Citrus Sinensis ID: 016078

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
MASRAVLPQNQLKGEVKQKNVLADGRGRRVLQDIGNFVTERAPQGKKSITEVVNAAVGKEKSKVIDKPKKPESVIVISSDDESDESKPVNRKISRKEPNKSFTSVLTARSKAACGLINKPKDLISDIDVTDIDNELAVVEYVDDIYKFYKLTEDEGRVHDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKFSSLDCGAVSLLKPAKSLLS
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccEEcccccccccc
ccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccHHHcHHHHHHcccccccccEEEccccccccccccccccccccccccccccccccccHHHcccccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHEEEcccccHHcHEccccccHHHcc
masravlpqnqlkgevkqknvladgrgRRVLQDIGNfvterapqgkkSITEVVNAAVgkekskvidkpkkpesvivissddesdeskpvnrkisrkepnksfTSVLTARSKAACglinkpkdlisdidvtdidneLAVVEYVDDIYKFYKltedegrvhdymdaqpeINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKyeeiwapevndfvrisdSAYLREQVLAAEKAILRKLEWhltvptpyVFLVRYIKASVTSDKEMENMVFFLAElgqmqyptivLYCPSMIAASAVYAARCTlnknpfwtetlkhhtgysedQLRNCAKLLVKFHSAAAESKLKAVYKKFssldcgavsllkpakslls
masravlpqnqlkgevkqknvladgrgrrvLQDIGNfvterapqgkksitEVVNaavgkekskvidkpkkpesvivissddesdeskpvnrkisrkepnksftsvLTARSKAAcglinkpkdlisdidvTDIDNELAVVEYVDDIYKFYKLTEDEGRVHDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEwhltvptpyvFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKFSsldcgavsllkpakslls
MASRAVLPQNQLKGEVKQKNVLADGRGRRVLQDIGNFVTERAPQGKKSITEVVNAAVGKEKSKVIDKPKKPesvivissddesdesKPVNRKISRKEPNKSFTSVLTARSKAACGLINKPKDLISDIDVTDIDNELAVVEYVDDIYKFYKLTEDEGRVHDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKFSSLDCGAVSLLKPAKSLLS
****************************RVLQDIGNFV*******************************************************************LTARSKAACGLINKPKDLISDIDVTDIDNELAVVEYVDDIYKFYKLTEDEGRVHDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKFSSLDCGAVSLL********
********************************DI****************************************************************************************LISDIDVTDIDNELAVVEYVDDIYKFYKLTEDEGRVHDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKFSSLDCGAVSLLKPAKS***
MASRAVLPQNQLKGEVKQKNVLADGRGRRVLQDIGNFVTERAPQGKKSITEVVNAAVGKEKSKVIDKPKKPESVIVIS***************************LTARSKAACGLINKPKDLISDIDVTDIDNELAVVEYVDDIYKFYKLTEDEGRVHDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKFSSLDCGAVSLLKPAKSLLS
*************************************VT**********************************************************************************DLISDIDVTDIDNELAVVEYVDDIYKFYKLTEDEGRVHDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKFSSLDCGAVSLLKPA*****
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MASRAVLPQNQLKGEVKQKNVLADGRGRRVLQDIGNFVTERAPQGKKSITEVVNAAVGKEKSKVIDKPKKPESVIVISSDDESDESKPVNRKISRKEPNKSFTSVLTARSKAACGLINKPKDLISDIDVTDIDNELAVVEYVDDIYKFYKLTEDEGRVHDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKFSSLDCGAVSLLKPAKSLLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query395 2.2.26 [Sep-21-2011]
O48790387 Cyclin-B1-4 OS=Arabidopsi yes no 0.939 0.958 0.576 1e-123
P25011454 G2/mitotic-specific cycli no no 0.989 0.861 0.531 1e-121
P34800473 G2/mitotic-specific cycli N/A no 0.989 0.826 0.522 1e-120
Q0JIF2449 Cyclin-B1-1 OS=Oryza sati yes no 0.967 0.850 0.524 1e-118
P34801441 G2/mitotic-specific cycli N/A no 0.979 0.877 0.521 1e-115
Q39067445 Cyclin-B1-2 OS=Arabidopsi no no 0.987 0.876 0.498 1e-109
Q0DH40449 Cyclin-B1-5 OS=Oryza sati no no 0.926 0.815 0.486 1e-106
Q39069414 Cyclin-B1-3 OS=Arabidopsi no no 0.951 0.908 0.490 1e-104
P30183428 Cyclin-B1-1 OS=Arabidopsi no no 0.994 0.918 0.514 1e-103
Q0JNK6470 Cyclin-B1-3 OS=Oryza sati no no 0.908 0.763 0.526 1e-100
>sp|O48790|CCB14_ARATH Cyclin-B1-4 OS=Arabidopsis thaliana GN=CYCB1-4 PE=2 SV=1 Back     alignment and function desciption
 Score =  441 bits (1133), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/392 (57%), Positives = 288/392 (73%), Gaps = 21/392 (5%)

