Citrus Sinensis ID: 016083
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 395 | ||||||
| 225429805 | 391 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 1.0 | 0.741 | 0.0 | |
| 255574113 | 379 | conserved hypothetical protein [Ricinus | 0.951 | 0.992 | 0.711 | 1e-163 | |
| 225446265 | 382 | PREDICTED: uncharacterized protein LOC10 | 0.959 | 0.992 | 0.691 | 1e-162 | |
| 296090292 | 376 | unnamed protein product [Vitis vinifera] | 0.949 | 0.997 | 0.693 | 1e-160 | |
| 224090529 | 392 | predicted protein [Populus trichocarpa] | 0.989 | 0.997 | 0.654 | 1e-160 | |
| 356550390 | 393 | PREDICTED: uncharacterized protein LOC10 | 0.987 | 0.992 | 0.637 | 1e-159 | |
| 356562117 | 393 | PREDICTED: uncharacterized protein LOC10 | 0.987 | 0.992 | 0.642 | 1e-159 | |
| 449457189 | 390 | PREDICTED: uncharacterized protein LOC10 | 0.984 | 0.997 | 0.636 | 1e-157 | |
| 357479561 | 396 | hypothetical protein MTR_4g127550 [Medic | 0.992 | 0.989 | 0.632 | 1e-156 | |
| 388520347 | 396 | unknown [Medicago truncatula] | 0.992 | 0.989 | 0.632 | 1e-156 |
| >gi|225429805|ref|XP_002282865.1| PREDICTED: uncharacterized protein LOC100257774 [Vitis vinifera] gi|296081776|emb|CBI20781.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 293/395 (74%), Positives = 340/395 (86%), Gaps = 4/395 (1%)
Query: 1 MKTARAWKLGGIRDFQMMAGYRQQRPHLKRPIWIIAFVTFFIIFLTGVYVYPSGSGSLAS 60
MKTARAW+LG I+D +M+G RQ RPHLKRPIWII V+ I L G Y+YP S A+
Sbjct: 1 MKTARAWQLG-IKDMLIMSGSRQ-RPHLKRPIWIIVLVSLVSICLIGAYIYPPRSS--AA 56
Query: 61 CYFFSGRGCTMLEQLPATPTRELTDAENIAQVVFKEILNKPPVHSKNPKVAFMFLTPGNL 120
CY FS R C++ EQ P+RELTD E AQVV +EIL PPVHSKNPK+AFMFLTPG+L
Sbjct: 57 CYIFSSRDCSIYEQPIHVPSRELTDDETAAQVVIREILKTPPVHSKNPKIAFMFLTPGSL 116
Query: 121 PFENLWEKFFHGHEDRFSVYVHASSEKPMHVSRYFVGRDIRSEKVAWGRISMLDAEKRLL 180
PFE LW++FFHGHEDRF+VYVHASSEKP HVSRYF+GRDIRSEKV WG+ISM+DAEKRLL
Sbjct: 117 PFEKLWDRFFHGHEDRFTVYVHASSEKPAHVSRYFIGRDIRSEKVIWGKISMVDAEKRLL 176
Query: 181 AHALLDPDNQQFVLLSDSCIPLHNFDYVYNYLMYTNVSYVDCFEDPGPHGNGRYSEHMLP 240
HAL DP+NQ FVLLSDSC+PLHNFDYVYNYLM+TN+SY+DCFEDPGPHGNGRYS+HM+P
Sbjct: 177 GHALEDPNNQHFVLLSDSCVPLHNFDYVYNYLMFTNISYIDCFEDPGPHGNGRYSDHMMP 236
Query: 241 EVEKKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHM 300
EVE KDFRKG+QWF++KRQHA+I+MADSLYYTKFK YC+P M+GRNCYADEHYLPTLF+M
Sbjct: 237 EVEVKDFRKGAQWFSMKRQHAIIVMADSLYYTKFKLYCRPGMDGRNCYADEHYLPTLFNM 296
Query: 301 IDPAGIANWSVTHADWSEGKWHPKAYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMP 360
IDP GIANWSVTH DWSEGKWHPKAYR QD+S E L+++ AID ++H+TS+E+KK+ I P
Sbjct: 297 IDPTGIANWSVTHVDWSEGKWHPKAYRGQDVSYELLRNITAIDMSYHVTSNEKKKMMIQP 356
Query: 361 CMWNGMKRPCYLFARKFNPEALDKLVFLFVNYTTV 395
C+WNG+KRPCYLFARKF PEA D L+ LF NYTTV
Sbjct: 357 CLWNGVKRPCYLFARKFYPEAQDNLLHLFSNYTTV 391
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574113|ref|XP_002527972.1| conserved hypothetical protein [Ricinus communis] gi|223532598|gb|EEF34384.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|225446265|ref|XP_002267173.1| PREDICTED: uncharacterized protein LOC100262683 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|296090292|emb|CBI40111.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224090529|ref|XP_002309015.1| predicted protein [Populus trichocarpa] gi|222854991|gb|EEE92538.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356550390|ref|XP_003543570.1| PREDICTED: uncharacterized protein LOC100817202 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356562117|ref|XP_003549320.1| PREDICTED: uncharacterized protein LOC100784132 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449457189|ref|XP_004146331.1| PREDICTED: uncharacterized protein LOC101222732 [Cucumis sativus] gi|449516335|ref|XP_004165202.1| PREDICTED: uncharacterized LOC101222732 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357479561|ref|XP_003610066.1| hypothetical protein MTR_4g127550 [Medicago truncatula] gi|355511121|gb|AES92263.1| hypothetical protein MTR_4g127550 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|388520347|gb|AFK48235.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 395 | ||||||
| TAIR|locus:2128181 | 376 | AT4G31350 [Arabidopsis thalian | 0.939 | 0.986 | 0.654 | 3.2e-145 | |
| TAIR|locus:2059040 | 394 | AT2G19160 [Arabidopsis thalian | 0.989 | 0.992 | 0.569 | 1.3e-132 | |
| TAIR|locus:2126525 | 401 | AT4G30060 [Arabidopsis thalian | 0.987 | 0.972 | 0.581 | 5e-131 | |
| TAIR|locus:2117542 | 389 | AT4G25870 [Arabidopsis thalian | 0.921 | 0.935 | 0.568 | 3.6e-121 | |
| TAIR|locus:2165605 | 388 | AT5G57270 [Arabidopsis thalian | 0.939 | 0.956 | 0.564 | 3.2e-120 | |
| TAIR|locus:2012748 | 412 | AT1G10280 [Arabidopsis thalian | 0.706 | 0.677 | 0.444 | 8.8e-61 | |
| TAIR|locus:2181442 | 411 | AT5G16170 [Arabidopsis thalian | 0.665 | 0.639 | 0.457 | 1e-59 | |
| TAIR|locus:2180552 | 387 | AT5G25970 [Arabidopsis thalian | 0.564 | 0.576 | 0.508 | 1.2e-58 | |
| TAIR|locus:2181945 | 386 | AT5G11730 [Arabidopsis thalian | 0.739 | 0.756 | 0.431 | 2.5e-58 | |
| TAIR|locus:2094781 | 383 | AT3G21310 [Arabidopsis thalian | 0.688 | 0.710 | 0.429 | 1.7e-57 |
| TAIR|locus:2128181 AT4G31350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1419 (504.6 bits), Expect = 3.2e-145, P = 3.2e-145
Identities = 244/373 (65%), Positives = 303/373 (81%)
Query: 23 QQRPHLKRPIWIIAFVTFFIIFLTGVYVYPSGSGSLASCYFFSGRGCTMLEQLPATPTRE 82
+QRP K P WII V + + ++YP + S+A CY FSG GC + +Q PTRE
Sbjct: 5 RQRPPFKGPRWIITLVVLVTVVVITAFIYPPRN-SVA-CYMFSGPGCPLYQQFLFVPTRE 62
Query: 83 LTDAENIAQVVFKEILNKPPVHSKNPKVAFMFLTPGNLPFENLWEKFFHGHEDRFSVYVH 142
LTD+E AQVV EI+N P + NPK+AFMFLTPG LPFE LWE FF GHE++FSVYVH
Sbjct: 63 LTDSEAAAQVVMNEIMNLPQSKTANPKLAFMFLTPGTLPFEPLWEMFFRGHENKFSVYVH 122
Query: 143 ASSEKPMHVSRYFVGRDIRSEKVAWGRISMLDAEKRLLAHALLDPDNQQFVLLSDSCIPL 202
AS + P+H S YFVGRDI S KVAWG+ISM+DAE+RLLAHAL+DPDNQ F+LLSDSC+PL
Sbjct: 123 ASKKSPVHTSSYFVGRDIHSHKVAWGQISMVDAERRLLAHALVDPDNQHFILLSDSCVPL 182
Query: 203 HNFDYVYNYLMYTNVSYVDCFEDPGPHGNGRYSEHMLPEVEKKDFRKGSQWFTLKRQHAM 262
+F+Y+YN+L++ N+S++DCFEDPGPHG+GRYS+HMLPEVEKKDFRKGSQWF++KR+HA+
Sbjct: 183 FDFNYIYNHLIFANLSFIDCFEDPGPHGSGRYSQHMLPEVEKKDFRKGSQWFSMKRRHAI 242
Query: 263 IIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMIDPAGIANWSVTHADWSEGKWH 322
++MADSLYYTKFK YC+PNMEGRNCYADEHY PTLF+MIDP GIANWSVTH DWSEGKWH
Sbjct: 243 VVMADSLYYTKFKLYCRPNMEGRNCYADEHYFPTLFNMIDPDGIANWSVTHVDWSEGKWH 302
Query: 323 PKAYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMPCMWNGMKRPCYLFARKFNPEAL 382
PK Y A+DI+ ++ + +I +H+TSD +K T+ PC+W G +RPCYLFARKFNPE L
Sbjct: 303 PKLYNARDITPYLIRKIKSIQLAYHVTSDLKKVTTVKPCLWKGEQRPCYLFARKFNPETL 362
Query: 383 DKLVFLFVNYTTV 395
D+L++LF NYT++
Sbjct: 363 DRLMYLFPNYTSL 375
|
|
| TAIR|locus:2059040 AT2G19160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2126525 AT4G30060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2117542 AT4G25870 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2165605 AT5G57270 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2012748 AT1G10280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2181442 AT5G16170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2180552 AT5G25970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2181945 AT5G11730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2094781 AT3G21310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00032346001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (391 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 395 | |||
| pfam02485 | 242 | pfam02485, Branch, Core-2/I-Branching enzyme | 5e-91 |
| >gnl|CDD|217062 pfam02485, Branch, Core-2/I-Branching enzyme | Back alignment and domain information |
|---|
Score = 273 bits (701), Expect = 5e-91
Identities = 114/248 (45%), Positives = 145/248 (58%), Gaps = 23/248 (9%)
Query: 110 VAFMFLT-PGNLPFENLWEKFFHGHEDRFSVYVHASSEKPMH------VSRYFVGRDI-R 161
+AFMFL G+LPF LW +FF+ ++ + +YV A S S +F R I +
Sbjct: 1 IAFMFLVYKGDLPFLPLWLRFFYHPQNLYCIYVDAKSPSEFKERLRALASCFFNVRVIPK 60
Query: 162 SEKVAWGRISMLDAEKRLLAHALL-DPDNQQFVLLSDSCIPLHNFDYVYNYLMYTN--VS 218
SE V WG SM+DAE+RLLA+ LL DP FVLLS+S IPL FD +Y YL N S
Sbjct: 61 SEPVTWGGHSMVDAERRLLANLLLLDPSWDYFVLLSESDIPLKTFDELYRYLSSLNGNNS 120
Query: 219 YVDCFEDPGPHGNGRYSEHMLPEVEKKD----FRKGSQWFTLKRQHAMIIMADSLYYTKF 274
+V+ F+DPG G GRY+ MLPE++ D +RKGSQWF L R A +++D+LYY F
Sbjct: 121 FVESFDDPGWKGRGRYNPRMLPEIKLSDLPLKWRKGSQWFVLSRAFAEYVVSDNLYYPLF 180
Query: 275 KHYCKPNMEGRNCYADEHYLPTLFHMI--DPAGIANWSVTHADWSEGKWHPKAYRAQDIS 332
K+YC CY DEHY PTL M P N ++T+ DWS G HPK YR DI
Sbjct: 181 KYYCN------TCYPDEHYFPTLLGMPGHFPNTCVNRTLTYVDWSRGGCHPKTYRPCDIG 234
Query: 333 SEFLKSLA 340
E LK +
Sbjct: 235 PEDLKRIR 242
|
This is a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme and core-2 branching enzyme . I-branching enzyme is responsible for the production of the blood group I-antigen during embryonic development. Core-2 branching enzyme forms crucial side-chain branches in O-glycans. Length = 242 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 395 | |||
| PF02485 | 244 | Branch: Core-2/I-Branching enzyme; InterPro: IPR00 | 100.0 | |
| PLN03183 | 421 | acetylglucosaminyltransferase family protein; Prov | 100.0 | |
| KOG0799 | 439 | consensus Branching enzyme [Carbohydrate transport | 99.9 |
| >PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-46 Score=351.86 Aligned_cols=223 Identities=28% Similarity=0.467 Sum_probs=146.0
Q ss_pred EEEEEEcCC-CCChHHHHHHHhhccCCCceEEEEeCCCCCC------Cc--cceeeeeccC-CCccccCcchHHHHHHHH
Q 016083 110 VAFMFLTPG-NLPFENLWEKFFHGHEDRFSVYVHASSEKPM------HV--SRYFVGRDIR-SEKVAWGRISMLDAEKRL 179 (395)
Q Consensus 110 iAfLfLt~~-~l~l~~Lwe~ff~~~~~~~sIYVHvD~k~~~------~~--s~vF~~r~Ip-s~~V~WG~~SlV~AelrL 179 (395)
||||||+|+ +.++..+|.+++ +++.+.+|||+|+|++. .. ......+.++ +++|.||++|||+||++|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l--~~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~~v~WG~~S~v~A~l~l 78 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLL--YHPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRVDVRWGGFSLVEATLNL 78 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH----TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSHHHHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHh--cCCCCEEEEEEcCCCChHHHHHHHHhcccCCceeecccccccccCCccHHHHHHHH
Confidence 799999976 766544555554 35677888999999652 10 1111122344 689999999999999999
Q ss_pred HHHHhc-CCCCCEEEEecCCCccCCChHHHHHHHhcC--CccceeeccCCCCCCCCCcccc----cCccccccccccccc
Q 016083 180 LAHALL-DPDNQQFVLLSDSCIPLHNFDYVYNYLMYT--NVSYVDCFEDPGPHGNGRYSEH----MLPEVEKKDFRKGSQ 252 (395)
Q Consensus 180 L~~AL~-d~~n~yfvLLSgsdiPL~s~~~I~~~L~~~--~~sFIe~~~~p~p~~~~Ry~~~----mlp~i~~~~~rkGSQ 252 (395)
|++|++ +++|+|||||||+|+||+++++|++||+.. +.+|+++...+++...+||... +.+.++..++++|||
T Consensus 79 l~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~GSq 158 (244)
T PF02485_consen 79 LREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLYKGSQ 158 (244)
T ss_dssp HHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--EEE-S
T ss_pred HHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccccccccccccce
Confidence 999999 789999999999999999999999999885 5788999877654333566543 233444458999999
Q ss_pred eeeecHHHHHHHHhChHHHHHHHhhccCCCCCCccccCccchhhhhccc--CCCCCCCCceEEEeCC-CCCCCCcccccC
Q 016083 253 WFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMI--DPAGIANWSVTHADWS-EGKWHPKAYRAQ 329 (395)
Q Consensus 253 WfsLtR~~a~~Iv~d~~~~~~F~~~c~~~~~~~tc~pDE~yf~TlL~~~--~~~~i~n~~lryIDWs-~g~~hP~~~~~~ 329 (395)
||+|||++|++|++|....+.|+.+|+ ++++|||+||||||.+. ..+.+.|+++|||||+ +|++||++++..
T Consensus 159 W~~Ltr~~v~~il~~~~~~~~~~~~~~-----~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i~W~~~~~~~p~~~~~~ 233 (244)
T PF02485_consen 159 WFSLTRDFVEYILDDPNYRPKLKKYFR-----FSLCPDESFFQTLLNNSGHFKDTIVNRNLRYIDWSRRGGCHPKTLTIC 233 (244)
T ss_dssp --EEEHHHHHHHHH-HHHHHHHHHHT------TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE-BTGT-SS---SSEEE
T ss_pred eeEeeHHHHHHhhhhHHHHHHHHHhhc-----CccCcchhhHHHhhcccchhcccccCCCEEEEECCCCCCCCCCeeeee
Confidence 999999999999999998889998885 47999999999999876 4578899999999999 788999999999
Q ss_pred CCCHHHHHHH
Q 016083 330 DISSEFLKSL 339 (395)
Q Consensus 330 Di~~e~L~~i 339 (395)
|++.+.|..|
T Consensus 234 ~~~~~d~~~~ 243 (244)
T PF02485_consen 234 DLGPEDLPWL 243 (244)
T ss_dssp E--GGGHHHH
T ss_pred eeCHHHHHhh
Confidence 9998877765
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B. |
| >PLN03183 acetylglucosaminyltransferase family protein; Provisional | Back alignment and domain information |
|---|
| >KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 395 | |||
| 2gak_A | 391 | Beta-1,6-N-acetylglucosaminyltransferase; glycopro | 1e-28 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 |
| >2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Length = 391 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 36/342 (10%), Positives = 95/342 (27%), Gaps = 46/342 (13%)
Query: 74 QLPATPTRELTDAENIAQVVFKEILNKPPVHSKNPKVAFMFLTPGNLP-FENLWEKFFHG 132
+ +T K I+ +A+ + + + L +
Sbjct: 50 RWTPHDYINMTRDCASFIRTRKYIVEPLTKEEVGFPIAYSIVVHHKIEMLDRLLRAIYMP 109
Query: 133 HEDRFSVYVHASSEKPMHVSRYFVGRDI-------RSEKVAWGRISMLDAEKRLLAHAL- 184
+ + ++V +E+ + + + E V + + + A+ +
Sbjct: 110 Q-NFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWTRVKADLNCMKDLYR 168
Query: 185 LDPDNQQFVLLSDSCIPLHNFDYVYNYL-MYTNVSYVDCFEDPGPHGNGRYSEH------ 237
++ + + + L P+ + L T + ++ + P +
Sbjct: 169 MNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYAVVDGK 228
Query: 238 -------MLPEVEKKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYAD 290
P K GS +F + R++ ++ + K + + D
Sbjct: 229 LTNTGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLEN-ENIQKLMEWAQ-----DTYSPD 282
Query: 291 EHYLPTLFHMIDPAG-IANWSVTHADWSEG-----KWHPKAYRAQDISSEFLKSLAAIDE 344
E T+ + + G + + KW + + S +
Sbjct: 283 EFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRS 342
Query: 345 TFHITSDEQKKVTIMPCMWNGMKRPCYLFARKFNPEALDKLV 386
+ + + M R +LFA KF+ + +
Sbjct: 343 VCVFGAGD----------LSWMLRQHHLFANKFDMDVDPFAI 374
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 395 | |||
| 2gak_A | 391 | Beta-1,6-N-acetylglucosaminyltransferase; glycopro | 100.0 |
| >2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-51 Score=415.38 Aligned_cols=244 Identities=14% Similarity=0.197 Sum_probs=196.3
Q ss_pred CCCcEEEEEEcCCCCChHHHHHHHhhc-cCCCceEEEEeCCCCCCC-------ccceeeeeccC--CCccccCcchHHHH
Q 016083 106 KNPKVAFMFLTPGNLPFENLWEKFFHG-HEDRFSVYVHASSEKPMH-------VSRYFVGRDIR--SEKVAWGRISMLDA 175 (395)
Q Consensus 106 ~~~KiAfLfLt~~~l~l~~Lwe~ff~~-~~~~~sIYVHvD~k~~~~-------~s~vF~~r~Ip--s~~V~WG~~SlV~A 175 (395)
..+|||||||+||+. +.|++++++ .++.+.||||+|++++.. ..+.|.+..|. +..|.||++|||+|
T Consensus 82 ~~~kiAflil~h~d~---~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~~~~~v~WGg~S~v~A 158 (391)
T 2gak_A 82 VGFPIAYSIVVHHKI---EMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWTRVKA 158 (391)
T ss_dssp HTSCEEEEEEECSCH---HHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECSSCCCCCTTSHHHHHH
T ss_pred cCCCEEEEEEecCCH---HHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEeccCcccccCCchHHHH
Confidence 358999999999976 577888875 467788999999998631 23345566653 68999999999999
Q ss_pred HHHHHHHHhcC-CCCCEEEEecCCCccCCChHHHHHHHhc-CCccceeeccCCCCCCCCCccc----------------c
Q 016083 176 EKRLLAHALLD-PDNQQFVLLSDSCIPLHNFDYVYNYLMY-TNVSYVDCFEDPGPHGNGRYSE----------------H 237 (395)
Q Consensus 176 elrLL~~AL~d-~~n~yfvLLSgsdiPL~s~~~I~~~L~~-~~~sFIe~~~~p~p~~~~Ry~~----------------~ 237 (395)
|++||++||++ .+|+|||||||+|+||+++++|++||+. .++|||++..+++.. .+|+.. +
T Consensus 159 ~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFIe~~~~~~~~-~~R~~~~~~~~~~~l~~~~~~k~ 237 (391)
T 2gak_A 159 DLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK-EERWKKRYAVVDGKLTNTGIVKA 237 (391)
T ss_dssp HHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBCCBEECCGGG-SHHHHEEEEEETTEEEEEEEECC
T ss_pred HHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCceeeccCCCccc-ccceEeeeeccccceeeeccccc
Confidence 99999999985 5999999999999999999999999997 899999999865432 223221 1
Q ss_pred cCccccccccccccceeeecHHHHHHHHhChHHHHHHHhhccCCCCCCccccCccchhhhhcccC-CCC----------C
Q 016083 238 MLPEVEKKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMID-PAG----------I 306 (395)
Q Consensus 238 mlp~i~~~~~rkGSQWfsLtR~~a~~Iv~d~~~~~~F~~~c~~~~~~~tc~pDE~yf~TlL~~~~-~~~----------i 306 (395)
++|. ..+|++|||||+|||++|++|++|.. .++|.++|+ ++|+|||||||||+.+.+ ++. .
T Consensus 238 ~~P~--~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k-----~t~~pDE~ffqTll~~~~~pg~~~~~~~~~~~~ 309 (391)
T 2gak_A 238 PPPL--KTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQ-----DTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSD 309 (391)
T ss_dssp CCSC--SSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHT-----TSSSGGGTHHHHHTTSTTSTTCCCSSGGGCBCT
T ss_pred CCcc--ccceecccceeEecHHHHHHHHhCCc-HHHHHHHHc-----CCcCCchhHHHHHhhccCCCCcccccccccccc
Confidence 2232 46899999999999999999999965 578888887 579999999999997753 322 2
Q ss_pred CCCceEEEeCC-------CCCCCCc----------ccccCCCCHHHHHHHhhccccccccccccccccccccccCCCCCC
Q 016083 307 ANWSVTHADWS-------EGKWHPK----------AYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMPCMWNGMKRP 369 (395)
Q Consensus 307 ~n~~lryIDWs-------~g~~hP~----------~~~~~Di~~e~L~~ir~~~~~~~~~~~~~~~~~~~~c~yng~~~~ 369 (395)
.|+++|||||+ +|++||. +|+.+|+ +.|++ +
T Consensus 310 ~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl-----~~l~~---------------------------s 357 (391)
T 2gak_A 310 MNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDL-----SWMLR---------------------------Q 357 (391)
T ss_dssp TTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGH-----HHHTT---------------------------S
T ss_pred ccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHH-----HHHHh---------------------------C
Confidence 47899999997 3556887 7888885 45654 2
Q ss_pred cceEEecCCcchHHHHHHhhhhcc
Q 016083 370 CYLFARKFNPEALDKLVFLFVNYT 393 (395)
Q Consensus 370 c~LFARKF~~~~~~~Ll~l~~~~~ 393 (395)
++||||||++++++.+++.++++.
T Consensus 358 ~~lFARKF~~~~d~~~l~~l~~~l 381 (391)
T 2gak_A 358 HHLFANKFDMDVDPFAIQCLDEHL 381 (391)
T ss_dssp CCSEEECCCTTTCHHHHHHHHHHH
T ss_pred CCceEEccCCccCHHHHHHHHHHH
Confidence 699999999999999999888653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00