Citrus Sinensis ID: 016052

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
MASIRRTLSPAYHDRQYQNGANSPFSPSHHKLFTSGKYTSSLLAVNLRRKAWRKSLYRCLVFFALGLLLGMTPFGHVTTDIENRDVFFEIKPPHVNVQLDSDNRSDRMSKRDEILLDAVSLGVDFRNEINTVESYRYDFEPRKQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSRILNWHLHLDAHNLPYPRGWLLPRNLEVVLPVE
ccccccccccccccccccccccccccccccccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHccEEcccccEEEEccccEEEEEcEEEcccEEEEEEccccccccccccccccEEEEEEccccccccccccccccccccccccccccHHHHHHHHccccccEEEccccccEEEEEEccccccccccccccccccccEEEcccc
cccccccccccccccccccccccccccccccccccccccccHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEccccEcccccccccccccccccHHHHccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHccccEEEEEcccccccccccHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHccEEcEEEEEEEcccccEEEEEcEEEcccEEEEEEccccccccccccccEcHHEEEHHHHcccccccccccHHHHccccccccccHHHHHHHHHccHHHcccccccccEEEEEEEcccccccccccccEccccccEEEEcc
masirrtlspayhdrqyqnganspfspshhklftsgkyTSSLLAVNLRRKAWRKSLYRCLVFFALGLLlgmtpfghvttdienrdvffeikpphvnvqldsdnrsdrmskRDEILLDAVSLGvdfrneintvesyrydfeprkqlivitPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQknsssvkdrgvHQRNLALEHIERHRLDGivyfadddniytmDLFDSLREISRFGTWPVAMLAQSKnkaiiegpvcngsqvigwhtneksKRLRRfhvdmsgfafnstilwdpkrwqrpfsnsirQLDTVKEGFQETTFIEQVVedesqmegtppscsrilnwhlhldahnlpyprgwllprnlevvlpve
masirrtlspayhdrqyqnGANSPFSPSHHKLFTSGKYTSSLLAVNLRRKAWRKSLYRCLVFFALGLLLGMTPFGHVTTDIENRDVFFEIKpphvnvqldsdnrsdrmSKRDEILLdavslgvdfrneintvesyrydfeprkQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSqknsssvkdrgvHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFafnstilwdpkrwQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSRILNWHLHLDAHNLPYPRGWLLPRNLEVVLPVE
MASIRRTLSPAYHDRQYQNGANSPFSPSHHKLFTSGKYTSSLLAVNLRRKAWRKSLYRCLVFFALGLLLGMTPFGHVTTDIENRDVFFEIKPPHVNVQLDSDNRSDRMSKRDEILLDAVSLGVDFRNEINTVESYRYDFEPRKQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSRILNWHLHLDAHNLPYPRGWLLPRNLEVVLPVE
*******************************LFTSGKYTSSLLAVNLRRKAWRKSLYRCLVFFALGLLLGMTPFGHVTTDIENRDVFFEIKPPHVNV***************EILLDAVSLGVDFRNEINTVESYRYDFEPRKQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLV*************HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVV************CSRILNWHLHLDAHNLPYPRGWLLPRNLEVVL***
**************************************************AWRKSLYRCLVFFALGLLLGMTPFGHVTTDIENR*********************************************************RKQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSRILNWHLHLDAHNLPYPRGWLLPRNLEVVLPV*
MASIRRTLSPAYHDRQYQNGANSPFSPSHHKLFTSGKYTSSLLAVNLRRKAWRKSLYRCLVFFALGLLLGMTPFGHVTTDIENRDVFFEIKPPHVNVQLDSDNRSDRMSKRDEILLDAVSLGVDFRNEINTVESYRYDFEPRKQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLV*************HQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVV***********SCSRILNWHLHLDAHNLPYPRGWLLPRNLEVVLPVE
***********************************************RRKAWRKSLYRCLVFFALGLLLGMTPFGHVTT***********************N*SDRMSKRDEILL***SL*VDFRNEINTVESYRYDFEPRKQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSRILNWHLHLDAHNLPYPRGWLLPRNLEVVLPVE
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASIRRTLSPAYHDRQYQNGANSPFSPSHHKLFTSGKYTSSLLAVNLRRKAWRKSLYRCLVFFALGLLLGMTPFGHVTTDIENRDVFFEIKPPHVNVQLDSDNRSDRMSKRDEILLDAVSLGVDFRNEINTVESYRYDFEPRKQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSRILNWHLHLDAHNLPYPRGWLLPRNLEVVLPVE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query396 2.2.26 [Sep-21-2011]
Q9SXC4394 Probable beta-1,4-xylosyl yes no 0.949 0.954 0.640 1e-149
Q8S626351 Probable glucuronosyltran yes no 0.648 0.732 0.568 4e-85
Q5QM25446 Probable glucuronosyltran no no 0.911 0.809 0.401 1e-77
Q6AT32451 Probable glucuronosyltran no no 0.906 0.796 0.388 6e-73
Q7XTB2381 Probable glucuronosyltran no no 0.641 0.666 0.488 8e-71
Q9ZQC6351 Probable beta-1,4-xylosyl no no 0.792 0.894 0.354 8e-54
Q10N05415 Probable glucuronosyltran no no 0.550 0.525 0.412 2e-46
Q75L84371 Probable glucuronosyltran no no 0.431 0.460 0.402 2e-39
Q6Z3Y6338 Probable glucuronosyltran no no 0.593 0.695 0.351 2e-33
Q9FH90492 Probable beta-1,4-xylosyl no no 0.646 0.520 0.314 2e-29
>sp|Q9SXC4|IRX9H_ARATH Probable beta-1,4-xylosyltransferase IRX9H OS=Arabidopsis thaliana GN=IRX9H PE=1 SV=2 Back     alignment and function desciption
 Score =  529 bits (1362), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 265/414 (64%), Positives = 317/414 (76%), Gaps = 38/414 (9%)

Query: 1   MASIRRTLSPAYHDRQYQNGANSPFSPSHHKLFTSG------------KYTSSLLAV--- 45
           MASIRRTLSP YHDR ++NG +       HK FT G             Y + LL V   
Sbjct: 1   MASIRRTLSPMYHDRSHENGGS-------HKGFTIGGSSSKHNSSQFLSYLTKLLGVTSD 53

Query: 46  --NLRRKAWRKSLYRCLVFFALGLLLGMTPFGHVTTDIENRDVF-FEIKPPHVNVQLDSD 102
             + RR  WR+  Y+ LVFF LG +LG+TPFG +  D+   D F FEIK P+V  +L+  
Sbjct: 54  PKSSRRGPWRRPFYQFLVFFLLGFVLGLTPFGKME-DVNGSDRFSFEIKQPYVEERLE-- 110