Query: 1   MASRAV--LP-QNQLKGEVKQKNVLADGR-GRRVLQDIGNFVTERAPQGKKSITEVVNAA 56
           MAS  V  LP Q  + GE+K KNV   GR  R+VL DIGN VT R            + A
Sbjct: 1   MASSRVSDLPHQRGIAGEIKPKNVAGHGRQNRKVLGDIGNLVTGR------------DVA 48

Query: 57  VGKEKSKVIDKPKK-PESVIVISSDDESDESKPVNRKISRKEPNKSFTSVLTARSKAACG 115
            GK+ +K   +P++  ++ +++ S DE+++ KP   + +     K+FT+ L ARSKAA G
Sbjct: 49  TGKDVAKKAKQPQQQTKAEVIVISPDENEKCKPHFSRRTHIRGTKTFTATLRARSKAASG 108

Query: 116 LINKPKDLISDIDVTDIDNELAVVEYVDDIYKFYKLTEDEGRVHDYMDAQPEINAKMRSI 175
           L    KD + DID  D +NELA VEYV+DI+KFY+  E+EG + DY+ +QPEIN KMRSI
Sbjct: 109 L----KDAVIDIDAVDANNELAAVEYVEDIFKFYRTVEEEGGIKDYIGSQPEINEKMRSI 164

Query: 176 LVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAP 235
           L+DWL +VHRKFELMPETLYLT+++VDRFLS   + R+ELQL+G+ AMLIACKYEEIWAP
Sbjct: 165 LIDWLVDVHRKFELMPETLYLTINLVDRFLSLTMVHRRELQLLGLGAMLIACKYEEIWAP 224

Query: 236 EVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMV 295
           EVNDFV ISD+AY R+QVLA EK+IL ++EW++TVPTPYVFL RY+KA+V  D EME +V
Sbjct: 225 EVNDFVCISDNAYNRKQVLAMEKSILGQVEWYITVPTPYVFLARYVKAAVPCDAEMEKLV 284

Query: 296 FFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAK 355
           F+LAELG MQYP +VL  PSM+AASAVYAAR  L K PFWTETLKHHTGYSED++   AK
Sbjct: 285 FYLAELGLMQYPIVVLNRPSMLAASAVYAARQILKKTPFWTETLKHHTGYSEDEIMEHAK 344

Query: 356 LLVKFHSAAAESKLKAVYKKFSSLDCGAVSLL 387
           +L+K   +A+ESKL AV+KK+S  +   V+LL
Sbjct: 345 MLMKLRDSASESKLIAVFKKYSVSENAEVALL 376

Arabidopsis thaliana (taxid: 3702)
>sp|P25011|CCNB1_SOYBN G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|P34800|CCN1_ANTMA G2/mitotic-specific cyclin-1 OS=Antirrhinum majus PE=2 SV=1 Back     alignment and function description
>sp|Q0JIF2|CCB11_ORYSJ Cyclin-B1-1 OS=Oryza sativa subsp. japonica GN=CYCB1-1 PE=2 SV=2 Back     alignment and function description
>sp|P34801|CCN2_ANTMA G2/mitotic-specific cyclin-2 OS=Antirrhinum majus PE=2 SV=1 Back     alignment and function description
>sp|Q39067|CCB12_ARATH Cyclin-B1-2 OS=Arabidopsis thaliana GN=CYCB1-2 PE=1 SV=2 Back     alignment and function description
>sp|Q0DH40|CCB15_ORYSJ Cyclin-B1-5 OS=Oryza sativa subsp. japonica GN=CYCB1-5 PE=3 SV=1 Back     alignment and function description
>sp|Q39069|CCB13_ARATH Cyclin-B1-3 OS=Arabidopsis thaliana GN=CYCB1-3 PE=2 SV=2 Back     alignment and function description
>sp|P30183|CCB11_ARATH Cyclin-B1-1 OS=Arabidopsis thaliana GN=CYCB1-1 PE=1 SV=2 Back     alignment and function description
>sp|Q0JNK6|CCB13_ORYSJ Cyclin-B1-3 OS=Oryza sativa subsp. japonica GN=CYCB1-3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
224106023402 cyclin [Populus trichocarpa] gi|22285042 0.972 0.955 0.682 1e-151
89111295440 cyclin B [Camellia sinensis] 0.994 0.893 0.639 1e-143
351724223440 mitotic cyclin b1-type [Glycine max] gi| 0.982 0.881 0.607 1e-140
357493825421 Cyclin [Medicago truncatula] gi|35551853 0.977 0.916 0.619 1e-140
255564474390 cyclin B, putative [Ricinus communis] gi 0.886 0.897 0.645 1e-138
84579361433 Cyclin B1-1 [Daucus carota] 0.987 0.900 0.587 1e-136
22830757432 B1 type cyclin [Daucus carota] 0.987 0.902 0.587 1e-136
356501386440 PREDICTED: G2/mitotic-specific cyclin-1- 0.946 0.85 0.623 1e-135
6093215437 CYCB1-1 protein [Petunia x hybrida] 0.979 0.885 0.608 1e-134
7271222425 cyclin B1 [Nicotiana tabacum] 0.979 0.910 0.609 1e-134
>gi|224106023|ref|XP_002314016.1| cyclin [Populus trichocarpa] gi|222850424|gb|EEE87971.1| cyclin [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 280/410 (68%), Positives = 330/410 (80%), Gaps = 26/410 (6%)

