Citrus Sinensis ID: 016083


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
MKTARAWKLGGIRDFQMMAGYRQQRPHLKRPIWIIAFVTFFIIFLTGVYVYPSGSGSLASCYFFSGRGCTMLEQLPATPTRELTDAENIAQVVFKEILNKPPVHSKNPKVAFMFLTPGNLPFENLWEKFFHGHEDRFSVYVHASSEKPMHVSRYFVGRDIRSEKVAWGRISMLDAEKRLLAHALLDPDNQQFVLLSDSCIPLHNFDYVYNYLMYTNVSYVDCFEDPGPHGNGRYSEHMLPEVEKKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMIDPAGIANWSVTHADWSEGKWHPKAYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMPCMWNGMKRPCYLFARKFNPEALDKLVFLFVNYTTV
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccEEEEEEcccccccHHHHHHHHccccccEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHcccccEEEcccccccccccccccccccccccccEEEccEEEEEHHHHHHHHHccccHHHHHHcccccccccccccccccHHHHHHcccccccccccEEEEEcccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccEEEccccHHHHHHHHHcccccccc
ccccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHEcccccccccccccccccccHHHccccccccccccHHHHHHHHHHccHcccccccccccEEEEEEEccccccHHHHHHHHHccccccEEEEEEccccccccccccEccccccccEEEcccccHHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHcccccHHHccccccccccccccccccccccHHHHccccEEEEEEHHHHHHHHHcHcHHHHHHHHccccccccccccccccccEEEEEcccccccccEEEEEEcccccccccccccccccHHHHHHHHccccEEEEEccccEEEEEcccccccccccHHHHHHHccHHHHHHHHHHccccccc
MKTARAWKLGGIRDFQMMAGYrqqrphlkrpiWIIAFVTFFIIFLTGvyvypsgsgslascyffsgrgctmleqlpatptreltdaENIAQVVFKEilnkppvhsknpkvafmfltpgnlpfenlWEKFfhghedrfsvyvhassekpmhvsryfvgrdirsEKVAWGRISMLDAEKRLLAHAlldpdnqqfvllsdsciplhnfdyvYNYLMYTNVSyvdcfedpgphgngrysehmlpevekkdfrkgsqWFTLKRQHAMIIMADSLYYTKFkhyckpnmegrncyadehylptlfhmidpagianwsvthadwsegkwhpkayraqdISSEFLKSLAAIDetfhitsdeqkkvtimpcmwngmkrpcylfaRKFNPEALDKLVFLFVNYTTV
mktarawklggirdfqMMAGYRQQRPHLKRPIWIIAFVTFFIIFLTGVYVYPSGSGSLASCYFFSGRGCTMLEQLPATPTRELTDAENIAQVVFKEILNKPPVHSKNPKVAFMFLTPGNLPFENLWEKFFHGHEDRFSVYvhassekpmhvsryfvgrdIRSEKVAWGRISMLDAEKRLLAHALLDPDNQQFVLLSDSCIPLHNFDYVYNYLMYTNVSYVDCFEDPGPHGNGRYSEHMLPEVEKKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMIDPAGIANWSVTHADWSEGKWHPKAYRAQDISSEFLKSLAAIDETfhitsdeqkkvTIMPCMWNGMKRPCYLFARKFNPEALDKLVFLFVNYTTV
MKTARAWKLGGIRDFQMMAGYRQQRPHLKRPIWIIAFVTFFIIFLTGVYVYPSGSGSLASCYFFSGRGCTMLEQLPATPTRELTDAENIAQVVFKEILNKPPVHSKNPKVAFMFLTPGNLPFENLWEKFFHGHEDRFSVYVHASSEKPMHVSRYFVGRDIRSEKVAWGRISMLDAEKRLLAHALLDPDNQQFVLLSDSCIPLHNFDYVYNYLMYTNVSYVDCFEDPGPHGNGRYSEHMLPEVEKKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMIDPAGIANWSVTHADWSEGKWHPKAYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMPCMWNGMKRPCYLFARKFNPEALDKLVFLFVNYTTV
