T 3l1l_A          149 RVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIAT  228 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHH
Confidence            9999999999999988888887766655543 333333   567888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccc-cCchHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHhcC
Q 016040          309 VGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH  387 (396)
Q Consensus       309 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg  387 (396)
                      ..+..+++++|++..++.....|.+++. .++|+.+++++.+++++..++.+..+++.+++.++.+++.+|++++|||||
T Consensus       229 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg  308 (445)
T 3l1l_A          229 IGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG  308 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999988764 457999999988889999999999999999999999999999999999999


Q ss_pred             CCchhhhcC
Q 016040          388 MIPPWFALA  396 (396)
Q Consensus       388 ~lP~~f~~~  396 (396)
                      .+|++|+|+
T Consensus       309 ~lP~~~~~~  317 (445)
T 3l1l_A          309 LFPPIFARV  317 (445)
T ss_dssp             SSCGGGGCC
T ss_pred             CCcHHHHhc
Confidence            999999985
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 94.66
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.66  E-value=1.5  Score=39.82  Aligned_cols=44  Identities=18%  Similarity=0.322  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHhh-chhHHhhhhhhhcCCCCChhHHHHHHHHHH
Q 016040          271 EGVFEAAAVVYWSYT-GFDMVATMAEETKKPSRDIPIGLVGSMCMI  315 (396)
Q Consensus       271 ~~~~~~~~~~~~~f~-G~e~~~~~~~E~k~p~r~~p~a~~~~~~~~  315 (396)
                      .-+..+...++|++. |+.....++.-.|+ +.|..|-.+......
T Consensus       238 ~vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~-~~n~~rda~~v~~~~  282 (509)
T d2a65a1         238 GVWIAAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLN  282 (509)
T ss_dssp             HHHHHHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccCCceeeehhhccc-hhhhcccceEEEecc
Confidence            446778888999984 88888888887776 455666554444443