Query: 1   MASR--AVLPQNQLKGEVKQKNVL-ADGRGRRVLQDIGNFVTERAPQGKKSITEVVNAAV 57
           M SR   V  Q Q +GE KQK    ADGR RRVLQDIGN V +R P     ITEVV++ V
Sbjct: 1   MGSRNLVVSYQQQPRGEAKQKAFAPADGRNRRVLQDIGNLVNDRKP-----ITEVVDSVV 55

Query: 58  GKE-----KSKV-------IDKPKKPESVIVISSDDESDESKPVNRKISRKEPNKSFTSV 105
            +       +KV       +++  +PE VIVISS+ E+++SKPV+R + RKE  K+ TS+
Sbjct: 56  ARNVRAPAATKVPAAAIKKVNEKHRPEDVIVISSE-ETEKSKPVSR-VPRKE-VKTLTSI 112

Query: 106 LTARSKAACGLINKPKDLISDIDVTDIDNELAVVEYVDDIYKFYKLTEDEGRVHDYMDAQ 165
           LTARSKAACG   KP+D + +ID  D++NELAVVEYVDD+Y+FYKLTE + RVHDY+  Q
Sbjct: 113 LTARSKAACG---KPEDTLVEIDAADVNNELAVVEYVDDMYEFYKLTEVDSRVHDYLQFQ 169

Query: 166 PEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLI 225
           P+INAKMRSILVDWL +VHRKF LMPETLYLT++IVDRFL+ + + R+ELQLVGIS+MLI
Sbjct: 170 PDINAKMRSILVDWLIDVHRKFLLMPETLYLTINIVDRFLALKLVPRRELQLVGISSMLI 229

Query: 226 ACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASV 285
           ACKYEEIWAPEVNDFVRISD+AY+REQVLA EK IL KLEW+LTVPTPYVFLVRYIKAS+
Sbjct: 230 ACKYEEIWAPEVNDFVRISDNAYIREQVLAMEKEILGKLEWYLTVPTPYVFLVRYIKASI 289

Query: 286 TSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGY 345
            SD+E EN+VFFL+ELG MQYP +V Y PS IAASAVYAARCTL+K PFWTETLKHHTGY
Sbjct: 290 PSDEETENLVFFLSELGLMQYPVVVKYGPSKIAASAVYAARCTLDKIPFWTETLKHHTGY 349

Query: 346 SEDQLRNCAKLLVKFHSAAAESKLKAVYKKFSSLDCGAVSLLKPAKSLLS 395
           +ED LR+CAKLLV FH+AAAESKLKAVYKKFSS D GAV+LL PA+SL S
Sbjct: 350 TEDMLRDCAKLLVHFHTAAAESKLKAVYKKFSSADRGAVALLTPARSLSS 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|89111295|dbj|BAE80322.1| cyclin B [Camellia sinensis] Back     alignment and taxonomy information
>gi|351724223|ref|NP_001237818.1| mitotic cyclin b1-type [Glycine max] gi|857399|dbj|BAA09467.1| mitotic cyclin b1-type [Glycine max] Back     alignment and taxonomy information
>gi|357493825|ref|XP_003617201.1| Cyclin [Medicago truncatula] gi|355518536|gb|AET00160.1| Cyclin [Medicago truncatula] Back     alignment and taxonomy information
>gi|255564474|ref|XP_002523233.1| cyclin B, putative [Ricinus communis] gi|223537529|gb|EEF39154.1| cyclin B, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|84579361|dbj|BAE72069.1| Cyclin B1-1 [Daucus carota] Back     alignment and taxonomy information
>gi|22830757|dbj|BAC15746.1| B1 type cyclin [Daucus carota] Back     alignment and taxonomy information
>gi|356501386|ref|XP_003519506.1| PREDICTED: G2/mitotic-specific cyclin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|6093215|emb|CAB58998.1| CYCB1-1 protein [Petunia x hybrida] Back     alignment and taxonomy information
>gi|7271222|emb|CAB81558.1| cyclin B1 [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
TAIR|locus:2043818387 CYCB1;4 "Cyclin B1;4" [Arabido 0.939 0.958 0.568 7.2e-107
TAIR|locus:2160722445 CYC1BAT [Arabidopsis thaliana 0.772 0.685 0.615 4.1e-102
TAIR|locus:2126377428 CYCB1;1 "CYCLIN B1;1" [Arabido 0.875 0.808 0.546 1.6e-98
TAIR|locus:2080717414 CYCB1;3 "CYCLIN B1;3" [Arabido 0.754 0.719 0.591 4.5e-91
TAIR|locus:2030482429 CYCB2;3 "Cyclin B2;3" [Arabido 0.693 0.638 0.473 1.4e-66
TAIR|locus:2057243429 CYCB2;1 "Cyclin B2;1" [Arabido 0.683 0.629 0.479 2.6e-63
TAIR|locus:2127948429 CYCB2;2 "Cyclin B2;2" [Arabido 0.658 0.606 0.494 1.8e-62
TAIR|locus:2014574431 CYCB2;4 "CYCLIN B2;4" [Arabido 0.688 0.631 0.460 4.8e-62
DICTYBASE|DDB_G0275493436 cycB "G2/M-specific cyclinB" [ 0.635 0.575 0.423 1.7e-50
ASPGD|ASPL0000015503478 nimE [Emericella nidulans (tax 0.648 0.535 0.393 7.7e-48
TAIR|locus:2043818 CYCB1;4 "Cyclin B1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
 Identities = 223/392 (56%), Positives = 277/392 (70%)

Query:     1 MASRAV--LP-QNQLKGEVKQKNVLADGR-GRRVLQDIGNFVTERAPQGKKSITEVVNAA 56
             MAS  V  LP Q  + GE+K KNV   GR  R+VL DIGN VT R            + A
Sbjct:     1 MASSRVSDLPHQRGIAGEIKPKNVAGHGRQNRKVLGDIGNLVTGR------------DVA 48

Query:    57 VGKEKSKVIDKPKKPXXXXXXXXXXXXXXX-KPVNRKISRKEPNKSFTSVLTARSKAACG 115
              GK+ +K   +P++                 KP   + +     K+FT+ L ARSKAA G
Sbjct:    49 TGKDVAKKAKQPQQQTKAEVIVISPDENEKCKPHFSRRTHIRGTKTFTATLRARSKAASG 108

Query:   116 LINKPKDLISDIDVTDIDNELAVVEYVDDIYKFYKLTEDEGRVHDYMDAQPEINAKMRSI 175
             L    KD + DID  D +NELA VEYV+DI+KFY+  E+EG + DY+ +QPEIN KMRSI
Sbjct:   109 L----KDAVIDIDAVDANNELAAVEYVEDIFKFYRTVEEEGGIKDYIGSQPEINEKMRSI 164

Query:   176 LVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAP 235
             L+DWL +VHRKFELMPETLYLT+++VDRFLS   + R+ELQL+G+ AMLIACKYEEIWAP
Sbjct:   165 LIDWLVDVHRKFELMPETLYLTINLVDRFLSLTMVHRRELQLLGLGAMLIACKYEEIWAP 224

Query:   236 EVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMV 295
             EVNDFV ISD+AY R+QVLA EK+IL ++EW++TVPTPYVFL RY+KA+V  D EME +V
Sbjct:   225 EVNDFVCISDNAYNRKQVLAMEKSILGQVEWYITVPTPYVFLARYVKAAVPCDAEMEKLV 284

Query:   296 FFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAK 355
             F+LAELG MQYP +VL  PSM+AASAVYAAR  L K PFWTETLKHHTGYSED++   AK
Sbjct:   285 FYLAELGLMQYPIVVLNRPSMLAASAVYAARQILKKTPFWTETLKHHTGYSEDEIMEHAK 344