*****AWKLGGIRDFQMMAGYRQQRPHLKRPIWIIAFVTFFIIFLTGVYVYPSGSGSLASCYFFSGRGCTMLEQLPATPTRELTDAENIAQVVFKEILNKPPVHSKNPKVAFMFLTPGNLPFENLWEKFFHGHEDRFSVYVHASSEKPMHVSRYFVGRDIRSEKVAWGRISMLDAEKRLLAHALLDPDNQQFVLLSDSCIPLHNFDYVYNYLMYTNVSYVDCFED*********************FRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMIDPAGIANWSVTHADWSEGKWHPKAYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMPCMWNGMKRPCYLFARKFNPEALDKLVFLFVNYT**
****R***LGGIRD*****************IWIIAFVTFFIIFLTGVYVYPSG**************CTMLEQLPATPTRELTDAENIAQVV****************VAFMFLTPGNLPFENLWEKFFHGHEDRFSVYVHASSEKPMHVSRYFVGRDIRSEKVAWGRISMLDAEKRLLAHALLDPDNQQFVLLSDSCIPLHNFDYVYNYLMYTNVSYVDCFEDPGPHGNGRYSEHMLPEVEKKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMIDPAGIANWSVTHADWSEGKWHPKAYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMPCMWNGMKRPCYLFARKFNPEALDKLVFLFVNY***
MKTARAWKLGGIRDFQMMAGYRQQRPHLKRPIWIIAFVTFFIIFLTGVYVYPSGSGSLASCYFFSGRGCTMLEQLPATPTRELTDAENIAQVVFKEILNKPPVHSKNPKVAFMFLTPGNLPFENLWEKFFHGHEDRFSVYVHASSEKPMHVSRYFVGRDIRSEKVAWGRISMLDAEKRLLAHALLDPDNQQFVLLSDSCIPLHNFDYVYNYLMYTNVSYVDCFEDPGPHGNGRYSEHMLPEVEKKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMIDPAGIANWSVTHADWSEGKWHPKAYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMPCMWNGMKRPCYLFARKFNPEALDKLVFLFVNYTTV
****R*WKLGGIRDFQMMAGYRQQRPHLKRPIWIIAFVTFFIIFLTGVYVYPSGSGSLASCYFFSGRGCTMLEQLPATPTRELTDAENIAQVVFKEILNKPPVHSKNPKVAFMFLTPGNLPFENLWEKFFHGHEDRFSVYVHASSEKPMHVSRYFVGRDIRSEKVAWGRISMLDAEKRLLAHALLDPDNQQFVLLSDSCIPLHNFDYVYNYLMYTNVSYVDCFEDPGPHGNGRYSEHMLPEVEKKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMIDPAGIANWSVTHADWSEGKWHPKAYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMPCMWNGMKRPCYLFARKFNPEALDKLVFLFVNYT**
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKTARAWKLGGIRDFQMMAGYRQQRPHLKRPIWIIAFVTFFIIFLTGVYVYPSGSGSLASCYFFSGRGCTMLEQLPATPTRELTDAENIAQVVFKEILNKPPVHSKNPKVAFMFLTPGNLPFENLWEKFFHGHEDRFSVYVHASSEKPMHVSRYFVGRDIRSEKVAWGRISMLDAEKRLLAHALLDPDNQQFVLLSDSCIPLHNFDYVYNYLMYTNVSYVDCFEDPGPHGNGRYSEHMLPEVEKKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMIDPAGIANWSVTHADWSEGKWHPKAYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMPCMWNGMKRPCYLFARKFNPEALDKLVFLFVNYTTV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
225429805391 PREDICTED: uncharacterized protein LOC10 0.989 1.0 0.741 0.0
255574113379 conserved hypothetical protein [Ricinus 0.951 0.992 0.711 1e-163
225446265382 PREDICTED: uncharacterized protein LOC10 0.959 0.992 0.691 1e-162
296090292376 unnamed protein product [Vitis vinifera] 0.949 0.997 0.693 1e-160
224090529392 predicted protein [Populus trichocarpa] 0.989 0.997 0.654 1e-160
356550390393 PREDICTED: uncharacterized protein LOC10 0.987 0.992 0.637 1e-159
356562117393 PREDICTED: uncharacterized protein LOC10 0.987 0.992 0.642 1e-159
449457189390 PREDICTED: uncharacterized protein LOC10 0.984 0.997 0.636 1e-157
357479561396 hypothetical protein MTR_4g127550 [Medic 0.992 0.989 0.632 1e-156
388520347396 unknown [Medicago truncatula] 0.992 0.989 0.632 1e-156
>gi|225429805|ref|XP_002282865.1| PREDICTED: uncharacterized protein LOC100257774 [Vitis vinifera] gi|296081776|emb|CBI20781.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 293/395 (74%), Positives = 340/395 (86%), Gaps = 4/395 (1%)

Query: 1   MKTARAWKLGGIRDFQMMAGYRQQRPHLKRPIWIIAFVTFFIIFLTGVYVYPSGSGSLAS 60
           MKTARAW+LG I+D  +M+G RQ RPHLKRPIWII  V+   I L G Y+YP  S   A+
Sbjct: 1   MKTARAWQLG-IKDMLIMSGSRQ-RPHLKRPIWIIVLVSLVSICLIGAYIYPPRSS--AA 56

Query: 61  CYFFSGRGCTMLEQLPATPTRELTDAENIAQVVFKEILNKPPVHSKNPKVAFMFLTPGNL 120
           CY FS R C++ EQ    P+RELTD E  AQVV +EIL  PPVHSKNPK+AFMFLTPG+L
Sbjct: 57  CYIFSSRDCSIYEQPIHVPSRELTDDETAAQVVIREILKTPPVHSKNPKIAFMFLTPGSL 116

Query: 121 PFENLWEKFFHGHEDRFSVYVHASSEKPMHVSRYFVGRDIRSEKVAWGRISMLDAEKRLL 180
           PFE LW++FFHGHEDRF+VYVHASSEKP HVSRYF+GRDIRSEKV WG+ISM+DAEKRLL
Sbjct: 117 PFEKLWDRFFHGHEDRFTVYVHASSEKPAHVSRYFIGRDIRSEKVIWGKISMVDAEKRLL 176

Query: 181 AHALLDPDNQQFVLLSDSCIPLHNFDYVYNYLMYTNVSYVDCFEDPGPHGNGRYSEHMLP 240
            HAL DP+NQ FVLLSDSC+PLHNFDYVYNYLM+TN+SY+DCFEDPGPHGNGRYS+HM+P
Sbjct: 177 GHALEDPNNQHFVLLSDSCVPLHNFDYVYNYLMFTNISYIDCFEDPGPHGNGRYSDHMMP 236

Query: 241 EVEKKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHM 300
           EVE KDFRKG+QWF++KRQHA+I+MADSLYYTKFK YC+P M+GRNCYADEHYLPTLF+M
Sbjct: 237 EVEVKDFRKGAQWFSMKRQHAIIVMADSLYYTKFKLYCRPGMDGRNCYADEHYLPTLFNM 296

Query: 301 IDPAGIANWSVTHADWSEGKWHPKAYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMP 360
           IDP GIANWSVTH DWSEGKWHPKAYR QD+S E L+++ AID ++H+TS+E+KK+ I P
Sbjct: 297 IDPTGIANWSVTHVDWSEGKWHPKAYRGQDVSYELLRNITAIDMSYHVTSNEKKKMMIQP 356

Query: 361 CMWNGMKRPCYLFARKFNPEALDKLVFLFVNYTTV 395
           C+WNG+KRPCYLFARKF PEA D L+ LF NYTTV
Sbjct: 357 CLWNGVKRPCYLFARKFYPEAQDNLLHLFSNYTTV 391




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574113|ref|XP_002527972.1| conserved hypothetical protein [Ricinus communis] gi|223532598|gb|EEF34384.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225446265|ref|XP_002267173.1| PREDICTED: uncharacterized protein LOC100262683 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296090292|emb|CBI40111.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224090529|ref|XP_002309015.1| predicted protein [Populus trichocarpa] gi|222854991|gb|EEE92538.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356550390|ref|XP_003543570.1| PREDICTED: uncharacterized protein LOC100817202 [Glycine max] Back     alignment and taxonomy information
>gi|356562117|ref|XP_003549320.1| PREDICTED: uncharacterized protein LOC100784132 [Glycine max] Back     alignment and taxonomy information
>gi|449457189|ref|XP_004146331.1| PREDICTED: uncharacterized protein LOC101222732 [Cucumis sativus] gi|449516335|ref|XP_004165202.1| PREDICTED: uncharacterized LOC101222732 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357479561|ref|XP_003610066.1| hypothetical protein MTR_4g127550 [Medicago truncatula] gi|355511121|gb|AES92263.1| hypothetical protein MTR_4g127550 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388520347|gb|AFK48235.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
TAIR|locus:2128181376 AT4G31350 [Arabidopsis thalian 0.939 0.986 0.654 3.2e-145
TAIR|locus:2059040394 AT2G19160 [Arabidopsis thalian 0.989 0.992 0.569 1.3e-132
TAIR|locus:2126525401 AT4G30060 [Arabidopsis thalian 0.987 0.972 0.581 5e-131
TAIR|locus:2117542389 AT4G25870 [Arabidopsis thalian 0.921 0.935 0.568 3.6e-121
TAIR|locus:2165605388 AT5G57270 [Arabidopsis thalian 0.939 0.956 0.564 3.2e-120
TAIR|locus:2012748412 AT1G10280 [Arabidopsis thalian 0.706 0.677 0.444 8.8e-61
TAIR|locus:2181442411 AT5G16170 [Arabidopsis thalian 0.665 0.639 0.457 1e-59
TAIR|locus:2180552387 AT5G25970 [Arabidopsis thalian 0.564 0.576 0.508 1.2e-58
TAIR|locus:2181945386 AT5G11730 [Arabidopsis thalian 0.739 0.756 0.431 2.5e-58
TAIR|locus:2094781383 AT3G21310 [Arabidopsis thalian 0.688 0.710 0.429 1.7e-57
TAIR|locus:2128181 AT4G31350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1419 (504.6 bits), Expect = 3.2e-145, P = 3.2e-145
 Identities = 244/373 (65%), Positives = 303/373 (81%)

Query:    23 QQRPHLKRPIWIIAFVTFFIIFLTGVYVYPSGSGSLASCYFFSGRGCTMLEQLPATPTRE 82
             +QRP  K P WII  V    + +   ++YP  + S+A CY FSG GC + +Q    PTRE
Sbjct:     5 RQRPPFKGPRWIITLVVLVTVVVITAFIYPPRN-SVA-CYMFSGPGCPLYQQFLFVPTRE 62

Query:    83 LTDAENIAQVVFKEILNKPPVHSKNPKVAFMFLTPGNLPFENLWEKFFHGHEDRFSVYVH 142
             LTD+E  AQVV  EI+N P   + NPK+AFMFLTPG LPFE LWE FF GHE++FSVYVH
Sbjct:    63 LTDSEAAAQVVMNEIMNLPQSKTANPKLAFMFLTPGTLPFEPLWEMFFRGHENKFSVYVH 122

Query:   143 ASSEKPMHVSRYFVGRDIRSEKVAWGRISMLDAEKRLLAHALLDPDNQQFVLLSDSCIPL 202
             AS + P+H S YFVGRDI S KVAWG+ISM+DAE+RLLAHAL+DPDNQ F+LLSDSC+PL
Sbjct:   123 ASKKSPVHTSSYFVGRDIHSHKVAWGQISMVDAERRLLAHALVDPDNQHFILLSDSCVPL 182

Query:   203 HNFDYVYNYLMYTNVSYVDCFEDPGPHGNGRYSEHMLPEVEKKDFRKGSQWFTLKRQHAM 262
              +F+Y+YN+L++ N+S++DCFEDPGPHG+GRYS+HMLPEVEKKDFRKGSQWF++KR+HA+
Sbjct:   183 FDFNYIYNHLIFANLSFIDCFEDPGPHGSGRYSQHMLPEVEKKDFRKGSQWFSMKRRHAI 242

Query:   263 IIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMIDPAGIANWSVTHADWSEGKWH 322
             ++MADSLYYTKFK YC+PNMEGRNCYADEHY PTLF+MIDP GIANWSVTH DWSEGKWH
Sbjct:   243 VVMADSLYYTKFKLYCRPNMEGRNCYADEHYFPTLFNMIDPDGIANWSVTHVDWSEGKWH 302

Query:   323 PKAYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMPCMWNGMKRPCYLFARKFNPEAL 382
             PK Y A+DI+   ++ + +I   +H+TSD +K  T+ PC+W G +RPCYLFARKFNPE L
Sbjct:   303 PKLYNARDITPYLIRKIKSIQLAYHVTSDLKKVTTVKPCLWKGEQRPCYLFARKFNPETL 362

Query:   383 DKLVFLFVNYTTV 395
             D+L++LF NYT++
Sbjct:   363 DRLMYLFPNYTSL 375




GO:0005739 "mitochondrion" evidence=ISM
GO:0016020 "membrane" evidence=IEA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM
TAIR|locus:2059040 AT2G19160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126525 AT4G30060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117542 AT4G25870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165605 AT5G57270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012748 AT1G10280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181442 AT5G16170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180552 AT5G25970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181945 AT5G11730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094781 AT3G21310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00032346001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (391 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
pfam02485242 pfam02485, Branch, Core-2/I-Branching enzyme 5e-91
>gnl|CDD|217062 pfam02485, Branch, Core-2/I-Branching enzyme Back     alignment and domain information
 Score =  273 bits (701), Expect = 5e-91
 Identities = 114/248 (45%), Positives = 145/248 (58%), Gaps = 23/248 (9%)

Query: 110 VAFMFLT-PGNLPFENLWEKFFHGHEDRFSVYVHASSEKPMH------VSRYFVGRDI-R 161
           +AFMFL   G+LPF  LW +FF+  ++ + +YV A S            S +F  R I +
Sbjct: 1   IAFMFLVYKGDLPFLPLWLRFFYHPQNLYCIYVDAKSPSEFKERLRALASCFFNVRVIPK 60

Query: 162 SEKVAWGRISMLDAEKRLLAHALL-DPDNQQFVLLSDSCIPLHNFDYVYNYLMYTN--VS 218
           SE V WG  SM+DAE+RLLA+ LL DP    FVLLS+S IPL  FD +Y YL   N   S
Sbjct: 61  SEPVTWGGHSMVDAERRLLANLLLLDPSWDYFVLLSESDIPLKTFDELYRYLSSLNGNNS 120

Query: 219 YVDCFEDPGPHGNGRYSEHMLPEVEKKD----FRKGSQWFTLKRQHAMIIMADSLYYTKF 274
           +V+ F+DPG  G GRY+  MLPE++  D    +RKGSQWF L R  A  +++D+LYY  F
Sbjct: 121 FVESFDDPGWKGRGRYNPRMLPEIKLSDLPLKWRKGSQWFVLSRAFAEYVVSDNLYYPLF 180

Query: 275 KHYCKPNMEGRNCYADEHYLPTLFHMI--DPAGIANWSVTHADWSEGKWHPKAYRAQDIS 332
           K+YC        CY DEHY PTL  M    P    N ++T+ DWS G  HPK YR  DI 
Sbjct: 181 KYYCN------TCYPDEHYFPTLLGMPGHFPNTCVNRTLTYVDWSRGGCHPKTYRPCDIG 234

Query: 333 SEFLKSLA 340
            E LK + 
Sbjct: 235 PEDLKRIR 242


This is a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme and core-2 branching enzyme . I-branching enzyme is responsible for the production of the blood group I-antigen during embryonic development. Core-2 branching enzyme forms crucial side-chain branches in O-glycans. Length = 242

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 395
PF02485244 Branch: Core-2/I-Branching enzyme; InterPro: IPR00 100.0
PLN03183421 acetylglucosaminyltransferase family protein; Prov 100.0
KOG0799439 consensus Branching enzyme [Carbohydrate transport 99.9
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
Probab=100.00  E-value=7.8e-46  Score=351.86  Aligned_cols=223  Identities=28%  Similarity=0.467  Sum_probs=146.0

Q ss_pred             EEEEEEcCC-CCChHHHHHHHhhccCCCceEEEEeCCCCCC------Cc--cceeeeeccC-CCccccCcchHHHHHHHH
Q 016083          110 VAFMFLTPG-NLPFENLWEKFFHGHEDRFSVYVHASSEKPM------HV--SRYFVGRDIR-SEKVAWGRISMLDAEKRL  179 (395)
Q Consensus       110 iAfLfLt~~-~l~l~~Lwe~ff~~~~~~~sIYVHvD~k~~~------~~--s~vF~~r~Ip-s~~V~WG~~SlV~AelrL  179 (395)
                      ||||||+|+ +.++..+|.+++  +++.+.+|||+|+|++.      ..  ......+.++ +++|.||++|||+||++|
T Consensus         1 iAylil~h~~~~~~~~~l~~~l--~~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~~v~WG~~S~v~A~l~l   78 (244)
T PF02485_consen    1 IAYLILAHKNDPEQLERLLRLL--YHPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRVDVRWGGFSLVEATLNL   78 (244)
T ss_dssp             EEEEEEESS--HHHHHHHHHHH----TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSHHHHHHHHHH
T ss_pred             CEEEEEecCCCHHHHHHHHHHh--cCCCCEEEEEEcCCCChHHHHHHHHhcccCCceeecccccccccCCccHHHHHHHH
Confidence            799999976 766544555554  35677888999999652      10  1111122344 689999999999999999


Q ss_pred             HHHHhc-CCCCCEEEEecCCCccCCChHHHHHHHhcC--CccceeeccCCCCCCCCCcccc----cCccccccccccccc
Q 016083          180 LAHALL-DPDNQQFVLLSDSCIPLHNFDYVYNYLMYT--NVSYVDCFEDPGPHGNGRYSEH----MLPEVEKKDFRKGSQ  252 (395)
Q Consensus       180 L~~AL~-d~~n~yfvLLSgsdiPL~s~~~I~~~L~~~--~~sFIe~~~~p~p~~~~Ry~~~----mlp~i~~~~~rkGSQ  252 (395)
                      |++|++ +++|+|||||||+|+||+++++|++||+..  +.+|+++...+++...+||...    +.+.++..++++|||
T Consensus        79 l~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~GSq  158 (244)
T PF02485_consen   79 LREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLYKGSQ  158 (244)
T ss_dssp             HHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--EEE-S
T ss_pred             HHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccccccccccccce
Confidence            999999 789999999999999999999999999885  5788999877654333566543    233444458999999


Q ss_pred             eeeecHHHHHHHHhChHHHHHHHhhccCCCCCCccccCccchhhhhccc--CCCCCCCCceEEEeCC-CCCCCCcccccC
Q 016083          253 WFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMI--DPAGIANWSVTHADWS-EGKWHPKAYRAQ  329 (395)
Q Consensus       253 WfsLtR~~a~~Iv~d~~~~~~F~~~c~~~~~~~tc~pDE~yf~TlL~~~--~~~~i~n~~lryIDWs-~g~~hP~~~~~~  329 (395)
                      ||+|||++|++|++|....+.|+.+|+     ++++|||+||||||.+.  ..+.+.|+++|||||+ +|++||++++..
T Consensus       159 W~~Ltr~~v~~il~~~~~~~~~~~~~~-----~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i~W~~~~~~~p~~~~~~  233 (244)
T PF02485_consen  159 WFSLTRDFVEYILDDPNYRPKLKKYFR-----FSLCPDESFFQTLLNNSGHFKDTIVNRNLRYIDWSRRGGCHPKTLTIC  233 (244)
T ss_dssp             --EEEHHHHHHHHH-HHHHHHHHHHT------TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE-BTGT-SS---SSEEE
T ss_pred             eeEeeHHHHHHhhhhHHHHHHHHHhhc-----CccCcchhhHHHhhcccchhcccccCCCEEEEECCCCCCCCCCeeeee
Confidence            999999999999999998889998885     47999999999999876  4578899999999999 788999999999


Q ss_pred             CCCHHHHHHH
Q 016083          330 DISSEFLKSL  339 (395)
Q Consensus       330 Di~~e~L~~i  339 (395)
                      |++.+.|..|
T Consensus       234 ~~~~~d~~~~  243 (244)
T PF02485_consen  234 DLGPEDLPWL  243 (244)
T ss_dssp             E--GGGHHHH
T ss_pred             eeCHHHHHhh
Confidence            9998877765



These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.

>PLN03183 acetylglucosaminyltransferase family protein; Provisional Back     alignment and domain information
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
2gak_A391 Beta-1,6-N-acetylglucosaminyltransferase; glycopro 1e-28
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Length = 391 Back     alignment and structure
 Score =  114 bits (287), Expect = 1e-28
 Identities = 36/342 (10%), Positives = 95/342 (27%), Gaps = 46/342 (13%)

Query: 74  QLPATPTRELTDAENIAQVVFKEILNKPPVHSKNPKVAFMFLTPGNLP-FENLWEKFFHG 132
           +        +T          K I+           +A+  +    +   + L    +  
Sbjct: 50  RWTPHDYINMTRDCASFIRTRKYIVEPLTKEEVGFPIAYSIVVHHKIEMLDRLLRAIYMP 109

Query: 133 HEDRFSVYVHASSEKPMHVSRYFVGRDI-------RSEKVAWGRISMLDAEKRLLAHAL- 184
             + + ++V   +E+    +   +           + E V +   + + A+   +     
Sbjct: 110 Q-NFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWTRVKADLNCMKDLYR 168

Query: 185 LDPDNQQFVLLSDSCIPLHNFDYVYNYL-MYTNVSYVDCFEDPGPHGNGRYSEH------ 237
           ++ + +  + L     P+     +   L   T  + ++  + P          +      
Sbjct: 169 MNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYAVVDGK 228

Query: 238 -------MLPEVEKKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYAD 290
                    P   K     GS +F + R++   ++ +     K   + +          D
Sbjct: 229 LTNTGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLEN-ENIQKLMEWAQ-----DTYSPD 282

Query: 291 EHYLPTLFHMIDPAG-IANWSVTHADWSEG-----KWHPKAYRAQDISSEFLKSLAAIDE 344
           E    T+  + +  G   + +              KW        + +     S   +  
Sbjct: 283 EFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRS 342

Query: 345 TFHITSDEQKKVTIMPCMWNGMKRPCYLFARKFNPEALDKLV 386
                + +           + M R  +LFA KF+ +     +
Sbjct: 343 VCVFGAGD----------LSWMLRQHHLFANKFDMDVDPFAI 374


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
2gak_A391 Beta-1,6-N-acetylglucosaminyltransferase; glycopro 100.0
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Back     alignment and structure
Probab=100.00  E-value=2.7e-51  Score=415.38  Aligned_cols=244  Identities=14%  Similarity=0.197  Sum_probs=196.3

Q ss_pred             CCCcEEEEEEcCCCCChHHHHHHHhhc-cCCCceEEEEeCCCCCCC-------ccceeeeeccC--CCccccCcchHHHH
Q 016083          106 KNPKVAFMFLTPGNLPFENLWEKFFHG-HEDRFSVYVHASSEKPMH-------VSRYFVGRDIR--SEKVAWGRISMLDA  175 (395)
Q Consensus       106 ~~~KiAfLfLt~~~l~l~~Lwe~ff~~-~~~~~sIYVHvD~k~~~~-------~s~vF~~r~Ip--s~~V~WG~~SlV~A  175 (395)
                      ..+|||||||+||+.   +.|++++++ .++.+.||||+|++++..       ..+.|.+..|.  +..|.||++|||+|
T Consensus        82 ~~~kiAflil~h~d~---~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~~~~~v~WGg~S~v~A  158 (391)
T 2gak_A           82 VGFPIAYSIVVHHKI---EMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWTRVKA  158 (391)
T ss_dssp             HTSCEEEEEEECSCH---HHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECSSCCCCCTTSHHHHHH
T ss_pred             cCCCEEEEEEecCCH---HHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEeccCcccccCCchHHHH
Confidence            358999999999976   577888875 467788999999998631       23345566653  68999999999999


Q ss_pred             HHHHHHHHhcC-CCCCEEEEecCCCccCCChHHHHHHHhc-CCccceeeccCCCCCCCCCccc----------------c
Q 016083          176 EKRLLAHALLD-PDNQQFVLLSDSCIPLHNFDYVYNYLMY-TNVSYVDCFEDPGPHGNGRYSE----------------H  237 (395)
Q Consensus       176 elrLL~~AL~d-~~n~yfvLLSgsdiPL~s~~~I~~~L~~-~~~sFIe~~~~p~p~~~~Ry~~----------------~  237 (395)
                      |++||++||++ .+|+|||||||+|+||+++++|++||+. .++|||++..+++.. .+|+..                +
T Consensus       159 ~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFIe~~~~~~~~-~~R~~~~~~~~~~~l~~~~~~k~  237 (391)
T 2gak_A          159 DLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK-EERWKKRYAVVDGKLTNTGIVKA  237 (391)
T ss_dssp             HHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBCCBEECCGGG-SHHHHEEEEEETTEEEEEEEECC
T ss_pred             HHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCceeeccCCCccc-ccceEeeeeccccceeeeccccc
Confidence            99999999985 5999999999999999999999999997 899999999865432 223221                1


Q ss_pred             cCccccccccccccceeeecHHHHHHHHhChHHHHHHHhhccCCCCCCccccCccchhhhhcccC-CCC----------C
Q 016083          238 MLPEVEKKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMID-PAG----------I  306 (395)
Q Consensus       238 mlp~i~~~~~rkGSQWfsLtR~~a~~Iv~d~~~~~~F~~~c~~~~~~~tc~pDE~yf~TlL~~~~-~~~----------i  306 (395)
                      ++|.  ..+|++|||||+|||++|++|++|.. .++|.++|+     ++|+|||||||||+.+.+ ++.          .
T Consensus       238 ~~P~--~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k-----~t~~pDE~ffqTll~~~~~pg~~~~~~~~~~~~  309 (391)
T 2gak_A          238 PPPL--KTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQ-----DTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSD  309 (391)
T ss_dssp             CCSC--SSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHT-----TSSSGGGTHHHHHTTSTTSTTCCCSSGGGCBCT
T ss_pred             CCcc--ccceecccceeEecHHHHHHHHhCCc-HHHHHHHHc-----CCcCCchhHHHHHhhccCCCCcccccccccccc
Confidence            2232  46899999999999999999999965 578888887     579999999999997753 322          2


Q ss_pred             CCCceEEEeCC-------CCCCCCc----------ccccCCCCHHHHHHHhhccccccccccccccccccccccCCCCCC
Q 016083          307 ANWSVTHADWS-------EGKWHPK----------AYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMPCMWNGMKRP  369 (395)
Q Consensus       307 ~n~~lryIDWs-------~g~~hP~----------~~~~~Di~~e~L~~ir~~~~~~~~~~~~~~~~~~~~c~yng~~~~  369 (395)
                      .|+++|||||+       +|++||.          +|+.+|+     +.|++                           +
T Consensus       310 ~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl-----~~l~~---------------------------s  357 (391)
T 2gak_A          310 MNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDL-----SWMLR---------------------------Q  357 (391)
T ss_dssp             TTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGH-----HHHTT---------------------------S
T ss_pred             ccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHH-----HHHHh---------------------------C
Confidence            47899999997       3556887          7888885     45654                           2


Q ss_pred             cceEEecCCcchHHHHHHhhhhcc
Q 016083          370 CYLFARKFNPEALDKLVFLFVNYT  393 (395)
Q Consensus       370 c~LFARKF~~~~~~~Ll~l~~~~~  393 (395)
                      ++||||||++++++.+++.++++.
T Consensus       358 ~~lFARKF~~~~d~~~l~~l~~~l  381 (391)
T 2gak_A          358 HHLFANKFDMDVDPFAIQCLDEHL  381 (391)
T ss_dssp             CCSEEECCCTTTCHHHHHHHHHHH
T ss_pred             CCceEEccCCccCHHHHHHHHHHH
Confidence            699999999999999999888653




Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00