Query: 103 NRSDRMSKRDEILLDAVSLGVDFRNEINTVESYRYDFEPRKQLIVITPTYNRAMQAYFLN 162
           NR     KR+E  +DAVS   +  N    V     +F P+K LIV+TPTYNRAMQAY+LN
Sbjct: 111 NR-----KREEAAVDAVSFVAETENGKKEV-----NFVPKKLLIVVTPTYNRAMQAYYLN 160

Query: 163 RLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNL 222
           R+AQ LRLV+ P+LWIVVE N AS+ET+E+LRKTGVMYR LV ++N +S+KDRGVHQRN 
Sbjct: 161 RVAQTLRLVESPVLWIVVEGNVASFETSEILRKTGVMYRHLVCKRNMTSIKDRGVHQRNT 220

Query: 223 ALEHIERHRLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCN 282
           ALEHIE H+LDGIVYFADDDNIY+++LF SLR+ISRFGTWPVAMLAQSKNKAI+EGPVCN
Sbjct: 221 ALEHIELHKLDGIVYFADDDNIYSLELFQSLRQISRFGTWPVAMLAQSKNKAILEGPVCN 280

Query: 283 GSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLDTVKEGFQET 342
           GSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRW+RPFS+  RQLDTVKEGFQET
Sbjct: 281 GSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPFSHPTRQLDTVKEGFQET 340

Query: 343 TFIEQVVEDESQMEGTPPSCSRILNWHLHLDAHNLPYPRGWLLPRNLEVVLPVE 396
           +FIEQVV DES+MEG PP+CS ILNWHLHLDA ++PYP+GW + +NL+ ++ ++
Sbjct: 341 SFIEQVVADESEMEGVPPACSSILNWHLHLDALDVPYPQGWAIQKNLQALITMK 394
Involved in the synthesis of the hemicellulose glucuronoxylan, a major component of secondary cell walls. Probably involved in the elongation of glucuronoxylan xylosyl backbone.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: -
>sp|Q8S626|GT102_ORYSJ Probable glucuronosyltransferase Os10g0205300 OS=Oryza sativa subsp. japonica GN=Os10g0205300 PE=2 SV=1 Back     alignment and function description
>sp|Q5QM25|GT12_ORYSJ Probable glucuronosyltransferase Os01g0675500 OS=Oryza sativa subsp. japonica GN=Os01g0675500 PE=2 SV=1 Back     alignment and function description
>sp|Q6AT32|GT52_ORYSJ Probable glucuronosyltransferase Os05g0559600 OS=Oryza sativa subsp. japonica GN=Os05g0559600 PE=2 SV=1 Back     alignment and function description
>sp|Q7XTB2|GT41_ORYSJ Probable glucuronosyltransferase Os04g0103100 OS=Oryza sativa subsp. japonica GN=Os04g0103100 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZQC6|IRX9_ARATH Probable beta-1,4-xylosyltransferase IRX9 OS=Arabidopsis thaliana GN=IRX9 PE=2 SV=1 Back     alignment and function description
>sp|Q10N05|GT32_ORYSJ Probable glucuronosyltransferase Os03g0287800 OS=Oryza sativa subsp. japonica GN=Os03g0287800 PE=3 SV=1 Back     alignment and function description
>sp|Q75L84|GT51_ORYSJ Probable glucuronosyltransferase Os05g0123100 OS=Oryza sativa subsp. japonica GN=Os05g0123100 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z3Y6|GT71_ORYSJ Probable glucuronosyltransferase Os07g0694400 OS=Oryza sativa subsp. japonica GN=Os07g0694400 PE=2 SV=1 Back     alignment and function description
>sp|Q9FH90|IX14H_ARATH Probable beta-1,4-xylosyltransferase IRX14H OS=Arabidopsis thaliana GN=IRX14H PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
224063335395 glycosyl transferase [Populus trichocarp 0.967 0.969 0.715 1e-164
255537872405 beta-1,3-glucuronyltransferase, putative 0.964 0.943 0.680 1e-159
225458982405 PREDICTED: probable beta-1,4-xylosyltran 0.977 0.955 0.681 1e-154
449516061407 PREDICTED: LOW QUALITY PROTEIN: probable 0.979 0.953 0.655 1e-154
449436916415 PREDICTED: probable beta-1,4-xylosyltran 0.979 0.934 0.645 1e-152
297851192395 glycosyl transferase family 43 protein [ 0.952 0.954 0.635 1e-148
42571663394 nucleotide-diphospho-sugar transferase d 0.949 0.954 0.640 1e-147
302142117381 unnamed protein product [Vitis vinifera] 0.916 0.952 0.664 1e-146
63087714394 beta-1,3-glucuronosyltransferase [Gossyp 0.959 0.964 0.665 1e-146
356515667414 PREDICTED: probable beta-1,4-xylosyltran 0.987 0.944 0.646 1e-146
>gi|224063335|ref|XP_002301102.1| glycosyl transferase [Populus trichocarpa] gi|222842828|gb|EEE80375.1| glycosyl transferase [Populus trichocarpa] gi|333951819|gb|AEG25427.1| glycosyltransferase GT43E [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 292/408 (71%), Positives = 322/408 (78%), Gaps = 25/408 (6%)

Query: 1   MASIRRTLSPAYHDRQYQNGANSPFSPSHHKLFT----SGKYTS-------SLLAVNLRR 49
           MASIRRTLS  Y DR YQNG  S      HKLF+    SGKY+S       +  +V LRR
Sbjct: 1   MASIRRTLSQVYQDRSYQNGVASA---QAHKLFSTNNNSGKYSSLTPTSAVAAASVYLRR 57

Query: 50  KAWRKSLYRCLVFFALGLLLGMTPFGHVTTDIENRDVFFEIKPPHVNVQLDSDNRSDRMS 109
           K +R+S YRC +FF LGLLLG+ PFG V  DI   D  FE+KPPHVNVQLD+        
Sbjct: 58  KGFRRSFYRCTIFFILGLLLGIFPFGQVDNDINKHDFSFEMKPPHVNVQLDT-------- 109

Query: 110 KRDEILLDAVSLGVDFRNEINTVESYRYDFEPRKQLIVITPTYNRAMQAYFLNRLAQVLR 169
            +D   L AVSLGV+ +         R+D+  RKQ+IVITPTYNRA+QAYFLNRL QVLR
Sbjct: 110 -KDNFALAAVSLGVE-KTTPQLDRFSRFDYVERKQVIVITPTYNRALQAYFLNRLGQVLR 167

Query: 170 LVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVS-QKNSSSVKDRGVHQRNLALEHIE 228
           LVQPPLLWIVVE  +AS ETAE+LRKTGVMYR LV   KN+++VKDRGVHQRN  LEHIE
Sbjct: 168 LVQPPLLWIVVEMTSASAETAEILRKTGVMYRHLVCVNKNNTNVKDRGVHQRNAGLEHIE 227