Query:   356 LLVKFHSAAAESKLKAVYKKFSSLDCGAVSLL 387
             +L+K   +A+ESKL AV+KK+S  +   V+LL
Sbjct:   345 MLMKLRDSASESKLIAVFKKYSVSENAEVALL 376
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
GO:0010440 "stomatal lineage progression" evidence=RCA
TAIR|locus:2160722 CYC1BAT [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126377 CYCB1;1 "CYCLIN B1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080717 CYCB1;3 "CYCLIN B1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030482 CYCB2;3 "Cyclin B2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057243 CYCB2;1 "Cyclin B2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127948 CYCB2;2 "Cyclin B2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014574 CYCB2;4 "CYCLIN B2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275493 cycB "G2/M-specific cyclinB" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000015503 nimE [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P34801CCN2_ANTMANo assigned EC number0.52180.97970.8775N/Ano
P34800CCN1_ANTMANo assigned EC number0.52230.98980.8266N/Ano
O48790CCB14_ARATHNo assigned EC number0.57650.93920.9586yesno
P29332CCNB2_CHICKNo assigned EC number0.35070.88350.8746yesno
Q0JIF2CCB11_ORYSJNo assigned EC number0.52400.96700.8507yesno
O77689CCNB2_BOVINNo assigned EC number0.34630.84050.8341yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CYCB1-4
cyclin (402 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 1e-59
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 5e-54
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 3e-44
cd0004388 cd00043, CYCLIN, Cyclin box fold 8e-21
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 6e-17
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 2e-16
cd0004388 cd00043, CYCLIN, Cyclin box fold 8e-16
COG5333297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 5e-04
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score =  188 bits (481), Expect = 1e-59
 Identities = 70/127 (55%), Positives = 95/127 (74%), Gaps = 1/127 (0%)

Query: 144 DIYKFYKLTEDEGRV-HDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVD 202
           DIY + +  E+E R   DY+D QP+IN KMR+IL+DWL EVH +F+L+PETLYL V+ +D
Sbjct: 1   DIYAYLRELEEEDRPPPDYLDQQPDINPKMRAILIDWLVEVHEEFKLLPETLYLAVNYLD 60

Query: 203 RFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILR 262
           RFLSK+ + R +LQLVG++ +LIA KYEEI+ P V DFV I+D+AY +E++L  E  IL 
Sbjct: 61  RFLSKQPVPRTKLQLVGVTCLLIAAKYEEIYPPSVEDFVYITDNAYTKEEILRMELLILS 120

Query: 263 KLEWHLT 269
            L W L+
Sbjct: 121 TLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 395
KOG0653391 consensus Cyclin B and related kinase-activating p 100.0
COG5024440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.94
TIGR00569305 ccl1 cyclin ccl1. University). 99.9
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.88
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 99.85
KOG0835 367 consensus Cyclin L [General function prediction on 99.8
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.77
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.73
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.58
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.55
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.49
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.34
KOG1597308 consensus Transcription initiation factor TFIIB [T 99.18
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.09
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.79
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.76
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.5
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 97.99
KOG1598 521 consensus Transcription initiation factor TFIIIB, 97.22
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 96.66
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 96.08
KOG1674218 consensus Cyclin [General function prediction only 95.35
PRK00423310 tfb transcription initiation factor IIB; Reviewed 94.72
KOG1675343 consensus Predicted cyclin [General function predi 93.28
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 91.41
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 89.87
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 84.59
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 80.15
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=9e-53  Score=426.20  Aligned_cols=283  Identities=46%  Similarity=0.670  Sum_probs=260.4

Q ss_pred             hhhhhhhhhhhcccCCCCCCccCCCCCCCCCcccccccHHHHHHHHHHHHhccCCCCccccCCcCCHHhHHHHHHHHHHH
Q 016078          104 SVLTARSKAACGLINKPKDLISDIDVTDIDNELAVVEYVDDIYKFYKLTEDEGRVHDYMDAQPEINAKMRSILVDWLTEV  183 (395)
Q Consensus       104 s~l~~~s~~~~~~~~~~~~~~~diD~~d~~n~~~~~eY~~dI~~~l~~~E~~~~~~~yl~~q~~i~~~mR~~lvdWL~ev  183 (395)
                      ++....+...|+....   .+.|+|..|..|+++++||++|||.||+..|.+..|..|+..|++++.+||.++||||++|
T Consensus        92 ~~~~~~~~~~~~~~~~---~~~dl~~~d~~~~~~~~ey~~di~~~l~~~e~~~~p~~~~~~~~e~~~~mR~iLvdwlvev  168 (391)
T KOG0653|consen   92 SVLESTSKLASGLSDL---SILDLDSEDKSDPSMIVEYVQDIFEYLRQLELEFLPLSYDISQSEIRAKMRAILVDWLVEV  168 (391)
T ss_pred             ccchhhhhhhcccccc---CccCcchhcccCcHHHHHHHHHHHHHHHHHHHhhCchhhhcccccccHHHHHHHHHHHHHh
Confidence            6677777888887644   5789999999999999999999999999999877787888999999999999999999999


Q ss_pred             HHHcCCChHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH-HhhccccccCCChhhHHHhccccccHHHHHHHHHHHHH
Q 016078          184 HRKFELMPETLYLTVHIVDRFLSKETIQRKELQLVGISAML-IACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILR  262 (395)
Q Consensus       184 ~~~f~L~~eTl~lAV~llDRfLs~~~v~~~~lqLvgitcL~-IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~  262 (395)
                      |.+|+|.+|||||||+++||||+...|++.++||||++||| |||||||+++|.+.||++++|++||.+||++||+.||+
T Consensus       169 h~~F~L~~ETL~LaVnliDRfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv~isd~~~s~~~il~mE~~il~  248 (391)
T KOG0653|consen  169 HEKFGLSPETLYLAVNLIDRFLSKVKVPLKKLQLVGVSALLSIACKYEEISLPSVEDLVLITDGAYSREEILRMEKYILN  248 (391)
T ss_pred             hhhcCcCHHHHHHHHHHHHHHHHHhcccHHHhhHHhHHHHHHHHHhhhhccCCccceeEeeeCCccchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999977 99999999999999999999999999999999999999


Q ss_pred             hcCccccccChHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchhhhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHh
Q 016078          263 KLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHH  342 (395)
Q Consensus       263 ~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~la~~l~El~L~d~~~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~  342 (395)
                      +|+|++++|||+.||++|+++.. .+.+.+.+++|++|++++|++++. ++||.+|+|++++++.+......|+.++.+|
T Consensus       249 ~L~f~l~~p~~~~FLrr~~ka~~-~d~~~~~~~k~~~El~l~d~~~~~-~~~s~~aaa~~~~~~~~~~~~~~w~~~~~~~  326 (391)
T KOG0653|consen  249 VLEFDLSVPTPLSFLRRFLKAAD-YDIKTRTLVKYLLELSLCDYSMLS-IPPSSSAAASFTLALRMLSKGDVWSPTLEHY  326 (391)
T ss_pred             ccCeeecCCchHHHHHHHHHhhh-cchhHHHHHHHHHHHHHhhhHHhc-cCcHHHHHHHHHHHHHHhccCCccCCCCeec
Confidence            99999999999999999999954 688999999999999999999999 9999999999999999998876799999999


Q ss_pred             hCCCHHHHHHHHHHHHHHHhhcccc-chHH-HHHhhCCCCCCcee----ecCCCC
Q 016078          343 TGYSEDQLRNCAKLLVKFHSAAAES-KLKA-VYKKFSSLDCGAVS----LLKPAK  391 (395)
Q Consensus       343 tg~s~~~L~~c~~~L~~~~~~~~~~-~~~~-v~~KYs~~~~~~Va----~~~~~~  391 (395)
                      +||++.++.+|.+.+..++...... ..+. +++||+++.|+.++    ..+.+.
T Consensus       327 sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ky~~~~~~~~~~~~~~~~~~~  381 (391)
T KOG0653|consen  327 SGYSESYLFECARSLSALSLSSLQNPSLRASVLNKYNSSKFLPASPHVWILEKIT  381 (391)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHhcccchhHHHHHHHhcccccchhhhhcceecccc
Confidence            9999999999999999866554433 4554 99999999999999    555543

>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1675 consensus Predicted cyclin [General function prediction only] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
4bco_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 1e-41
2g9x_B262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 2e-41
1vin_A268 Bovine Cyclin A3 Length = 268 2e-41
3dog_B264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 2e-41
1vyw_B265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 2e-41
3ddq_B269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 2e-41
3ddp_B268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 2e-41
3bht_B262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 2e-41
1ogu_B260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 2e-41
2x1n_B261 Truncation And Optimisation Of Peptide Inhibitors O 3e-41
1jst_B258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 3e-41
1qmz_B259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 3e-41
1fin_B260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 3e-41
3qhr_B261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 3e-41
1e9h_B261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 3e-41
4i3z_B257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 3e-41
4ii5_B258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 4e-41
3f5x_B256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 5e-41
4bcq_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 1e-40
4bcq_D262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 3e-40
2jgz_B260 Crystal Structure Of Phospho-Cdk2 In Complex With C 8e-39
2b9r_A269 Crystal Structure Of Human Cyclin B1 Length = 269 2e-38
1w98_B283 The Structural Basis Of Cdk2 Activation By Cyclin E 1e-20
3g33_B306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 1e-12
2w9z_A257 Crystal Structure Of Cdk4 In Complex With A D-Type 7e-09
2w96_A271 Crystal Structure Of Cdk4 In Complex With A D-Type 8e-09
1jow_A254 Crystal Structure Of A Complex Of Human Cdk6 And A 1e-08
1bu2_A229 X-Ray Structure Of A Viral Cyclin From Herpesvirus 2e-08
1g3n_C257 Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Com 2e-04
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure 
Iteration: 1

 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/257 (37%), Positives = 153/257 (59%), Gaps = 2/257 (0%)
Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
           V +Y +DI+ + +  E + +    YM  QP+I   MR+ILVDWL EV  +++L  ETL+L
Sbjct: 5   VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 64
Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
            V+ +DRFLS  ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D  Y ++QVL  
Sbjct: 65  AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 124
Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
           E  +L+ L + L  PT   FL +Y      ++ ++E++  FL EL  +     + Y PS+
Sbjct: 125 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 184
Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
           IAA+A + A  T+     W E+L   TGY+ + L+ C   L + +  A +   +++ +K+
Sbjct: 185 IAAAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 243
Query: 377 SSLDCGAVSLLKPAKSL 393
            +     VSLL P ++L
Sbjct: 244 KNSKYHGVSLLNPPETL 260
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 254 Back     alignment and structure
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri Length = 229 Back     alignment and structure
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex Length = 257 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 1e-131
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 1e-121
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 1e-111
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 1e-108
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 1e-108
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 1e-106
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 2e-95
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 1e-91
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 1e-28
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 7e-17
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 1e-15
2ivx_A257 Cyclin-T2; transcription regulation, cell division 3e-14
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 5e-14
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
 Score =  376 bits (967), Expect = e-131
 Identities = 95/257 (36%), Positives = 152/257 (59%), Gaps = 2/257 (0%)

Query: 138 VVEYVDDIYKFYKLTEDEGRVH-DYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYL 196
           V +Y +DI+ + +  E + +    YM  QP+I   MR+ILVDWL EV  +++L  ETL+L
Sbjct: 3   VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHL 62

Query: 197 TVHIVDRFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAA 256
            V+ +DRFLS  ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D  Y ++QVL  
Sbjct: 63  AVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRM 122

Query: 257 EKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVFFLAELGQMQYPTIVLYCPSM 316
           E  +L+ L + L  PT   FL +Y      ++ ++E++  FL EL  +     + Y PS+
Sbjct: 123 EHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSV 182

Query: 317 IAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKKF 376
           IA +A + A  T+     W E+L   TGY+ + L+ C   L + +  A +   +++ +K+
Sbjct: 183 IAGAAFHLALYTVTGQS-WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 241

Query: 377 SSLDCGAVSLLKPAKSL 393
            +     VSLL P ++L
Sbjct: 242 KNSKYHGVSLLNPPETL 258
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 100.0
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.96
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.92
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.77
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.39
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.33
1ais_B200 TFB TFIIB, protein (transcription initiation facto 96.71
1c9b_A207 General transcription factor IIB; protein-DNA comp 95.21
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 89.45
2ivx_A257 Cyclin-T2; transcription regulation, cell division 88.58
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 88.31
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 87.17
2b9r_A 269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 87.1
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 83.88
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 83.25
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 83.25
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 82.62
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 81.8
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 81.69
3rgf_B 285 Cyclin-C; protein kinase complex, transferase,tran 81.58
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 80.72
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
Probab=100.00  E-value=5.1e-59  Score=446.46  Aligned_cols=254  Identities=37%  Similarity=0.617  Sum_probs=243.3

Q ss_pred             ccccHHHHHHHHHHHHhccCC-CCccccCCcCCHHhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcccccchhhH
Q 016078          138 VVEYVDDIYKFYKLTEDEGRV-HDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKETIQRKELQ  216 (395)
Q Consensus       138 ~~eY~~dI~~~l~~~E~~~~~-~~yl~~q~~i~~~mR~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~~v~~~~lq  216 (395)
                      |.||++|||+||+..|.++.| ++||..|++|++.||.+++|||++||.+|+|+++|+|+|++|||||++...+.+.++|
T Consensus         3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lq   82 (260)
T 2cch_B            3 VPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQ   82 (260)
T ss_dssp             CCTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             hHhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHh
Confidence            789999999999999999999 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccCCChhhHHHhccccccHHHHHHHHHHHHHhcCccccccChHHHHHHHHHHhcCCcHHHHHHHH
Q 016078          217 LVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLTVPTPYVFLVRYIKASVTSDKEMENMVF  296 (395)
Q Consensus       217 LvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~la~  296 (395)
                      |+|+||||||||+||.++|++.||+.++++.|++++|++||+.||++|+|++++|||++||.+|++.....+.++..+|+
T Consensus        83 lv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~  162 (260)
T 2cch_B           83 LVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAM  162 (260)
T ss_dssp             HHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999984333448999999


Q ss_pred             HHHHHhhcchh-hhccCChHHHHHHHHHHHHHHhCCCCCchHHHHHhhCCCHHHHHHHHHHHHHHHhhccccchHHHHHh
Q 016078          297 FLAELGQMQYP-TIVLYCPSMIAASAVYAARCTLNKNPFWTETLKHHTGYSEDQLRNCAKLLVKFHSAAAESKLKAVYKK  375 (395)
Q Consensus       297 ~l~El~L~d~~-~~~~~~PS~IAaaal~lA~~~l~~~~~W~~~L~~~tg~s~~~L~~c~~~L~~~~~~~~~~~~~~v~~K  375 (395)
                      +++|++++|+. ++. |+||.||+||+++|+..++. +.|++.|.+++|+++++|.+|++.|..++.+.+..++++|++|
T Consensus       163 ~l~e~sl~~~~~~~~-~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~~i~~K  240 (260)
T 2cch_B          163 FLGELSLIDADPYLK-YLPSVIAGAAFHLALYTVTG-QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREK  240 (260)
T ss_dssp             HHHHHHHHCHHHHTT-SCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCCHHHHH
T ss_pred             HHHHHHHHhHHHHhC-CCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            99999999999 888 99999999999999999986 6799999999999999999999999999988888899999999


Q ss_pred             hCCCCCCceeecCCCCcc
Q 016078          376 FSSLDCGAVSLLKPAKSL  393 (395)
Q Consensus       376 Ys~~~~~~Va~~~~~~~~  393 (395)
                      |++++|+.||.+||++.+
T Consensus       241 y~~~~~~~vs~~~~~~~~  258 (260)
T 2cch_B          241 YKNSKYHGVSLLNPPETL  258 (260)
T ss_dssp             HTSGGGTTGGGSCCCSCC
T ss_pred             HCcccccceeCCCCcccC
Confidence            999999999999999865
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 395
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 8e-45
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 5e-44
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 3e-43
d2cchb2124 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [T 4e-43
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 6e-41
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 8e-40
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 2e-31
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 6e-25
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 5e-24
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin A
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  149 bits (377), Expect = 8e-45
 Identities = 58/127 (45%), Positives = 85/127 (66%), Gaps = 1/127 (0%)

Query: 144 DIYKFYKLTEDEGRV-HDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVD 202
           DI+ + +  E + +    YM  QP+I   MR+ILVDWL EV  +++L  ETL+L V+ +D
Sbjct: 1   DIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 60

Query: 203 RFLSKETIQRKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILR 262
           RFLS  ++ R +LQLVG +AML+A K+EEI+ PEV +FV I+D  Y ++QVL  E  +L+
Sbjct: 61  RFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLK 120

Query: 263 KLEWHLT 269
            L + L 
Sbjct: 121 VLTFDLA 127
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 124 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 100.0
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 100.0
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.98
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.97
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.94
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.82
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.82
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.77
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 98.37
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.36
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.2
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.97
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.91
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.81
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.81
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 97.5
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.44
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.11
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 96.93
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 96.88
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.93
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 91.46
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 87.85
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 85.36
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 81.95
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 80.67
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-35  Score=255.14  Aligned_cols=136  Identities=31%  Similarity=0.617  Sum_probs=130.0

Q ss_pred             CcccccccHHHHHHHHHHHHhccCC-CCccccCCcCCHHhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcc-ccc
Q 016078          134 NELAVVEYVDDIYKFYKLTEDEGRV-HDYMDAQPEINAKMRSILVDWLTEVHRKFELMPETLYLTVHIVDRFLSKE-TIQ  211 (395)
Q Consensus       134 n~~~~~eY~~dI~~~l~~~E~~~~~-~~yl~~q~~i~~~mR~~lvdWL~ev~~~f~L~~eTl~lAV~llDRfLs~~-~v~  211 (395)
                      .|..+.+|.+|||.+|...|..+.+ ++|++.|++++++||.++||||++++..|+++++|+|+||+||||||+.. .++
T Consensus         3 ~p~~~~~~~~dI~~~l~~~E~~~~~~~~~l~~q~~i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~~~~v~   82 (140)
T d1w98b2           3 LPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVV   82 (140)
T ss_dssp             SCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             CccccccCHHHHHHHHHHHHHhhCCChHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhcccccc
Confidence            4667889999999999999999887 78999999999999999999999999999999999999999999999855 689


Q ss_pred             chhhHHHHHHHHHHhhccccccCCChhhHHHhccccccHHHHHHHHHHHHHhcCcccc
Q 016078          212 RKELQLVGISAMLIACKYEEIWAPEVNDFVRISDSAYLREQVLAAEKAILRKLEWHLT  269 (395)
Q Consensus       212 ~~~lqLvgitcL~IAsK~EE~~~p~v~dlv~is~~~yt~~eIl~mE~~IL~~L~f~L~  269 (395)
                      ++++||+|+||||||||+||..+|.+.+++.++++.||.++|.+||+.||++|+|+|+
T Consensus        83 ~~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~~~t~~ei~~mE~~IL~~L~~~Ln  140 (140)
T d1w98b2          83 KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS  140 (140)
T ss_dssp             GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHCCCcCC
Confidence            9999999999999999999999999999999999999999999999999999999985
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure