Citrus Sinensis ID: 016061

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390------
MGEEGMTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFFFACSCYVPRFSKDIHSKWWCYYCGVLIISCSSSCKG
ccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccc
ccccccccccccccccccccccEHHHHHHHHHHHccccHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHEEHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEcccccc
mgeegmtsdvqqkaaktspkltvlPLIALIFYEvsggpfgvedsvkagggpllSLLGFLIFPLIWSIPEALITAELatsfpenggYVIWISsafgpfwgfqEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPfvvmgilsiprikprrwlvvdfkkvdwrgyFNSMFWNLNYWDKASTlagevenpsktfpKALLGAVVLVVSSYLIPllagtggltslssewsdgyFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFAsrskygtptlsiLCSATGVIFLSWMSFQEILEFLNFFFAcscyvprfskdihskwwCYYCGVLIISCSSSCKG
mgeegmtsdvqqkaaktspkltvLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGIlsiprikprrwlVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFFFACSCYVPRFSKDIHSKWWCYYCGVLIISCSSSCKG
MGEEGMTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAgggpllsllgflifpliWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKallgavvlvvssylIPllagtggltslssEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFFFACSCYVPRFSKDIHSKWWCYYCGVLIISCSSSCKG
********************LTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFFFACSCYVPRFSKDIHSKWWCYYCGVLIISC******
************************PLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFFFACSCYVPRFSKDIHSKWWCYYCGVLIISCSSSCKG
*****************SPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFFFACSCYVPRFSKDIHSKWWCYYCGVLIISCSSSCKG
*******************KLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFFFACSCYVPRFSKDIHSKWWCYYCGVLIISCSSSC**
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MGEEGMTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFFFACSCYVPRFSKDIHSKWWCYYCGVLIISCSSSCKG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query396 2.2.26 [Sep-21-2011]
Q9LH39479 Probable polyamine transp yes no 0.909 0.751 0.806 1e-162
Q9FFL1490 Polyamine transporter RMV no no 0.893 0.722 0.630 1e-127
Q9C6S5495 Probable polyamine transp no no 0.878 0.703 0.630 1e-126
Q6Z8D0531 Polyamine transporter PUT yes no 0.909 0.677 0.591 1e-123
A2X8M8531 Polyamine transporter PUT N/A no 0.909 0.677 0.591 1e-123
Q9C6S4482 Probable polyamine transp no no 0.883 0.726 0.592 1e-112
Q9LHN7478 Probable polyamine transp no no 0.906 0.751 0.505 1e-93
P37034464 Uncharacterized transport yes no 0.747 0.637 0.275 1e-12
P60066445 Arginine/agmatine antipor yes no 0.782 0.696 0.232 2e-09
P60065445 Arginine/agmatine antipor N/A no 0.782 0.696 0.232 2e-09
>sp|Q9LH39|PHSD_ARATH Probable polyamine transporter At3g19553 OS=Arabidopsis thaliana GN=At3g19553 PE=3 SV=1 Back     alignment and function desciption
 Score =  572 bits (1473), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 291/361 (80%), Positives = 325/361 (90%), Gaps = 1/361 (0%)

Query: 3   EEGMTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFP 62
           EE + +D      K SPKLT+LPL+ LIFYEVSGGPFGVEDSVK+GGGPLL+LLGFLIFP
Sbjct: 4   EETIVNDENSSKPKPSPKLTLLPLVFLIFYEVSGGPFGVEDSVKSGGGPLLALLGFLIFP 63

Query: 63  LIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFL 122
           LIWSIPEAL+TAELATSFPENGGYV+WISSAFGPFWGFQEGFWKW SGV+DNALYPVLFL
Sbjct: 64  LIWSIPEALVTAELATSFPENGGYVVWISSAFGPFWGFQEGFWKWFSGVMDNALYPVLFL 123

Query: 123 DYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGILS 182
           DYLKHS P+ + + AR+PALL IT +LTYLNYRGLHIVGFSAV L VFSLCPFVVM +L+
Sbjct: 124 DYLKHSFPVLDHVAARVPALLVITFSLTYLNYRGLHIVGFSAVVLAVFSLCPFVVMALLA 183

Query: 183 IPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVL 242
           +P I+P+RWL VD +K++WRGYFN+MFWNLNYWDKASTLAGEV+ P KTFPKAL GAV+L
Sbjct: 184 VPNIRPKRWLFVDTQKINWRGYFNTMFWNLNYWDKASTLAGEVDRPGKTFPKALFGAVLL 243

Query: 243 VVSSYLIPLLAGTGGLTSLSS-EWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAE 301
           V+ SYLIPL+AGTG L+S +S EWSDGYFAEVGMLIGG WLK WIQAA+AMSNLGLFEAE
Sbjct: 244 VMGSYLIPLMAGTGALSSSTSGEWSDGYFAEVGMLIGGVWLKGWIQAAAAMSNLGLFEAE 303

Query: 302 MSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFFF 361
           MS DAFQLLGMSE+GMLPA FA RSKYGTPT+SILCSATGVIFLSWMSFQEI+EFLNF +
Sbjct: 304 MSSDAFQLLGMSEIGMLPAFFAQRSKYGTPTISILCSATGVIFLSWMSFQEIIEFLNFLY 363

Query: 362 A 362
           A
Sbjct: 364 A 364
Probable cell membrane polyamine/proton symporter involved in the polyamine uptake in cells.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FFL1|RMV1_ARATH Polyamine transporter RMV1 OS=Arabidopsis thaliana GN=RMV1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C6S5|PHSB_ARATH Probable polyamine transporter At1g31830 OS=Arabidopsis thaliana GN=At1g31830 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z8D0|PUT1_ORYSJ Polyamine transporter PUT1 OS=Oryza sativa subsp. japonica GN=PUT1 PE=1 SV=1 Back     alignment and function description
>sp|A2X8M8|PUT1_ORYSI Polyamine transporter PUT1 OS=Oryza sativa subsp. indica GN=PUT1 PE=3 SV=1 Back     alignment and function description
>sp|Q9C6S4|PHSA_ARATH Probable polyamine transporter At1g31820 OS=Arabidopsis thaliana GN=At1g31820 PE=3 SV=1 Back     alignment and function description
>sp|Q9LHN7|PHSC_ARATH Probable polyamine transporter At3g13620 OS=Arabidopsis thaliana GN=At3g13620 PE=2 SV=1 Back     alignment and function description
>sp|P37034|Y1691_LEGPH Uncharacterized transporter lpg1691 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lpg1691 PE=3 SV=2 Back     alignment and function description
>sp|P60066|ADIC_SALTY Arginine/agmatine antiporter OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=adiC PE=1 SV=1 Back     alignment and function description
>sp|P60065|ADIC_SALTI Arginine/agmatine antiporter OS=Salmonella typhi GN=adiC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
225428955 504 PREDICTED: uncharacterized transporter l 0.914 0.718 0.881 1e-177
255573129493 amino acid transporter, putative [Ricinu 0.911 0.732 0.881 1e-176
296083070 506 unnamed protein product [Vitis vinifera] 0.911 0.713 0.872 1e-175
224105695457 neutral amino acid transport protein [Po 0.906 0.785 0.895 1e-175
224060729461 neutral amino acid transport protein [Po 0.911 0.783 0.892 1e-172
224084370429 neutral amino acid transport protein [Po 0.866 0.799 0.909 1e-170
449438333486 PREDICTED: probable polyamine transporte 0.893 0.728 0.827 1e-163
297834866479 amino acid permease family protein [Arab 0.914 0.755 0.813 1e-161
15230886479 Amino acid permease family protein [Arab 0.909 0.751 0.806 1e-160
148908969 502 unknown [Picea sitchensis] 0.901 0.711 0.762 1e-158
>gi|225428955|ref|XP_002263556.1| PREDICTED: uncharacterized transporter lpg1691 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 319/362 (88%), Positives = 343/362 (94%)

Query: 1   MGEEGMTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLI 60
           MGEEG+ SDV+   +KT+PKLT+LPLIALIFYEVSGGPFGVEDSV AGGGPLLSLLGFLI
Sbjct: 1   MGEEGIASDVKNTGSKTNPKLTLLPLIALIFYEVSGGPFGVEDSVSAGGGPLLSLLGFLI 60

Query: 61  FPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVL 120
           FPL+WSIPEAL+TAELATSFPENGGYVIWIS+AFGPFWGFQEGFWKW SGV+DNALYPVL
Sbjct: 61  FPLLWSIPEALVTAELATSFPENGGYVIWISAAFGPFWGFQEGFWKWFSGVMDNALYPVL 120

Query: 121 FLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMGI 180
           FLDYLKHS PIFN L ARIPALLGIT +LTYLNYRGLHIVGFSAVSL VFSLCPF+VM I
Sbjct: 121 FLDYLKHSFPIFNGLAARIPALLGITFSLTYLNYRGLHIVGFSAVSLAVFSLCPFIVMSI 180

Query: 181 LSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAV 240
           LSIPRI+P +WLVVDFKKV+WRGYFNSMFWNLNYWDKASTLAGEVE+PS+TFPKALLGAV
Sbjct: 181 LSIPRIRPGQWLVVDFKKVNWRGYFNSMFWNLNYWDKASTLAGEVEDPSRTFPKALLGAV 240

Query: 241 VLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEA 300
           VLVVSSY+IPLLAGTG L S SSEW DGYFAEVGMLIGGFWLKWWIQAA+AMSN+GLFEA
Sbjct: 241 VLVVSSYIIPLLAGTGALRSASSEWRDGYFAEVGMLIGGFWLKWWIQAAAAMSNMGLFEA 300

Query: 301 EMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLNFF 360
           EMS DAFQLLGMSE+GMLPAIFASRSKYGTPT+SILCSATGVIFLSWMSFQEI+EFLNF 
Sbjct: 301 EMSSDAFQLLGMSEIGMLPAIFASRSKYGTPTISILCSATGVIFLSWMSFQEIVEFLNFL 360

Query: 361 FA 362
           ++
Sbjct: 361 YS 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255573129|ref|XP_002527494.1| amino acid transporter, putative [Ricinus communis] gi|223533134|gb|EEF34892.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296083070|emb|CBI22474.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224105695|ref|XP_002313902.1| neutral amino acid transport protein [Populus trichocarpa] gi|222850310|gb|EEE87857.1| neutral amino acid transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224060729|ref|XP_002300260.1| neutral amino acid transport protein [Populus trichocarpa] gi|222847518|gb|EEE85065.1| neutral amino acid transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224084370|ref|XP_002335345.1| neutral amino acid transport protein [Populus trichocarpa] gi|222832591|gb|EEE71068.1| neutral amino acid transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449438333|ref|XP_004136943.1| PREDICTED: probable polyamine transporter At3g19553-like [Cucumis sativus] gi|449520126|ref|XP_004167085.1| PREDICTED: probable polyamine transporter At3g19553-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297834866|ref|XP_002885315.1| amino acid permease family protein [Arabidopsis lyrata subsp. lyrata] gi|297331155|gb|EFH61574.1| amino acid permease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15230886|ref|NP_188589.1| Amino acid permease family protein [Arabidopsis thaliana] gi|75311166|sp|Q9LH39.1|PHSD_ARATH RecName: Full=Probable polyamine transporter At3g19553 gi|9294126|dbj|BAB01977.1| unnamed protein product [Arabidopsis thaliana] gi|332642736|gb|AEE76257.1| Amino acid permease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|148908969|gb|ABR17588.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query396
TAIR|locus:2101520479 PUT5 "POLYAMINE UPTAKE TRANSPO 0.914 0.755 0.711 1.9e-140
TAIR|locus:2166354490 RMV1 "resistant to methyl viol 0.914 0.738 0.566 6.3e-108
TAIR|locus:2034451495 PUT2 "POLYAMINE UPTAKE TRANSPO 0.878 0.703 0.561 3.1e-106
UNIPROTKB|Q6Z8D0531 PUT1 "Polyamine transporter PU 0.858 0.640 0.554 3.2e-104
TAIR|locus:2034461482 PUT1 "POLYAMINE UPTAKE TRANSPO 0.924 0.759 0.513 2.8e-98
TAIR|locus:2086794478 PUT4 "POLYAMINE UPTAKE TRANSPO 0.906 0.751 0.439 3.4e-77
DICTYBASE|DDB_G0267504488 DDB_G0267504 "putative amino a 0.765 0.620 0.256 4e-24
TIGR_CMR|CBU_2020476 CBU_2020 "amino acid antiporte 0.694 0.577 0.255 6.2e-17
TIGR_CMR|CBU_0953441 CBU_0953 "amino acid permease 0.409 0.367 0.293 1.3e-06
TIGR_CMR|BA_5261438 BA_5261 "amino acid permease f 0.762 0.689 0.214 6.1e-06
TAIR|locus:2101520 PUT5 "POLYAMINE UPTAKE TRANSPORTER 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1374 (488.7 bits), Expect = 1.9e-140, P = 1.9e-140
 Identities = 259/364 (71%), Positives = 287/364 (78%)

Query:     1 MGEEG-MTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAXXXXXXXXXXXX 59
             MGEE  + +D      K SPKLT+LPL+ LIFYEVSGGPFGVEDSVK+            
Sbjct:     1 MGEEETIVNDENSSKPKPSPKLTLLPLVFLIFYEVSGGPFGVEDSVKSGGGPLLALLGFL 60

Query:    60 XXXXXWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPV 119
                  WSIPEAL+TAELATSFPENGGYV+WISSAFGPFWGFQEGFWKW SGV+DNALYPV
Sbjct:    61 IFPLIWSIPEALVTAELATSFPENGGYVVWISSAFGPFWGFQEGFWKWFSGVMDNALYPV 120

Query:   120 LFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCPFVVMG 179
             LFLDYLKHS P+ + + AR+PALL IT +LTYLNYRGLHIVGFSAV L VFSLCPFVVM 
Sbjct:   121 LFLDYLKHSFPVLDHVAARVPALLVITFSLTYLNYRGLHIVGFSAVVLAVFSLCPFVVMA 180

Query:   180 ILSIPRIKPRRWLVVDFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKXXXXX 239
             +L++P I+P+RWL VD +K++WRGYFN+MFWNLNYWDKASTLAGEV+ P KTFPK     
Sbjct:   181 LLAVPNIRPKRWLFVDTQKINWRGYFNTMFWNLNYWDKASTLAGEVDRPGKTFPKALFGA 240

Query:   240 XXXXXXXXXIPXXXXXXXXXXXXX-EWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLF 298
                      IP              EWSDGYFAEVGMLIGG WLK WIQAA+AMSNLGLF
Sbjct:   241 VLLVMGSYLIPLMAGTGALSSSTSGEWSDGYFAEVGMLIGGVWLKGWIQAAAAMSNLGLF 300

Query:   299 EAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLSWMSFQEILEFLN 358
             EAEMS DAFQLLGMSE+GMLPA FA RSKYGTPT+SILCSATGVIFLSWMSFQEI+EFLN
Sbjct:   301 EAEMSSDAFQLLGMSEIGMLPAFFAQRSKYGTPTISILCSATGVIFLSWMSFQEIIEFLN 360

Query:   359 FFFA 362
             F +A
Sbjct:   361 FLYA 364
GO:0005886 "plasma membrane" evidence=ISM
GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0015996 "chlorophyll catabolic process" evidence=RCA
GO:0015203 "polyamine transmembrane transporter activity" evidence=IGI;IDA
GO:0015846 "polyamine transport" evidence=IDA
TAIR|locus:2166354 RMV1 "resistant to methyl viologen 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034451 PUT2 "POLYAMINE UPTAKE TRANSPORTER 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z8D0 PUT1 "Polyamine transporter PUT1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2034461 PUT1 "POLYAMINE UPTAKE TRANSPORTER 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086794 PUT4 "POLYAMINE UPTAKE TRANSPORTER 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267504 DDB_G0267504 "putative amino acid permease" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_2020 CBU_2020 "amino acid antiporter" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0953 CBU_0953 "amino acid permease family protein" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5261 BA_5261 "amino acid permease family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LH39PHSD_ARATHNo assigned EC number0.80600.90900.7515yesno
Q6Z8D0PUT1_ORYSJNo assigned EC number0.59120.90900.6779yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00001446001
SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (504 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00010723001
SubName- Full=Chromosome undetermined scaffold_279, whole genome shotgun sequence; (209 aa)
  •     0.444
GSVIVG00003852001
SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (646 aa)
  •     0.440
GSVIVG00019109001
SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (600 aa)
  •     0.428

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 3e-22
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 3e-20
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 8e-17
TIGR00905473 TIGR00905, 2A0302, transporter, basic amino acid/p 8e-16
PRK10644445 PRK10644, PRK10644, arginine:agmatin antiporter; P 3e-15
PRK11357445 PRK11357, frlA, putative fructoselysine transporte 4e-15
TIGR00910 507 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyr 9e-10
TIGR03813474 TIGR03813, put_Glu_GABA_T, putative glutamate/gamm 2e-08
TIGR04298429 TIGR04298, his_histam_anti, histidine-histamine an 1e-07
pfam00324473 pfam00324, AA_permease, Amino acid permease 1e-06
TIGR03810468 TIGR03810, arg_ornith_anti, arginine-ornithine ant 4e-06
TIGR00908442 TIGR00908, 2A0305, ethanolamine permease 8e-05
PRK11021410 PRK11021, PRK11021, putative transporter; Provisio 0.003
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
 Score = 97.5 bits (243), Expect = 3e-22
 Identities = 74/312 (23%), Positives = 126/312 (40%), Gaps = 18/312 (5%)

Query: 47  AGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWK 106
           A    L  L+  +I   +     AL  AEL+++ P  GG   +   A GP  GF  G+  
Sbjct: 44  APAAILAWLIAGIIILFL-----ALSYAELSSAIPSAGGAYAYAKRALGPRLGFLAGWLY 98

Query: 107 WLSGVLDNALYPVLFLDYLKHSLPIFNLLIAR----IPALLGITGALTYLNYRGLHIVGF 162
            L+ V+  A   +    YL +  P   LL       I   L +   LT LN RG+     
Sbjct: 99  LLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAK 158

Query: 163 SAVSLLVFSLCPFVVMGILSIPRIKPRRW-LVVDFKKVDW-----RGYFNSMFWNLNYWD 216
               + +  +   ++  IL +         L   F                 F+    ++
Sbjct: 159 INSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFE 218

Query: 217 KASTLAGEVENPSKTFPKALLGAVVLVVSSYLIPLLAGTGGL--TSLSSEWSDGYFAEVG 274
             +TLA EV+NP +T P+A++ ++++V+  Y++  L   G L    L++       A   
Sbjct: 219 AIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAA 278

Query: 275 MLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRS-KYGTPTL 333
           +  GG W    I   + +S  G   A +   +  L  M+  G+LP  FA  + K  TP +
Sbjct: 279 LFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVI 338

Query: 334 SILCSATGVIFL 345
           +++ +    + L
Sbjct: 339 ALILTGIISLIL 350

Length = 466
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional Back     alignment and domain information
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease Back     alignment and domain information
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 396
PRK10655438 potE putrescine transporter; Provisional 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
KOG1287479 consensus Amino acid transporters [Amino acid tran 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
TIGR00906 557 2A0303 cationic amino acid transport permease. 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
PRK10836489 lysine transporter; Provisional 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
PRK11021410 putative transporter; Provisional 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
KOG1286 554 consensus Amino acid transporters [Amino acid tran 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
KOG1289550 consensus Amino acid transporters [Amino acid tran 100.0
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.97
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.94
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.9
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.87
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.87
TIGR00814397 stp serine transporter. The HAAAP family includes 99.86
PHA02764399 hypothetical protein; Provisional 99.85
PRK10483414 tryptophan permease; Provisional 99.84
PRK09664415 tryptophan permease TnaB; Provisional 99.82
PRK15132403 tyrosine transporter TyrP; Provisional 99.82
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.8
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.79
PRK13629443 threonine/serine transporter TdcC; Provisional 99.78
PF03845320 Spore_permease: Spore germination protein; InterPr 99.78
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 99.68
COG3949349 Uncharacterized membrane protein [Function unknown 99.55
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 99.53
KOG1303437 consensus Amino acid transporters [Amino acid tran 99.47
TIGR00835425 agcS amino acid carrier protein. Members of the AG 99.44
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 99.44
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 99.14
KOG1304449 consensus Amino acid transporters [Amino acid tran 99.07
PTZ00206467 amino acid transporter; Provisional 99.06
PLN03074473 auxin influx permease; Provisional 99.05
PRK15433439 branched-chain amino acid transport system 2 carri 98.99
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 98.96
PRK11375484 allantoin permease; Provisional 98.95
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 98.92
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.81
TIGR00813407 sss transporter, SSS family. have different number 98.81
COG1457442 CodB Purine-cytosine permease and related proteins 98.75
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.68
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.63
PRK11017404 codB cytosine permease; Provisional 98.61
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.52
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.52
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.48
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.4
KOG1305411 consensus Amino acid transporter protein [Amino ac 98.38
PRK15419502 proline:sodium symporter PutP; Provisional 98.35
PRK12488 549 acetate permease; Provisional 98.33
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.25
PRK09395 551 actP acetate permease; Provisional 98.21
PRK10484523 putative transporter; Provisional 98.18
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.12
PF01566358 Nramp: Natural resistance-associated macrophage pr 98.01
COG0733439 Na+-dependent transporters of the SNF family [Gene 98.01
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.92
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.8
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.8
COG4147529 DhlC Predicted symporter [General function predict 97.77
PRK00701439 manganese transport protein MntH; Reviewed 97.53
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 97.49
PF02705 534 K_trans: K+ potassium transporter; InterPro: IPR00 97.31
PLN00148 785 potassium transporter; Provisional 95.96
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 95.91
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 95.9
PRK10745 622 trkD potassium transport protein Kup; Provisional 95.83
PLN00149 779 potassium transporter; Provisional 95.58
PLN00150 779 potassium ion transporter family protein; Provisio 95.36
PLN00151 852 potassium transporter; Provisional 95.32
KOG4303524 consensus Vesicular inhibitory amino acid transpor 95.2
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 94.46
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 94.24
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 92.45
COG3158 627 Kup K+ transporter [Inorganic ion transport and me 90.62
PRK09950506 putative transporter; Provisional 89.34
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 85.83
PRK15433439 branched-chain amino acid transport system 2 carri 85.6
PRK09928 679 choline transport protein BetT; Provisional 83.4
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 82.1
COG1966 575 CstA Carbon starvation protein, predicted membrane 80.55
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.7e-50  Score=396.64  Aligned_cols=364  Identities=18%  Similarity=0.166  Sum_probs=301.0

Q ss_pred             CCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhhh
Q 016061           16 KTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAF   94 (396)
Q Consensus        16 ~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~~   94 (396)
                      +++||+++++++++.+++++| |+|..|..+++ +|+. .+++|++++++ .++.+++++|+++++|++||.|.|+++.+
T Consensus         3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~-~G~~-~~~~w~i~~~~-~~~~a~~~aeL~~~~P~~GG~y~y~~~~~   79 (438)
T PRK10655          3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQ-VGTI-SILSWLVTAVG-SMALAYAFAKCGMFSRKSGGMGGYAEYAF   79 (438)
T ss_pred             CccCcccHHHHHHHHHHhhhhhHHHHhHHHHHH-hhHH-HHHHHHHHHHH-HHHHHHHHHHHhhhCCCCCchHHHHHHHc
Confidence            357899999999999999999 99999888776 7774 57899999998 99999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHH
Q 016061           95 GPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLCP  174 (396)
Q Consensus        95 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~  174 (396)
                      ||..|++++|.+++.+.......+....+|...+++...++.+.....+++++..+.+|++|.|..+++|.+.+..++++
T Consensus        80 G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~  159 (438)
T PRK10655         80 GKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVIIP  159 (438)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988776666667778888777743344556666677778889999999999999999999988887


Q ss_pred             HHHHHHHHhccccCCCcccc-ccccC----ChHHHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHHH
Q 016061          175 FVVMGILSIPRIKPRRWLVV-DFKKV----DWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYLI  249 (396)
Q Consensus       175 ~~~~~i~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~~  249 (396)
                      ++++.+.++...+++++.+. ...+.    ++...+...+|+|.|+|.+++++||+|||+||+||+++.+..+++++|++
T Consensus       160 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l  239 (438)
T PRK10655        160 VVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIV  239 (438)
T ss_pred             HHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHH
Confidence            77777766554444444321 11111    12223456799999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhcCCCC
Q 016061          250 PLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYG  329 (396)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~~  329 (396)
                      .........|++++.+++.|..+..++..+++...++....+++.+++.++++.+.+|++++++|||.+|++|+|+||++
T Consensus       240 ~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~v~~~~  319 (438)
T PRK10655        240 STNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVTKVD  319 (438)
T ss_pred             HHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhCcCC
Confidence            99988888888777767789999888888888888888888889999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHhh--------hcHHHHHHHHHH----HHHHH----HhhccccCCCCCcccccc
Q 016061          330 TPTLSILCSATGVIFLSW--------MSFQEILEFLNF----FFACS----CYVPRFSKDIHSKWWCYY  382 (396)
Q Consensus       330 ~P~~ai~~~~~i~~~~~~--------~~~~~l~~~~~~----~~~~~----~~~~~~~~~~~~~~~~p~  382 (396)
                      +|++++++..+++.++.+        .+++.+.++.++    .|.+.    ..+|||+|+.+||||.|.
T Consensus       320 tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~~  388 (438)
T PRK10655        320 APVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVAN  388 (438)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHH
Confidence            999999999887765542        236666666664    23322    235666777889998653

>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
3ncy_A445 X-Ray Crystal Structure Of An Arginine Agmatine Ant 1e-04
3lrb_A445 Structure Of E. Coli Adic Length = 445 4e-04
3l1l_A445 Structure Of Arg-Bound Escherichia Coli Adic Length 8e-04
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter (Adic) In Complex With A Fab Fragment Length = 445 Back     alignment and structure 
Iteration: 1

 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 109/284 (38%), Gaps = 29/284 (10%)
Query: 70  ALITAELATSFPENGGYVIWISSAFGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSL 129
           +++ A++++  P  GG   +    FGPF G+Q     WL+  + N    V+ + YL +  
Sbjct: 57  SMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFF 116
Query: 130 PIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLL-----VFSLCPFVVMGILSIP 184
           PI      + P +L +T       +  L+IVG   ++ +     V +L P V + +    
Sbjct: 117 PIL-----KDPLVLTLTCVAVLWIFVLLNIVGPKMITRVQAVATVLALVPIVGIAVFGWF 171
Query: 185 RIKPRRWLVV-DFKKVDWRGYFNSMFWNLNYW-----DKASTLAGEVENPSKTFPKXXXX 238
             K   ++   +   ++  G   S   N+  W     + AS  AG V+NP +  P     
Sbjct: 172 WFKGETYMAAWNVSGMNTFGAIQSTL-NVTLWSFIGVESASVAAGVVKNPKRNVPIATIG 230
Query: 239 XXXXXXXXXXIPXXXXXXXXXXXXXEWSDGYFAEVGMLIGGFW---LKWWIQAASAMSNL 295
                     +                S   F +   +  G     +  +  AA  + +L
Sbjct: 231 GVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSL 290
Query: 296 G---LFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSIL 336
           G   L   + +  A      ++ G+ P IFA  +K GTP   +L
Sbjct: 291 GGWTLLAGQTAKAA------ADDGLFPPIFARVNKAGTPVAGLL 328
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic Length = 445 Back     alignment and structure
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic Length = 445 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query396
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 2e-46
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 2e-31
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 5e-19
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure
 Score =  165 bits (420), Expect = 2e-46
 Identities = 74/360 (20%), Positives = 129/360 (35%), Gaps = 26/360 (7%)

Query: 6   MTSDVQQKAAKTSPKLTVLPLIALIFYEVSGGPFGVEDSVKAGGGPLLSLLGFLIFPLIW 65
           M + VQ   AK   +LT+L   A+           V +           +   L+  ++W
Sbjct: 1   MATSVQTGKAK---QLTLLGFFAITA----SMVMAVYEYPTFATSGFSLVFFLLLGGILW 53

Query: 66  SIPEALITAELATSFP-ENGGYVIWISSAFGPFWGFQEGFWKWLS---GVLDNALYPVLF 121
            IP  L  AE+AT    E GG   W+S+  GP WGF    + +L    G +    + +  
Sbjct: 54  FIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGA 113

Query: 122 LDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVG-FSAVSLLVFSLCPFVVMGI 180
           L Y+     +    I +  A L I  AL    + G       + V      L P  ++  
Sbjct: 114 LSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIA 173

Query: 181 LSIPRIKPRRWLVV---------DFKKVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKT 231
           L+   +     + +         DF KV     F +   +    + ++T   E+ NP + 
Sbjct: 174 LAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRD 233

Query: 232 FPKALLGAVVLVVSSYLIPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGF-----WLKWWI 286
           +P A+L  +V  +    +  L+    +       S G      +L+        W    I
Sbjct: 234 YPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVI 293

Query: 287 QAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKYGTPTLSILCSATGVIFLS 346
            A   +  L    + + G +  +   ++  +LPA FA  +K G P   ++          
Sbjct: 294 SALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSIAL 353
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.11
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 98.15
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 97.93
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.41
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=1.6e-48  Score=382.61  Aligned_cols=342  Identities=19%  Similarity=0.290  Sum_probs=296.5

Q ss_pred             cCCCCcccchhHHHHHHhhhcc-cccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhhh
Q 016061           15 AKTSPKLTVLPLIALIFYEVSG-GPFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSA   93 (396)
Q Consensus        15 ~~~~r~l~~~~~~~l~~~~~~G-g~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el~~~~p~~Gg~y~~~~~~   93 (396)
                      ++++|+++++|++++.++.++| |+|..|..+.+ +|+. .+++|++++++ .++.+++++|+++++|++||.|+|+++.
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~-~G~~-~~~~~li~~~~-~~~~a~~~~el~~~~p~~Gg~y~~~~~~   80 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLAS-TGGI-AIYGWLVTIIG-ALGLSMVYAKMSFLDPSPGGSYAYARRC   80 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHH-HCTH-HHHHHHHHHHH-HHHHHHHHHHHHHHCCCTTTHHHHHHHH
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHH-hhhH-HHHHHHHHHHH-HHHHHHHHHHHHccCCCCCCchhhHHhH
Confidence            3568999999999999999999 88988877766 6875 56999999998 9999999999999999999999999999


Q ss_pred             hCChhHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHH
Q 016061           94 FGPFWGFQEGFWKWLSGVLDNALYPVLFLDYLKHSLPIFNLLIARIPALLGITGALTYLNYRGLHIVGFSAVSLLVFSLC  173 (396)
Q Consensus        94 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~  173 (396)
                      +||.+|++.+|.+++++....+......+++++.++|...++++....++++.++...+|++|.|..++++.+.+..+++
T Consensus        81 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~  160 (445)
T 3l1l_A           81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI  160 (445)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888999999999888886555577777888888999999999999999999999999998


Q ss_pred             HHHHHHHHHhccccCCCccc-cccc----cCChHHHHHHHHHhhchhhhhhhhhccccCCCcchHHHHHHHHHHHHHHHH
Q 016061          174 PFVVMGILSIPRIKPRRWLV-VDFK----KVDWRGYFNSMFWNLNYWDKASTLAGEVENPSKTFPKALLGAVVLVVSSYL  248 (396)
Q Consensus       174 ~~~~~~i~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~k~~p~ai~~~~~~~~~~y~  248 (396)
                      .++++++.++.+.+++++.+ +...    ..++...+...+|+|.|+|..++++||+|||+|++||+++.+..++.++|+
T Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~  240 (445)
T 3l1l_A          161 PIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYV  240 (445)
T ss_dssp             HHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHH
Confidence            88888877776655544422 1111    112333446679999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCccccccHHHHHHHHhchhHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHhhcCCChhHHhhcCCC
Q 016061          249 IPLLAGTGGLTSLSSEWSDGYFAEVGMLIGGFWLKWWIQAASAMSNLGLFEAEMSGDAFQLLGMSEMGMLPAIFASRSKY  328 (396)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~sR~l~~~a~dg~lP~~~~~~~~~  328 (396)
                      +..++.....|+++...++.|+.+++++..+++...++.+..+++.+++.++.+.+.+|.+++|+|||.+|++|+|+||+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~  320 (445)
T 3l1l_A          241 LSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKA  320 (445)
T ss_dssp             HHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCCTT
T ss_pred             HHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcCCC
Confidence            99999999999988877788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHhh--------hcHHHHHHHHHH
Q 016061          329 GTPTLSILCSATGVIFLSW--------MSFQEILEFLNF  359 (396)
Q Consensus       329 ~~P~~ai~~~~~i~~~~~~--------~~~~~l~~~~~~  359 (396)
                      ++|++++++..+++.++.+        ..++.+.++.++
T Consensus       321 ~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  359 (445)
T 3l1l_A          321 GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVI  359 (445)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            9999999999987766552        236677777664
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query396
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 95.55
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.55  E-value=0.9  Score=41.93  Aligned_cols=51  Identities=25%  Similarity=0.317  Sum_probs=32.2

Q ss_pred             chhHHHHHHhhhcc-c-ccCchhHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016061           23 VLPLIALIFYEVSG-G-PFGVEDSVKAGGGPLLSLLGFLIFPLIWSIPEALITAEL   76 (396)
Q Consensus        23 ~~~~~~l~~~~~~G-g-~f~~~~~~~~~~G~~~~~~~~~i~~l~~~l~~a~~~~el   76 (396)
                      ..+.+.-.+|..+| | +.-.|....+.+|. +.++.+++..++..+|  +.+.|+
T Consensus         7 ~~~fila~~g~avGlGNiWrFPyl~~~nGGg-aFlipY~~~l~l~gvP--ll~lE~   59 (509)
T d2a65a1           7 RLGLILAMAGNAVGLGNFLRFPVQAAENGGG-AFMIPYIIAFLLVGIP--LMWIEW   59 (509)
T ss_dssp             HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTH-HHHHHHHHHHHHTHHH--HHHHHH
T ss_pred             hHHHHHHHHHHHhcccHHHhhhHHHHhcCCc-hhHHHHHHHHHHHHHH--HHHHHH
Confidence            45667778888888 5 66667777774454 5567777665544444  345554