Query: 229 RHRLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIG 288
           RHRLDGIVYFADDDN+Y++ LF+SLR IS FGTWPVAMLAQSKNKAI+EGPVCN SQVIG
Sbjct: 228 RHRLDGIVYFADDDNVYSLQLFESLRNISHFGTWPVAMLAQSKNKAIVEGPVCNASQVIG 287

Query: 289 WHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQV 348
           WHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRW RPFSN IRQLDTVKEGFQETTFIEQV
Sbjct: 288 WHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWNRPFSNPIRQLDTVKEGFQETTFIEQV 347

Query: 349 VEDESQMEGTPPSCSRILNWHLHLDAHNLPYPRGWLLPRNLEVVLPVE 396
           VEDESQME  PPSCSRILNWHLHLDAH L YPRGWLL +NLEVV P++
Sbjct: 348 VEDESQMESVPPSCSRILNWHLHLDAHGLVYPRGWLLQKNLEVVQPIK 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537872|ref|XP_002510001.1| beta-1,3-glucuronyltransferase, putative [Ricinus communis] gi|223550702|gb|EEF52188.1| beta-1,3-glucuronyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225458982|ref|XP_002283625.1| PREDICTED: probable beta-1,4-xylosyltransferase IRX9H-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449516061|ref|XP_004165066.1| PREDICTED: LOW QUALITY PROTEIN: probable beta-1,4-xylosyltransferase IRX9H-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449436916|ref|XP_004136238.1| PREDICTED: probable beta-1,4-xylosyltransferase IRX9H-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297851192|ref|XP_002893477.1| glycosyl transferase family 43 protein [Arabidopsis lyrata subsp. lyrata] gi|297339319|gb|EFH69736.1| glycosyl transferase family 43 protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42571663|ref|NP_973922.1| nucleotide-diphospho-sugar transferase domain-containing protein [Arabidopsis thaliana] gi|79353985|ref|NP_564290.2| nucleotide-diphospho-sugar transferase domain-containing protein [Arabidopsis thaliana] gi|332319791|sp|Q9SXC4.2|IRX9H_ARATH RecName: Full=Probable beta-1,4-xylosyltransferase IRX9H; AltName: Full=Protein IRREGULAR XYLEM 9 homolog; AltName: Full=Xylan xylosyltransferase IRX9H gi|332192731|gb|AEE30852.1| nucleotide-diphospho-sugar transferase domain-containing protein [Arabidopsis thaliana] gi|332192732|gb|AEE30853.1| nucleotide-diphospho-sugar transferase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|302142117|emb|CBI19320.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|63087714|emb|CAI93172.1| beta-1,3-glucuronosyltransferase [Gossypium raimondii] Back     alignment and taxonomy information
>gi|356515667|ref|XP_003526520.1| PREDICTED: probable beta-1,4-xylosyltransferase IRX9H-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
TAIR|locus:2196899394 IRX9-L "AT1G27600" [Arabidopsi 0.967 0.972 0.648 6.7e-136
TAIR|locus:2061748351 IRX9 "IRREGULAR XYLEM 9" [Arab 0.792 0.894 0.354 7.2e-52
ZFIN|ZDB-GENE-040801-191316 b3gat2 "beta-1,3-glucuronyltra 0.547 0.686 0.352 1.3e-29
FB|FBgn0036144479 GlcAT-P "GlcAT-P" [Drosophila 0.525 0.434 0.323 4e-27
UNIPROTKB|F1S6C4347 B3GAT1 "Uncharacterized protei 0.525 0.599 0.376 4.5e-27
RGD|70880334 B3gat1 "beta-1,3-glucuronyltra 0.525 0.622 0.372 7.3e-27
UNIPROTKB|E2R9E8336 B3GAT1 "Galactosylgalactosylxy 0.525 0.619 0.372 9.4e-27
UNIPROTKB|F1PDW1361 B3GAT1 "Galactosylgalactosylxy 0.525 0.576 0.372 9.4e-27
UNIPROTKB|Q5CB03335 B3GAT1 "Galactosylgalactosylxy 0.525 0.620 0.372 9.4e-27
UNIPROTKB|F5H0S0347 B3GAT1 "Galactosylgalactosylxy 0.525 0.599 0.372 9.4e-27
TAIR|locus:2196899 IRX9-L "AT1G27600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1331 (473.6 bits), Expect = 6.7e-136, P = 6.7e-136
 Identities = 264/407 (64%), Positives = 317/407 (77%)

Query:     1 MASIRRTLSPAYHDRQYQNG-ANSPF----SPSHHKLFTSGKYTSSLLAV-----NLRRK 50
             MASIRRTLSP YHDR ++NG ++  F    S S H       Y + LL V     + RR 
Sbjct:     1 MASIRRTLSPMYHDRSHENGGSHKGFTIGGSSSKHNSSQFLSYLTKLLGVTSDPKSSRRG 60

Query:    51 AWRKSLYRCLVFFALGLLLGMTPFGHVTTDIENRDVF-FEIKPPHVNVQLDSDNRSDRMS 109
              WR+  Y+ LVFF LG +LG+TPFG +  D+   D F FEIK P+V  +L+  NR     
Sbjct:    61 PWRRPFYQFLVFFLLGFVLGLTPFGKME-DVNGSDRFSFEIKQPYVEERLE--NR----- 112

Query:   110 KRDEILLDAVSLGVDFRNEINTVESYRYDFEPRKQLIVITPTYNRAMQAYFLNRLAQVLR 169
             KR+E  +DAVS   +  N    V     +F P+K LIV+TPTYNRAMQAY+LNR+AQ LR
Sbjct:   113 KREEAAVDAVSFVAETENGKKEV-----NFVPKKLLIVVTPTYNRAMQAYYLNRVAQTLR 167

Query:   170 LVQPPLLWIVVEENAASYETAELLRKTGVMYRQLVSQKNSSSVKDRGVHQRNLALEHIER 229
             LV+ P+LWIVVE N AS+ET+E+LRKTGVMYR LV ++N +S+KDRGVHQRN ALEHIE 
Sbjct:   168 LVESPVLWIVVEGNVASFETSEILRKTGVMYRHLVCKRNMTSIKDRGVHQRNTALEHIEL 227

Query:   230 HRLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGW 289
             H+LDGIVYFADDDNIY+++LF SLR+ISRFGTWPVAMLAQSKNKAI+EGPVCNGSQVIGW
Sbjct:   228 HKLDGIVYFADDDNIYSLELFQSLRQISRFGTWPVAMLAQSKNKAILEGPVCNGSQVIGW 287

Query:   290 HTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVV 349
             HTNEKSKRLRRFHVDMSGFAFNSTILWDPKRW+RPFS+  RQLDTVKEGFQET+FIEQVV
Sbjct:   288 HTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPFSHPTRQLDTVKEGFQETSFIEQVV 347

Query:   350 EDESQMEGTPPSCSRILNWHLHLDAHNLPYPRGWLLPRNLEVVLPVE 396
              DES+MEG PP+CS ILNWHLHLDA ++PYP+GW + +NL+ ++ ++
Sbjct:   348 ADESEMEGVPPACSSILNWHLHLDALDVPYPQGWAIQKNLQALITMK 394
GO:0006486 "protein glycosylation" evidence=ISS
GO:0015018 "galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0009834 "secondary cell wall biogenesis" evidence=IMP
GO:0010417 "glucuronoxylan biosynthetic process" evidence=IMP
GO:0042285 "xylosyltransferase activity" evidence=IMP
GO:0010584 "pollen exine formation" evidence=IMP
TAIR|locus:2061748 IRX9 "IRREGULAR XYLEM 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-191 b3gat2 "beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0036144 GlcAT-P "GlcAT-P" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1S6C4 B3GAT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|70880 B3gat1 "beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9E8 B3GAT1 "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PDW1 B3GAT1 "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5CB03 B3GAT1 "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F5H0S0 B3GAT1 "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8S626GT102_ORYSJ2, ., 4, ., -, ., -0.56820.64890.7321yesno
Q9SXC4IRX9H_ARATH2, ., 4, ., 2, ., -0.64000.94940.9543yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
3rd Layer2.4.1.135LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_II0979
glycosyl transferase (395 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
cd00218223 cd00218, GlcAT-I, Beta1,3-glucuronyltransferase I 1e-106
PLN02458346 PLN02458, PLN02458, transferase, transferring glyc 2e-83
pfam03360206 pfam03360, Glyco_transf_43, Glycosyltransferase fa 9e-81
>gnl|CDD|132995 cd00218, GlcAT-I, Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis Back     alignment and domain information 
 Score =  310 bits (797), Expect = e-106
 Identities = 109/236 (46%), Positives = 149/236 (63%), Gaps = 21/236 (8%)

Query: 145 LIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAA-SYETAELLRKTGVMYRQL 203
           + V+TPTY R +Q   L RLA  LRLV PPL WIVVE++   +   AELLR++G+MY  L
Sbjct: 3   IYVVTPTYARPVQKAELTRLAHTLRLV-PPLHWIVVEDSEEKTPLVAELLRRSGLMYTHL 61

Query: 204 VSQKNS--SSVKDRGVHQRNLALEHIERH---RLDGIVYFADDDNIYTMDLFDSLREISR 258
            ++  S  + +K RGV QRNLAL  I  H   +LDG+VYFADDDN Y ++LF+ +R+I R
Sbjct: 62  NAKTPSDPTWLKPRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMRKIKR 121

Query: 259 FGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDP 318
            G WPV ++        +EGPVC   +V+GWHT  K    R F +DM+GFAFNS +LWDP
Sbjct: 122 VGVWPVGLVG----GLRVEGPVCENGKVVGWHTAWKP--ERPFPIDMAGFAFNSKLLWDP 175

Query: 319 KRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSRILNWHLHLDA 374
            R   P+S         K G+QE++F+EQ+V D  ++E    +CS++L WH   + 
Sbjct: 176 PRAVFPYS--------AKRGYQESSFLEQLVLDRKELEPLANNCSKVLVWHTRTEK 223

Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43). Length = 223
>gnl|CDD|215252 PLN02458, PLN02458, transferase, transferring glycosyl groups Back     alignment and domain information
>gnl|CDD|217513 pfam03360, Glyco_transf_43, Glycosyltransferase family 43 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 396
PLN02458346 transferase, transferring glycosyl groups 100.0
cd00218223 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) 100.0
KOG1476330 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQ 100.0
PF03360207 Glyco_transf_43: Glycosyltransferase family 43; In 100.0
PF00535169 Glycos_transf_2: Glycosyl transferase family 2; In 97.87
cd04185202 GT_2_like_b Subfamily of Glycosyltransferase Famil 96.66
cd04184202 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot 96.45
cd04196214 GT_2_like_d Subfamily of Glycosyltransferase Famil 96.38
cd06421234 CESA_CelA_like CESA_CelA_like are involved in the 96.31
cd06423180 CESA_like CESA_like is the cellulose synthase supe 96.27
cd06433202 GT_2_WfgS_like WfgS and WfeV are involved in O-ant 96.14
PLN02726243 dolichyl-phosphate beta-D-mannosyltransferase 96.08
cd02522221 GT_2_like_a GT_2_like_a represents a glycosyltrans 96.04
cd04195201 GT2_AmsE_like GT2_AmsE_like is involved in exopoly 96.0
cd02511229 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 95.91
PRK10018279 putative glycosyl transferase; Provisional 95.83
PRK10063248 putative glycosyl transferase; Provisional 95.66
cd04192229 GT_2_like_e Subfamily of Glycosyltransferase Famil 95.65
cd04187181 DPM1_like_bac Bacterial DPM1_like enzymes are rela 95.62
cd04186166 GT_2_like_c Subfamily of Glycosyltransferase Famil 95.56
cd06435236 CESA_NdvC_like NdvC_like proteins in this family a 95.48
COG0463291 WcaA Glycosyltransferases involved in cell wall bi 95.41
cd06436191 GlcNAc-1-P_transferase N-acetyl-glucosamine transf 95.34
cd00761156 Glyco_tranf_GTA_type Glycosyltransferase family A 95.18
cd02525249 Succinoglycan_BP_ExoA ExoA is involved in the bios 94.8
cd06913219 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran 94.8
cd06434235 GT2_HAS Hyaluronan synthases catalyze polymerizati 94.62
PRK10073328 putative glycosyl transferase; Provisional 94.41
cd06427241 CESA_like_2 CESA_like_2 is a member of the cellulo 94.35
cd06442224 DPM1_like DPM1_like represents putative enzymes si 94.33
cd06438183 EpsO_like EpsO protein participates in the methano 93.95
PRK10714325 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi 93.76
cd06439251 CESA_like_1 CESA_like_1 is a member of the cellulo 93.47
cd04188211 DPG_synthase DPG_synthase is involved in protein N 93.43
cd02526237 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr 93.4
TIGR03469384 HonB hopene-associated glycosyltransferase HpnB. T 93.26
cd02520196 Glucosylceramide_synthase Glucosylceramide synthas 92.93
cd04179185 DPM_DPG-synthase_like DPM_DPG-synthase_like is a m 92.87
PTZ00260333 dolichyl-phosphate beta-glucosyltransferase; Provi 92.59
cd06420182 GT2_Chondriotin_Pol_N N-terminal domain of Chondro 92.52
TIGR01556281 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids 92.49
cd06437232 CESA_CaSu_A2 Cellulose synthase catalytic subunit 92.2
PRK13915306 putative glucosyl-3-phosphoglycerate synthase; Pro 90.99
PRK11204 420 N-glycosyltransferase; Provisional 90.47
cd02510299 pp-GalNAc-T pp-GalNAc-T initiates the formation of 89.87
PF10111281 Glyco_tranf_2_2: Glycosyltransferase like family 2 87.94
TIGR03111 439 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 86.85
PF13641228 Glyco_tranf_2_3: Glycosyltransferase like family 2 84.04
PRK14583 444 hmsR N-glycosyltransferase; Provisional 82.47
>PLN02458 transferase, transferring glycosyl groups Back     alignment and domain information 
Probab=100.00  E-value=2.8e-110  Score=819.48  Aligned_cols=321  Identities=39%  Similarity=0.712  Sum_probs=267.3

Q ss_pred             ccchhhhhhhhhhHHHHHHHHhhhcccCccccccccccccccc--cCCCC-CcccCCCCCcCcccccccceeeccc--cc
Q 016052           47 LRRKAWRKSLYRCLVFFALGLLLGMTPFGHVTTDIENRDVFFE--IKPPH-VNVQLDSDNRSDRMSKRDEILLDAV--SL  121 (396)
Q Consensus        47 ~~~~~w~r~~~~~~lcF~~G~f~g~~p~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~  121 (396)
                      .+.||||||++||+|||+||||+||+|.++++++|++...+-+  +.|.+ ..........++.+...-.-.--|+  +.
T Consensus         9 ~~~~lwkka~~h~slcfvmgfftgfap~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (346)
T PLN02458          9 KKVQLWKKAVVHFSLCFVMGFFTGFAPAGKASFFSSHEAASNKSQFSPQPVEMLHVATTPHHSNLNRTLINAQTPVPAPA   88 (346)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhccCcCccchhhcccccccccccCCCCCcccccccCccccccceeccccccCCCccCh
Confidence            3679999999999999999999999999999999887654421  11111 1011112222332221111000122  11


Q ss_pred             cc--cccccccccccccCCCCCCceEEEEcccCC-chhhhHHHHHHhhhhcCCCCCeeEEEEecCCCCHHHHHHHHhcCC
Q 016052          122 GV--DFRNEINTVESYRYDFEPRKQLIVITPTYN-RAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYETAELLRKTGV  198 (396)
Q Consensus       122 ~~--~~~~~~~~~~~~~~~~~~~~~IivVTPTy~-R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~~s~~va~lL~~sGl  198 (396)
                      ..  ..+......+.++.++.++|+||||||||. |++|+||||||||||||||||||||||||+..+++|++||++|||
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~rlIivVTPTY~rR~~Q~a~LTRLahTL~lVp~pL~WIVVEd~~~t~~va~lLrrsGl  168 (346)
T PLN02458         89 RSAESETASLLEKEEEEPKLAPRRLVIIVTPISTKDRYQGVLLRRLANTLRLVPPPLLWIVVEGQSDSEEVSEMLRKTGI  168 (346)
T ss_pred             hhhhhhhhhhhhccccccCCCCCceEEEECCCCCCcchhHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHcCC
Confidence            11  111112222445778889999999999998 799999999999999999999999999999999999999999999


Q ss_pred             ceeEeeecCCCCCCCCcchhHHHHHHHHHHhhCCCeEEEEecCCCcchhhhhHhhhcccccceeEeeEeeccCcceeEec
Q 016052          199 MYRQLVSQKNSSSVKDRGVHQRNLALEHIERHRLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEG  278 (396)
Q Consensus       199 ~y~HL~~~~~~~~~~~rg~~QRN~AL~~Ir~~~l~GVVyFADDDNtYdl~LFdemR~ir~vGvWPVGlvg~~~~~~~vEG  278 (396)
                      ||+||++++++++.+.|+++|||+||+|||+|+++||||||||||+||++||||||+||+||+||||++|++++++.|||
T Consensus       169 ~y~HL~~k~~~~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR~ik~vG~WPVGlvg~~~~~~~vEG  248 (346)
T PLN02458        169 MYRHLVFKENFTDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIRDIEVFGTWPMALLSANRNKVIIEG  248 (346)
T ss_pred             ceEEeccCCCCCCccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHhcCceeeecceEEeecccccceeEC
Confidence            99999999998888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeCCeeeEEEcCCCC-CCCcccccccceeeeeeccccCCcCCCCCCCccccccccccCCcchh-hHHHhh-ccCCCce
Q 016052          279 PVCNGSQVIGWHTNEKS-KRLRRFHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLDTVKEGFQET-TFIEQV-VEDESQM  355 (396)
Q Consensus       279 Pvc~~~kVvGW~t~~~~-~~~R~fpiDMAGFA~Ns~lLwdp~r~~rP~s~~~~~~d~vk~G~qEs-~fl~~L-v~d~~~l  355 (396)
                      |+|++|||+|||+.|.. .+.|+|||||||||||++|||||++|+||.+        +++|+||| .|++|| ++|++++
T Consensus       249 Pvc~~gkVvGWht~w~~~~~~RrfpIDMAGFAfNs~lLwdP~rw~Rp~~--------~~~~~qeS~~Fv~ql~~~de~q~  320 (346)
T PLN02458        249 PVCDSSQVIGWHLKKMNNETETRPPIHISSFAFNSSILWDPERWGRPSS--------VQGTSQNSIKFVKQVALEDETKL  320 (346)
T ss_pred             ceecCCeEeEEeccccccCCCCCCCcceeeeeeehhhhcChhhhCCCCC--------CCccchHHHHHHHHHhhcccccc
Confidence            99999999999999852 3569999999999999999999999999864        67899999 999999 6999999


Q ss_pred             eccC-CCCCEEEEEeccCCCC
Q 016052          356 EGTP-PSCSRILNWHLHLDAH  375 (396)
Q Consensus       356 Epla-~~C~kVLVWHtrte~~  375 (396)
                      ||++ +||++|||||++++..
T Consensus       321 egipa~~CskVmvWhl~~~~~  341 (346)
T PLN02458        321 KGIPPEDCSKIMLWRLNFPTR  341 (346)
T ss_pred             ccCCcCCCCEEEEEEeccCCc
Confidence            9996 6999999999999865

>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis Back     alignment and domain information
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis Back     alignment and domain information
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose Back     alignment and domain information
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily Back     alignment and domain information
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis Back     alignment and domain information
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase Back     alignment and domain information
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function Back     alignment and domain information
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis Back     alignment and domain information
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide Back     alignment and domain information
>PRK10018 putative glycosyl transferase; Provisional Back     alignment and domain information
>PRK10063 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1 Back     alignment and domain information
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase Back     alignment and domain information
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine Back     alignment and domain information
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold Back     alignment and domain information
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan Back     alignment and domain information
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine Back     alignment and domain information
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan Back     alignment and domain information
>PRK10073 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily Back     alignment and domain information
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 Back     alignment and domain information
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis Back     alignment and domain information
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional Back     alignment and domain information
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily Back     alignment and domain information
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation Back     alignment and domain information
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase Back     alignment and domain information
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB Back     alignment and domain information
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis Back     alignment and domain information
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily Back     alignment and domain information
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional Back     alignment and domain information
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase Back     alignment and domain information
>TIGR01556 rhamnosyltran L-rhamnosyltransferase Back     alignment and domain information
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex Back     alignment and domain information
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional Back     alignment and domain information
>PRK11204 N-glycosyltransferase; Provisional Back     alignment and domain information
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans Back     alignment and domain information
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ] Back     alignment and domain information
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 Back     alignment and domain information
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A Back     alignment and domain information
>PRK14583 hmsR N-glycosyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
1v82_A253 Crystal Structure Of Human Glcat-P Apo Form Length 2e-26
2d0j_A246 Crystal Structure Of Human Glcat-S Apo Form Length 9e-25
3cu0_A281 Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In 1e-23
1fgg_A261 Crystal Structure Of 1,3-Glucuronyltransferase I (G 1e-23
>pdb|1V82|A Chain A, Crystal Structure Of Human Glcat-P Apo Form Length = 253 Back     alignment and structure 
Iteration: 1

 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 126/239 (52%), Gaps = 31/239 (12%)
Query: 147 VITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENAASYE-TAELLRKTGVMYRQLVS 205
           V+TPTY+R +Q   L R+A  L L  P L W+VVE+       TA LLR TG+ Y  L  
Sbjct: 7   VVTPTYSRPVQKAELTRMANTL-LHVPNLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHV 65
Query: 206 Q-----KNSSSVKD----RGVHQRNLAL----EHIERHRLD-GIVYFADDDNIYTMDLFD 251
           +     K     +D    RG  QRNLAL    E   R+    G+VYFADDDN Y+++LF+
Sbjct: 66  ETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFE 125
Query: 252 SLREISRFGTWPVAMLAQSKNKAIIEGPVCNGS-QVIGWHTNEKSKRLRRFHVDMSGFAF 310
            +R   R   WPVA +   +     E P  NG+ +V+ W T       R F +DM+GFA 
Sbjct: 126 EMRSTRRVSVWPVAFVGGLR----YEAPRVNGAGKVVRWKTVFDPH--RPFAIDMAGFAV 179
Query: 311 NSTILWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSRILNWH 369
           N  ++      QR  S +  +L  VK G+QE++ + ++V   + +E    +C++IL WH
Sbjct: 180 NLRLI-----LQR--SQAYFKLRGVKGGYQESSLLRELV-TLNDLEPKAANCTKILVWH 230
>pdb|2D0J|A Chain A, Crystal Structure Of Human Glcat-S Apo Form Length = 246 Back     alignment and structure
>pdb|3CU0|A Chain A, Human Beta 1,3-Glucuronyltransferase I (Glcat-I) In Complex With Udp And Gal-Gal(6-So4)-Xyl(2-Po4)-O-Ser Length = 281 Back     alignment and structure
>pdb|1FGG|A Chain A, Crystal Structure Of 1,3-Glucuronyltransferase I (Glcat-I) Complexed With Gal-Gal-Xyl, Udp, And Mn2+ Length = 261 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
3cu0_A281 Galactosylgalactosylxylosylprotein 3-beta- glucuro 6e-90
1v84_A253 Galactosylgalactosylxylosylprotein 3-beta- glucuro 1e-86
2d0j_A246 Galactosylgalactosylxylosylprotein 3-beta- glucuro 5e-85
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A* Length = 281 Back     alignment and structure
 Score =  271 bits (695), Expect = 6e-90
 Identities = 80/280 (28%), Positives = 123/280 (43%), Gaps = 44/280 (15%)

Query: 140 EPRKQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEE-NAASYETAELLRKTGV 198
                + V+TPTY R +Q   L RL+Q L LV P L W++VE+    +   + LL  +G+
Sbjct: 18  GSHMTIYVVTPTYARLVQKAELVRLSQTLSLV-PRLHWLLVEDAEGPTPLVSGLLAASGL 76

Query: 199 MYRQLVSQKNSSS---------VKDRGVHQRNLALEHIERHR-------------LDGIV 236
           ++  LV     +          V  RGV QRN AL+ +                   G+V
Sbjct: 77  LFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVV 136

Query: 237 YFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGSQVIGWHTNEKSK 296
           YFADDDN Y+ +LF+ +R       WPV ++   +     EGP     +V+G+HT  +  
Sbjct: 137 YFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLR----FEGPQVQDGRVVGFHTAWEPS 192

Query: 297 RLRRFHVDMSGFAFNSTILWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQME 356
             R F VDM+GFA    +L D    Q   +           G  E++ +  +V D   +E
Sbjct: 193 --RPFPVDMAGFAVALPLLLDKPNAQFDST--------APRGHLESSLLSHLV-DPKDLE 241

Query: 357 GTPPSCSRILNWHLHLDAHNLPYP-----RGWLLPRNLEV 391
               +C+R+L WH   +   +        +G      +EV
Sbjct: 242 PRAANCTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV 281
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A* Length = 253 Back     alignment and structure
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens} Length = 246 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
1v84_A253 Galactosylgalactosylxylosylprotein 3-beta- glucuro 100.0
2d0j_A246 Galactosylgalactosylxylosylprotein 3-beta- glucuro 100.0
3cu0_A281 Galactosylgalactosylxylosylprotein 3-beta- glucuro 100.0
1qg8_A255 Protein (spore coat polysaccharide biosynthesis P 96.33
3bcv_A240 Putative glycosyltransferase protein; protein stru 96.1
3f1y_A387 Mannosyl-3-phosphoglycerate synthase; GT-A type gl 95.14
4fix_A 657 UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 94.53
3ckj_A329 Putative uncharacterized protein; mycobacteria, un 93.87
1xhb_A 472 Polypeptide N-acetylgalactosaminyltransferase 1; g 92.97
2z86_A 625 Chondroitin synthase; GT-A, glycosyltransferase A, 92.63
2ffu_A 501 Ppgalnact-2, polypeptide N-acetylgalactosaminyltra 92.56
2z86_A625 Chondroitin synthase; GT-A, glycosyltransferase A, 92.37
2d7i_A 570 Polypeptide N-acetylgalactosaminyltransferase 10; 90.45
3l7i_A 729 Teichoic acid biosynthesis protein F; GT-B fold, m 90.0
1fo8_A343 Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetyl 87.79
4hg6_A 802 Cellulose synthase subunit A; membrane translocati 84.76
2bo4_A 397 Mannosylglycerate synthase; catalysis, glycosyltra 83.0
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A* Back     alignment and structure
Probab=100.00  E-value=9.4e-94  Score=685.07  Aligned_cols=234  Identities=35%  Similarity=0.605  Sum_probs=212.4

Q ss_pred             CceEEEEcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCC-CCHHHHHHHHhcCCceeEeeecCC--CC-------C
Q 016052          142 RKQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENA-ASYETAELLRKTGVMYRQLVSQKN--SS-------S  211 (396)
Q Consensus       142 ~~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~-~s~~va~lL~~sGl~y~HL~~~~~--~~-------~  211 (396)
                      .|+||||||||+|++|+|||||||||||||| +||||||||+. .|++|+++|++|||+|+||+++++  ++       .
T Consensus         2 ~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp-~L~WIVVEd~~~~t~~va~lL~~sgl~y~HL~~~~p~~~~~~~~~~~~   80 (253)
T 1v84_A            2 LPTIHVVTPTYSRPVQKAELTRMANTLLHVP-NLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDP   80 (253)
T ss_dssp             CCEEEEEEEECCSTTHHHHHHHHHHHHTTSS-SEEEEEEESSSSCCHHHHHHHHHHCCEEEEEECCCCHHHHCC------
T ss_pred             CCEEEEEeCCCCccchhHHHHHHhhhhccCC-ceEEEEEeCCCCCCHHHHHHHHHcCCceEEeecCCCccccccccccCc
Confidence            4799999999999999999999999999997 99999999976 599999999999999999999863  11       2


Q ss_pred             CCCcchhHHHHHHHHHHh-----hCCCeEEEEecCCCcchhhhhHhhhcccccceeEeeEeeccCcceeEecceee-CCe
Q 016052          212 VKDRGVHQRNLALEHIER-----HRLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCN-GSQ  285 (396)
Q Consensus       212 ~~~rg~~QRN~AL~~Ir~-----~~l~GVVyFADDDNtYdl~LFdemR~ir~vGvWPVGlvg~~~~~~~vEGPvc~-~~k  285 (396)
                      ..+||++|||+||+|||+     |+++||||||||||+||+|||||||+||+||+||||++|+    ..+|||+|+ +||
T Consensus        81 ~~~rg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtYdl~LF~emR~i~~vgvWPVglvg~----~~~EgPv~~~~gk  156 (253)
T 1v84_A           81 RIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGG----LRYEAPRVNGAGK  156 (253)
T ss_dssp             -CCTTHHHHHHHHHHHHHHSCSSSCCCEEEEECCTTSEECHHHHHHHHTCSSEEECCEESCTT----SSEEEEEECTTSC
T ss_pred             cccchHHHHHHHHHHHHHhcccccccceeEEEecCCCcccHHHHHHHhccCeeEEEEEEeecC----cceecCeECCCCC
Confidence            257999999999999998     4789999999999999999999999999999999999997    569999999 899


Q ss_pred             eeEEEcCCCCCCCcccccccceeeeeecccc-CCcCCCCCCCccccccccccCCcchhhHHHhhccCCCceeccCCCCCE
Q 016052          286 VIGWHTNEKSKRLRRFHVDMSGFAFNSTILW-DPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSR  364 (396)
Q Consensus       286 VvGW~t~~~~~~~R~fpiDMAGFA~Ns~lLw-dp~r~~rP~s~~~~~~d~vk~G~qEs~fl~~Lv~d~~~lEpla~~C~k  364 (396)
                      |+|||+.|.+  .|+||||||||||||++|| +|++|.+        .+.+++|||||+||++|+ +.++|||+|+||+|
T Consensus       157 VvGw~~~w~~--~R~fpiDmAGFA~N~~lll~~p~a~~~--------~~~~~~g~~Es~fL~~l~-~~~~lEp~~~~C~~  225 (253)
T 1v84_A          157 VVRWKTVFDP--HRPFAIDMAGFAVNLRLILQRSQAYFK--------LRGVKGGYQESSLLRELV-TLNDLEPKAANCTK  225 (253)
T ss_dssp             EEEEECSSCT--TSTTCCCGGGEEEEHHHHHHSTTCCCC--------SSSSCTTCHHHHHHHHHC-CGGGEEECHHHHTS
T ss_pred             EeeeecccCC--CCCccceeeeeEEEehhhhhCCCceec--------cccCCCcchhhHHHHhhh-hHhhcEecCCCCCE
Confidence            9999999976  4999999999999999665 6776532        345789999999999998 46999999999999


Q ss_pred             EEEEeccCCCCCC-CCCCCCcCCCCccc
Q 016052          365 ILNWHLHLDAHNL-PYPRGWLLPRNLEV  391 (396)
Q Consensus       365 VLVWHtrte~~~~-~~p~~w~~~~~ld~  391 (396)
                      |||||||||+|.+ ..|++|.+++++||
T Consensus       226 VlvWHtrte~p~~~~e~~~~~~~~~~e~  253 (253)
T 1v84_A          226 ILVWHTRTEKPVLVNEGKKGFTDPSVEI  253 (253)
T ss_dssp             CCEECCCBCCCCCGGGTTTCSSCTTSCC
T ss_pred             EEEEecccCCcccccccccccCCCCccC
Confidence            9999999999975 67899999999986
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens} Back     alignment and structure
>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A* Back     alignment and structure
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* Back     alignment and structure
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} Back     alignment and structure
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A* Back     alignment and structure
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A* Back     alignment and structure
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A Back     alignment and structure
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 Back     alignment and structure
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Back     alignment and structure
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Back     alignment and structure
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Back     alignment and structure
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* Back     alignment and structure
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* Back     alignment and structure
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A* Back     alignment and structure
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides} Back     alignment and structure
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 396
d1v82a_252 c.68.1.7 (A:) Beta-1,3-glucuronyltransferase 1, Gl 4e-98
d3cu0a1261 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (g 5e-96
>d1v82a_ c.68.1.7 (A:) Beta-1,3-glucuronyltransferase 1, GlcAT-P {Human (Homo sapiens) [TaxId: 9606]} Length = 252 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: 1,3-glucuronyltransferase
domain: Beta-1,3-glucuronyltransferase 1, GlcAT-P
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  290 bits (744), Expect = 4e-98
 Identities = 82/264 (31%), Positives = 126/264 (47%), Gaps = 32/264 (12%)

Query: 145 LIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEE-NAASYETAELLRKTGVMYRQL 203
           + V+TPTY+R +Q   L R+A  L  V P L W+VVE+    +  TA LLR TG+ Y  L
Sbjct: 4   IHVVTPTYSRPVQKAELTRMANTLLHV-PNLHWLVVEDAPRRTPLTARLLRDTGLNYTHL 62

Query: 204 VSQKNSSS---------VKDRGVHQRNLALEHI-----ERHRLDGIVYFADDDNIYTMDL 249
             +   +             RG  QRNLAL  +           G+VYFADDDN Y+++L
Sbjct: 63  HVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLEL 122

Query: 250 FDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNGS-QVIGWHTNEKSKRLRRFHVDMSGF 308
           F+ +R   R   WPVA +   +     E P  NG+ +V+ W T       R F +DM+GF
Sbjct: 123 FEEMRSTRRVSVWPVAFVGGLRY----EAPRVNGAGKVVRWKTVFDPH--RPFAIDMAGF 176

Query: 309 AFNSTILWDPKRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSRILNW 368
           A N  ++    +              VK G+QE++ + ++V   + +E    +C++IL W
Sbjct: 177 AVNLRLILQRSQAYFKL-------RGVKGGYQESSLLRELV-TLNDLEPKAANCTKILVW 228

Query: 369 HLHLDAHNLP-YPRGWLLPRNLEV 391
           H   +   L    +      ++E+
Sbjct: 229 HTRTEKPVLVNEGKKGFTDPSVEI 252
>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo sapiens) [TaxId: 9606]} Length = 261 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
d1v82a_252 Beta-1,3-glucuronyltransferase 1, GlcAT-P {Human ( 100.0
d3cu0a1261 1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo 100.0
d1qg8a_255 Spore coat polysaccharide biosynthesis protein Sps 95.93
d1omza_265 Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga 95.14
d1xhba2328 Polypeptide N-acetylgalactosaminyltransferase 1, N 94.12
>d1v82a_ c.68.1.7 (A:) Beta-1,3-glucuronyltransferase 1, GlcAT-P {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: 1,3-glucuronyltransferase
domain: Beta-1,3-glucuronyltransferase 1, GlcAT-P
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-95  Score=690.21  Aligned_cols=233  Identities=35%  Similarity=0.623  Sum_probs=210.9

Q ss_pred             ceEEEEcccCCchhhhHHHHHHhhhhcCCCCCeeEEEEecCC-CCHHHHHHHHhcCCceeEeeecCCC--------C-CC
Q 016052          143 KQLIVITPTYNRAMQAYFLNRLAQVLRLVQPPLLWIVVEENA-ASYETAELLRKTGVMYRQLVSQKNS--------S-SV  212 (396)
Q Consensus       143 ~~IivVTPTy~R~~Q~a~LtRLa~TL~lVp~~L~WIVVEd~~-~s~~va~lL~~sGl~y~HL~~~~~~--------~-~~  212 (396)
                      |+||||||||+|++|+|||||||||||||| +||||||||+. .|++|+++|++|||||+||+++++.        + ..
T Consensus         2 p~I~vVTPTy~R~~Q~~~LtRLa~TL~lVp-~l~WIVVEda~~~t~~va~lL~~sgl~y~HL~~~~p~~~~~~~~~~~~~   80 (252)
T d1v82a_           2 PTIHVVTPTYSRPVQKAELTRMANTLLHVP-NLHWLVVEDAPRRTPLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPR   80 (252)
T ss_dssp             CEEEEEEEECCSTTHHHHHHHHHHHHTTCS-SEEEEEEESSSSCCHHHHHHHHHHCCEEEEEECCCCHHHHCCC-----C
T ss_pred             CCEEEECCCCCchhhHHHHHHHHhHHhcCC-CceEEEEeCCCCCCHHHHHHHHHcCCceEeeccCCCccccccccccccc
Confidence            789999999999999999999999999996 89999999865 6899999999999999999998631        1 23


Q ss_pred             CCcchhHHHHHHHHHHh-----hCCCeEEEEecCCCcchhhhhHhhhcccccceeEeeEeeccCcceeEecceeeC-Cee
Q 016052          213 KDRGVHQRNLALEHIER-----HRLDGIVYFADDDNIYTMDLFDSLREISRFGTWPVAMLAQSKNKAIIEGPVCNG-SQV  286 (396)
Q Consensus       213 ~~rg~~QRN~AL~~Ir~-----~~l~GVVyFADDDNtYdl~LFdemR~ir~vGvWPVGlvg~~~~~~~vEGPvc~~-~kV  286 (396)
                      .+||++|||+||+|||+     |+++||||||||||+||++||||||+||+|||||||++|+    +.||||+|++ |||
T Consensus        81 ~~rg~~qRn~aL~~iR~~~~~~~~~~GVVyFADDdNtYsl~lFdemR~ik~vgvWPVglvg~----~~vEgP~~~~~gkV  156 (252)
T d1v82a_          81 IPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGG----LRYEAPRVNGAGKV  156 (252)
T ss_dssp             CCTTHHHHHHHHHHHHHHSCTTCCCCEEEEECCTTSEECHHHHHHHTTCSSEEECCEESCTT----SSEEEEEECTTSCE
T ss_pred             ccccHHHHHHHHHHHHHhcccccCcceEEEEecCCCcccHHHHHHHhhcceEEEEeeEeecc----ccccCceEcCCCcE
Confidence            58999999999999987     6889999999999999999999999999999999999987    5699999975 799


Q ss_pred             eEEEcCCCCCCCcccccccceeeeeeccccCC-cCCCCCCCccccccccccCCcchhhHHHhhccCCCceeccCCCCCEE
Q 016052          287 IGWHTNEKSKRLRRFHVDMSGFAFNSTILWDP-KRWQRPFSNSIRQLDTVKEGFQETTFIEQVVEDESQMEGTPPSCSRI  365 (396)
Q Consensus       287 vGW~t~~~~~~~R~fpiDMAGFA~Ns~lLwdp-~r~~rP~s~~~~~~d~vk~G~qEs~fl~~Lv~d~~~lEpla~~C~kV  365 (396)
                      +|||+.|.++  |+|||||||||||+++||+. +.|.        ..+.+++|||||+||++|+ ++++|||+|+||+||
T Consensus       157 vgw~t~w~~~--R~fpidmAGFA~N~~lL~~~p~~~~--------~~~~~~~G~qes~fl~~Lv-~~~~lEpla~~cskV  225 (252)
T d1v82a_         157 VRWKTVFDPH--RPFAIDMAGFAVNLRLILQRSQAYF--------KLRGVKGGYQESSLLRELV-TLNDLEPKAANCTKI  225 (252)
T ss_dssp             EEEECSSCTT--STTCCCGGGEEEEHHHHHHSTTCCC--------CCSSCCTTCHHHHHHHHHC-CGGGEEECHHHHTSC
T ss_pred             EEEecCCCCC--CCccccceeeEeehHhhhcCccccc--------CcccCCCcchhhHHHHHcc-cHHhCccccCCCCEE
Confidence            9999999764  99999999999999999974 3332        2345789999999999996 578999999999999


Q ss_pred             EEEeccCCCCCC-CCCCCCcCCCCccc
Q 016052          366 LNWHLHLDAHNL-PYPRGWLLPRNLEV  391 (396)
Q Consensus       366 LVWHtrte~~~~-~~p~~w~~~~~ld~  391 (396)
                      ||||||||+|.+ +++++|.+++++||
T Consensus       226 lvWhtrte~p~l~~e~~~~~~~p~~ev  252 (252)
T d1v82a_         226 LVWHTRTEKPVLVNEGKKGFTDPSVEI  252 (252)
T ss_dssp             CEECCCBCCCCCGGGTTTCSSCTTSCC
T ss_pred             EEEEcccCCccccccccCCCCCCCCcC
Confidence            999999999976 58999999999986
>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure