Citrus Sinensis ID: 016114

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
Protein Sequence
MMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY
Secondary Structure (PSIPRED)
cHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mmsgivdslkddePLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILElnrgtesadlvlplfslgslfikegkavdaESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIkdsnymsldDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITekykgkehpsFVTHLLNLAASYSRSKNFVEAERLLRICLDImtktvgpddqsisfpmlhLGITLYHLNRDKEAEKLVLEALYIREIafgkdslpvgeALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLgrkeekfplKKRLSNLRMKYKQKVQY
Flexible Loop (DISEMBL)
mmsgivdslkdDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILelnrgtesADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEkykgkehpSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAfgkdslpvgEALDCLVSIQtrlgeddtklLELLKRVLRIqerefgseseevmLTLKKVVSyldklgrkeekfplkkrlsnlrmkykqkvqy
Low Complexity Region (SEG)
MMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVgrgqegrelleecllITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY
Disordered region (IsUnstruct)
*************PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL**************************
Disordered Region (DISOPRED)
MMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN****Y******
Disordered Region (DISEMBL)
MMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY
Disordered Region (DISPRO)
MMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMSGIVDSLKDDEPLLDAILLHMGSMYSTxxxxxxxxxxxxxxxxxxxxxYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	395	2.2.26 [Sep-21-2011]
Q6AZT7	1300	Nephrocystin-3 OS=Xenopus	N/A	no	0.815	0.247	0.246	7e-15
A0JM23	1311	Nephrocystin-3 OS=Xenopus	yes	no	0.769	0.231	0.238	6e-14
Q7TNH6	1325	Nephrocystin-3 OS=Mus mus	yes	no	0.802	0.239	0.239	2e-13
Q7Z494	1330	Nephrocystin-3 OS=Homo sa	yes	no	0.810	0.240	0.237	3e-13
P0CI65	1303	Nephrocystin-3 OS=Danio r	yes	no	0.870	0.264	0.242	6e-13
P46822	540	Kinesin light chain OS=Ca	yes	no	0.498	0.364	0.320	3e-10
P46825	571	Kinesin light chain OS=Do	N/A	no	0.430	0.297	0.304	7e-10
Q05090	686	Kinesin light chain OS=St	no	no	0.410	0.236	0.306	2e-09
Q5R581	560	Kinesin light chain 1 OS=	yes	no	0.564	0.398	0.252	1e-08
Q07866	573	Kinesin light chain 1 OS=	no	no	0.564	0.389	0.252	2e-08

>sp|Q6AZT7|NPHP3_XENLA Nephrocystin-3 OS=Xenopus laevis GN=nphp3 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 148/349 (42%), Gaps = 27/349 (7%)

Query: 59   VTSLLGMAKVLG----SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 114
            +TSL  + + LG     +G   +AV    R + I E     +   +   L  L  ++++ 
Sbjct: 912  MTSLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYMQS 971

Query: 115  GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174
             K  +AE ++ + L+I    YG    RV   + +LA         E+A +L KK+L++ +
Sbjct: 972  KKFGNAEQLYKQALEISENAYGSEHLRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQ 1031

Query: 175  DS--------------------NYMSLDDSIMENMRI--DLAELLHIVGRGQEGRELLEE 212
             S                      ++L     +N R   +L  L ++    +     L+ 
Sbjct: 1032 KSARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKR 1091

Query: 213  CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 272
             L + E+  G +HP     + NLAA Y+  K + +AE L    LDI  + + PD  S+++
Sbjct: 1092 SLEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAY 1151

Query: 273  PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 332
             + HL +      +  +A  L   A+ IR+ +FG     V  AL  L  +  ++ + D  
Sbjct: 1152 TVKHLAVLYKRKGKLDKAVPLYELAVDIRQKSFGPKHPSVATALVNLAVLYCQMKKQDDA 1211

Query: 333  LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 381
             L L +R ++I E   G     V  TLK +     + G  E+   L KR
Sbjct: 1212 -LPLYERAMKIYEDSLGRMHPRVGETLKNLAVLRYEEGDYEKAAELYKR 1259

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.
Xenopus laevis (taxid: 8355)

>sp|A0JM23|NPHP3_XENTR Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 140/331 (42%), Gaps = 27/331 (8%)

Query: 59   VTSLLGMAKVLG----SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 114
            +TSL  + + LG     +G   +AV    R + I E     +   +   L  L  ++++ 
Sbjct: 923  MTSLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYVQS 982

Query: 115  GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174
             K  +AE ++ + L+I    YG    RV   + +LA         E+A +L KK+L++ +
Sbjct: 983  KKFGNAEQLYKQALEISENAYGSEHMRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQ 1042

Query: 175  DS--------------------NYMSLDDSIMENMRI--DLAELLHIVGRGQEGRELLEE 212
             S                      ++L     +N R   +L  L ++    +     L+ 
Sbjct: 1043 KSARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKR 1102

Query: 213  CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 272
             L + E+  G +HP     + NLAA Y+  K + +AE L    LDI  + + PD  S+++
Sbjct: 1103 SLEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAY 1162

Query: 273  PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 332
             + HL +      +  +A  L   A+ IR+ +FG     V  AL  L  +  ++ +   +
Sbjct: 1163 TVKHLAVLYKRKGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYCQM-KKQAE 1221

Query: 333  LLELLKRVLRIQEREFGSESEEVMLTLKKVV 363
               L +R ++I E   G     V  TLK + 
Sbjct: 1222 ASPLYERAMKIYEDSLGRMHPRVGETLKNLA 1252

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Xenopus tropicalis (taxid: 8364)

>sp|Q7TNH6|NPHP3_MOUSE Nephrocystin-3 OS=Mus musculus GN=Nphp3 PE=1 SV=2

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 145/343 (42%), Gaps = 26/343 (7%)

Query: 48   ESRYGKTSILLVTSLL-GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 106
            E+  G+ ++L +  L   + + L  +G   +AV    R + I E     +   +   L  
Sbjct: 926  ENSEGEENMLCLADLYETLGRFLKDLGLLSQAVVPLQRSLEIRETALDPDHPRVAQSLHQ 985

Query: 107  LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 166
            L  ++++  K  DAE ++ + L+I    YG +       + +LA         E+A    
Sbjct: 986  LAGVYVQWKKFGDAEQLYKQALEISENAYGADHPHAARELEALATLYHKQNKYEQAEHFR 1045

Query: 167  KKALRVIKDSNY--------------------MSLDDSIMENMRI--DLAELLHIVGRGQ 204
            KK++ + + +                      ++L     EN R   +L  L  +    +
Sbjct: 1046 KKSVIIRQQATRRKGSLYGFALLRRRALQLEELTLGKDKPENARTLNELGVLYFLQNNLE 1105

Query: 205  EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 264
               + L+  L + E+  G +HP     L NLAA  +  K + +AE L    LDI  + + 
Sbjct: 1106 TAEQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNEKKQYEKAEELYERALDIRRRALA 1165

Query: 265  PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQT 324
            PD  S+++ + HL I      +  +A  L   A+ IR+ +FG     V  AL  L  + +
Sbjct: 1166 PDHPSLAYTVKHLAILYKKTGKVDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLHS 1225

Query: 325  RLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKK--VVSY 365
            ++ +  ++ L L +R L+I E   G     V  TLK   V+SY
Sbjct: 1226 QM-KKHSEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSY 1267

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Mus musculus (taxid: 10090)

>sp|Q7Z494|NPHP3_HUMAN Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 151/354 (42%), Gaps = 34/354 (9%)

Query: 23   MGSMYSTLENY-------EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA 75
            +  +Y TL  +        ++++  QR + + E+        +  SL  +A V     + 
Sbjct: 942  LADLYETLGRFLKDLGLLSQAIVPLQRSLEIRETALDPDHPRVAQSLHQLASVYVQWKKF 1001

Query: 76   KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 135
              A ++Y + + I E   G +       L +L +L+ K+ K   AE    +  KI+ K  
Sbjct: 1002 GNAEQLYKQALEISENAYGADHPYTARELEALATLYQKQNKYEQAEHFRKKSFKIHQKAI 1061

Query: 136  GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI--DL 193
             +     G A+                  L ++AL++ +    ++L     +N R   +L
Sbjct: 1062 KKKGNLYGFAL------------------LRRRALQLEE----LTLGKDTPDNARTLNEL 1099

Query: 194  AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 253
              L ++    +   + L+  L + E+  G +HP     L NLAA  +  K + +AE L  
Sbjct: 1100 GVLYYLQNNLETADQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNEKKQYDKAEELYE 1159

Query: 254  ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG 313
              LDI  + + PD  S+++ + HL I    + +  +A  L   A+ IR+ +FG     V 
Sbjct: 1160 RALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSVA 1219

Query: 314  EALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKK--VVSY 365
             AL  L  + +++ +   + L L +R L+I E   G     V  TLK   V+SY
Sbjct: 1220 TALVNLAVLYSQM-KKHVEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSY 1272

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling which regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Homo sapiens (taxid: 9606)

>sp|P0CI65|NPHP3_DANRE Nephrocystin-3 OS=Danio rerio GN=nphp3 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 158/376 (42%), Gaps = 32/376 (8%)

Query: 1    MMSGIVDSLKDDEPLLDA--ILLHMGSMYSTLENY-------EKSMLVYQRVINVLESRY 51
            M +   D+LK+ E   ++   +  + ++Y TL  +        +++   QR + + E+  
Sbjct: 896  MATEYFDALKEFEKTCESEQSMSRLANLYETLGRFLKDLGLLSQAVAPLQRSLEIRETAL 955

Query: 52   GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 111
                  +  SL  +A V     +   A ++Y + + I E   G E + +   L SL  L+
Sbjct: 956  DPDHPSVAQSLHQLAGVYVHWRKFGNAEQLYKQAMEICENAYGPEHSTVARELDSLSLLY 1015

Query: 112  IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171
             K+ K   AE +  R +KI  K   +     G A+                  L ++AL+
Sbjct: 1016 QKQNKYEQAEKLRKRSVKIRQKTARQKGHMYGFAL------------------LKRRALQ 1057

Query: 172  VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 231
            +  +   +  D +       +L  L ++       +  L   L + ++  G +HP     
Sbjct: 1058 L--EELTLGKDSTDCAKTLNELGVLYYLQNNLDAAKLFLTRSLEMRQRVLGPDHPDCAQS 1115

Query: 232  LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 291
            L NLAA +S  K +  AE L    LDI  + + PD  S+++ + HL +      + ++A 
Sbjct: 1116 LNNLAALHSERKEYESAEELYERALDIRKRALAPDHPSLAYTLKHLAMLYKRRGKLEKAV 1175

Query: 292  KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE 351
             L   AL IRE +FG     V  AL  L  +  +L +  +  L L +R L++ E   G  
Sbjct: 1176 PLYELALEIREKSFGPKHPSVATALVNLAVLYCQLKQ-HSDALPLYERALKVYEDSLGRL 1234

Query: 352  SEEVMLTLKK--VVSY 365
               V  TLK   V+SY
Sbjct: 1235 HPRVGETLKNLAVLSY 1250

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Danio rerio (taxid: 7955)

>sp|P46822|KLC_CAEEL Kinesin light chain OS=Caenorhabditis elegans GN=klc-2 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 6/203 (2%)

Query: 154 CANGNAEEAVELYKKALRVI-KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 212
            + G  E AV L K+AL  + K S +   D + M N+   LA +     + +E   LL E
Sbjct: 217 ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNI---LALVYRDQNKYKEAANLLNE 273

Query: 213 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 272
            L I EK  G+ HP+    L NLA  + +   F +AE L +  L+I  K +G D   ++ 
Sbjct: 274 ALSIREKCLGESHPAVAATLNNLAVLFGKRGKFKDAEPLCKRALEIREKVLGDDHPDVAK 333

Query: 273 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 332
            + +L +   +  + +E EK    AL I E   G D   V +  + L S   + G+   +
Sbjct: 334 QLNNLALLCQNQGKYEEVEKYYKRALEIYESKLGPDDPNVAKTKNNLSSAYLKQGK-YKE 392

Query: 333 LLELLKRVL-RIQEREFGSESEE 354
             EL K++L R  EREFG  S E
Sbjct: 393 AEELYKQILTRAHEREFGQISGE 415

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|P46825|KLC_DORPE Kinesin light chain OS=Doryteuthis pealeii PE=2 SV=1

 Score = 65.5 bits (158), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 1/171 (0%)

Query: 201 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 260
           GR +    L ++ L   EK  G +HP   T L  LA  Y     + EA  LL   L I  
Sbjct: 234 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQGKYKEAANLLNDALGIRE 293

Query: 261 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 320
           KT+GPD  +++  + +L +      + K+AE L   AL IRE   GKD   V + L+ L 
Sbjct: 294 KTLGPDHPAVAATLNNLAVLYGKRGKYKDAEPLCKRALVIREKVLGKDHPDVAKQLNNLA 353

Query: 321 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 371
            +    G+ + ++    +R L I ++E G +   V  T   + S   K G+
Sbjct: 354 LLCQNQGKYE-EVERYYQRALEIYQKELGPDDPNVAKTKNNLASAYLKQGK 403

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Loligo pealeii (taxid: 1051067)

>sp|Q05090|KLC_STRPU Kinesin light chain OS=Strongylocentrotus purpuratus PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 1/163 (0%)

Query: 209 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 268
           L ++ L   EK  G +HP   T L  LA  Y     + EA  LL   L I  KT+GPD  
Sbjct: 237 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAGNLLHDALAIREKTLGPDHP 296

Query: 269 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE 328
           +++  + +L +      + KEAE L   AL IRE   GKD   V + L+ L  +    G+
Sbjct: 297 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 356

Query: 329 DDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 371
            + ++    +R L I E++ G +   V  T   + +   K G+
Sbjct: 357 YE-EVEWYYQRALEIYEKKLGPDDPNVAKTKNNLAAAYLKQGK 398

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Strongylocentrotus purpuratus (taxid: 7668)

>sp|Q5R581|KLC1_PONAB Kinesin light chain 1 OS=Pongo abelii GN=KLC1 PE=2 SV=3

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 19/242 (7%)

Query: 12  DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 71
           D P +  +L  +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G 
Sbjct: 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 309

Query: 72  IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 131
            G+ K+A  +  R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY
Sbjct: 310 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 369

Query: 132 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 191
               G +D  V     +LA      G  ++A  LYK+ L    +  + S+DD   EN  I
Sbjct: 370 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD---ENKPI 426

Query: 192 DL--AELLHIVGRGQEGRELLEECLLITEKYKGK------EHPSFVTHLLNLAASYSRSK 243
            +   E     G+ ++G    E        Y G       + P+  T L NL A Y R  
Sbjct: 427 WMHAEEREECKGKQKDGTSFGE--------YGGWYKACKVDSPTVTTTLKNLGALYRRQG 478

Query: 244 NF 245
            F
Sbjct: 479 KF 480

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Pongo abelii (taxid: 9601)

>sp|Q07866|KLC1_HUMAN Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 19/242 (7%)

Query: 12  DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 71
           D P +  +L  +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G 
Sbjct: 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 309

Query: 72  IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 131
            G+ K+A  +  R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY
Sbjct: 310 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 369

Query: 132 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 191
               G +D  V     +LA      G  ++A  LYK+ L    +  + S+DD   EN  I
Sbjct: 370 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD---ENKPI 426

Query: 192 DL--AELLHIVGRGQEGRELLEECLLITEKYKGK------EHPSFVTHLLNLAASYSRSK 243
            +   E     G+ ++G    E        Y G       + P+  T L NL A Y R  
Sbjct: 427 WMHAEEREECKGKQKDGTSFGE--------YGGWYKACKVDSPTVTTTLKNLGALYRRQG 478

Query: 244 NF 245
            F
Sbjct: 479 KF 480

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	395
225455344	573	PREDICTED: nephrocystin-3-like [Vitis vi	1.0	0.689	0.731	1e-168
302143919	559	unnamed protein product [Vitis vinifera]	1.0	0.706	0.731	1e-168
224135115	579	predicted protein [Populus trichocarpa]	0.989	0.675	0.721	1e-165
255561868	505	kinesin light chain, putative [Ricinus c	1.0	0.782	0.708	1e-163
297792665	562	hypothetical protein ARALYDRAFT_495375 [	0.994	0.699	0.643	1e-150
356509235	577	PREDICTED: nephrocystin-3-like [Glycine	1.0	0.684	0.683	1e-150
449497357	561	PREDICTED: nephrocystin-3-like [Cucumis	1.0	0.704	0.658	1e-150
18423468	564	kinesin light chain-related protein [Ara	1.0	0.700	0.645	1e-148
449456393	564	PREDICTED: nephrocystin-3-like [Cucumis	1.0	0.700	0.645	1e-145
357463995	580	Kinesin light chain [Medicago truncatula	0.987	0.672	0.687	1e-144

>gi|225455344|ref|XP_002272297.1| PREDICTED: nephrocystin-3-like [Vitis vinifera]

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 289/395 (73%), Positives = 341/395 (86%)

Query: 1   MMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 60
           MM  IVD LKDDE LLD++LLHMGS+YSTL  +EKSML+Y+R + +LE  YGK S  L+T
Sbjct: 179 MMDKIVDGLKDDEALLDSVLLHMGSVYSTLGKFEKSMLMYRRALEILEMTYGKDSAFLIT 238

Query: 61  SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 120
            LLGMAK LGSIGR  KAVEIYH+ I ILEL+RG ES DLV+PL  LG+L IKE KA DA
Sbjct: 239 PLLGMAKALGSIGRVTKAVEIYHQAIAILELSRGAESEDLVVPLLGLGNLLIKERKATDA 298

Query: 121 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 180
           E  F+RIL IY + YGENDGRVG+AMCSLAH KCA G+A+EA++LY+ AL+++K S YM+
Sbjct: 299 EIPFTRILNIYKRSYGENDGRVGIAMCSLAHVKCAKGDADEAIQLYRNALQIVKVSKYMA 358

Query: 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 240
           LDD+IME MRIDLAELLH+VGRG+EGRELLEECLLITEKYKG++HPS VTHL+NLA SYS
Sbjct: 359 LDDNIMEKMRIDLAELLHVVGRGKEGRELLEECLLITEKYKGEDHPSSVTHLINLATSYS 418

Query: 241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300
           RSKNFVEAERLLR  L IM KT+GPDDQSI+FPMLHL +TLYHL RD+EAE+L L+AL I
Sbjct: 419 RSKNFVEAERLLRTSLRIMMKTMGPDDQSITFPMLHLAVTLYHLKRDEEAEQLTLKALQI 478

Query: 301 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK 360
           RE AFGK+SLPVGEALDCLVSIQTR+G+DD++LL+LLKRVL IQE+EFG ESEEVM+TLK
Sbjct: 479 REAAFGKESLPVGEALDCLVSIQTRVGKDDSELLDLLKRVLIIQEKEFGYESEEVMITLK 538

Query: 361 KVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 395
           K+V YLDK+GRK+EKFPL+KRLS LR K+K+ +QY
Sbjct: 539 KIVFYLDKMGRKDEKFPLQKRLSLLRNKHKESIQY 573

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143919|emb|CBI23024.3| unnamed protein product [Vitis vinifera]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 289/395 (73%), Positives = 341/395 (86%)

Query: 1   MMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 60
           MM  IVD LKDDE LLD++LLHMGS+YSTL  +EKSML+Y+R + +LE  YGK S  L+T
Sbjct: 165 MMDKIVDGLKDDEALLDSVLLHMGSVYSTLGKFEKSMLMYRRALEILEMTYGKDSAFLIT 224

Query: 61  SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 120
            LLGMAK LGSIGR  KAVEIYH+ I ILEL+RG ES DLV+PL  LG+L IKE KA DA
Sbjct: 225 PLLGMAKALGSIGRVTKAVEIYHQAIAILELSRGAESEDLVVPLLGLGNLLIKERKATDA 284

Query: 121 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 180
           E  F+RIL IY + YGENDGRVG+AMCSLAH KCA G+A+EA++LY+ AL+++K S YM+
Sbjct: 285 EIPFTRILNIYKRSYGENDGRVGIAMCSLAHVKCAKGDADEAIQLYRNALQIVKVSKYMA 344

Query: 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 240
           LDD+IME MRIDLAELLH+VGRG+EGRELLEECLLITEKYKG++HPS VTHL+NLA SYS
Sbjct: 345 LDDNIMEKMRIDLAELLHVVGRGKEGRELLEECLLITEKYKGEDHPSSVTHLINLATSYS 404

Query: 241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300
           RSKNFVEAERLLR  L IM KT+GPDDQSI+FPMLHL +TLYHL RD+EAE+L L+AL I
Sbjct: 405 RSKNFVEAERLLRTSLRIMMKTMGPDDQSITFPMLHLAVTLYHLKRDEEAEQLTLKALQI 464

Query: 301 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK 360
           RE AFGK+SLPVGEALDCLVSIQTR+G+DD++LL+LLKRVL IQE+EFG ESEEVM+TLK
Sbjct: 465 REAAFGKESLPVGEALDCLVSIQTRVGKDDSELLDLLKRVLIIQEKEFGYESEEVMITLK 524

Query: 361 KVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 395
           K+V YLDK+GRK+EKFPL+KRLS LR K+K+ +QY
Sbjct: 525 KIVFYLDKMGRKDEKFPLQKRLSLLRNKHKESIQY 559

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135115|ref|XP_002321987.1| predicted protein [Populus trichocarpa] gi|222868983|gb|EEF06114.1| predicted protein [Populus trichocarpa]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 282/391 (72%), Positives = 338/391 (86%)

Query: 5   IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 64
           +V+ L DDEPLLD++L+HMGSMYS L  +EKSMLVYQRVI +LE  +GK S  LV+ LLG
Sbjct: 189 VVERLTDDEPLLDSVLIHMGSMYSALGKFEKSMLVYQRVIAILERIHGKGSAFLVSPLLG 248

Query: 65  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 124
           MAK+LGSIG+A KA+E+Y RVI+ILE +RG ES DLV+PL  LG+L IKEG+A DAES+F
Sbjct: 249 MAKILGSIGKATKAIEVYQRVISILESSRGAESKDLVVPLSGLGNLLIKEGRATDAESLF 308

Query: 125 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 184
           +RIL IY + YGE DGR GMA+CS+AH KCA GNAEEA+ LY+KAL+VIKD++YM++DDS
Sbjct: 309 NRILSIYKESYGEYDGRFGMALCSVAHVKCATGNAEEAINLYRKALQVIKDADYMAVDDS 368

Query: 185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 244
           IME MRIDLAELLH+VGRG EGRELLEECLLITEKYKGK+HPS VTHL+NLA SYS+SKN
Sbjct: 369 IMERMRIDLAELLHVVGRGNEGRELLEECLLITEKYKGKDHPSSVTHLINLATSYSQSKN 428

Query: 245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 304
           +V+AERLLR  L+IM K+V PDD SI+FPMLHL +TLY LN+D+EAE+L LE L+IRE A
Sbjct: 429 YVQAERLLRTSLEIMMKSVRPDDSSITFPMLHLAVTLYRLNQDEEAEQLTLEVLHIREKA 488

Query: 305 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS 364
           FGKDSLPVGEALDCLVSIQTRLG+ + +LL+LLK+VL+IQE+EFG ESEEVM TLKK+V 
Sbjct: 489 FGKDSLPVGEALDCLVSIQTRLGKPEAELLDLLKQVLKIQEKEFGYESEEVMRTLKKIVF 548

Query: 365 YLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 395
           YLDK GRK+EKF ++KRLS LRMKY Q +QY
Sbjct: 549 YLDKTGRKDEKFSMQKRLSVLRMKYNQMMQY 579

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561868|ref|XP_002521943.1| kinesin light chain, putative [Ricinus communis] gi|223538868|gb|EEF40467.1| kinesin light chain, putative [Ricinus communis]

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 280/395 (70%), Positives = 336/395 (85%)

Query: 1   MMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 60
           +++ ++ +LKDD PLLD++L+HMGSMYS L  +EKSM+ YQRVI+VLES+YG++SI +V 
Sbjct: 111 LLNMVIKNLKDDGPLLDSVLMHMGSMYSALGKFEKSMIAYQRVISVLESKYGESSIFIVP 170

Query: 61  SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 120
            LLGM KVLGSIGR  KA E+Y RVI ILE  RG ES +LV+PLF LG+L +KEG+  DA
Sbjct: 171 PLLGMGKVLGSIGRVNKATEVYQRVIIILESGRGAESKELVVPLFGLGNLLMKEGRTTDA 230

Query: 121 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 180
           E  F RIL IY K+YGENDGR GMA+CS+A+ KC+ GN EEA++LY+KAL VIKDSNYM+
Sbjct: 231 EIHFIRILNIYRKLYGENDGRYGMALCSVANLKCSTGNVEEAIDLYRKALEVIKDSNYMA 290

Query: 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 240
            DD++ME MRIDLAELLH+VGRG+EGRELLEECLLITE+YKGKEHPS V HLLNLA SYS
Sbjct: 291 KDDTVMEKMRIDLAELLHVVGRGKEGRELLEECLLITEEYKGKEHPSSVAHLLNLATSYS 350

Query: 241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300
           +SKNFVEAERLLRI L+IM KTV P+DQS++FPML L +TLY+LNRD+EAE+L +E L I
Sbjct: 351 QSKNFVEAERLLRISLEIMMKTVSPEDQSVTFPMLQLAMTLYNLNRDEEAEQLAVEVLRI 410

Query: 301 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK 360
           RE AFGKDSLPVGEALDCLVSIQTRL   DT+LLELLKRVL+IQE+EFG ESEEV+ TLK
Sbjct: 411 REKAFGKDSLPVGEALDCLVSIQTRLERADTELLELLKRVLKIQEKEFGYESEEVLQTLK 470

Query: 361 KVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 395
           K+V YL K+GRK+EKF ++KRLS LR KYKQ V+Y
Sbjct: 471 KIVFYLAKVGRKDEKFSMQKRLSVLRTKYKQMVRY 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792665|ref|XP_002864217.1| hypothetical protein ARALYDRAFT_495375 [Arabidopsis lyrata subsp. lyrata] gi|297310052|gb|EFH40476.1| hypothetical protein ARALYDRAFT_495375 [Arabidopsis lyrata subsp. lyrata]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 254/395 (64%), Positives = 327/395 (82%), Gaps = 2/395 (0%)

Query: 1   MMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 60
           M++ IVD+LKD EPLLD++L+H+GSMYS +  +E S+L +QR + +LE+RYGK + LLVT
Sbjct: 170 MINKIVDNLKDSEPLLDSVLMHVGSMYSAIGKFENSILTHQRAVRILENRYGKGNTLLVT 229

Query: 61  SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 120
            LLG+AK+  S G+A KA+ +Y R +TILE NRG++S DLV+PLFSLG L +KEGKA +A
Sbjct: 230 PLLGLAKIFASDGKATKAIGVYERTVTILERNRGSQSEDLVMPLFSLGKLLLKEGKAAEA 289

Query: 121 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 180
           E  F+RI+ IY K+YGE DGRVGMAMCSLA+AKC+ G+A EAV++YK ALR+IKDS  M+
Sbjct: 290 EIHFTRIVNIYKKIYGEKDGRVGMAMCSLANAKCSKGDANEAVDIYKNALRIIKDS--MA 347

Query: 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 240
           +D+SI+ENMR DLAELLH VGRG EGRELLEECLLI E++KGK HPS  THL+NLAASYS
Sbjct: 348 IDNSILENMRTDLAELLHFVGRGDEGRELLEECLLINERFKGKNHPSMATHLINLAASYS 407

Query: 241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300
           RSKN+VEAERLLR CL+IM ++VG +DQSI+FPML+L +TL  LNRD+EAE++ L+ L I
Sbjct: 408 RSKNYVEAERLLRTCLNIMEESVGSEDQSITFPMLNLAVTLSQLNRDEEAEQVALKVLRI 467

Query: 301 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK 360
           RE AF KDSLPVGEALDCLVSIQ RLG DD ++L LLKRV+ IQE EFGS +EE+++TL+
Sbjct: 468 REKAFAKDSLPVGEALDCLVSIQARLGRDDGEILGLLKRVMMIQEEEFGSSAEELIVTLQ 527

Query: 361 KVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 395
           K++ +L+KL  K+EKF  ++RL+ LR K+KQ + +
Sbjct: 528 KIIHFLEKLEMKDEKFKFRRRLALLREKHKQSLSF 562

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509235|ref|XP_003523356.1| PREDICTED: nephrocystin-3-like [Glycine max]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 270/395 (68%), Positives = 330/395 (83%)

Query: 1   MMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 60
           MM  +VD+LKDD P LD+IL+HMGSMY+TL  +EKS+ VYQR + ++E  YG  S  LVT
Sbjct: 183 MMKEVVDNLKDDAPRLDSILMHMGSMYATLSKFEKSLDVYQRAVYIMERTYGMDSTFLVT 242

Query: 61  SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 120
             LGMAKVLGSIG+A KA+E Y RVIT+LE +RGT+S DLV+PL SL +L +KEG+A DA
Sbjct: 243 PCLGMAKVLGSIGKATKAIETYQRVITLLESSRGTKSKDLVVPLLSLANLLLKEGRANDA 302

Query: 121 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 180
           E+ F+R+L IYT++YG+NDG++GMAM SLA  KCA G ++EA++L+K+A++V+KDSNY+S
Sbjct: 303 ETHFTRVLNIYTELYGQNDGKIGMAMSSLARVKCAQGKSDEAIQLFKRAIQVMKDSNYLS 362

Query: 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 240
            DD+IME MR+DLAELLH VGRGQEGRELLEECL ITE+YKGKEHPS VTH++NLA SYS
Sbjct: 363 PDDNIMEKMRVDLAELLHTVGRGQEGRELLEECLWITERYKGKEHPSLVTHMINLATSYS 422

Query: 241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300
           RSKN+ +AE LLR  L IM K  G DDQSISFPMLHL +TLYHL +D+EAEKL LE L I
Sbjct: 423 RSKNYADAEHLLRRSLQIMIKQKGTDDQSISFPMLHLAVTLYHLKKDEEAEKLALEVLRI 482

Query: 301 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK 360
           RE AFGK+SLPVGEALDCLVSIQTRLG D+++LLELL+R+L IQEREFG ESEEV++TLK
Sbjct: 483 REKAFGKNSLPVGEALDCLVSIQTRLGRDESELLELLRRILNIQEREFGRESEEVLVTLK 542

Query: 361 KVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 395
           K+V YLDKLG+K+EK  L++RLS L  KYKQ V Y
Sbjct: 543 KIVYYLDKLGKKDEKLTLQRRLSVLSKKYKQMVNY 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497357|ref|XP_004160380.1| PREDICTED: nephrocystin-3-like [Cucumis sativus]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/395 (65%), Positives = 332/395 (84%)

Query: 1   MMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 60
           +++ +VDSL D EP LD++LLHMGSMYSTL+ +EKS+ VY+R I+++E ++G+ S  L+T
Sbjct: 167 ILNKVVDSLTDGEPFLDSVLLHMGSMYSTLKKFEKSISVYKRAIDIMEKKFGEDSSFLIT 226

Query: 61  SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 120
            +LGMAKVLG+IGRA KAVE Y+R I++LE +RG E+ DLV+PL SLG+L +KEGK  DA
Sbjct: 227 PILGMAKVLGTIGRAGKAVECYNRAISLLESSRGFENEDLVIPLISLGNLMLKEGKGKDA 286

Query: 121 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 180
           E+ F+RI+ IY K+YGE +G+VGMAM SLA+AKCA G A+EAV L ++AL +IKDSN ++
Sbjct: 287 ETCFARIVNIYEKLYGEKNGKVGMAMYSLANAKCARGEADEAVTLCRRALEIIKDSNDIA 346

Query: 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 240
           LDDS +E MRIDLAELLH++GR  EGRELLEECLLI E+ KGKEHPS V HL+NLAASYS
Sbjct: 347 LDDSTIEKMRIDLAELLHVLGRANEGRELLEECLLINERLKGKEHPSSVKHLVNLAASYS 406

Query: 241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300
           RSKN+VEAERLLRI LDIM K VG DDQSI+ PML+L +TLY+L +D +AE+L LE L I
Sbjct: 407 RSKNYVEAERLLRIGLDIMIKAVGSDDQSITVPMLNLAVTLYNLKQDNDAEQLALEVLRI 466

Query: 301 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK 360
           RE AFGKDSLPVGEALDCLVSIQ+RLG+D+++LL+LLKR+L IQE+EFG + +EV+ TLK
Sbjct: 467 RENAFGKDSLPVGEALDCLVSIQSRLGKDESELLKLLKRILTIQEKEFGEDGKEVIDTLK 526

Query: 361 KVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 395
           K+V  +DKLG K+EKF L+KRLS LRMK+K +++Y
Sbjct: 527 KIVFCMDKLGMKDEKFLLQKRLSMLRMKFKNQMRY 561

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423468|ref|NP_568784.1| kinesin light chain-related protein [Arabidopsis thaliana] gi|53828571|gb|AAU94395.1| At5g53080 [Arabidopsis thaliana] gi|332008918|gb|AED96301.1| kinesin light chain-related protein [Arabidopsis thaliana]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/395 (64%), Positives = 328/395 (83%)

Query: 1   MMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 60
           M++ IVD+LKD EPLLD++L+H+GSMYS +  +E ++LV+QR I +LE+RYGK + LLVT
Sbjct: 170 MINKIVDNLKDSEPLLDSVLMHVGSMYSVIGKFENAILVHQRAIRILENRYGKCNTLLVT 229

Query: 61  SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 120
            LLGMAK   S G+A KA+ +Y R +TILE NRG+ES DLV+PLFSLG L +KEGKA +A
Sbjct: 230 PLLGMAKSFASDGKATKAIGVYERTLTILERNRGSESEDLVVPLFSLGKLLLKEGKAAEA 289

Query: 121 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 180
           E  F+ I+ IY K+YGE DGRVGMAMCSLA+AKC+ G+A EAV++Y+ ALR+IKDSNYM+
Sbjct: 290 EIPFTSIVNIYKKIYGERDGRVGMAMCSLANAKCSKGDANEAVDIYRNALRIIKDSNYMT 349

Query: 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 240
           +D+SI+ENMRIDLAELLH VGRG EGRELLEECLLI E++KGK HPS  THL+NLAASYS
Sbjct: 350 IDNSILENMRIDLAELLHFVGRGDEGRELLEECLLINERFKGKNHPSMATHLINLAASYS 409

Query: 241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300
           RSKN+VEAERLLR CL+IM  +VG + QSI+FPML+L +TL  LNRD+EAE++ L+ L I
Sbjct: 410 RSKNYVEAERLLRTCLNIMEVSVGSEGQSITFPMLNLAVTLSQLNRDEEAEQIALKVLRI 469

Query: 301 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK 360
           RE AFG+DSLPVGEALDCLVSIQ RLG DD ++L LLKRV+ IQE+EFG  ++E+++TL+
Sbjct: 470 REKAFGEDSLPVGEALDCLVSIQARLGRDDGEILGLLKRVMMIQEKEFGPSAQELIVTLQ 529

Query: 361 KVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 395
           K++ +L+KL  K++KF  ++RL+ LR +YKQ + Y
Sbjct: 530 KIIHFLEKLEMKDDKFKFRRRLALLRERYKQSLSY 564

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456393|ref|XP_004145934.1| PREDICTED: nephrocystin-3-like [Cucumis sativus]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 257/398 (64%), Positives = 328/398 (82%), Gaps = 3/398 (0%)

Query: 1   MMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 60
           +++ +VDSL D EP LD++LLHMGSMYSTL+ +EKS+ VY+R I+++E ++G+ S  L+T
Sbjct: 167 ILNKVVDSLTDGEPFLDSVLLHMGSMYSTLKKFEKSISVYKRAIDIMEKKFGEDSSFLIT 226

Query: 61  SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 120
            +LGMAKVLG+IGRA KAVE Y+R I++LE +RG E+ DLV+PL SLG+L +KE  A+D 
Sbjct: 227 PILGMAKVLGTIGRAGKAVECYNRAISLLESSRGFENEDLVIPLISLGNLMLKESLALDY 286

Query: 121 ESVFS---RILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN 177
              F    RI+ IY K+YGE +G+VGMAM SLA+AKCA G A+EAV L ++AL +IKDSN
Sbjct: 287 SLTFMAPFRIVNIYEKLYGEKNGKVGMAMYSLANAKCARGEADEAVTLCRRALEIIKDSN 346

Query: 178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA 237
            ++LDDS +E MRIDLAELLH++GR  EGRELLEECLLI E+ KGKEHPS V HL+NLAA
Sbjct: 347 DIALDDSTIEKMRIDLAELLHVLGRANEGRELLEECLLINERLKGKEHPSSVKHLVNLAA 406

Query: 238 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA 297
           SYSRSKN+VEAERLLRI LDIM K VG DDQSI+ PML+L +TLY+L +D +AE+L LE 
Sbjct: 407 SYSRSKNYVEAERLLRIGLDIMIKAVGSDDQSITVPMLNLAVTLYNLKQDNDAEQLALEV 466

Query: 298 LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML 357
           L IRE AFGKDSLPVGEALDCLVSIQ+RLG+D+++LL+LLKR+L IQE+EFG + +EV+ 
Sbjct: 467 LRIRENAFGKDSLPVGEALDCLVSIQSRLGKDESELLKLLKRILTIQEKEFGEDGKEVID 526

Query: 358 TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 395
           TLKK+V  +DKLG K+EKF L+KRLS LRMK+K +++Y
Sbjct: 527 TLKKIVFCMDKLGMKDEKFLLQKRLSMLRMKFKNQMRY 564

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463995|ref|XP_003602279.1| Kinesin light chain [Medicago truncatula] gi|355491327|gb|AES72530.1| Kinesin light chain [Medicago truncatula]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 268/390 (68%), Positives = 319/390 (81%)

Query: 5   IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 64
           +VD+LKDD P LD+I++HMG+MY+TL  +E+S+  YQR + ++E  YGK S +LVT  LG
Sbjct: 190 VVDTLKDDAPHLDSIVMHMGNMYATLNKFEESLNTYQRAVYIVERIYGKDSTILVTPHLG 249

Query: 65  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 124
           MAK LGSIG+A KAVEIY  VIT+LE NRG ES DLV+PL SLG+L +KEG+A DAES F
Sbjct: 250 MAKALGSIGKATKAVEIYQHVITLLESNRGAESKDLVVPLLSLGNLLLKEGRANDAESRF 309

Query: 125 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 184
           SR+L IYTKVYGENDGR+GMAM SLA  KCA G  +EA+ L+K+AL+V+KDSNYMS D+S
Sbjct: 310 SRVLNIYTKVYGENDGRIGMAMSSLAQVKCALGKTDEAIHLFKRALKVMKDSNYMSPDNS 369

Query: 185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 244
           IME MR+DLAELLH  GRGQ+GRE+LEECLLITE+YKGKEHPS  TH++NLA SY+RSKN
Sbjct: 370 IMEKMRVDLAELLHTSGRGQKGREILEECLLITERYKGKEHPSLATHMINLATSYTRSKN 429

Query: 245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA 304
           + EAE LLR  L IM K  G DDQSISFPML L  TLYHL  D+EAEKL LE L IRE A
Sbjct: 430 YAEAEHLLRRSLQIMIKHNGTDDQSISFPMLQLAATLYHLKNDEEAEKLALEVLRIREKA 489

Query: 305 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS 364
           FG  SLPVGEALDCLVSIQ RLG+DD++LLELL+R+L IQE+ FG ESE+V+LTLKK+V 
Sbjct: 490 FGDYSLPVGEALDCLVSIQARLGKDDSELLELLRRILIIQEKGFGHESEQVLLTLKKIVY 549

Query: 365 YLDKLGRKEEKFPLKKRLSNLRMKYKQKVQ 394
           YLDKLGRK+EK PL++RLS LR KYK  + 
Sbjct: 550 YLDKLGRKDEKLPLQRRLSVLRKKYKHMIH 579

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	395
TAIR|locus:2168387	564	AT5G53080 [Arabidopsis thalian	1.0	0.700	0.610	2.8e-128
UNIPROTKB|Q5LU72	374	SPO1186 "TPR domain protein" [	0.718	0.759	0.272	6.5e-16
TIGR_CMR|SPO_1186	374	SPO_1186 "TPR domain protein"	0.718	0.759	0.272	6.5e-16
ASPGD|ASPL0000018313	1288	AN3547 [Emericella nidulans (t	0.896	0.274	0.254	3e-15
UNIPROTKB|E1BSU8	1316	NPHP3 "Uncharacterized protein	0.420	0.126	0.315	1.5e-14
UNIPROTKB|Q6AZT7	1300	nphp3 "Nephrocystin-3" [Xenopu	0.524	0.159	0.252	1.6e-13
UNIPROTKB|A0JM23	1311	nphp3 "Nephrocystin-3" [Xenopu	0.407	0.122	0.242	2e-08
ZFIN|ZDB-GENE-091204-117	1302	nphp3 "nephronophthisis 3" [Da	0.420	0.127	0.309	2.1e-12
RGD|1563856	1325	Nphp3 "nephronophthisis 3 (ado	0.420	0.125	0.309	2.7e-12
UNIPROTKB|D4A1W7	1325	Acad11 "Acyl-CoA dehydrogenase	0.420	0.125	0.309	2.7e-12

TAIR|locus:2168387 AT5G53080 [Arabidopsis thaliana (taxid:3702)]

 Score = 1259 (448.2 bits), Expect = 2.8e-128, P = 2.8e-128
 Identities = 241/395 (61%), Positives = 314/395 (79%)

Query:     1 MMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 60
             M++ IVD+LKD EPLLD++L+H+GSMYS +  +E ++LV+QR I +LE+RYGK + LLVT
Sbjct:   170 MINKIVDNLKDSEPLLDSVLMHVGSMYSVIGKFENAILVHQRAIRILENRYGKCNTLLVT 229

Query:    61 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 120
              LLGMAK   S G+A KA+ +Y R +TILE NRG+ES DLV+PLFSLG L +KEGKA +A
Sbjct:   230 PLLGMAKSFASDGKATKAIGVYERTLTILERNRGSESEDLVVPLFSLGKLLLKEGKAAEA 289

Query:   121 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 180
             E  F+ I+ IY K+YGE DGRVGMAMCSLA+AKC+ G+A EAV++Y+ ALR+IKDSNYM+
Sbjct:   290 EIPFTSIVNIYKKIYGERDGRVGMAMCSLANAKCSKGDANEAVDIYRNALRIIKDSNYMT 349

Query:   181 LDDSIMENMRIDLAELLHIVXXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYS 240
             +D+SI+ENMRIDLAELLH V               I E++KGK HPS  THL+NLAASYS
Sbjct:   350 IDNSILENMRIDLAELLHFVGRGDEGRELLEECLLINERFKGKNHPSMATHLINLAASYS 409

Query:   241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300
             RSKN+VEAERLLR CL+IM  +VG + QSI+FPML+L +TL  LNRD+EAE++ L+ L I
Sbjct:   410 RSKNYVEAERLLRTCLNIMEVSVGSEGQSITFPMLNLAVTLSQLNRDEEAEQIALKVLRI 469

Query:   301 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK 360
             RE AFG+DSLPVGEALDCLVSIQ RLG DD ++L LLKRV+ IQE+EFG  ++E+++TL+
Sbjct:   470 REKAFGEDSLPVGEALDCLVSIQARLGRDDGEILGLLKRVMMIQEKEFGPSAQELIVTLQ 529

Query:   361 KVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 395
             K++ +L+KL  K++KF  ++RL+ LR +YKQ + Y
Sbjct:   530 KIIHFLEKLEMKDDKFKFRRRLALLRERYKQSLSY 564

GO:0009507 "chloroplast" evidence=ISM

GO:0042802 "identical protein binding" evidence=IEA

UNIPROTKB|Q5LU72 SPO1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 220 (82.5 bits), Expect = 6.5e-16, P = 6.5e-16
 Identities = 78/286 (27%), Positives = 119/286 (41%)

Query:    21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE 80
             L +   Y     + ++  +Y++V+     ++G       T L  +A+VL +  R  +A  
Sbjct:    69 LEVAGRYLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYATRLNNLAEVLRATARYDEAES 128

Query:    81 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 140
             +Y + + I     G E  D  + L +L  L    G+   AE ++   + I  KV GE   
Sbjct:   129 LYRQALEIDREALGLEHPDYGIDLLNLAGLLHDRGRYEAAEPLYREAMTIIGKVVGEEHY 188

Query:   141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV 200
             R   A  +LA         EEA  L ++AL +   S  +    S+      +LAELL   
Sbjct:   189 RYATAQNNLAGLLQDMLRFEEAEALCRQALEIT--SKTLGESHSVYATRLNNLAELLGTT 246

Query:   201 XXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 260
                            IT+K  G+EHP F   L NLA     +  + EAE L R  L+I  
Sbjct:   247 ERYGEAEPLYRQALEITQKTLGEEHPDFAIRLNNLAVLLKATGRYEEAEPLYRQALEITH 306

Query:   261 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 306
             +T+G      +  + +    L    R  EAE L  +AL I E A G
Sbjct:   307 RTLGEAHPDYATRLNNFAGLLDSTERYDEAEPLYRQALEICEKALG 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1186 SPO_1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 220 (82.5 bits), Expect = 6.5e-16, P = 6.5e-16
 Identities = 78/286 (27%), Positives = 119/286 (41%)

Query:    21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE 80
             L +   Y     + ++  +Y++V+     ++G       T L  +A+VL +  R  +A  
Sbjct:    69 LEVAGRYLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYATRLNNLAEVLRATARYDEAES 128

Query:    81 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 140
             +Y + + I     G E  D  + L +L  L    G+   AE ++   + I  KV GE   
Sbjct:   129 LYRQALEIDREALGLEHPDYGIDLLNLAGLLHDRGRYEAAEPLYREAMTIIGKVVGEEHY 188

Query:   141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV 200
             R   A  +LA         EEA  L ++AL +   S  +    S+      +LAELL   
Sbjct:   189 RYATAQNNLAGLLQDMLRFEEAEALCRQALEIT--SKTLGESHSVYATRLNNLAELLGTT 246

Query:   201 XXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 260
                            IT+K  G+EHP F   L NLA     +  + EAE L R  L+I  
Sbjct:   247 ERYGEAEPLYRQALEITQKTLGEEHPDFAIRLNNLAVLLKATGRYEEAEPLYRQALEITH 306

Query:   261 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 306
             +T+G      +  + +    L    R  EAE L  +AL I E A G
Sbjct:   307 RTLGEAHPDYATRLNNFAGLLDSTERYDEAEPLYRQALEICEKALG 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000018313 AN3547 [Emericella nidulans (taxid:162425)]

 Score = 224 (83.9 bits), Expect = 3.0e-15, P = 3.0e-15
 Identities = 94/370 (25%), Positives = 164/370 (44%)

Query:    11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK--TSILLVTSLLGMAKV 68
             D    LD +  ++G++YS     +++  +YQR +   E   G   TS L   + LG+  +
Sbjct:   790 DHTSTLDTVN-NLGNLYSDQGKLKEAEKMYQRALAGKEKALGPDHTSTLDTVNNLGI--L 846

Query:    69 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 128
                 G+ K+A E+Y R +   E   G +    ++ + +LG+L+  +GK  +AE ++ + L
Sbjct:   847 YSDQGKLKEAEEMYQRALAGYEKALGPDHTSTLVTVNNLGNLYSDQGKLKEAEKMYQQAL 906

Query:   129 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 188
             K Y K  G +       + +L       G  +EA E+Y++AL   K+        S ++ 
Sbjct:   907 KGYEKALGPDHTSTLDTVNNLGSLYKNQGKLKEAEEMYQQALAG-KEKALGPDHTSTLDT 965

Query:   189 MRIDLAELLHIVXXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 248
             +  +L  L                     EK  G +H S +  + NL + YS      EA
Sbjct:   966 VN-NLGILYKNQGKLKEAEEMYQRALAGKEKALGPDHTSTLMTVNNLGSLYSDQGKLKEA 1024

Query:   249 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 308
             E++ +  L    K +GPD  S    + +LG       + KEAEK+  +AL   E A G D
Sbjct:  1025 EKMYQQALAGYEKALGPDHTSTLITVNNLGNLYSDQGKLKEAEKMYQQALAGYEKALGPD 1084

Query:   309 ---SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKV-VS 364
                +L     L  L S Q +L E +    ++ ++ L   E+  G +    + T+  + + 
Sbjct:  1085 HTSTLVTVNNLGNLYSDQGKLKEAE----KMYQQALAGYEKAVGPDHTSTLDTVNNLGIL 1140

Query:   365 YLDKLGRKEE 374
             Y D+ G+ +E
Sbjct:  1141 YSDQ-GKLKE 1149

GO:0005871 "kinesin complex" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|E1BSU8 NPHP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
 Identities = 54/171 (31%), Positives = 84/171 (49%)

Query:   218 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 277
             E+  G  HP     L NLAA Y+  K++ +AE L    LDI  + + PD  S+++ + HL
Sbjct:  1110 ERVLGPNHPDCAQSLNNLAALYNEKKHYDKAEELYEKALDIRRRALAPDHPSLAYTVKHL 1169

Query:   278 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 337
              +    + +  +A  L   A+ IR+ +FG     V  AL  L  +  ++ +  T+ L L 
Sbjct:  1170 AVLYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYCQM-KKQTEALPLY 1228

Query:   338 KRVLRIQEREFGSESEEVMLTLKK--VVSYLDKLGRKEEKFPLKKRLSNLR 386
             +R L+I E  FG     V  TLK   V+SY  + G  E+   L KR   ++
Sbjct:  1229 ERALKIYEDSFGHMHPRVGETLKNLAVLSY--EGGDFEKAAELYKRAMEIK 1277

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0048496 "maintenance of organ identity" evidence=IEA

GO:0060027 "convergent extension involved in gastrulation" evidence=IEA

GO:0060993 "kidney morphogenesis" evidence=IEA

GO:0072189 "ureter development" evidence=IEA

GO:0072372 "primary cilium" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|Q6AZT7 nphp3 "Nephrocystin-3" [Xenopus laevis (taxid:8355)]

 Score = 164 (62.8 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
 Identities = 53/210 (25%), Positives = 90/210 (42%)

Query:   179 MSLDDSIMENMRI--DLAELLHIVXXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLA 236
             ++L     +N R   +L  L ++                + E+  G +HP     + NLA
Sbjct:  1056 LTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRSLEMRERVLGADHPDCAQSINNLA 1115

Query:   237 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 296
             A Y+  K + +AE L    LDI  + + PD  S+++ + HL +      +  +A  L   
Sbjct:  1116 ALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYTVKHLAVLYKRKGKLDKAVPLYEL 1175

Query:   297 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVM 356
             A+ IR+ +FG     V  AL  L  +  ++ + D  L  L +R ++I E   G     V 
Sbjct:  1176 AVDIRQKSFGPKHPSVATALVNLAVLYCQMKKQDDAL-PLYERAMKIYEDSLGRMHPRVG 1234

Query:   357 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLR 386
              TLK +     + G  E+   L KR   ++
Sbjct:  1235 ETLKNLAVLRYEEGDYEKAAELYKRAMEIK 1264

GO:0005929 "cilium" evidence=ISS

GO:0060027 "convergent extension involved in gastrulation" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISS

GO:2000095 "regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IMP

UNIPROTKB|A0JM23 nphp3 "Nephrocystin-3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 163 (62.4 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 39/161 (24%), Positives = 79/161 (49%)

Query:    12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 71
             D P     + ++ ++Y+  + Y+K+  +Y+R +++           L  ++  +A +   
Sbjct:  1114 DHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYTVKHLAVLYKR 1173

Query:    72 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 131
              G+  KAV +Y   + I + + G +   +   L +L  L+ +  K  +A  ++ R +KIY
Sbjct:  1174 KGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYCQMKKQAEASPLYERAMKIY 1233

Query:   132 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172
                 G    RVG  + +LA  +   G+ E+A ELYK+A+ +
Sbjct:  1234 EDSLGRMHPRVGETLKNLAVLRYEEGDFEKAAELYKRAMEI 1274

GO:0005929 "cilium" evidence=ISS

GO:0060271 "cilium morphogenesis" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISS

GO:2000095 "regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=ISS

ZFIN|ZDB-GENE-091204-117 nphp3 "nephronophthisis 3" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
 Identities = 53/171 (30%), Positives = 81/171 (47%)

Query:   218 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 277
             ++  G +HP     L NLAA +S  K +  AE L    LDI  + + PD  S+++ + HL
Sbjct:  1096 QRVLGPDHPDCAQSLNNLAALHSERKEYESAEELYERALDIRKRALAPDHPSLAYTLKHL 1155

Query:   278 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 337
              +      + ++A  L   AL IRE +FG     V  AL  L  +  +L +  +  L L 
Sbjct:  1156 AMLYKRRGKLEKAVPLYELALEIREKSFGPKHPSVATALVNLAVLYCQL-KQHSDALPLY 1214

Query:   338 KRVLRIQEREFGSESEEVMLTLKK--VVSYLDKLGRKEEKFPLKKRLSNLR 386
             +R L++ E   G     V  TLK   V+SY +  G  E+   L KR   ++
Sbjct:  1215 ERALKVYEDSLGRLHPRVGETLKNLAVLSYEE--GDFEKAAELYKRAMEIK 1263

GO:0070121 "Kupffer's vesicle development" evidence=IMP

GO:0007601 "visual perception" evidence=IMP

GO:0060026 "convergent extension" evidence=IMP

GO:0003146 "heart jogging" evidence=IMP

GO:0060972 "left/right pattern formation" evidence=IMP

RGD|1563856 Nphp3 "nephronophthisis 3 (adolescent)" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
 Identities = 53/171 (30%), Positives = 81/171 (47%)

Query:   218 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 277
             E+  G +HP     L NLAA  +  K +  AE L    LDI  + + PD  S+++ + HL
Sbjct:  1119 ERVLGPDHPDCAQSLNNLAALCNERKQYARAEELYERALDIRRRALAPDHPSLAYTVKHL 1178

Query:   278 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 337
              I      R  +A  L   A+ IR+ +FG     V  AL  L  + +++ +  ++ L L 
Sbjct:  1179 AILYKKTGRVDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLHSQM-KKHSEALPLY 1237

Query:   338 KRVLRIQEREFGSESEEVMLTLKK--VVSYLDKLGRKEEKFPLKKRLSNLR 386
             +R L+I E   G     V  TLK   V+SY +  G  E+   L KR   ++
Sbjct:  1238 ERALKIYEDSLGRMHPRVGETLKNLAVLSYEE--GNFEKAAELYKRAMEIK 1286

GO:0001822 "kidney development" evidence=ISO

GO:0001947 "heart looping" evidence=ISO

GO:0003283 "atrial septum development" evidence=ISO

GO:0005929 "cilium" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=ISO

GO:0007163 "establishment or maintenance of cell polarity" evidence=ISO

GO:0007368 "determination of left/right symmetry" evidence=ISO

GO:0030198 "extracellular matrix organization" evidence=ISO

GO:0030324 "lung development" evidence=ISO

GO:0030814 "regulation of cAMP metabolic process" evidence=ISO

GO:0035469 "determination of pancreatic left/right asymmetry" evidence=ISO

GO:0045494 "photoreceptor cell maintenance" evidence=ISO

GO:0048496 "maintenance of organ identity" evidence=ISO

GO:0060027 "convergent extension involved in gastrulation" evidence=ISO

GO:0060271 "cilium morphogenesis" evidence=ISO

GO:0060993 "kidney morphogenesis" evidence=ISO

GO:0071908 "determination of intestine left/right asymmetry" evidence=ISO

GO:0071909 "determination of stomach left/right asymmetry" evidence=ISO

GO:0071910 "determination of liver left/right asymmetry" evidence=ISO

GO:0072189 "ureter development" evidence=ISO

GO:0072372 "primary cilium" evidence=ISO

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISO

UNIPROTKB|D4A1W7 Acad11 "Acyl-CoA dehydrogenase family member 11" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
 Identities = 53/171 (30%), Positives = 81/171 (47%)

Query:   218 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 277
             E+  G +HP     L NLAA  +  K +  AE L    LDI  + + PD  S+++ + HL
Sbjct:  1119 ERVLGPDHPDCAQSLNNLAALCNERKQYARAEELYERALDIRRRALAPDHPSLAYTVKHL 1178

Query:   278 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 337
              I      R  +A  L   A+ IR+ +FG     V  AL  L  + +++ +  ++ L L 
Sbjct:  1179 AILYKKTGRVDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLHSQM-KKHSEALPLY 1237

Query:   338 KRVLRIQEREFGSESEEVMLTLKK--VVSYLDKLGRKEEKFPLKKRLSNLR 386
             +R L+I E   G     V  TLK   V+SY +  G  E+   L KR   ++
Sbjct:  1238 ERALKIYEDSLGRMHPRVGETLKNLAVLSYEE--GNFEKAAELYKRAMEIK 1286

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0048496 "maintenance of organ identity" evidence=IEA

GO:0060027 "convergent extension involved in gastrulation" evidence=IEA

GO:0060993 "kidney morphogenesis" evidence=IEA

GO:0072189 "ureter development" evidence=IEA

GO:0072372 "primary cilium" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00037240001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (542 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00004706001	SubName- Full=Chromosome undetermined scaffold_784, whole genome shotgun sequence; (220 aa)			•						0.504
	GSVIVG00032964001	SubName- Full=Chromosome chr14 scaffold_63, whole genome shotgun sequence; (224 aa)			•						0.482

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	395
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	6e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
pfam13374	42	pfam13374, TPR_10, Tetratricopeptide repeat	0.003

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 13/77 (16%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG 73
          P L A L ++  +   L +Y++++ + ++ + +     G+       +L  +A++  ++G
Sbjct: 2  PDLAAALNNLALVLRRLGDYDEALELLEKALELAR-ELGEDHPETARALNNLARLYLALG 60

Query: 74 RAKKAVEIYHRVITILE 90
             +A+E   + + + E
Sbjct: 61 DYDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 104 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 163
           L +L  +  + G   +A  +  + L++  +  GE+      A+ +LA    A G+ +EA+
Sbjct: 8   LNNLALVLRRLGDYDEALELLEKALELA-RELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 164 ELYKKALRVIKD 175
           E  +KAL + + 
Sbjct: 67  EYLEKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 193 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 252
           LA +L  +G   E  ELLE+ L +  +  G++HP     L NLA  Y    ++ EA   L
Sbjct: 11  LALVLRRLGDYDEALELLEKALELAREL-GEDHPETARALNNLARLYLALGDYDEALEYL 69

Query: 253 RICLDIMTK 261
              L +   
Sbjct: 70  EKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 284
           HP     L NLA    R  ++ EA  LL   L++  + +G D    +  + +L      L
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALEL-ARELGEDHPETARALNNLARLYLAL 59

Query: 285 NRDKEAEKLVLEALYIRE 302
               EA + + +AL +RE
Sbjct: 60  GDYDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 57  LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK 116
            L  +L  +A VL  +G   +A+E+  + + +     G +  +    L +L  L++  G 
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALELARE-LGEDHPETARALNNLARLYLALGD 61

Query: 117 AVDAESVFSRILKIYTK 133
             +A     + L +   
Sbjct: 62  YDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 62  LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 121
           LL +  +   +G   +A+E Y +    LEL+     A      ++L + + K GK  +A 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKA---LELDPDNADA-----YYNLAAAYYKLGKYEEAL 54

Query: 122 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172
             + + L++              A  +L  A    G  EEA+E Y+KAL +
Sbjct: 55  EDYEKALELDPDNA--------KAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 18/114 (15%)

Query: 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 204
           A+ +L +     G+ +EA+E Y+KAL +  D +              +LA   + +G+ +
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADA--------YYNLAAAYYKLGKYE 51

Query: 205 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 258
           E  E  E+ L +         P       NL  +Y +   + EA       L++
Sbjct: 52  EALEDYEKALELD--------PDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 274 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 308
           + +L   L    R +EAE+L+ EAL IR    G D
Sbjct: 5   LNNLARALRAQGRYEEAEELLEEALAIRRRVLGPD 39

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	395
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.98
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.96
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.95
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.95
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.95
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.95
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.94
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.94
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.93
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.93
KOG1126	638	consensus DNA-binding cell division cycle control	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.91
KOG1126	638	consensus DNA-binding cell division cycle control	99.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.91
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.91
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.91
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.9
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.9
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.9
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.89
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.87
KOG2076	895	consensus RNA polymerase III transcription factor	99.85
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.85
PLN03218	1060	maturation of RBCL 1; Provisional	99.85
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.85
PLN03218	1060	maturation of RBCL 1; Provisional	99.85
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.84
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.84
KOG2003	840	consensus TPR repeat-containing protein [General f	99.84
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.83
PRK04841	903	transcriptional regulator MalT; Provisional	99.83
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.83
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.83
PRK12370	553	invasion protein regulator; Provisional	99.83
KOG1129	478	consensus TPR repeat-containing protein [General f	99.83
KOG2003	840	consensus TPR repeat-containing protein [General f	99.83
KOG1129	478	consensus TPR repeat-containing protein [General f	99.82
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.82
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.82
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.82
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.82
PRK12370	553	invasion protein regulator; Provisional	99.82
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.81
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.8
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.8
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.8
PRK11189	296	lipoprotein NlpI; Provisional	99.8
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.79
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.79
PRK11189	296	lipoprotein NlpI; Provisional	99.79
KOG2076	895	consensus RNA polymerase III transcription factor	99.79
PRK04841	903	transcriptional regulator MalT; Provisional	99.79
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.78
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.77
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.77
PRK14574	822	hmsH outer membrane protein; Provisional	99.75
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.75
PRK14574	822	hmsH outer membrane protein; Provisional	99.75
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.74
KOG1125	579	consensus TPR repeat-containing protein [General f	99.74
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.74
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.73
PLN03077	857	Protein ECB2; Provisional	99.72
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.72
KOG1125	579	consensus TPR repeat-containing protein [General f	99.71
PLN03077	857	Protein ECB2; Provisional	99.71
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.7
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.7
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.7
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.68
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.67
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.67
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.65
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.64
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.63
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.61
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.6
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.59
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.55
PLN02789	320	farnesyltranstransferase	99.54
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.53
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.51
PLN02789	320	farnesyltranstransferase	99.5
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.47
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.47
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.47
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.46
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.46
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.46
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.43
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.42
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.38
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.38
PRK15359	144	type III secretion system chaperone protein SscB;	99.37
PRK15359	144	type III secretion system chaperone protein SscB;	99.37
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.36
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	99.34
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.34
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.33
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.32
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.32
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.31
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.3
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.29
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.29
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.28
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.28
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.27
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.27
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	99.27
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.26
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.26
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.25
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.24
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.24
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.24
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.22
KOG1585	308	consensus Protein required for fusion of vesicles	99.22
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.2
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.2
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.19
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.19
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.18
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.17
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.17
KOG1585	308	consensus Protein required for fusion of vesicles	99.16
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.16
KOG0553	304	consensus TPR repeat-containing protein [General f	99.16
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.15
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.15
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.14
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.1
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.1
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.09
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.09
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.08
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.08
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	99.06
KOG0553	304	consensus TPR repeat-containing protein [General f	99.06
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.05
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.04
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.02
PF12688	120	TPR_5: Tetratrico peptide repeat	99.02
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.99
PF12688	120	TPR_5: Tetratrico peptide repeat	98.96
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.94
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.93
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.93
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.92
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.9
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.89
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.89
KOG1586	288	consensus Protein required for fusion of vesicles	98.86
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.85
PRK10803	263	tol-pal system protein YbgF; Provisional	98.84
PRK10803	263	tol-pal system protein YbgF; Provisional	98.84
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.83
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.82
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.8
KOG1586	288	consensus Protein required for fusion of vesicles	98.8
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.79
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.77
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.77
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.77
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.76
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.76
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.75
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.75
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.74
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.72
KOG4555	175	consensus TPR repeat-containing protein [Function	98.68
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.67
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.66
PRK15331	165	chaperone protein SicA; Provisional	98.65
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.63
KOG4555	175	consensus TPR repeat-containing protein [Function	98.63
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.63
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.61
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.59
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.56
PRK15331	165	chaperone protein SicA; Provisional	98.54
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.49
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.48
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.47
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.46
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.45
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.45
PRK11906	458	transcriptional regulator; Provisional	98.45
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.45
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.45
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.43
COG5159	421	RPN6 26S proteasome regulatory complex component [	98.41
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.38
PF13512	142	TPR_18: Tetratricopeptide repeat	98.38
PF13512	142	TPR_18: Tetratricopeptide repeat	98.37
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.37
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.37
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.37
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.37
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.33
KOG4234	271	consensus TPR repeat-containing protein [General f	98.33
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.33
KOG2471	696	consensus TPR repeat-containing protein [General f	98.33
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.32
KOG4234	271	consensus TPR repeat-containing protein [General f	98.29
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.26
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.23
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.22
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.2
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.2
PRK11906	458	transcriptional regulator; Provisional	98.19
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.19
PF13371	73	TPR_9: Tetratricopeptide repeat	98.19
PF13371	73	TPR_9: Tetratricopeptide repeat	98.18
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.17
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.13
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.08
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	98.08
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.04
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.04
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.03
KOG2471	696	consensus TPR repeat-containing protein [General f	97.99
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.99
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.96
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.96
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.95
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.92
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.86
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.84
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.83
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.83
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.82
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.81
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.8
COG5159	421	RPN6 26S proteasome regulatory complex component [	97.77
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.77
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.76
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.75
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.74
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.72
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.7
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.68
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.67
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.66
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.64
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.61
KOG1463	411	consensus 26S proteasome regulatory complex, subun	97.61
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.59
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.57
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.57
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.57
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.5
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.49
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.49
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.49
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.43
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.42
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.39
PF13428	44	TPR_14: Tetratricopeptide repeat	97.38
PF13428	44	TPR_14: Tetratricopeptide repeat	97.37
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.35
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.32
PF13431	34	TPR_17: Tetratricopeptide repeat	97.3
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.25
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.22
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.22
KOG3783	546	consensus Uncharacterized conserved protein [Funct	97.22
PF13431	34	TPR_17: Tetratricopeptide repeat	97.2
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.13
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.09
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.08
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.08
KOG1463	411	consensus 26S proteasome regulatory complex, subun	96.97
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.73
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.73
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.64
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.62
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.61
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.53
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.42
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.38
PRK14707	2710	hypothetical protein; Provisional	96.38
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.32
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.3
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.22
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.2
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.07
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.05
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.03
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	96.01
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.01
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	95.96
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	95.95
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	95.79
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.78
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.67
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.65
PRK14707	2710	hypothetical protein; Provisional	95.62
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.58
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.45
KOG0687	393	consensus 26S proteasome regulatory complex, subun	95.29
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.24
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.14
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.01
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.93
KOG4507	886	consensus Uncharacterized conserved protein, conta	94.91
COG5187	412	RPN7 26S proteasome regulatory complex component,	94.86
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.83
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	94.71
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.71
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.53
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.46
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	94.46
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.45
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.45
KOG3364	149	consensus Membrane protein involved in organellar	94.35
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.3
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	93.94
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.73
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.65
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	93.6
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.55
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	93.5
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	93.46
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	93.31
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	93.29
KOG0508	615	consensus Ankyrin repeat protein [General function	93.19
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	93.19
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	93.11
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.99
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	92.89
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.87
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	92.86
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.6
PRK10941	269	hypothetical protein; Provisional	92.51
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.5
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	92.49
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	92.44
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	92.43
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.33
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	92.2
KOG0508	615	consensus Ankyrin repeat protein [General function	92.04
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	91.88
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	91.82
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	91.8
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.52
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	91.37
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	91.31
PRK10941	269	hypothetical protein; Provisional	91.09
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	90.85
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	90.81
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	90.56
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.32
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.28
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.19
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	90.11
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.01
KOG4814	872	consensus Uncharacterized conserved protein [Funct	89.83
COG5187	412	RPN7 26S proteasome regulatory complex component,	89.66
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	89.66
PF12854	34	PPR_1: PPR repeat	89.62
KOG4563	400	consensus Cell cycle-regulated histone H1-binding	89.38
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	89.3
KOG3364	149	consensus Membrane protein involved in organellar	89.17
KOG0687	393	consensus 26S proteasome regulatory complex, subun	88.99
PF12854	34	PPR_1: PPR repeat	88.91
PF13041	50	PPR_2: PPR repeat family	88.9
COG3947	361	Response regulator containing CheY-like receiver a	88.87
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.69
COG3947	361	Response regulator containing CheY-like receiver a	87.88
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	87.78
KOG4014	248	consensus Uncharacterized conserved protein (conta	87.5
COG4976	287	Predicted methyltransferase (contains TPR repeat)	87.38
KOG1258	577	consensus mRNA processing protein [RNA processing	86.97
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	86.83
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	86.81
PF13041	50	PPR_2: PPR repeat family	86.62
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	86.62
KOG4563	400	consensus Cell cycle-regulated histone H1-binding	86.41
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	86.41
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	86.16
PHA02537	230	M terminase endonuclease subunit; Provisional	85.88
COG4976	287	Predicted methyltransferase (contains TPR repeat)	85.74
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	85.49
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	85.13
PRK09169	2316	hypothetical protein; Validated	83.69
PRK09169	2316	hypothetical protein; Validated	83.23
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	82.99
KOG2908	380	consensus 26S proteasome regulatory complex, subun	82.79
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	82.24
KOG1310	758	consensus WD40 repeat protein [General function pr	81.96
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	81.9
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	80.99
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	80.49
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	80.29

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=1.3e-36  Score=255.24  Aligned_cols=313  Identities=28%  Similarity=0.385  Sum_probs=295.2

Q ss_pred             hhhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHH
Q 016114            5 IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR   84 (395)
Q Consensus         5 ~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   84 (395)
                      ..+.++..+|....+...++..|..+|+|++|+..+++++++..+..+..++.....+..+|.+|..++++.+|+..|++
T Consensus       187 ~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~  266 (508)
T KOG1840|consen  187 QAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE  266 (508)
T ss_pred             HHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            45677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 016114           85 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  164 (395)
Q Consensus        85 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  164 (395)
                      |+.+.+...|+++|.++.++.+||.+|...|++++|..++++|+++.++..+..++.+...+.+++.++...+++++|..
T Consensus       267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~  346 (508)
T KOG1840|consen  267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK  346 (508)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhc
Q 016114          165 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  244 (395)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  244 (395)
                      ++++++++....  ++++++.+..++.++|.+|..+|++++|.+++++|+.+.++..+..++.....++++|..|.+.++
T Consensus       347 l~q~al~i~~~~--~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~  424 (508)
T KOG1840|consen  347 LLQKALKIYLDA--PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK  424 (508)
T ss_pred             HHHHHHHHHHhh--ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence            999999999865  788888999999999999999999999999999999999999888888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 016114          245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  320 (395)
Q Consensus       245 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  320 (395)
                      +.+|...|.++..+. +..|+++|++...+.+|+.+|..+|+++.|+++.+.++...+..++..++.....-..++
T Consensus       425 ~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (508)
T KOG1840|consen  425 YEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLA  499 (508)
T ss_pred             cchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhh
Confidence            999999999999999 889999999999999999999999999999999999999999988887776654443333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=2.4e-36  Score=253.69  Aligned_cols=328  Identities=23%  Similarity=0.286  Sum_probs=303.5

Q ss_pred             HHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHc
Q 016114           35 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE  114 (395)
Q Consensus        35 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~  114 (395)
                      ...........+..+..+..+|....+...++..|...|+|++|+..+++++++..+..|.+++.+......+|.+|..+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~  254 (508)
T KOG1840|consen  175 SSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL  254 (508)
T ss_pred             ccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh
Confidence            45555555556666666778888899999999999999999999999999999999988889999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHH
Q 016114          115 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA  194 (395)
Q Consensus       115 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la  194 (395)
                      +++.+|+.+|++|+.+.+..+|+++|.++.++.+||.+|...|++++|..++++|+++.++.  .+..++.+...+.+++
T Consensus       255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--~~~~~~~v~~~l~~~~  332 (508)
T KOG1840|consen  255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--LGASHPEVAAQLSELA  332 (508)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--hccChHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999985  6778899999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHH
Q 016114          195 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM  274 (395)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  274 (395)
                      .++..++++++|..++++++++.....+++++.....+.+||.+|..+|++++|.+++++++.+.++..+..++.+...+
T Consensus       333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l  412 (508)
T KOG1840|consen  333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL  412 (508)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888889999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHH
Q 016114          275 LHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE  354 (395)
Q Consensus       275 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  354 (395)
                      ..+|..|.+.+++.+|...|.++..+. ..+|+++|++...+.+|+.+|..+|+++ +|+++.++++...+...+..+|.
T Consensus       413 ~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e-~a~~~~~~~~~~~~~~~~~~~~~  490 (508)
T KOG1840|consen  413 NQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYE-AAEELEEKVLNAREQRLGTASPT  490 (508)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHHcCCCCCcc
Confidence            999999999999999999999999999 8899999999999999999999999999 99999999999999988888877


Q ss_pred             HHHHHHHHHHHH
Q 016114          355 VMLTLKKVVSYL  366 (395)
Q Consensus       355 ~~~~~~~la~~~  366 (395)
                      ....-..++...
T Consensus       491 ~~~~~~~~~~~~  502 (508)
T KOG1840|consen  491 VEDEKLRLADLS  502 (508)
T ss_pred             hhHHHHhhhHHH
Confidence            665554444443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-39  Score=266.39  Aligned_cols=322  Identities=17%  Similarity=0.216  Sum_probs=259.4

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC--------------------------cChHHHHHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG--------------------------KTSILLVTSLLGM   65 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------------------~~~~~~~~~~~~l   65 (395)
                      ..|...++|.++|.++...|+.+.|...|.+++++.+....                          ...|..+.+|.+|
T Consensus       145 l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnL  224 (966)
T KOG4626|consen  145 LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNL  224 (966)
T ss_pred             cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhc
Confidence            34555666666666666666666666666666554211000                          0123444566677


Q ss_pred             HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 016114           66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  145 (395)
Q Consensus        66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  145 (395)
                      |.++...|+...|+..|++|+.+        +|....+|.+||.+|...+.|++|+..|.+|+.+        .|..+.+
T Consensus       225 g~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a  288 (966)
T KOG4626|consen  225 GCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVA  288 (966)
T ss_pred             chHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhh
Confidence            77777777777777777777765        6788888899999999999999999999888875        5777788


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCC
Q 016114          146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH  225 (395)
Q Consensus       146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  225 (395)
                      +.++|.+|..+|..+-|+..|++++++       .|   ....+++|+|..+-..|+..+|+.+|++++.+.        
T Consensus       289 ~gNla~iYyeqG~ldlAI~~Ykral~~-------~P---~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------  350 (966)
T KOG4626|consen  289 HGNLACIYYEQGLLDLAIDTYKRALEL-------QP---NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--------  350 (966)
T ss_pred             ccceEEEEeccccHHHHHHHHHHHHhc-------CC---CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------
Confidence            889999999999999999999998874       22   235578999999999999999999999999863        


Q ss_pred             hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc
Q 016114          226 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  305 (395)
Q Consensus       226 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  305 (395)
                      |..+.++++||.+|.++|.+++|..+|.++++.        .|..+.+..+||.+|..+|++++|+.+|++++++.    
T Consensus       351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~----  418 (966)
T KOG4626|consen  351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK----  418 (966)
T ss_pred             CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC----
Confidence            455678899999999999999999999999984        57788889999999999999999999999999865    


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHH
Q 016114          306 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  385 (395)
Q Consensus       306 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  385 (395)
                          |..+.++.++|..|..+|+.. .|+..|.+|+.+        +|..++++.+||.+|...|+..+|+..|+.++.+
T Consensus       419 ----P~fAda~~NmGnt~ke~g~v~-~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl  485 (966)
T KOG4626|consen  419 ----PTFADALSNMGNTYKEMGDVS-AAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL  485 (966)
T ss_pred             ----chHHHHHHhcchHHHHhhhHH-HHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence                778889999999999999999 999999999974        6888999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 016114          386 RMKYKQK  392 (395)
Q Consensus       386 ~~~~~~~  392 (395)
                      .+++.+.
T Consensus       486 kPDfpdA  492 (966)
T KOG4626|consen  486 KPDFPDA  492 (966)
T ss_pred             CCCCchh
Confidence            8877653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=6.9e-38  Score=257.94  Aligned_cols=323  Identities=18%  Similarity=0.190  Sum_probs=263.6

Q ss_pred             CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114           11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   90 (395)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   90 (395)
                      ...|..+++|.++|+++...|++++|+.+|+.++++        .|..++++.++|.++...|+.+.|...|.+++++..
T Consensus       110 r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel--------~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP  181 (966)
T KOG4626|consen  110 RKNPQGAEAYSNLANILKERGQLQDALALYRAAIEL--------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNP  181 (966)
T ss_pred             hccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc
Confidence            356888999999999999999999999999999986        356777888888888888888888877777776521


Q ss_pred             Hhc-------------C-------------CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 016114           91 LNR-------------G-------------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  144 (395)
Q Consensus        91 ~~~-------------~-------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  144 (395)
                      ...             |             ...|..+.+|.+||.++..+|+...|+..|++|+.+        +|....
T Consensus       182 ~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~d  253 (966)
T KOG4626|consen  182 DLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLD  253 (966)
T ss_pred             chhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchH
Confidence            000             0             013445556666777777777777777777777665        677778


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114          145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  224 (395)
Q Consensus       145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  224 (395)
                      +|.+||.+|...+.+++|+..|.+|+.+.       |   ..+.++.|+|.+|..+|..+-|+..|++++++        
T Consensus       254 AYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-------p---n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------  315 (966)
T KOG4626|consen  254 AYINLGNVYKEARIFDRAVSCYLRALNLR-------P---NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------  315 (966)
T ss_pred             HHhhHHHHHHHHhcchHHHHHHHHHHhcC-------C---cchhhccceEEEEeccccHHHHHHHHHHHHhc--------
Confidence            88889999999999999999888888742       2   23566788899999999999999999998875        


Q ss_pred             ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 016114          225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  304 (395)
Q Consensus       225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  304 (395)
                      .|....++++||..+...|+..+|+.+|.+++.+        .|..+.++.+||.+|.++|.+++|..+|+++++..   
T Consensus       316 ~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~---  384 (966)
T KOG4626|consen  316 QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF---  384 (966)
T ss_pred             CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC---
Confidence            4667788999999999999999999999999884        45667788999999999999999999999998865   


Q ss_pred             cCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHH
Q 016114          305 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  384 (395)
Q Consensus       305 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  384 (395)
                           |+.+.+..+||.+|.++|+.+ +|+.+|++++.+        .|..++++.++|.+|..+|+.+.|+..|.+|+.
T Consensus       385 -----p~~aaa~nNLa~i~kqqgnl~-~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~  450 (966)
T KOG4626|consen  385 -----PEFAAAHNNLASIYKQQGNLD-DAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ  450 (966)
T ss_pred             -----hhhhhhhhhHHHHHHhcccHH-HHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence                 777888999999999999999 999999999975        577889999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 016114          385 LRMKYKQK  392 (395)
Q Consensus       385 ~~~~~~~~  392 (395)
                      +.+.+.+.
T Consensus       451 ~nPt~AeA  458 (966)
T KOG4626|consen  451 INPTFAEA  458 (966)
T ss_pred             cCcHHHHH
Confidence            88877553

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.1e-29  Score=229.06  Aligned_cols=322  Identities=16%  Similarity=0.149  Sum_probs=243.4

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHH----------
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT----------   87 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------   87 (395)
                      ..+.++|.+|...|++++|+..+.+++++        .|....++..+|.++...|++++|+..+..+..          
T Consensus       161 ~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~  232 (615)
T TIGR00990       161 VYYSNRAACHNALGDWEKVVEDTTAALEL--------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSA  232 (615)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHH
Confidence            35677777777778888888877777765        244567788888888889998888765543321          


Q ss_pred             --------------------------------------------------------------------------------
Q 016114           88 --------------------------------------------------------------------------------   87 (395)
Q Consensus        88 --------------------------------------------------------------------------------   87 (395)
                                                                                                      
T Consensus       233 ~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~  312 (615)
T TIGR00990       233 QAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEE  312 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHH
Confidence                                                                                            


Q ss_pred             ---HHHHhcC--CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 016114           88 ---ILELNRG--TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA  162 (395)
Q Consensus        88 ---~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  162 (395)
                         .++....  ...|....++..+|.++..+|++++|+..+++++.+        +|....++..+|.++...|++++|
T Consensus       313 A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA  384 (615)
T TIGR00990       313 AARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKA  384 (615)
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHH
Confidence               1111110  113445566778888888899999999999998875        455667888899999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh
Q 016114          163 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS  242 (395)
Q Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  242 (395)
                      +..++++++.       .++.   ..++..+|.++...|++++|+..|++++.+        .|.....+.++|.++...
T Consensus       385 ~~~~~~al~~-------~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~  446 (615)
T TIGR00990       385 EEDFDKALKL-------NSED---PDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKE  446 (615)
T ss_pred             HHHHHHHHHh-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHC
Confidence            9999999875       2333   346688999999999999999999999875        345566788999999999


Q ss_pred             hcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 016114          243 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI  322 (395)
Q Consensus       243 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~  322 (395)
                      |++++|+..+++++..        .|....++..+|.++...|++++|+..|++++.+.... .+.+......+...+..
T Consensus       447 g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~  517 (615)
T TIGR00990       447 GSIASSMATFRRCKKN--------FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALAL  517 (615)
T ss_pred             CCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHH
Confidence            9999999999999873        46667788999999999999999999999999875321 11112222222333344


Q ss_pred             HHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHh
Q 016114          323 QTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  391 (395)
Q Consensus       323 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  391 (395)
                      +...|+++ +|..++++++.+        +|+...++..+|.++..+|++++|+.+|++++++.+..++
T Consensus       518 ~~~~~~~~-eA~~~~~kAl~l--------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e  577 (615)
T TIGR00990       518 FQWKQDFI-EAENLCEKALII--------DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE  577 (615)
T ss_pred             HHHhhhHH-HHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence            45578999 999999999875        2334557889999999999999999999999999886544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.98  E-value=1.1e-28  Score=222.51  Aligned_cols=321  Identities=14%  Similarity=0.132  Sum_probs=250.2

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   95 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   95 (395)
                      .+..+..+|..++..|+|++|+..|++++.+.     ++    ...+.++|.+|...|++++|+..+.+++++       
T Consensus       126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~-----p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l-------  189 (615)
T TIGR00990       126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK-----PD----PVYYSNRAACHNALGDWEKVVEDTTAALEL-------  189 (615)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----Cc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------
Confidence            45668899999999999999999999999863     22    236889999999999999999999999986       


Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHH-----------------------------------------------
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL-----------------------------------------------  128 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----------------------------------------------  128 (395)
                       .|....++..+|.+|..+|++++|+..+..+.                                               
T Consensus       190 -~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~  268 (615)
T TIGR00990       190 -DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL  268 (615)
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence             56778899999999999999999976554332                                               


Q ss_pred             ----------------------------------------------HHHHHHhC--CCChhHHHHHHHHHHHHHHCCCHH
Q 016114          129 ----------------------------------------------KIYTKVYG--ENDGRVGMAMCSLAHAKCANGNAE  160 (395)
Q Consensus       129 ----------------------------------------------~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~  160 (395)
                                                                    ..+++...  ...|....++..+|.++...|+++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~  348 (615)
T TIGR00990       269 QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL  348 (615)
T ss_pred             HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH
Confidence                                                          11111111  113455567788888999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH
Q 016114          161 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  240 (395)
Q Consensus       161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  240 (395)
                      +|+..+++++++.       |.   ....+..+|.++...|++++|+..++++++.        +|....++..+|.++.
T Consensus       349 eA~~~~~kal~l~-------P~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~  410 (615)
T TIGR00990       349 EALADLSKSIELD-------PR---VTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHF  410 (615)
T ss_pred             HHHHHHHHHHHcC-------CC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Confidence            9999999988742       22   2456688999999999999999999998875        2444567889999999


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 016114          241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  320 (395)
Q Consensus       241 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  320 (395)
                      ..|++++|+..|++++.+        .|.....+..+|.++...|++++|+..+++++...        |....++..+|
T Consensus       411 ~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg  474 (615)
T TIGR00990       411 IKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--------PEAPDVYNYYG  474 (615)
T ss_pred             HcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHH
Confidence            999999999999999873        46667788899999999999999999999998753        33345688899


Q ss_pred             HHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          321 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       321 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      .++...|+++ +|+..|++++.+.... .+........+...+.++...|++++|+.++++++.+.++.
T Consensus       475 ~~~~~~g~~~-~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~  541 (615)
T TIGR00990       475 ELLLDQNKFD-EAIEKFDTAIELEKET-KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC  541 (615)
T ss_pred             HHHHHccCHH-HHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence            9999999999 9999999999875431 11112222233333444555799999999999998876543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.96  E-value=8.5e-27  Score=209.63  Aligned_cols=313  Identities=13%  Similarity=0.011  Sum_probs=252.2

Q ss_pred             CCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Q 016114           10 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL   89 (395)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   89 (395)
                      ....|....++..+|......|++++|+..+++++...        |....++..+|.++...|++++|+..+++++.+ 
T Consensus        69 l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l-  139 (656)
T PRK15174         69 VLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA-  139 (656)
T ss_pred             HHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence            34456667778889999999999999999999998862        334567888999999999999999999999986 


Q ss_pred             HHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016114           90 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  169 (395)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  169 (395)
                             .|....++..++.++...|++++|+..+.+++..     .++++   ..+..++ .+...|++++|+..++++
T Consensus       140 -------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-----~P~~~---~a~~~~~-~l~~~g~~~eA~~~~~~~  203 (656)
T PRK15174        140 -------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-----VPPRG---DMIATCL-SFLNKSRLPEDHDLARAL  203 (656)
T ss_pred             -------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-----CCCCH---HHHHHHH-HHHHcCCHHHHHHHHHHH
Confidence                   4666778889999999999999999999977665     22233   2333443 478899999999999988


Q ss_pred             HHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHH--
Q 016114          170 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE--  247 (395)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~--  247 (395)
                      +...      ..+..   .....++.++...|++++|+..+++++..        +|....++.++|.++...|++++  
T Consensus       204 l~~~------~~~~~---~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~  266 (656)
T PRK15174        204 LPFF------ALERQ---ESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSGRSREAK  266 (656)
T ss_pred             HhcC------CCcch---hHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhhH
Confidence            7642      11111   12245688899999999999999999874        34456788899999999999986  


Q ss_pred             --HHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 016114          248 --AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR  325 (395)
Q Consensus       248 --A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~  325 (395)
                        |+..+++++.+        .|....++..+|.++...|++++|+..+++++...     |++   ..++..+|.++..
T Consensus       267 ~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-----P~~---~~a~~~La~~l~~  330 (656)
T PRK15174        267 LQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-----PDL---PYVRAMYARALRQ  330 (656)
T ss_pred             HHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHH
Confidence              78899988873        46677889999999999999999999999998753     443   4467789999999


Q ss_pred             cCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          326 LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       326 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      .|+++ +|+..|++++..        +|........+|.++...|++++|+..|++++++.++.
T Consensus       331 ~G~~~-eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        331 VGQYT-AASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             CCCHH-HHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence            99999 999999998864        23334456667899999999999999999999987664

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.95  E-value=3.3e-25  Score=211.88  Aligned_cols=311  Identities=18%  Similarity=0.141  Sum_probs=160.3

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      +|.....+..++..+...|++++|+..++++++..        |.....+..+|.++...|++++|+..|++++..    
T Consensus       563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----  630 (899)
T TIGR02917       563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA--------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL----  630 (899)
T ss_pred             CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence            34444556677777777788888877777766531        122345667777777777777777777777654    


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                          .|....++..+|.++...|++++|...+++++..        .|....++..++.++...|++++|...++.+.+.
T Consensus       631 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  698 (899)
T TIGR02917       631 ----QPDSALALLLLADAYAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ  698 (899)
T ss_pred             ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                2344456667777777777777777777777654        2222334445555555555555555555544332


Q ss_pred             HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh-------------------------CCCChh
Q 016114          173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK-------------------------GKEHPS  227 (395)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------~~~~~~  227 (395)
                      .       +..   ...+..+|.++...|++++|+..|++++.......                         -...|.
T Consensus       699 ~-------~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  768 (899)
T TIGR02917       699 H-------PKA---ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN  768 (899)
T ss_pred             C-------cCC---hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            1       111   11223445555555555555555555444210000                         000122


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114          228 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  307 (395)
Q Consensus       228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  307 (395)
                      ...++..+|.++...|++++|+..|+++++.        .|....++..++.++...|+ .+|+.++++++...     +
T Consensus       769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-----~  834 (899)
T TIGR02917       769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-----P  834 (899)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-----C
Confidence            2334444555555555555555555554441        22333444445555555555 44555555544431     2


Q ss_pred             CChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHH
Q 016114          308 DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  383 (395)
Q Consensus       308 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  383 (395)
                      +++.   .+..+|.++...|+++ +|+.+++++++..     +.   ...++..++.++...|++++|+..+++++
T Consensus       835 ~~~~---~~~~~~~~~~~~g~~~-~A~~~~~~a~~~~-----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       835 NIPA---ILDTLGWLLVEKGEAD-RALPLLRKAVNIA-----PE---AAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             CCcH---HHHHHHHHHHHcCCHH-HHHHHHHHHHhhC-----CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            2222   2344555555555555 5555555555421     11   23344455555555555555555555543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.95  E-value=6.8e-25  Score=210.49  Aligned_cols=325  Identities=14%  Similarity=0.103  Sum_probs=232.4

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChH------HHHHHHHHHHHHHHhhCchhHHHHHHHHHH
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVI   86 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   86 (395)
                      +|....++..+|.++...|++++|+.+|+++++..+........      ........+|.++...|++++|+..|++++
T Consensus       299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al  378 (1157)
T PRK11447        299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR  378 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45556788999999999999999999999999864321100000      012233456888999999999999999999


Q ss_pred             HHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhH------------------------
Q 016114           87 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV------------------------  142 (395)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~------------------------  142 (395)
                      ..        .|....++..+|.++...|++++|+..|++++++..     +++..                        
T Consensus       379 ~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-----~~~~a~~~L~~l~~~~~~~~A~~~l~~l~  445 (1157)
T PRK11447        379 QV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-----GNTNAVRGLANLYRQQSPEKALAFIASLS  445 (1157)
T ss_pred             Hh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence            87        455667888999999999999999999999987621     11110                        


Q ss_pred             ---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHH
Q 016114          143 ---------------GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR  207 (395)
Q Consensus       143 ---------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  207 (395)
                                     ...+..+|.++...|++++|+..|+++++.       .|+.+   .++..+|.+|...|++++|+
T Consensus       446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-------~P~~~---~~~~~LA~~~~~~G~~~~A~  515 (1157)
T PRK11447        446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-------DPGSV---WLTYRLAQDLRQAGQRSQAD  515 (1157)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCH---HHHHHHHHHHHHcCCHHHHH
Confidence                           112345677788899999999999999885       34443   35688999999999999999


Q ss_pred             HHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH---------------------H-------
Q 016114          208 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI---------------------M-------  259 (395)
Q Consensus       208 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---------------------~-------  259 (395)
                      ..+++++...        |.....+..++..+...+++++|+..++++...                     .       
T Consensus       516 ~~l~~al~~~--------P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G  587 (1157)
T PRK11447        516 ALMRRLAQQK--------PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG  587 (1157)
T ss_pred             HHHHHHHHcC--------CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence            9999988642        223334455555556666666666655432100                     0       


Q ss_pred             -----HHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHH
Q 016114          260 -----TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL  334 (395)
Q Consensus       260 -----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~  334 (395)
                           ...+. .+|.....+..+|.++...|++++|+..|+++++..     |+   ...++..++.++...|+++ +|+
T Consensus       588 ~~~eA~~~l~-~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-----P~---~~~a~~~la~~~~~~g~~~-eA~  657 (1157)
T PRK11447        588 KEAEAEALLR-QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-----PG---NADARLGLIEVDIAQGDLA-AAR  657 (1157)
T ss_pred             CHHHHHHHHH-hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHCCCHH-HHH
Confidence                 00000 234445567889999999999999999999998753     33   3456778888888888888 888


Q ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114          335 ELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  386 (395)
Q Consensus       335 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  386 (395)
                      ..++++++.        .|+...++..+|.++...|++++|..+|++++...
T Consensus       658 ~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        658 AQLAKLPAT--------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             HHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence            888876642        22334556677888888888888888888877654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.95  E-value=4.1e-25  Score=174.55  Aligned_cols=332  Identities=16%  Similarity=0.107  Sum_probs=270.1

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhh
Q 016114           22 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  101 (395)
Q Consensus        22 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  101 (395)
                      .-|.-+++.|++...+.+|+.|++....    +-.....+|..+|..|+..++|.+|+++...-+.+.+.+.  +....+
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGTe----Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg--dklGEA   95 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGTE----DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG--DKLGEA   95 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcch----HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc--chhccc
Confidence            3477788999999999999999987422    2234566788999999999999999999888777766654  445567


Q ss_pred             hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC--------------------HHH
Q 016114          102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN--------------------AEE  161 (395)
Q Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~  161 (395)
                      .+..+||.++...|.|++|+.+..+-+.+.+...  +......+++++|.+|...|+                    ++.
T Consensus        96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~  173 (639)
T KOG1130|consen   96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN  173 (639)
T ss_pred             cccccccchhhhhcccchHHHHHHHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence            7888999999999999999999999999988763  445567899999999988775                    345


Q ss_pred             HHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh
Q 016114          162 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR  241 (395)
Q Consensus       162 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  241 (395)
                      |.++|..-+++.++.    .+......++.+||..|+..|+|+.|+..-+.-+.+.++..  +....-.++.++|.++.-
T Consensus       174 Av~fy~eNL~l~~~l----gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--DrAaeRRA~sNlgN~hif  247 (639)
T KOG1130|consen  174 AVKFYMENLELSEKL----GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--DRAAERRAHSNLGNCHIF  247 (639)
T ss_pred             HHHHHHHHHHHHHHh----hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--hHHHHHHhhcccchhhhh
Confidence            667777777776653    45556678889999999999999999999999999988765  344556788999999999


Q ss_pred             hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 016114          242 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS  321 (395)
Q Consensus       242 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  321 (395)
                      .|+++.|+++|+..+.+..+.  .+....+...+.||..|.-..++++|+.++.+-+.+.++.  .+......+++.||.
T Consensus       248 lg~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLgn  323 (639)
T KOG1130|consen  248 LGNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLGN  323 (639)
T ss_pred             hcccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHH
Confidence            999999999999999988777  3444556778899999999999999999999999998876  445556788999999


Q ss_pred             HHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhh
Q 016114          322 IQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE  374 (395)
Q Consensus       322 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  374 (395)
                      .+...|..+ +|+.+.++.+++..++-.+.  ....+..+|...-...|..+.
T Consensus       324 a~~alg~h~-kAl~fae~hl~~s~ev~D~s--gelTar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  324 AFNALGEHR-KALYFAELHLRSSLEVNDTS--GELTARDNLSDLILELGQEDS  373 (639)
T ss_pred             HHHhhhhHH-HHHHHHHHHHHHHHHhCCcc--hhhhhhhhhHHHHHHhCCCcc
Confidence            999999999 99999999999888764322  234556677777666666543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.95  E-value=1.6e-24  Score=195.04  Aligned_cols=303  Identities=10%  Similarity=0.018  Sum_probs=246.5

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      +...+......|++++|...++..+..        .|....++..+|.+....|++++|+..+++++..        .|.
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~--------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P~  108 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLT--------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--------NVC  108 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHh--------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CCC
Confidence            345566778899999999999998875        2344567888899999999999999999999986        566


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  179 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  179 (395)
                      ...++..+|.++...|++++|+..+++++.+        .|....++..++.++...|++++|+..+++++..       
T Consensus       109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-------  173 (656)
T PRK15174        109 QPEDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-------  173 (656)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-------
Confidence            7788999999999999999999999999986        4555667889999999999999999999987664       


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114          180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  259 (395)
Q Consensus       180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  259 (395)
                      .++++.   .+..++ .+...|++++|+..+++++...       .+........++.++...|++++|+..+++++.. 
T Consensus       174 ~P~~~~---a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-  241 (656)
T PRK15174        174 VPPRGD---MIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-  241 (656)
T ss_pred             CCCCHH---HHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence            233333   223333 4788999999999999876642       1111223356688899999999999999999873 


Q ss_pred             HHhhCCCCcchHHHHHHHHHHHHhcCChHH----HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHH
Q 016114          260 TKTVGPDDQSISFPMLHLGITLYHLNRDKE----AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE  335 (395)
Q Consensus       260 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~  335 (395)
                             +|....++..+|.++...|++++    |+..+++++...        |....++..+|.++...|+++ +|+.
T Consensus       242 -------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~-eA~~  305 (656)
T PRK15174        242 -------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNE-KAIP  305 (656)
T ss_pred             -------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHH-HHHH
Confidence                   46667888999999999999986    788999888754        444567889999999999999 9999


Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          336 LLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       336 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      .+++++..        +|+...++..+|.++...|++++|+..|++++...+..
T Consensus       306 ~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        306 LLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             HHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            99999975        23345667889999999999999999999998776543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.95  E-value=8.5e-24  Score=181.94  Aligned_cols=307  Identities=17%  Similarity=0.164  Sum_probs=239.0

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      .+..|..+...|++++|+..|+++++.        .|....++..+|.++...|++++|+..+++++..    .......
T Consensus        38 ~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~  105 (389)
T PRK11788         38 DYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR----PDLTREQ  105 (389)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC----CCCCHHH
Confidence            456788899999999999999999985        2344677889999999999999999999988753    1111123


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  179 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  179 (395)
                      ...++..+|.+|...|++++|+..|.++++.        +|....++..++.++...|++++|+..++++++...     
T Consensus       106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----  172 (389)
T PRK11788        106 RLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-----  172 (389)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-----
Confidence            3467889999999999999999999998864        344557788999999999999999999999877421     


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114          180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  259 (395)
Q Consensus       180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  259 (395)
                      .+........+..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|...+++++.. 
T Consensus       173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-  243 (389)
T PRK11788        173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--------PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-  243 (389)
T ss_pred             CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence            11222344556789999999999999999999998752        334567888999999999999999999999873 


Q ss_pred             HHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114          260 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR  339 (395)
Q Consensus       260 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  339 (395)
                            +......++..++.+|...|++++|...++++++..     ++.    ..+..++.++...|+++ +|...+++
T Consensus       244 ------~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~----~~~~~la~~~~~~g~~~-~A~~~l~~  307 (389)
T PRK11788        244 ------DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-----PGA----DLLLALAQLLEEQEGPE-AAQALLRE  307 (389)
T ss_pred             ------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc----hHHHHHHHHHHHhCCHH-HHHHHHHH
Confidence                  112234567889999999999999999999988752     332    22478999999999999 99999999


Q ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHHHH--hcchhhhchhhHHHHH
Q 016114          340 VLRIQEREFGSESEEVMLTLKKVVSYLDK--LGRKEEKFPLKKRLSN  384 (395)
Q Consensus       340 al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~  384 (395)
                      +++.        .|+.......++..+..  .|+..+|+..+++.+.
T Consensus       308 ~l~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        308 QLRR--------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             HHHh--------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence            9875        23333333233333322  5689999999998875

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.94  E-value=4.3e-24  Score=205.04  Aligned_cols=319  Identities=16%  Similarity=0.132  Sum_probs=238.4

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh--
Q 016114           22 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD--   99 (395)
Q Consensus        22 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--   99 (395)
                      .+|..+...|++++|+..|+++++..        |....++..+|.++...|++++|+..|+++++..     ++.+.  
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~  340 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRAN--------PKDSEALGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRD  340 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchh
Confidence            45888999999999999999999862        3335678899999999999999999999999863     22211  


Q ss_pred             ---------hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114          100 ---------LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  170 (395)
Q Consensus       100 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  170 (395)
                               .......+|.++...|++++|+..|++++..        +|....++..+|.++...|++++|+..|++++
T Consensus       341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL  412 (1157)
T PRK11447        341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQAL  412 (1157)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                     1123345688899999999999999999987        34445678899999999999999999999999


Q ss_pred             HHHHhcc---------cCCCC-----------------------chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114          171 RVIKDSN---------YMSLD-----------------------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  218 (395)
Q Consensus       171 ~~~~~~~---------~~~~~-----------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  218 (395)
                      ++.....         .....                       .......+..+|.++...|++++|+..|++++++  
T Consensus       413 ~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--  490 (1157)
T PRK11447        413 RMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--  490 (1157)
T ss_pred             HhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence            7532100         00000                       0000122345677788899999999999999875  


Q ss_pred             hhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016114          219 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  298 (395)
Q Consensus       219 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  298 (395)
                            .|....++..+|.+|...|++++|+..+++++..        .|.....++.++..+...|++++|+..++++.
T Consensus       491 ------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--------~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~  556 (1157)
T PRK11447        491 ------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--------KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLP  556 (1157)
T ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence                  3445567889999999999999999999998862        34445566667777777777777777665431


Q ss_pred             HH---------------------H------------HHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 016114          299 YI---------------------R------------EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE  345 (395)
Q Consensus       299 ~~---------------------~------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~  345 (395)
                      ..                     .            ...+. .+|.....+..+|.++...|+++ +|+..|+++++.  
T Consensus       557 ~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-~~p~~~~~~~~La~~~~~~g~~~-~A~~~y~~al~~--  632 (1157)
T PRK11447        557 RAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-QQPPSTRIDLTLADWAQQRGDYA-AARAAYQRVLTR--  632 (1157)
T ss_pred             chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-hCCCCchHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--
Confidence            10                     0            00000 12233345678999999999999 999999999975  


Q ss_pred             hccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114          346 REFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  387 (395)
Q Consensus       346 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  387 (395)
                            .|+...++..++.+|...|++++|+..+++++...+
T Consensus       633 ------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p  668 (1157)
T PRK11447        633 ------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN  668 (1157)
T ss_pred             ------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence                  244467889999999999999999999998876543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.94  E-value=2e-24  Score=206.55  Aligned_cols=316  Identities=19%  Similarity=0.199  Sum_probs=233.8

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   91 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   91 (395)
                      ..|....++..++.++...|++++|+.++.+++...        |.....+..++..+...|++++|+..+++++..   
T Consensus       528 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---  596 (899)
T TIGR02917       528 IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--------PQEIEPALALAQYYLGKGQLKKALAILNEAADA---  596 (899)
T ss_pred             hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc---
Confidence            345566778899999999999999999999998752        233456778999999999999999999998764   


Q ss_pred             hcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114           92 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  171 (395)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  171 (395)
                           .|.....+..+|.++...|++++|+..|+++++.        .|....++..+|.++...|++++|...++++++
T Consensus       597 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  663 (899)
T TIGR02917       597 -----APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--------QPDSALALLLLADAYAVMKNYAKAITSLKRALE  663 (899)
T ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                 3455678899999999999999999999999875        234446788999999999999999999999987


Q ss_pred             HHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHH
Q 016114          172 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  251 (395)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  251 (395)
                      .       .++.   ..++..++.++...|++++|+.+++.....        .|.....+..+|.++...|++++|+..
T Consensus       664 ~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~  725 (899)
T TIGR02917       664 L-------KPDN---TEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--------HPKAALGFELEGDLYLRQKDYPAAIQA  725 (899)
T ss_pred             c-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence            4       2333   345678999999999999999999887653        233334556677777777777777777


Q ss_pred             HHHHHHHH--------------------------HHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc
Q 016114          252 LRICLDIM--------------------------TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  305 (395)
Q Consensus       252 ~~~a~~~~--------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  305 (395)
                      |++++...                          .+.. ...|....++..+|.++...|++++|...|+++++..    
T Consensus       726 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----  800 (899)
T TIGR02917       726 YRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWL-KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA----  800 (899)
T ss_pred             HHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC----
Confidence            77665421                          0000 0133444556666666666777777777766666532    


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHH
Q 016114          306 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  385 (395)
Q Consensus       306 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  385 (395)
                          |....++..++.++...|+ . +|+.++++++..     .+++   ...+..+|.++...|++++|..+++++++.
T Consensus       801 ----p~~~~~~~~l~~~~~~~~~-~-~A~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  866 (899)
T TIGR02917       801 ----PDNAVVLNNLAWLYLELKD-P-RALEYAEKALKL-----APNI---PAILDTLGWLLVEKGEADRALPLLRKAVNI  866 (899)
T ss_pred             ----CCCHHHHHHHHHHHHhcCc-H-HHHHHHHHHHhh-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                2233456667777777776 5 677777777654     2233   345667888999999999999999999887


Q ss_pred             HHH
Q 016114          386 RMK  388 (395)
Q Consensus       386 ~~~  388 (395)
                      .+.
T Consensus       867 ~~~  869 (899)
T TIGR02917       867 APE  869 (899)
T ss_pred             CCC
Confidence            654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.93  E-value=8.6e-24  Score=167.14  Aligned_cols=312  Identities=17%  Similarity=0.151  Sum_probs=251.9

Q ss_pred             hhhhhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHH
Q 016114            3 SGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY   82 (395)
Q Consensus         3 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~   82 (395)
                      +.+++.-.++-.....+|..||+.|+..++|++|+++...-+.+.+..  .+...-+.+..++|..+...|.|++|+.++
T Consensus        41 ~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKssgNLGNtlKv~G~fdeA~~cc  118 (639)
T KOG1130|consen   41 KAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKSSGNLGNTLKVKGAFDEALTCC  118 (639)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccccccccccchhhhhcccchHHHHH
Confidence            334444445556677889999999999999999999988777765543  223345667788999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCC--------------------hHHHHHHHHHHHHHHHHHhCCCChhH
Q 016114           83 HRVITILELNRGTESADLVLPLFSLGSLFIKEGK--------------------AVDAESVFSRILKIYTKVYGENDGRV  142 (395)
Q Consensus        83 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~  142 (395)
                      .+-+.+.++..  +......+++++|.+|...|+                    ++.|.++|..-+++.++..  +....
T Consensus       119 ~rhLd~areLg--Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lg--Dr~aq  194 (639)
T KOG1130|consen  119 FRHLDFARELG--DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLG--DRLAQ  194 (639)
T ss_pred             HHHhHHHHHHh--HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhh--hHHhh
Confidence            99999988875  455667899999999998875                    4556677777777666542  34446


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114          143 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  222 (395)
Q Consensus       143 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  222 (395)
                      ..++.+||..|+-+|+|+.|+...+.-+.+.++.    .+....-.++.++|.++.-.|+++.|+++|+.++.+..+.. 
T Consensus       195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef----GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg-  269 (639)
T KOG1130|consen  195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF----GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG-  269 (639)
T ss_pred             cchhcccCceeeeeccHHHHHHHHHHHHHHHHHh----hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc-
Confidence            6789999999999999999999999999998863    45555667889999999999999999999999999888775 


Q ss_pred             CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114          223 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  302 (395)
Q Consensus       223 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  302 (395)
                       +....+...+.||..|.-..++++|+.++++-+.|.++.  .+......+++.||..+...|..++|+.+.++.+++..
T Consensus       270 -~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~  346 (639)
T KOG1130|consen  270 -NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL  346 (639)
T ss_pred             -chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence             445567788899999999999999999999999998887  44556778899999999999999999999999999988


Q ss_pred             HHcCCCChHHHHHHHHHHHHHHHcCCch
Q 016114          303 IAFGKDSLPVGEALDCLVSIQTRLGEDD  330 (395)
Q Consensus       303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~  330 (395)
                      ++-  +......+..+|.......|..+
T Consensus       347 ev~--D~sgelTar~Nlsdl~~~lG~~d  372 (639)
T KOG1130|consen  347 EVN--DTSGELTARDNLSDLILELGQED  372 (639)
T ss_pred             HhC--CcchhhhhhhhhHHHHHHhCCCc
Confidence            863  22323445567777777777654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8.5e-23  Score=164.72  Aligned_cols=338  Identities=14%  Similarity=0.112  Sum_probs=207.6

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      ...+..+-+.|+-++..|+|++|+.+|.+|+++++     +.   ...+.+++-+|...|+|++.++...+++++     
T Consensus       112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p-----~e---piFYsNraAcY~~lgd~~~Vied~TkALEl-----  178 (606)
T KOG0547|consen  112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCP-----DE---PIFYSNRAACYESLGDWEKVIEDCTKALEL-----  178 (606)
T ss_pred             HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCC-----CC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhc-----
Confidence            45677788999999999999999999999999852     22   345788999999999999999999999997     


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHH------------------HHHHH-----HHHHhCC-------------
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFS------------------RILKI-----YTKVYGE-------------  137 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------~al~~-----~~~~~~~-------------  137 (395)
                         .|+...+++..+..+..+|++++|+.-..                  +.+..     ....+..             
T Consensus       179 ---~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~  255 (606)
T KOG0547|consen  179 ---NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIA  255 (606)
T ss_pred             ---CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence               78889999999999999999998874332                  11111     0000000             


Q ss_pred             ---------------------------------------------------------------C--ChhHHHHHHHHHHH
Q 016114          138 ---------------------------------------------------------------N--DGRVGMAMCSLAHA  152 (395)
Q Consensus       138 ---------------------------------------------------------------~--~~~~~~~~~~la~~  152 (395)
                                                                                     +  -...+.++...|..
T Consensus       256 syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF  335 (606)
T KOG0547|consen  256 SYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF  335 (606)
T ss_pred             HHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence                                                                           0  00123445556666


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhccc---------CC---------------CCchHHHHHHHHHHHHHHHcCChHHHHH
Q 016114          153 KCANGNAEEAVELYKKALRVIKDSNY---------MS---------------LDDSIMENMRIDLAELLHIVGRGQEGRE  208 (395)
Q Consensus       153 ~~~~g~~~~A~~~~~~a~~~~~~~~~---------~~---------------~~~~~~~~~~~~la~~~~~~g~~~~A~~  208 (395)
                      ++-.|++-.|...++.++++....+.         ..               .-++....+|+..|.++.-.+++++|+.
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence            77778888888888777765322100         00               0000111233444444444455555555


Q ss_pred             HHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChH
Q 016114          209 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK  288 (395)
Q Consensus       209 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  288 (395)
                      -|++++.+        +|..+..+..++.+..++++++++...|+.+..        .-|....++...|.++..+++++
T Consensus       416 DF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--------kFP~~~Evy~~fAeiLtDqqqFd  479 (606)
T KOG0547|consen  416 DFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--------KFPNCPEVYNLFAEILTDQQQFD  479 (606)
T ss_pred             HHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCCCchHHHHHHHHHhhHHhHH
Confidence            55555443        244444555555555555555555555555544        23444555555666666666666


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q 016114          289 EAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQT-RLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLD  367 (395)
Q Consensus       289 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  367 (395)
                      +|.+.|..++++.... ...+.. +..+..-|.+.. -.+++. .|+.++++|+++        +|..-.++..||.+..
T Consensus       480 ~A~k~YD~ai~LE~~~-~~~~v~-~~plV~Ka~l~~qwk~d~~-~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~l  548 (606)
T KOG0547|consen  480 KAVKQYDKAIELEPRE-HLIIVN-AAPLVHKALLVLQWKEDIN-QAENLLRKAIEL--------DPKCEQAYETLAQFEL  548 (606)
T ss_pred             HHHHHHHHHHhhcccc-cccccc-chhhhhhhHhhhchhhhHH-HHHHHHHHHHcc--------CchHHHHHHHHHHHHH
Confidence            6666666665543110 000101 111111111111 124444 566666666543        4555678889999999


Q ss_pred             HhcchhhhchhhHHHHHHHHHHHhhhc
Q 016114          368 KLGRKEEKFPLKKRLSNLRMKYKQKVQ  394 (395)
Q Consensus       368 ~~g~~~~A~~~~~~a~~~~~~~~~~~~  394 (395)
                      ++|+.++|+++|+++..+.+...+.++
T Consensus       549 Q~~~i~eAielFEksa~lArt~~E~~~  575 (606)
T KOG0547|consen  549 QRGKIDEAIELFEKSAQLARTESEMVH  575 (606)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence            999999999999999999998877664

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1e-23  Score=176.41  Aligned_cols=308  Identities=16%  Similarity=0.143  Sum_probs=235.1

Q ss_pred             HHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           15 LLDAILLHMGSMYSTL--ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        15 ~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      .....+..+|..|...  -+..+|+..|.+ +       ...++.+.+++..+|..|+.+++|++|..+|+.+-+.    
T Consensus       315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~k-l-------p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~----  382 (638)
T KOG1126|consen  315 ELMELLRGLGEGYRSLSQYNCREALNLFEK-L-------PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI----  382 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence            4566677777777644  344667766666 2       2234455688999999999999999999999988765    


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVF-SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  171 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  171 (395)
                          .|....-.-....+++...+-- ++.++ +..++        .+|....+|..+|.+|..+++++.|+++|++|++
T Consensus       383 ----~p~rv~~meiyST~LWHLq~~v-~Ls~Laq~Li~--------~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ  449 (638)
T KOG1126|consen  383 ----EPYRVKGMEIYSTTLWHLQDEV-ALSYLAQDLID--------TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ  449 (638)
T ss_pred             ----ccccccchhHHHHHHHHHHhhH-HHHHHHHHHHh--------hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc
Confidence                3333333333444555544422 22222 22222        3455567889999999999999999999999988


Q ss_pred             HHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHH
Q 016114          172 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  251 (395)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  251 (395)
                      +-          +..+.+|..+|.-+.....+++|..+|+.|+.+        +|..-.+|+.+|.+|.++++++.|+-+
T Consensus       450 ld----------p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~  511 (638)
T KOG1126|consen  450 LD----------PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFH  511 (638)
T ss_pred             cC----------CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHHH
Confidence            52          223456677888888899999999999999875        456678899999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchh
Q 016114          252 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT  331 (395)
Q Consensus       252 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  331 (395)
                      |++|+++        +|........+|.++.+.|+.++|+.++++|+.+.     +.+|   -..+..+.++...++++ 
T Consensus       512 fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----~kn~---l~~~~~~~il~~~~~~~-  574 (638)
T KOG1126|consen  512 FQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----PKNP---LCKYHRASILFSLGRYV-  574 (638)
T ss_pred             HHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----CCCc---hhHHHHHHHHHhhcchH-
Confidence            9999984        67777788899999999999999999999998754     3333   34678889999999999 


Q ss_pred             HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          332 KLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       332 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                      +|+..+++..++        .|+...++..+|.+|.+.|+.+.|+..|.-|.++.++-.
T Consensus       575 eal~~LEeLk~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~  625 (638)
T KOG1126|consen  575 EALQELEELKEL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA  625 (638)
T ss_pred             HHHHHHHHHHHh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence            899888887654        466678899999999999999999999999888876643

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=4.6e-22  Score=171.21  Aligned_cols=279  Identities=16%  Similarity=0.122  Sum_probs=223.0

Q ss_pred             HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114           60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  139 (395)
Q Consensus        60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  139 (395)
                      ...+..|..+...|++++|+..|+++++.        .|....++..+|.++...|++++|...+++++..     +...
T Consensus        36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~  102 (389)
T PRK11788         36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-----PDLT  102 (389)
T ss_pred             cHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-----CCCC
Confidence            34556688889999999999999999985        4556778999999999999999999999988753     1111


Q ss_pred             -hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114          140 -GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  218 (395)
Q Consensus       140 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  218 (395)
                       .....++..+|.+|...|++++|...|+++++.       .+   ....++..++.++...|++++|+..+++++....
T Consensus       103 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-------~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  172 (389)
T PRK11788        103 REQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-------GD---FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG  172 (389)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-------Cc---chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence             223467889999999999999999999998763       11   2235668899999999999999999999876421


Q ss_pred             hhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016114          219 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  298 (395)
Q Consensus       219 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  298 (395)
                      .   +........+..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|...+++++
T Consensus       173 ~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  241 (389)
T PRK11788        173 D---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERVE  241 (389)
T ss_pred             C---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            1   111223445678999999999999999999999873        34556788899999999999999999999998


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchh
Q 016114          299 YIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPL  378 (395)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  378 (395)
                      ...     +  .....++..++.++...|+.+ +|...++++++..     ++.    .....++.++...|++++|...
T Consensus       242 ~~~-----p--~~~~~~~~~l~~~~~~~g~~~-~A~~~l~~~~~~~-----p~~----~~~~~la~~~~~~g~~~~A~~~  304 (389)
T PRK11788        242 EQD-----P--EYLSEVLPKLMECYQALGDEA-EGLEFLRRALEEY-----PGA----DLLLALAQLLEEQEGPEAAQAL  304 (389)
T ss_pred             HHC-----h--hhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC-----CCc----hHHHHHHHHHHHhCCHHHHHHH
Confidence            642     1  223456778999999999999 9999999988752     322    2337899999999999999999


Q ss_pred             hHHHHHHHHHH
Q 016114          379 KKRLSNLRMKY  389 (395)
Q Consensus       379 ~~~a~~~~~~~  389 (395)
                      ++++++..++.
T Consensus       305 l~~~l~~~P~~  315 (389)
T PRK11788        305 LREQLRRHPSL  315 (389)
T ss_pred             HHHHHHhCcCH
Confidence            99999886654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.91  E-value=1.5e-21  Score=179.66  Aligned_cols=327  Identities=11%  Similarity=-0.017  Sum_probs=227.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      ..++..++.++...|++++|+..++++++.        .|.... +..+|.++...|++++|+..+++++..        
T Consensus        83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------  145 (765)
T PRK10049         83 DDYQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------  145 (765)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence            344456666666677777777777666654        122233 667788888888888888888888876        


Q ss_pred             ChhhhhhHHhHHHHHHHcCChHHHHHHHHH---------------------------------------HHHHHHHHhC-
Q 016114           97 SADLVLPLFSLGSLFIKEGKAVDAESVFSR---------------------------------------ILKIYTKVYG-  136 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---------------------------------------al~~~~~~~~-  136 (395)
                      .|....++..++.++...+..++|+..+++                                       ++..++.... 
T Consensus       146 ~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~  225 (765)
T PRK10049        146 APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL  225 (765)
T ss_pred             CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence            455566666778888777777776655552                                       2222222210 


Q ss_pred             -CCC----hhHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHH
Q 016114          137 -END----GRVGMAMCS-LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL  210 (395)
Q Consensus       137 -~~~----~~~~~~~~~-la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  210 (395)
                       +.+    +....+... ++ .+...|++++|+..|+++++.       ++..|....  ..+|.+|...|++++|+..|
T Consensus       226 ~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~-------~~~~P~~a~--~~la~~yl~~g~~e~A~~~l  295 (765)
T PRK10049        226 WHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAE-------GQIIPPWAQ--RWVASAYLKLHQPEKAQSIL  295 (765)
T ss_pred             cccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhcc-------CCCCCHHHH--HHHHHHHHhcCCcHHHHHHH
Confidence             111    222223332 34 346779999999999998763       222232222  33688999999999999999


Q ss_pred             HHHHHHHHhhhCCCC-hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh---h--CCCCcc--hHHHHHHHHHHHH
Q 016114          211 EECLLITEKYKGKEH-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT---V--GPDDQS--ISFPMLHLGITLY  282 (395)
Q Consensus       211 ~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~--~~~~~~--~~~~~~~la~~~~  282 (395)
                      ++++...     +.. .........++.++...|++++|...++++.......   .  ....|.  ...++..++.++.
T Consensus       296 ~~~l~~~-----p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~  370 (765)
T PRK10049        296 TELFYHP-----ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK  370 (765)
T ss_pred             HHHhhcC-----CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence            9987531     111 1113455677778899999999999999887632100   0  011122  3456778999999


Q ss_pred             hcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 016114          283 HLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKV  362 (395)
Q Consensus       283 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  362 (395)
                      ..|++++|++.+++++...     |++   ...+..+|.++...|+++ +|+..+++++.+        .|+...++..+
T Consensus       371 ~~g~~~eA~~~l~~al~~~-----P~n---~~l~~~lA~l~~~~g~~~-~A~~~l~~al~l--------~Pd~~~l~~~~  433 (765)
T PRK10049        371 YSNDLPQAEMRARELAYNA-----PGN---QGLRIDYASVLQARGWPR-AAENELKKAEVL--------EPRNINLEVEQ  433 (765)
T ss_pred             HcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHhcCCHH-HHHHHHHHHHhh--------CCCChHHHHHH
Confidence            9999999999999998754     333   457889999999999999 999999999975        34455688899


Q ss_pred             HHHHHHhcchhhhchhhHHHHHHHHHHHhh
Q 016114          363 VSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  392 (395)
Q Consensus       363 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  392 (395)
                      |.++...|++++|...++++++..++...+
T Consensus       434 a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~  463 (765)
T PRK10049        434 AWTALDLQEWRQMDVLTDDVVAREPQDPGV  463 (765)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence            999999999999999999999887765544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=3.8e-23  Score=173.05  Aligned_cols=276  Identities=19%  Similarity=0.171  Sum_probs=224.2

Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114            9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   88 (395)
Q Consensus         9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   88 (395)
                      +...++....++..+|..|+..++|++|..+|+.+-++.        |..+.-+-....+++...+-- ++.++-+-+  
T Consensus       345 lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~--------p~rv~~meiyST~LWHLq~~v-~Ls~Laq~L--  413 (638)
T KOG1126|consen  345 LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE--------PYRVKGMEIYSTTLWHLQDEV-ALSYLAQDL--  413 (638)
T ss_pred             hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cccccchhHHHHHHHHHHhhH-HHHHHHHHH--
Confidence            555667777889999999999999999999999887652        333333333444444443322 222222211  


Q ss_pred             HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016114           89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  168 (395)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  168 (395)
                           -..+|..+.+|..+|.+|..+++++.|+++|++|+++        +|..+.+|..+|.-+....++|.|..+|+.
T Consensus       414 -----i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~  480 (638)
T KOG1126|consen  414 -----IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRK  480 (638)
T ss_pred             -----HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence                 1246777889999999999999999999999999987        677788899999999999999999999999


Q ss_pred             HHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHH
Q 016114          169 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  248 (395)
Q Consensus       169 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  248 (395)
                      |+.+..          .--.+|+.+|.+|.++++++.|+-+|++|+++        +|........+|.++.+.|+.++|
T Consensus       481 Al~~~~----------rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~A  542 (638)
T KOG1126|consen  481 ALGVDP----------RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKA  542 (638)
T ss_pred             hhcCCc----------hhhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHH
Confidence            987532          22567899999999999999999999999986        466677788899999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC
Q 016114          249 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE  328 (395)
Q Consensus       249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  328 (395)
                      +.++++|+.+        +|....+.+..|.++...+++++|+..+++..++.        |+...++..+|.+|.+.|+
T Consensus       543 L~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v--------P~es~v~~llgki~k~~~~  606 (638)
T KOG1126|consen  543 LQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYVEALQELEELKELV--------PQESSVFALLGKIYKRLGN  606 (638)
T ss_pred             HHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHHcc
Confidence            9999999873        45555677889999999999999999999887655        6667789999999999999


Q ss_pred             chhHHHHHHHHHHHH
Q 016114          329 DDTKLLELLKRVLRI  343 (395)
Q Consensus       329 ~~~~A~~~~~~al~~  343 (395)
                      .+ .|+..|.-|.++
T Consensus       607 ~~-~Al~~f~~A~~l  620 (638)
T KOG1126|consen  607 TD-LALLHFSWALDL  620 (638)
T ss_pred             ch-HHHHhhHHHhcC
Confidence            99 999999888865

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.91  E-value=2.4e-21  Score=178.33  Aligned_cols=332  Identities=13%  Similarity=0.057  Sum_probs=240.7

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   91 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   91 (395)
                      .+|..+.++..+|.++...|++++|+..++++++..     +++   ..+...++.++...|++++|+..+++++..   
T Consensus        44 ~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-----P~~---~~a~~~la~~l~~~g~~~eA~~~l~~~l~~---  112 (765)
T PRK10049         44 HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-----PQN---DDYQRGLILTLADAGQYDEALVKAKQLVSG---  112 (765)
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence            345556678899999999999999999999999862     222   445678999999999999999999999886   


Q ss_pred             hcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH--
Q 016114           92 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA--  169 (395)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--  169 (395)
                           .|.... +..+|.++...|++++|+..++++++.        .|....++..++.++...|..++|+..++++  
T Consensus       113 -----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~  178 (765)
T PRK10049        113 -----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAIDDANL  178 (765)
T ss_pred             -----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence                 455556 888999999999999999999999987        3444455666788888888877777555521  


Q ss_pred             -------------------------------------HHHHHhcc---cCCCC-chHHHHHHHHHHHHHHHcCChHHHHH
Q 016114          170 -------------------------------------LRVIKDSN---YMSLD-DSIMENMRIDLAELLHIVGRGQEGRE  208 (395)
Q Consensus       170 -------------------------------------~~~~~~~~---~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~  208 (395)
                                                           ++..+...   ...++ .+....+.......+...|++++|+.
T Consensus       179 ~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~  258 (765)
T PRK10049        179 TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS  258 (765)
T ss_pred             CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence                                                 11111110   00111 12222333332234467799999999


Q ss_pred             HHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCc-chHHHHHHHHHHHHhcCCh
Q 016114          209 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ-SISFPMLHLGITLYHLNRD  287 (395)
Q Consensus       209 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~  287 (395)
                      .|++++..     ++..|.....  .+|.+|...|++++|+..|++++..     .+..+ ........++.++...|++
T Consensus       259 ~~~~ll~~-----~~~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~-----~p~~~~~~~~~~~~L~~a~~~~g~~  326 (765)
T PRK10049        259 EYQRLKAE-----GQIIPPWAQR--WVASAYLKLHQPEKAQSILTELFYH-----PETIADLSDEELADLFYSLLESENY  326 (765)
T ss_pred             HHHHhhcc-----CCCCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhc-----CCCCCCCChHHHHHHHHHHHhcccH
Confidence            99987764     1223444333  3688999999999999999998752     11121 1234556778888999999


Q ss_pred             HHHHHHHHHHHHHHHHH---cC--CCCh--HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 016114          288 KEAEKLVLEALYIREIA---FG--KDSL--PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK  360 (395)
Q Consensus       288 ~~A~~~~~~al~~~~~~---~~--~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  360 (395)
                      ++|...++++.......   ++  ...|  ....+...++.++...|+.+ +|+..+++++..        .|....++.
T Consensus       327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~-eA~~~l~~al~~--------~P~n~~l~~  397 (765)
T PRK10049        327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP-QAEMRARELAYN--------APGNQGLRI  397 (765)
T ss_pred             HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--------CCCCHHHHH
Confidence            99999999887643100   00  0111  23456778999999999999 999999999865        344457889


Q ss_pred             HHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          361 KVVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       361 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      .+|.++...|++++|+..+++++.+.|+.
T Consensus       398 ~lA~l~~~~g~~~~A~~~l~~al~l~Pd~  426 (765)
T PRK10049        398 DYASVLQARGWPRAAENELKKAEVLEPRN  426 (765)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence            99999999999999999999999987664

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.91  E-value=2.7e-21  Score=168.36  Aligned_cols=340  Identities=18%  Similarity=0.155  Sum_probs=234.0

Q ss_pred             hcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHH
Q 016114            8 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT   87 (395)
Q Consensus         8 ~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   87 (395)
                      .+...+|...-.+...|.+.+..|+|..|+.+|.+++.+.+...       +.....+|.|+..+|+.+.|+..|+++++
T Consensus       155 ~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~-------aD~rIgig~Cf~kl~~~~~a~~a~~ralq  227 (1018)
T KOG2002|consen  155 FVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK-------ADVRIGIGHCFWKLGMSEKALLAFERALQ  227 (1018)
T ss_pred             HHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC-------CCccchhhhHHHhccchhhHHHHHHHHHh
Confidence            34455677777778888889999999999999999988754421       22344567888888888888888888877


Q ss_pred             HHHHhc-----------------------------CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114           88 ILELNR-----------------------------GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        88 ~~~~~~-----------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      +-....                             -...+..+.+++.|+.-++..|+|..+..+...++...     ..
T Consensus       228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~  302 (1018)
T KOG2002|consen  228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-----EN  302 (1018)
T ss_pred             cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hh
Confidence            511100                             01123344556666666666777777666666666542     12


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114          139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  218 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  218 (395)
                      .+..+..++.+|.+|..+|++++|..+|.+++...       ++.  ..-.+..+|..|...|+++.|..+|++.+..  
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-------~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--  371 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-------NDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--  371 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-------CCC--ccccccchhHHHHHhchHHHHHHHHHHHHHh--
Confidence            34456667777777777777777777777776531       222  2223456777777777777777777776664  


Q ss_pred             hhhCCCChhHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHH
Q 016114          219 KYKGKEHPSFVTHLLNLAASYSRSK----NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  294 (395)
Q Consensus       219 ~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  294 (395)
                            .|....++..||.+|...+    ..+.|..+..+++.        ..|....+|..++.++....-+ .++..|
T Consensus       372 ------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--------~~~~d~~a~l~laql~e~~d~~-~sL~~~  436 (1018)
T KOG2002|consen  372 ------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE--------QTPVDSEAWLELAQLLEQTDPW-ASLDAY  436 (1018)
T ss_pred             ------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh--------cccccHHHHHHHHHHHHhcChH-HHHHHH
Confidence                  3444555666777776664    34555555555544        2366677888999887665544 449999


Q ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHHHHhcch
Q 016114          295 LEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSES--EEVMLTLKKVVSYLDKLGRK  372 (395)
Q Consensus       295 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~  372 (395)
                      ..|+.+......+-.   ...++++|..++..|+++ +|...|.+|+.........+.  .......+++|.++...+++
T Consensus       437 ~~A~d~L~~~~~~ip---~E~LNNvaslhf~~g~~~-~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~  512 (1018)
T KOG2002|consen  437 GNALDILESKGKQIP---PEVLNNVASLHFRLGNIE-KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT  512 (1018)
T ss_pred             HHHHHHHHHcCCCCC---HHHHHhHHHHHHHhcChH-HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence            999998887654432   357899999999999999 999999999988553322222  12355689999999999999


Q ss_pred             hhhchhhHHHHHHHHHH
Q 016114          373 EEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       373 ~~A~~~~~~a~~~~~~~  389 (395)
                      +.|...|..++...+.+
T Consensus       513 ~~A~e~Yk~Ilkehp~Y  529 (1018)
T KOG2002|consen  513 EVAEEMYKSILKEHPGY  529 (1018)
T ss_pred             hHHHHHHHHHHHHCchh
Confidence            99999999998776654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.1e-20  Score=164.71  Aligned_cols=344  Identities=18%  Similarity=0.211  Sum_probs=235.8

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      +..+.+++.|+..|+..|+|..+..+...++...     ...+..++.++++|.+|..+|+|++|..+|.+++..     
T Consensus       267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-----  336 (1018)
T KOG2002|consen  267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-----  336 (1018)
T ss_pred             CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-----
Confidence            4444567788888888899999988888888753     234567788888999999999999999999888765     


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh------------------------------CCCChhHH
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY------------------------------GENDGRVG  143 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------~~~~~~~~  143 (395)
                        ++....-.+..+|.+|...|+++.|..+|++.+...+...                              ....|...
T Consensus       337 --~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~  414 (1018)
T KOG2002|consen  337 --DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS  414 (1018)
T ss_pred             --CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence              2222456677888888888888888888888776532110                              00123344


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114          144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  223 (395)
Q Consensus       144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  223 (395)
                      .++..++.++... +...++.+|..|+.++...  ..+-+   ..+++++|..++..|++.+|...+..|+.........
T Consensus       415 ~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~--~~~ip---~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~  488 (1018)
T KOG2002|consen  415 EAWLELAQLLEQT-DPWASLDAYGNALDILESK--GKQIP---PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK  488 (1018)
T ss_pred             HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHc--CCCCC---HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence            5677777766554 4444599999999887764  22222   3456999999999999999999999999885533322


Q ss_pred             CC--hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          224 EH--PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       224 ~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      +.  .......+|+|.++...++++.|.+.|...+.        .+|....++..+|......++..+|...+..++.+.
T Consensus       489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d  560 (1018)
T KOG2002|consen  489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID  560 (1018)
T ss_pred             cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence            22  12355688999999999999999999998887        578888888888877777888888888888877652


Q ss_pred             HHH------cC----------C------------CChHHHHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHHHHhcc
Q 016114          302 EIA------FG----------K------------DSLPVGEALDCLVSIQTRL-----GEDDTKLLELLKRVLRIQEREF  348 (395)
Q Consensus       302 ~~~------~~----------~------------~~~~~~~~~~~l~~~~~~~-----~~~~~~A~~~~~~al~~~~~~~  348 (395)
                      ...      +|          +            .....+-++..||.++...     .+.+ ++...+.+|++++.+++
T Consensus       561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e-k~kk~~~KAlq~y~kvL  639 (1018)
T KOG2002|consen  561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE-KEKKHQEKALQLYGKVL  639 (1018)
T ss_pred             cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH-HHHHHHHHHHHHHHHHH
Confidence            110      11          0            0001123455677766543     2334 67777777777776655


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHH
Q 016114          349 GSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  385 (395)
Q Consensus       349 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  385 (395)
                      . .+|.+..+-+.+|.++...|++.+|...|.++.+-
T Consensus       640 ~-~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa  675 (1018)
T KOG2002|consen  640 R-NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA  675 (1018)
T ss_pred             h-cCcchhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence            4 33444445555555555555555555555555443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.2e-20  Score=151.57  Aligned_cols=305  Identities=15%  Similarity=0.115  Sum_probs=228.8

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhh
Q 016114           22 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  101 (395)
Q Consensus        22 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  101 (395)
                      .++.++....+.++++.-++.....       .-|.....-...|.+.....++++|+..|+....-        +|...
T Consensus       232 F~~~a~~el~q~~e~~~k~e~l~~~-------gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--------DPYRl  296 (559)
T KOG1155|consen  232 FLKKAYQELHQHEEALQKKERLSSV-------GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--------DPYRL  296 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-------cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcc
Confidence            3445555555666665555544433       11222233445677888888999999888887652        44444


Q ss_pred             hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114          102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  181 (395)
Q Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  181 (395)
                      .-.-..+++++-..+-.+-.-+.+.+..+        +.-...+...+|+.|...++.++|+.+|++|+++.+       
T Consensus       297 ~dmdlySN~LYv~~~~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-------  361 (559)
T KOG1155|consen  297 DDMDLYSNVLYVKNDKSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-------  361 (559)
T ss_pred             hhHHHHhHHHHHHhhhHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-------
Confidence            44444455555444433322333333333        222334567789999999999999999999999632       


Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114          182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  261 (395)
Q Consensus       182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  261 (395)
                         ....++..+|.-|..+.+...|+..|++|+++        .|..-.+|+.||..|.-++-+.=|+-+|++|...   
T Consensus       362 ---~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~---  427 (559)
T KOG1155|consen  362 ---KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL---  427 (559)
T ss_pred             ---chhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc---
Confidence               23567788999999999999999999999997        4566789999999999999999999999999883   


Q ss_pred             hhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 016114          262 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL  341 (395)
Q Consensus       262 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al  341 (395)
                           .|.....|..||.||.+.++.++|+++|.+++...      +.  ...++..||.+|...++.+ +|..+|++.+
T Consensus       428 -----kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~------dt--e~~~l~~LakLye~l~d~~-eAa~~yek~v  493 (559)
T KOG1155|consen  428 -----KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG------DT--EGSALVRLAKLYEELKDLN-EAAQYYEKYV  493 (559)
T ss_pred             -----CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc------cc--chHHHHHHHHHHHHHHhHH-HHHHHHHHHH
Confidence                 45666788999999999999999999999998743      11  2357899999999999999 9999999999


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHH
Q 016114          342 RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  385 (395)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  385 (395)
                      +.. ...|...+.+..+...|+..+.+.+++++|..+..+++.-
T Consensus       494 ~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  494 EVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             HHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence            876 3456677888899999999999999999999877666543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.90  E-value=7.9e-21  Score=175.34  Aligned_cols=311  Identities=11%  Similarity=-0.038  Sum_probs=234.6

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCc---hhHH------------
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR---AKKA------------   78 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A------------   78 (395)
                      |.....+..++......|++++|..+++++......     ..........++.+|...+.   ..++            
T Consensus       373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~  447 (987)
T PRK09782        373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGD-----ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ  447 (987)
T ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcc-----cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence            555667788889999999999999999998874111     10112233466666666654   2333            


Q ss_pred             ----------HHHHHHHHHHHHHhcCCCChh--hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 016114           79 ----------VEIYHRVITILELNRGTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  146 (395)
Q Consensus        79 ----------~~~~~~al~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  146 (395)
                                ...+..+...    . +..|.  ...++.++|.++.. +++.+|+..+.+++...        |.. ...
T Consensus       448 ~~~~~~~~~~~~~~~~~~~a----l-~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd~-~~~  512 (987)
T PRK09782        448 RQWQSQLPGIADNCPAIVRL----L-GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PDA-WQH  512 (987)
T ss_pred             HHHHhhhhhhhhhHHHHHHh----c-ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------Cch-HHH
Confidence                      2222222222    2 23455  77899999999987 89999999999998762        222 235


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh
Q 016114          147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  226 (395)
Q Consensus       147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  226 (395)
                      ..+|.++...|++++|+..++++...       .+.++    .+..+|.++...|++++|+.++++++..        .|
T Consensus       513 L~lA~al~~~Gr~eeAi~~~rka~~~-------~p~~~----a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P  573 (987)
T PRK09782        513 RAVAYQAYQVEDYATALAAWQKISLH-------DMSNE----DLLAAANTAQAAGNGAARDRWLQQAEQR--------GL  573 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcc-------CCCcH----HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CC
Confidence            56677778999999999999987542       12222    2467899999999999999999999874        23


Q ss_pred             hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Q 016114          227 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG  306 (395)
Q Consensus       227 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  306 (395)
                      ........++......|++++|+..+++++.+        .|. ...+.++|.++...|++++|+..+++++...     
T Consensus       574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-----  639 (987)
T PRK09782        574 GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELE-----  639 (987)
T ss_pred             ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence            33344445666666779999999999999973        344 6788999999999999999999999999864     


Q ss_pred             CCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114          307 KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  386 (395)
Q Consensus       307 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  386 (395)
                         |....++.++|.++...|+++ +|+..|+++++.        +|+...++.++|.++..+|++++|+..|++++++.
T Consensus       640 ---Pd~~~a~~nLG~aL~~~G~~e-eAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        640 ---PNNSNYQAALGYALWDSGDIA-QSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             ---CCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence               444467899999999999999 999999999975        34446789999999999999999999999999887


Q ss_pred             HHH
Q 016114          387 MKY  389 (395)
Q Consensus       387 ~~~  389 (395)
                      ++.
T Consensus       708 P~~  710 (987)
T PRK09782        708 DNQ  710 (987)
T ss_pred             CCC
Confidence            654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.90  E-value=9.3e-21  Score=174.85  Aligned_cols=295  Identities=9%  Similarity=-0.036  Sum_probs=227.7

Q ss_pred             cCCCcHH--HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHH
Q 016114            9 LKDDEPL--LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI   86 (395)
Q Consensus         9 l~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   86 (395)
                      ..+..|.  .+.+++.+|.++.. +++.+|+..+.+++...     ++.    .....+|..+...|++++|+..|+++.
T Consensus       467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-----Pd~----~~~L~lA~al~~~Gr~eeAi~~~rka~  536 (987)
T PRK09782        467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-----PDA----WQHRAVAYQAYQVEDYATALAAWQKIS  536 (987)
T ss_pred             hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-----Cch----HHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            3344455  77889999999987 89999999999988753     221    135566777789999999999999864


Q ss_pred             HHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 016114           87 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY  166 (395)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  166 (395)
                      ..        .+. ...+..+|.++...|++++|..++++++..        .|........++......|++++|+..+
T Consensus       537 ~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~  599 (987)
T PRK09782        537 LH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDL  599 (987)
T ss_pred             cc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            42        111 234678899999999999999999999875        2333344555666667789999999999


Q ss_pred             HHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHH
Q 016114          167 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV  246 (395)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  246 (395)
                      +++++.       .|+    ...+.++|.++...|++++|+..+++++.+        .|....++.++|.++...|+++
T Consensus       600 ~~AL~l-------~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~aL~~~G~~e  660 (987)
T PRK09782        600 TRSLNI-------APS----ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGYALWDSGDIA  660 (987)
T ss_pred             HHHHHh-------CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHH
Confidence            999975       232    356789999999999999999999999986        4556678999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc
Q 016114          247 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL  326 (395)
Q Consensus       247 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~  326 (395)
                      +|+..+++++++        .|....++.++|.++...|++++|+..++++++..        |..+.+....|.+....
T Consensus       661 eAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--------P~~a~i~~~~g~~~~~~  724 (987)
T PRK09782        661 QSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--------DNQALITPLTPEQNQQR  724 (987)
T ss_pred             HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCchhhhhhhHHHHHH
Confidence            999999999983        56777889999999999999999999999999754        45555666777777777


Q ss_pred             CCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhh
Q 016114          327 GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEK  375 (395)
Q Consensus       327 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  375 (395)
                      .+++ .|.+.+.++..+-        +... +....|.++...+++-.+
T Consensus       725 ~~~~-~a~~~~~r~~~~~--------~~~~-a~~~~g~~~~~~~~~~~~  763 (987)
T PRK09782        725 FNFR-RLHEEVGRRWTFS--------FDSS-IGLRSGAMSTANNNVGGA  763 (987)
T ss_pred             HHHH-HHHHHHHHHhhcC--------ccch-hccccchHhhhcccccCC
Confidence            7777 7777777766531        2222 555666666666665433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=7.3e-20  Score=147.05  Aligned_cols=276  Identities=13%  Similarity=0.087  Sum_probs=220.3

Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcC
Q 016114           15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG   94 (395)
Q Consensus        15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   94 (395)
                      ...-.-...|.+...+.++++|+..|+...+.        +|....-+...+++++...+-.+---+.+.+..+      
T Consensus       260 ~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--------DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i------  325 (559)
T KOG1155|consen  260 NSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--------DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI------  325 (559)
T ss_pred             ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh------
Confidence            33334456788899999999999999987652        4444444555566666555433333333333333      


Q ss_pred             CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114           95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  174 (395)
Q Consensus        95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  174 (395)
                        +.-.+.+...+|+.|...++.++|+.+|++|+++        +|....++..+|.-|..+++...|+..|++|+++.+
T Consensus       326 --dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p  395 (559)
T KOG1155|consen  326 --DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP  395 (559)
T ss_pred             --ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence              3344567778899999999999999999999987        677888999999999999999999999999999753


Q ss_pred             hcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016114          175 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  254 (395)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  254 (395)
                      .          --++|+.||..|..++-..=|+-+|++|...        .|.....|..||.+|.+.++.++|+.+|.+
T Consensus       396 ~----------DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykr  457 (559)
T KOG1155|consen  396 R----------DYRAWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKR  457 (559)
T ss_pred             h----------hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            2          2567899999999999999999999999885        344556788999999999999999999999


Q ss_pred             HHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHH
Q 016114          255 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL  334 (395)
Q Consensus       255 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~  334 (395)
                      ++..      .  .....++..||.+|.+.++..+|..+|++.++.. ...|...+.+..+...|+.-+.+.++++ +|.
T Consensus       458 ai~~------~--dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~-~As  527 (559)
T KOG1155|consen  458 AILL------G--DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFD-EAS  527 (559)
T ss_pred             HHhc------c--ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchH-HHH
Confidence            9883      1  1245688999999999999999999999999976 3445666778888888999999999999 888


Q ss_pred             HHHHHHHH
Q 016114          335 ELLKRVLR  342 (395)
Q Consensus       335 ~~~~~al~  342 (395)
                      .+..+++.
T Consensus       528 ~Ya~~~~~  535 (559)
T KOG1155|consen  528 YYATLVLK  535 (559)
T ss_pred             HHHHHHhc
Confidence            88777764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=4.8e-19  Score=145.90  Aligned_cols=275  Identities=17%  Similarity=0.230  Sum_probs=221.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      ..++...+..++..++|.+....++..++..     +-++...  -..+| ++...|+..+-..+-.+.++        .
T Consensus       244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-----pfh~~~~--~~~ia-~l~el~~~n~Lf~lsh~LV~--------~  307 (611)
T KOG1173|consen  244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-----PFHLPCL--PLHIA-CLYELGKSNKLFLLSHKLVD--------L  307 (611)
T ss_pred             HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-----CCCcchH--HHHHH-HHHHhcccchHHHHHHHHHH--------h
Confidence            3455667888888999999888888877752     2233222  23445 77777776554444444333        3


Q ss_pred             ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114           97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  176 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  176 (395)
                      .|..+.+|+.+|..|...|++.+|..+|.++..+        ++..+.+|...|..+...|..++|+..|..|-++... 
T Consensus       308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-  378 (611)
T KOG1173|consen  308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-  378 (611)
T ss_pred             CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-
Confidence            7888899999999999999999999999999876        6777889999999999999999999999999998743 


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114          177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  256 (395)
Q Consensus       177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  256 (395)
                          ..-|.     ..+|.-|...++++-|..+|.+|+.+.        |.....++.+|.+....+.|.+|..+|+.++
T Consensus       379 ----~hlP~-----LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l  441 (611)
T KOG1173|consen  379 ----CHLPS-----LYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKAL  441 (611)
T ss_pred             ----CcchH-----HHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence                23333     458999999999999999999999874        4445678899999999999999999999999


Q ss_pred             HHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHH
Q 016114          257 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL  336 (395)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~  336 (395)
                      ...+... +..+....++.+||.++.+++.+++|+.++++++.+.        |....++..+|-+|..+|+.+ .|+++
T Consensus       442 ~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--------~k~~~~~asig~iy~llgnld-~Aid~  511 (611)
T KOG1173|consen  442 EVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--------PKDASTHASIGYIYHLLGNLD-KAIDH  511 (611)
T ss_pred             HHhhhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--------CCchhHHHHHHHHHHHhcChH-HHHHH
Confidence            6555543 3334566778999999999999999999999999865        444567889999999999999 99999


Q ss_pred             HHHHHHH
Q 016114          337 LKRVLRI  343 (395)
Q Consensus       337 ~~~al~~  343 (395)
                      |.+++.+
T Consensus       512 fhKaL~l  518 (611)
T KOG1173|consen  512 FHKALAL  518 (611)
T ss_pred             HHHHHhc
Confidence            9999975

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.85  E-value=5.2e-18  Score=147.18  Aligned_cols=315  Identities=15%  Similarity=0.104  Sum_probs=236.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      ...+...|+..+..|++++|...+.+++..        .|....++..||.+|..+|+.+++...+-.|-.+        
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--------  202 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--------  202 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--------
Confidence            445677888889999999999999999885        3566778999999999999999999888776554        


Q ss_pred             ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114           97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  176 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  176 (395)
                      .|.....|..++.....+|++.+|.-+|.+|++.        .|.........+.+|.+.|+...|...|.+++....  
T Consensus       203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--  272 (895)
T KOG2076|consen  203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--  272 (895)
T ss_pred             CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--
Confidence            3444478889999999999999999999999987        455567788899999999999999999999988642  


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114          177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  256 (395)
Q Consensus       177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  256 (395)
                         +.+...........+..+...++-+.|.+.++.++.....      ......++.++.++.....++.|........
T Consensus       273 ---~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~------~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~  343 (895)
T KOG2076|consen  273 ---PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD------EASLEDLNILAELFLKNKQSDKALMKIVDDR  343 (895)
T ss_pred             ---chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc------cccccHHHHHHHHHHHhHHHHHhhHHHHHHh
Confidence               1122223333345577778888888899888888773221      1122334456777777777777766554433


Q ss_pred             H----------------------HHH----------------------------------HhhCCCCcchHHHHHHHHHH
Q 016114          257 D----------------------IMT----------------------------------KTVGPDDQSISFPMLHLGIT  280 (395)
Q Consensus       257 ~----------------------~~~----------------------------------~~~~~~~~~~~~~~~~la~~  280 (395)
                      .                      ++.                                  ........+....+..++..
T Consensus       344 ~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~a  423 (895)
T KOG2076|consen  344 NRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADA  423 (895)
T ss_pred             ccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHH
Confidence            2                      000                                  00000012334567788999


Q ss_pred             HHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 016114          281 LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK  360 (395)
Q Consensus       281 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  360 (395)
                      +...|++.+|+.++......       .....+..|..+|.+|..+|.++ +|+++|++++..        .|+..++..
T Consensus       424 l~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e-~A~e~y~kvl~~--------~p~~~D~Ri  487 (895)
T KOG2076|consen  424 LTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYE-EAIEFYEKVLIL--------APDNLDARI  487 (895)
T ss_pred             HHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHH-HHHHHHHHHHhc--------CCCchhhhh
Confidence            99999999999998877552       22223567899999999999999 999999999974        455677889


Q ss_pred             HHHHHHHHhcchhhhchhhHHH
Q 016114          361 KVVSYLDKLGRKEEKFPLKKRL  382 (395)
Q Consensus       361 ~la~~~~~~g~~~~A~~~~~~a  382 (395)
                      .|+.++..+|++++|.+.+++.
T Consensus       488 ~Lasl~~~~g~~EkalEtL~~~  509 (895)
T KOG2076|consen  488 TLASLYQQLGNHEKALETLEQI  509 (895)
T ss_pred             hHHHHHHhcCCHHHHHHHHhcc
Confidence            9999999999999999888774

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.85  E-value=3.1e-17  Score=128.18  Aligned_cols=349  Identities=16%  Similarity=0.092  Sum_probs=271.8

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      ...-|.-++...++++|+..+.+.+.....     .......+..+..+...+|.|++++.+--..++.+....  +...
T Consensus         9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~-----~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~--ds~~   81 (518)
T KOG1941|consen    9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSD-----LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE--DSDF   81 (518)
T ss_pred             HHHHHHhHhcCchHHHHHHHHHHHHHHHHH-----HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            455677788889999999999998876543     234556677778889999999999988777666665543  4556


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND-GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  178 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  178 (395)
                      ...++.+++..+....++.+++.+-...+.+-    +... ..-......++..+..++.++++++.|+.|+++....  
T Consensus        82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--  155 (518)
T KOG1941|consen   82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--  155 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--
Confidence            67889999999999999999988887776541    1111 1123455668999999999999999999999998754  


Q ss_pred             CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC--ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114          179 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--HPSFVTHLLNLAASYSRSKNFVEAERLLRICL  256 (395)
Q Consensus       179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  256 (395)
                        .|+..-..++..||..+....++++|.-+..+|.++.....-.+  ......+++.++..+..+|+...|.++.+++.
T Consensus       156 --~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~  233 (518)
T KOG1941|consen  156 --DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAM  233 (518)
T ss_pred             --CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence              45555567778999999999999999999999999987654222  12345577889999999999999999999999


Q ss_pred             HHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCch----hH
Q 016114          257 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD----TK  332 (395)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~  332 (395)
                      ++.-..  .+.+....++..+|.+|...|+.+.|..-|++|.......  .+......++...+.++....-..    -.
T Consensus       234 klal~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Cr  309 (518)
T KOG1941|consen  234 KLALQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL--GDRMGQVEALDGAAKCLETLRLQNKICNCR  309 (518)
T ss_pred             HHHHHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            987665  5667788899999999999999999999999999988765  344555666777777776554333    04


Q ss_pred             HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          333 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       333 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      |+++-++++++..++ | ........+..++.+|...|.-++=...+.++-+..+..
T Consensus       310 ale~n~r~levA~~I-G-~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e~  364 (518)
T KOG1941|consen  310 ALEFNTRLLEVASSI-G-AKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEET  364 (518)
T ss_pred             hhHHHHHHHHHHHHh-h-hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            999999999998875 3 234567888999999999999888888888776665543

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.85  E-value=1.8e-17  Score=154.40  Aligned_cols=309  Identities=11%  Similarity=0.044  Sum_probs=175.9

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   97 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   97 (395)
                      .+|..+-..+...|+++.|..++.++.+.     +. .| ...++..+...|...|+.++|...|++....       ..
T Consensus       438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-----Gl-~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-------Gv  503 (1060)
T PLN03218        438 STFNMLMSVCASSQDIDGALRVLRLVQEA-----GL-KA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-------GV  503 (1060)
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-------CC
Confidence            34566667777888888888888776553     11 11 1234666777788888888888888776542       11


Q ss_pred             hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114           98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  177 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  177 (395)
                      .....++..+...|.+.|++++|...|.+....      .-.|+ ..+++.+...|.+.|++++|...+.++......  
T Consensus       504 ~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g--  574 (1060)
T PLN03218        504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSK------NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHP--  574 (1060)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC--
Confidence            223456777777888888888888887776542      11222 346677777777777777777777776542110  


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                       ..|+    ..++..+...|.+.|++++|.++|++..+.       +.+....+++.+...|.+.|++++|..+|.+...
T Consensus       575 -i~PD----~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        575 -IDPD----HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK  642 (1060)
T ss_pred             -CCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence             1122    234455666777777777777777665442       1112234556666666667777777666666543


Q ss_pred             HHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114          258 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  337 (395)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  337 (395)
                      .      .-.|+ ..++..+...+...|++++|.++++++.+.       .......++..+...|.+.|+.+ +|..+|
T Consensus       643 ~------Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------G~~pd~~tynsLI~ay~k~G~~e-eA~~lf  707 (1060)
T PLN03218        643 K------GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------GIKLGTVSYSSLMGACSNAKNWK-KALELY  707 (1060)
T ss_pred             c------CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHH-HHHHHH
Confidence            1      11222 334555556666666666666666554431       11111234555555555556555 555555


Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHH
Q 016114          338 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  383 (395)
Q Consensus       338 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  383 (395)
                      ++....     + ..|+ ..++..+...|.+.|++++|.++|+++.
T Consensus       708 ~eM~~~-----g-~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~  746 (1060)
T PLN03218        708 EDIKSI-----K-LRPT-VSTMNALITALCEGNQLPKALEVLSEMK  746 (1060)
T ss_pred             HHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            554321     0 1111 2345555555555555555555555443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.85  E-value=6.9e-18  Score=130.91  Aligned_cols=322  Identities=14%  Similarity=0.137  Sum_probs=245.6

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   91 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   91 (395)
                      .+|..+.-.+.+|..++..|++..|+..|..|++.        +|....+++..|.+|..+|+-.-|+.-+.+++++   
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---  101 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---  101 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---
Confidence            45666667889999999999999999999999874        4667778999999999999999999999999987   


Q ss_pred             hcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH------------HHHHHHHHHHHHCCCH
Q 016114           92 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG------------MAMCSLAHAKCANGNA  159 (395)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------------~~~~~la~~~~~~g~~  159 (395)
                           .|+...+....|.++.++|++++|+.-|.+++..-.     ......            ..+......+...|++
T Consensus       102 -----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~-----s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~  171 (504)
T KOG0624|consen  102 -----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEP-----SNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC  171 (504)
T ss_pred             -----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC-----CcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch
Confidence                 678888889999999999999999999999986421     111111            1233344556778999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHH
Q 016114          160 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY  239 (395)
Q Consensus       160 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  239 (395)
                      ..|+.+....+++.          ++-+..+...+.+|...|++..|+.-++.+-++.        .+....++.++.++
T Consensus       172 ~~ai~~i~~llEi~----------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--------~DnTe~~ykis~L~  233 (504)
T KOG0624|consen  172 QNAIEMITHLLEIQ----------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--------QDNTEGHYKISQLL  233 (504)
T ss_pred             hhHHHHHHHHHhcC----------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--------ccchHHHHHHHHHH
Confidence            99999999998863          2334556778999999999999999998876652        23456788899999


Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHH---------HHHHHhcCChHHHHHHHHHHHHHHHHHcCCC-C
Q 016114          240 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL---------GITLYHLNRDKEAEKLVLEALYIREIAFGKD-S  309 (395)
Q Consensus       240 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~  309 (395)
                      ...|+.+.++...++++.+     .++|......|-.+         +.-....++|.++++..++.++.-     |. .
T Consensus       234 Y~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e-----p~~~  303 (504)
T KOG0624|consen  234 YTVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE-----PEET  303 (504)
T ss_pred             HhhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-----Cccc
Confidence            9999999999999888873     34443332222222         223344566666666666555421     22 1


Q ss_pred             hHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          310 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       310 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      +-.......+..|+...|++. +|+....+++++        .|+.+.++..-|..|.....|++|+.-|++|.++.++.
T Consensus       304 ~ir~~~~r~~c~C~~~d~~~~-eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn  374 (504)
T KOG0624|consen  304 MIRYNGFRVLCTCYREDEQFG-EAIQQCKEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN  374 (504)
T ss_pred             ceeeeeeheeeecccccCCHH-HHHHHHHHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence            222344556778888889888 899888888864        57778999999999999999999999999999887765


Q ss_pred             Hh
Q 016114          390 KQ  391 (395)
Q Consensus       390 ~~  391 (395)
                      ..
T Consensus       375 ~~  376 (504)
T KOG0624|consen  375 TR  376 (504)
T ss_pred             HH
Confidence            43

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.85  E-value=2.2e-17  Score=153.85  Aligned_cols=311  Identities=13%  Similarity=0.069  Sum_probs=237.0

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      ..++..+...|...|++++|..+|.++.+.     +. .|+ ..++..+...|.+.|++++|...|.+....     + -
T Consensus       472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-----Gv-~Pd-vvTynaLI~gy~k~G~~eeAl~lf~~M~~~-----G-v  538 (1060)
T PLN03218        472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNA-----GV-EAN-VHTFGALIDGCARAGQVAKAFGAYGIMRSK-----N-V  538 (1060)
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-----C-C
Confidence            345778889999999999999999988653     11 122 356788899999999999999999887653     1 1


Q ss_pred             ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114           97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  176 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  176 (395)
                      .| ...++..+...|.+.|++++|.+.+.+......    .-.|+ ..++..+...|.+.|++++|.++|+++.+..   
T Consensus       539 ~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~----gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~g---  609 (1060)
T PLN03218        539 KP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETH----PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYN---  609 (1060)
T ss_pred             CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC----CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---
Confidence            23 256788999999999999999999998865311    11233 3578888899999999999999999887631   


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114          177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  256 (395)
Q Consensus       177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  256 (395)
                        ..++    ..+++.+...|.+.|++++|..+|++....     | -.|+ ..++..+...+.+.|++++|.++++++.
T Consensus       610 --i~p~----~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~  676 (1060)
T PLN03218        610 --IKGT----PEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDAR  676 (1060)
T ss_pred             --CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence              1122    345678899999999999999999987653     1 1233 4577888999999999999999999877


Q ss_pred             HHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHH
Q 016114          257 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL  336 (395)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~  336 (395)
                      +.       ..+....++..+...|.+.|++++|.++|++....      ...|+ ..++..+...|.+.|+.+ +|.++
T Consensus       677 k~-------G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~------g~~Pd-vvtyN~LI~gy~k~G~~e-eAlel  741 (1060)
T PLN03218        677 KQ-------GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI------KLRPT-VSTMNALITALCEGNQLP-KALEV  741 (1060)
T ss_pred             Hc-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHH-HHHHH
Confidence            51       22334567889999999999999999999876542      12233 356889999999999999 99999


Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHH
Q 016114          337 LKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  384 (395)
Q Consensus       337 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  384 (395)
                      |++....      .-.|+ ..++..+...+.+.|++++|..++.++.+
T Consensus       742 f~eM~~~------Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k  782 (1060)
T PLN03218        742 LSEMKRL------GLCPN-TITYSILLVASERKDDADVGLDLLSQAKE  782 (1060)
T ss_pred             HHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9987642      12233 34667777899999999999999998865

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=3.6e-18  Score=140.16  Aligned_cols=329  Identities=14%  Similarity=0.120  Sum_probs=249.4

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      +...|+..+..|+|+.|+.+|..++.+.        |.....+.+...+|...|+|++|+.--.+..++        .|.
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~--------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--------~p~   68 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLS--------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--------NPD   68 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccC--------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--------CCc
Confidence            3456888889999999999999998863        223345667777888888888888877777765        677


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH---------------------------------------------
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV---------------------------------------------  134 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------------------------------  134 (395)
                      ++..|..+|..+...|+|++|+..|.+.++.-...                                             
T Consensus        69 w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~  148 (539)
T KOG0548|consen   69 WAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAY  148 (539)
T ss_pred             hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHH
Confidence            78888888888888888888888887765431000                                             


Q ss_pred             ------------------------------h----------------CCCCh---------------h------HHHHHH
Q 016114          135 ------------------------------Y----------------GENDG---------------R------VGMAMC  147 (395)
Q Consensus       135 ------------------------------~----------------~~~~~---------------~------~~~~~~  147 (395)
                                                    .                ....|               .      .+....
T Consensus       149 ~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek  228 (539)
T KOG0548|consen  149 VKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK  228 (539)
T ss_pred             HHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence                                          0                00000               0      123356


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChh
Q 016114          148 SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS  227 (395)
Q Consensus       148 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  227 (395)
                      .+|.......+++.|+..|..++++...           ...+.+.+.+|...|.+.+.+.....+++....... +...
T Consensus       229 ~lgnaaykkk~f~~a~q~y~~a~el~~~-----------it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~kl  296 (539)
T KOG0548|consen  229 ELGNAAYKKKDFETAIQHYAKALELATD-----------ITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DYKL  296 (539)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhHhhh-----------hHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HHHH
Confidence            7788888999999999999999987521           344578899999999999999888888776443321 1122


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH--hh----------------CCCCcchHHHHHHHHHHHHhcCChHH
Q 016114          228 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK--TV----------------GPDDQSISFPMLHLGITLYHLNRDKE  289 (395)
Q Consensus       228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~----------------~~~~~~~~~~~~~la~~~~~~g~~~~  289 (395)
                      ...++..+|..|...++++.|+.+|++++.-.+.  ..                .--.|..+.-...-|..++..|+|..
T Consensus       297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~  376 (539)
T KOG0548|consen  297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE  376 (539)
T ss_pred             HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence            4556666888999999999999999998764322  00                01123444445566899999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 016114          290 AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL  369 (395)
Q Consensus       290 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  369 (395)
                      |+..|.+++...        |+.+..+.+.|-+|.++|.+. .|+...++++++        +|.....+..-|.++..+
T Consensus       377 Av~~YteAIkr~--------P~Da~lYsNRAac~~kL~~~~-~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~m  439 (539)
T KOG0548|consen  377 AVKHYTEAIKRD--------PEDARLYSNRAACYLKLGEYP-EALKDAKKCIEL--------DPNFIKAYLRKGAALRAM  439 (539)
T ss_pred             HHHHHHHHHhcC--------CchhHHHHHHHHHHHHHhhHH-HHHHHHHHHHhc--------CchHHHHHHHHHHHHHHH
Confidence            999999988732        677788999999999999999 999999999875        688889999999999999


Q ss_pred             cchhhhchhhHHHHHHHHHHHhhh
Q 016114          370 GRKEEKFPLKKRLSNLRMKYKQKV  393 (395)
Q Consensus       370 g~~~~A~~~~~~a~~~~~~~~~~~  393 (395)
                      .+|++|.+.|+++++..++..+.+
T Consensus       440 k~ydkAleay~eale~dp~~~e~~  463 (539)
T KOG0548|consen  440 KEYDKALEAYQEALELDPSNAEAI  463 (539)
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHH
Confidence            999999999999999988776654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.3e-18  Score=143.37  Aligned_cols=277  Identities=16%  Similarity=0.141  Sum_probs=216.4

Q ss_pred             HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114           61 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  140 (395)
Q Consensus        61 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  140 (395)
                      .+...+..++..++|.+..+.....++.       +++.....-..+| ++...|+..   .+|.-+.++.+     ..|
T Consensus       246 ll~~~ad~~y~~c~f~~c~kit~~lle~-------dpfh~~~~~~~ia-~l~el~~~n---~Lf~lsh~LV~-----~yP  309 (611)
T KOG1173|consen  246 LLAEKADRLYYGCRFKECLKITEELLEK-------DPFHLPCLPLHIA-CLYELGKSN---KLFLLSHKLVD-----LYP  309 (611)
T ss_pred             HHHHHHHHHHHcChHHHHHHHhHHHHhh-------CCCCcchHHHHHH-HHHHhcccc---hHHHHHHHHHH-----hCC
Confidence            3444556666777777777777776665       3333333445566 677777654   44444444432     367


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q 016114          141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  220 (395)
Q Consensus       141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  220 (395)
                      ..+..|+.+|..|...|++.+|.++|.++..+-          +..+.+|...|..+...|..++|+..|..|-++....
T Consensus       310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD----------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~  379 (611)
T KOG1173|consen  310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLD----------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC  379 (611)
T ss_pred             CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC----------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence            777889999999999999999999999997752          3345677889999999999999999999998876432


Q ss_pred             hCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114          221 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  300 (395)
Q Consensus       221 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  300 (395)
                      .        .....+|.-|...+++.-|..+|.+|+.+.        |.....+..+|.+.+..+.+.+|..+|+.++..
T Consensus       380 h--------lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~  443 (611)
T KOG1173|consen  380 H--------LPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV  443 (611)
T ss_pred             c--------chHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH
Confidence            1        234568888999999999999999999863        444556789999999999999999999999976


Q ss_pred             HHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhH
Q 016114          301 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKK  380 (395)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  380 (395)
                      .+... +..+.....+.+||.++.+++.++ +|+.+|++++.+        .|..+.++..+|-+|..+|+++.|+++|.
T Consensus       444 ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~-eAI~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~fh  513 (611)
T KOG1173|consen  444 IKSVL-NEKIFWEPTLNNLGHAYRKLNKYE-EAIDYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAIDHFH  513 (611)
T ss_pred             hhhcc-ccccchhHHHHhHHHHHHHHhhHH-HHHHHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence            66654 333455667899999999999999 999999999975        34457788999999999999999999999


Q ss_pred             HHHHHHHHH
Q 016114          381 RLSNLRMKY  389 (395)
Q Consensus       381 ~a~~~~~~~  389 (395)
                      +++.+.+..
T Consensus       514 KaL~l~p~n  522 (611)
T KOG1173|consen  514 KALALKPDN  522 (611)
T ss_pred             HHHhcCCcc
Confidence            999887653

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.84  E-value=5.7e-19  Score=142.09  Aligned_cols=319  Identities=14%  Similarity=0.151  Sum_probs=202.8

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH--------
Q 016114           19 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE--------   90 (395)
Q Consensus        19 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------   90 (395)
                      .-.++|++++...+|.+|+.+|+-+++..+.+   +....+..+.++|..+.+.|.|+.|+..|..+.+...        
T Consensus       239 lkmnigni~~kkr~fskaikfyrmaldqvpsi---nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl  315 (840)
T KOG2003|consen  239 LKMNIGNIHFKKREFSKAIKFYRMALDQVPSI---NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNL  315 (840)
T ss_pred             eeeeecceeeehhhHHHHHHHHHHHHhhcccc---chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhh
Confidence            34578999999999999999999998865443   3446677888889888899999998888877654210        


Q ss_pred             ------------------Hh---c----------CCCChh----------------------------------------
Q 016114           91 ------------------LN---R----------GTESAD----------------------------------------   99 (395)
Q Consensus        91 ------------------~~---~----------~~~~~~----------------------------------------   99 (395)
                                        +.   .          ..++|+                                        
T Consensus       316 ~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~  395 (840)
T KOG2003|consen  316 IICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIA  395 (840)
T ss_pred             hhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccc
Confidence                              00   0          001110                                        


Q ss_pred             ----------------------hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH--------------Hh-CCC----
Q 016114          100 ----------------------LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK--------------VY-GEN----  138 (395)
Q Consensus       100 ----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------~~-~~~----  138 (395)
                                            ....-.+-+..+.+.|+++.|++.+.-.-..-.+              .. |.+    
T Consensus       396 ~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~a  475 (840)
T KOG2003|consen  396 PDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADA  475 (840)
T ss_pred             cchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHH
Confidence                                  0011123345678889999998876432111000              00 000    


Q ss_pred             ----------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHH
Q 016114          139 ----------DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE  208 (395)
Q Consensus       139 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  208 (395)
                                +...+.++.+-|.+-+..|++++|.+.|++++.          ++.....+++++|..+..+|+.++|++
T Consensus       476 qqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~----------ndasc~ealfniglt~e~~~~ldeald  545 (840)
T KOG2003|consen  476 QQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN----------NDASCTEALFNIGLTAEALGNLDEALD  545 (840)
T ss_pred             HHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc----------CchHHHHHHHHhcccHHHhcCHHHHHH
Confidence                      111122344445555667777777777777765          223335566778888888888888888


Q ss_pred             HHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChH
Q 016114          209 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK  288 (395)
Q Consensus       209 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  288 (395)
                      +|-+.-.+..        ..+.++..++.+|....+..+|++++.++..+        -|....++..||.+|-+.|+-.
T Consensus       546 ~f~klh~il~--------nn~evl~qianiye~led~aqaie~~~q~~sl--------ip~dp~ilskl~dlydqegdks  609 (840)
T KOG2003|consen  546 CFLKLHAILL--------NNAEVLVQIANIYELLEDPAQAIELLMQANSL--------IPNDPAILSKLADLYDQEGDKS  609 (840)
T ss_pred             HHHHHHHHHH--------hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--------CCCCHHHHHHHHHHhhcccchh
Confidence            8777665542        23456777788888888888888877776552        2333445667777777777777


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 016114          289 EAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK  368 (395)
Q Consensus       289 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  368 (395)
                      +|..++-.....+        |...++..+|+..|....-.+ +|+.+|+++.-+        .|........++.|+.+
T Consensus       610 qafq~~ydsyryf--------p~nie~iewl~ayyidtqf~e-kai~y~ekaali--------qp~~~kwqlmiasc~rr  672 (840)
T KOG2003|consen  610 QAFQCHYDSYRYF--------PCNIETIEWLAAYYIDTQFSE-KAINYFEKAALI--------QPNQSKWQLMIASCFRR  672 (840)
T ss_pred             hhhhhhhhccccc--------CcchHHHHHHHHHHHhhHHHH-HHHHHHHHHHhc--------CccHHHHHHHHHHHHHh
Confidence            7777665554433        333445556676666665555 777777777533        34445556677888888


Q ss_pred             hcchhhhchhhHHHH
Q 016114          369 LGRKEEKFPLKKRLS  383 (395)
Q Consensus       369 ~g~~~~A~~~~~~a~  383 (395)
                      .|+|.+|..+|+..-
T Consensus       673 sgnyqka~d~yk~~h  687 (840)
T KOG2003|consen  673 SGNYQKAFDLYKDIH  687 (840)
T ss_pred             cccHHHHHHHHHHHH
Confidence            888888888877654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.83  E-value=4.6e-20  Score=150.52  Aligned_cols=265  Identities=23%  Similarity=0.235  Sum_probs=108.5

Q ss_pred             HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114           64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  143 (395)
Q Consensus        64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  143 (395)
                      .+|.++...|++++|++.+.+.+...      .+|.....+..+|.+....++++.|+..|++.+..-        +...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~~   78 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KANP   78 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc--------cccc
Confidence            56999999999999999997655431      134455777788999999999999999999998752        2233


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114          144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  223 (395)
Q Consensus       144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  223 (395)
                      ..+..++.+ ...+++++|..+++++.+..       +++    ..+.....++...++++++...++++....      
T Consensus        79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-------~~~----~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------  140 (280)
T PF13429_consen   79 QDYERLIQL-LQDGDPEEALKLAEKAYERD-------GDP----RYLLSALQLYYRLGDYDEAEELLEKLEELP------  140 (280)
T ss_dssp             ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T------
T ss_pred             ccccccccc-cccccccccccccccccccc-------ccc----chhhHHHHHHHHHhHHHHHHHHHHHHHhcc------
Confidence            445666666 68999999999998877632       121    223446677889999999999999876421      


Q ss_pred             CChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 016114          224 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  303 (395)
Q Consensus       224 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  303 (395)
                      ..+.....+..+|.++...|++++|+..++++++.        .|....+...++.++...|+.+++.+.+.......  
T Consensus       141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--  210 (280)
T PF13429_consen  141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--  210 (280)
T ss_dssp             ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--
Confidence            23445677889999999999999999999999984        45566677889999999999999888877766543  


Q ss_pred             HcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHH
Q 016114          304 AFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  383 (395)
Q Consensus       304 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  383 (395)
                         +.+|.   .+..+|.++...|+++ +|+.+|++++..        +|..+.++..+|.++...|+.++|..++++++
T Consensus       211 ---~~~~~---~~~~la~~~~~lg~~~-~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  211 ---PDDPD---LWDALAAAYLQLGRYE-EALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             ---HTSCC---HCHHHHHHHHHHT-HH-HHHHHHHHHHHH--------STT-HHHHHHHHHHHT----------------
T ss_pred             ---cCHHH---HHHHHHHHhccccccc-cccccccccccc--------cccccccccccccccccccccccccccccccc
Confidence               23333   4668899999999999 999999998864        34456778899999999999999999999987


Q ss_pred             HH
Q 016114          384 NL  385 (395)
Q Consensus       384 ~~  385 (395)
                      ..
T Consensus       276 ~~  277 (280)
T PF13429_consen  276 RL  277 (280)
T ss_dssp             --
T ss_pred             cc
Confidence            64

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.83  E-value=1.8e-16  Score=151.14  Aligned_cols=352  Identities=15%  Similarity=0.047  Sum_probs=255.7

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCc-ChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCCh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA   98 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   98 (395)
                      ....+.++...|++++|..++.++.......... +..........++.++...|++++|...+++++....   ..+..
T Consensus       412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~  488 (903)
T PRK04841        412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYY  488 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHH
Confidence            3456777888999999999999887664332101 1122445556678899999999999999999987521   11222


Q ss_pred             hhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016114           99 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  178 (395)
Q Consensus        99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  178 (395)
                      ....+...+|.++...|++++|...+.+++...+.. + .......++.++|.++...|++++|...+++++.+....  
T Consensus       489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~--  564 (903)
T PRK04841        489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-D-VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ--  564 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-c-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--
Confidence            244567789999999999999999999999987764 2 223345577899999999999999999999999988764  


Q ss_pred             CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114          179 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  258 (395)
Q Consensus       179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  258 (395)
                      ..+..+....++..+|.++...|++++|...+.+++.+.....   ......++..++.++...|++++|...+.++..+
T Consensus       565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~  641 (903)
T PRK04841        565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENL  641 (903)
T ss_pred             ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            1222233344456789999999999999999999998876432   2234566778999999999999999999999886


Q ss_pred             HHHhhCCCCcch-HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114          259 MTKTVGPDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  337 (395)
Q Consensus       259 ~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  337 (395)
                      ....  ...... ..........+...|+.+.|..++.......   . ............++.++...|+++ +|...+
T Consensus       642 ~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~-~~~~~~~~~~~~~a~~~~~~g~~~-~A~~~l  714 (903)
T PRK04841        642 LGNG--RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---F-ANNHFLQGQWRNIARAQILLGQFD-EAEIIL  714 (903)
T ss_pred             Hhcc--cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---C-ccchhHHHHHHHHHHHHHHcCCHH-HHHHHH
Confidence            5442  111111 1111112244556889999988876644311   0 111112233567899999999999 999999


Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          338 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       338 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                      ++++...+..  ........++..+|.++...|+.++|...+.+++++....+
T Consensus       715 ~~al~~~~~~--g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g  765 (903)
T PRK04841        715 EELNENARSL--RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG  765 (903)
T ss_pred             HHHHHHHHHh--CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence            9999986553  23356678889999999999999999999999998876543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.83  E-value=6.8e-17  Score=124.37  Aligned_cols=304  Identities=16%  Similarity=0.147  Sum_probs=223.7

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhh
Q 016114           22 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  101 (395)
Q Consensus        22 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  101 (395)
                      ..|.-+.-..+.++|++.|...++.        +|...++...||..+...|..+.|+.+.+..+..    .+-......
T Consensus        40 v~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----pdlT~~qr~  107 (389)
T COG2956          40 VKGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----PDLTFEQRL  107 (389)
T ss_pred             HhHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCCchHHHH
Confidence            4455566678899999999888763        5678899999999999999999999988766542    111223445


Q ss_pred             hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114          102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  181 (395)
Q Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  181 (395)
                      .+...||.-|+..|-++.|+..|....+.        ......++..|..+|....+|++|++..++..++.     ..+
T Consensus       108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-----~q~  174 (389)
T COG2956         108 LALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG-----GQT  174 (389)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-----Ccc
Confidence            68889999999999999999999987753        22234578889999999999999999999887764     234


Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114          182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  261 (395)
Q Consensus       182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  261 (395)
                      ....++..+..+|..+....+.+.|...+.+|++.        +|..+.+-..+|.++...|+++.|++.++.+++    
T Consensus       175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e----  242 (389)
T COG2956         175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLE----  242 (389)
T ss_pred             chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHH----
Confidence            56778888999999999999999999999999884        566667778899999999999999999999887    


Q ss_pred             hhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 016114          262 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL  341 (395)
Q Consensus       262 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al  341 (395)
                         .++.....+...|..+|..+|+.++....+.++.+...      .+.   ....++..-....-.+ .|..++.+-+
T Consensus       243 ---Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~------g~~---~~l~l~~lie~~~G~~-~Aq~~l~~Ql  309 (389)
T COG2956         243 ---QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT------GAD---AELMLADLIELQEGID-AAQAYLTRQL  309 (389)
T ss_pred             ---hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC------Ccc---HHHHHHHHHHHhhChH-HHHHHHHHHH
Confidence               35556677888999999999999999999998877541      122   1233444444433344 6666655554


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHH--hcchhhhchhhHHHH
Q 016114          342 RIQEREFGSESEEVMLTLKKVVSYLDK--LGRKEEKFPLKKRLS  383 (395)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~  383 (395)
                      .        .+|.....+..+..-...  -|+..+....++..+
T Consensus       310 ~--------r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv  345 (389)
T COG2956         310 R--------RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV  345 (389)
T ss_pred             h--------hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence            3        345544433333222221  233455555555543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.83  E-value=7.9e-20  Score=149.14  Aligned_cols=266  Identities=20%  Similarity=0.186  Sum_probs=106.7

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh
Q 016114           21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  100 (395)
Q Consensus        21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  100 (395)
                      ..+|.+++..|++++|+..+.+.+...      .+|.....+..+|.+....+++++|+..|++.+..        ++..
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~   77 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKAN   77 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccc--------cccc
Confidence            367999999999999999997665432      12344466777899999999999999999998875        2234


Q ss_pred             hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016114          101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  180 (395)
Q Consensus       101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  180 (395)
                      ...+..++.+ ...+++++|..+++++.+..      .++   ..+.....++...++++++...++++....       
T Consensus        78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-------  140 (280)
T PF13429_consen   78 PQDYERLIQL-LQDGDPEEALKLAEKAYERD------GDP---RYLLSALQLYYRLGDYDEAEELLEKLEELP-------  140 (280)
T ss_dssp             --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------
T ss_pred             cccccccccc-cccccccccccccccccccc------ccc---chhhHHHHHHHHHhHHHHHHHHHHHHHhcc-------
Confidence            4456666766 68999999999998876542      122   334556678899999999999999977421       


Q ss_pred             CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 016114          181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT  260 (395)
Q Consensus       181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  260 (395)
                       ..+.-...+..+|.++...|++++|+..++++++.        .|....+...++.++...|+.+++.+.+....... 
T Consensus       141 -~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-  210 (280)
T PF13429_consen  141 -AAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-  210 (280)
T ss_dssp             ----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--
T ss_pred             -CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-
Confidence             11122445678999999999999999999999986        35555677789999999999999888877766532 


Q ss_pred             HhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 016114          261 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV  340 (395)
Q Consensus       261 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a  340 (395)
                          +.+|.   .+..+|.++...|++++|+.++++++...        |....++..+|.++...|+.+ +|..+++++
T Consensus       211 ----~~~~~---~~~~la~~~~~lg~~~~Al~~~~~~~~~~--------p~d~~~~~~~a~~l~~~g~~~-~A~~~~~~~  274 (280)
T PF13429_consen  211 ----PDDPD---LWDALAAAYLQLGRYEEALEYLEKALKLN--------PDDPLWLLAYADALEQAGRKD-EALRLRRQA  274 (280)
T ss_dssp             ----HTSCC---HCHHHHHHHHHHT-HHHHHHHHHHHHHHS--------TT-HHHHHHHHHHHT----------------
T ss_pred             ----cCHHH---HHHHHHHHhcccccccccccccccccccc--------ccccccccccccccccccccc-ccccccccc
Confidence                23333   45678999999999999999999988743        334456789999999999999 999999988


Q ss_pred             HHH
Q 016114          341 LRI  343 (395)
Q Consensus       341 l~~  343 (395)
                      +..
T Consensus       275 ~~~  277 (280)
T PF13429_consen  275 LRL  277 (280)
T ss_dssp             ---
T ss_pred             ccc
Confidence            754

>PRK12370 invasion protein regulator; Provisional

Probab=99.83  E-value=2.8e-17  Score=146.17  Aligned_cols=252  Identities=12%  Similarity=-0.001  Sum_probs=190.9

Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh---------CchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           29 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------GRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        29 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      ..+++++|+.+|++++++        +|....++..+|.++...         +++++|...+++++++        +|.
T Consensus       273 ~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~  336 (553)
T PRK12370        273 TPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHN  336 (553)
T ss_pred             CHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCC
Confidence            345678999999999876        244456677778776543         3478999999999886        567


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  179 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  179 (395)
                      ...++..+|.++...|++++|+..|++++++        +|....++..+|.++...|++++|+..+++++++       
T Consensus       337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-------  401 (553)
T PRK12370        337 NPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTINECLKL-------  401 (553)
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence            7788999999999999999999999999987        4555678899999999999999999999999985       


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114          180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  259 (395)
Q Consensus       180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  259 (395)
                      .|.++..   ...++.++...|++++|+..+++++..       ..|.....+..+|.++...|++++|...+.+...  
T Consensus       402 ~P~~~~~---~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--  469 (553)
T PRK12370        402 DPTRAAA---GITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--  469 (553)
T ss_pred             CCCChhh---HHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--
Confidence            3343322   234555677789999999999998764       2344455778899999999999999999987654  


Q ss_pred             HHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114          260 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR  339 (395)
Q Consensus       260 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  339 (395)
                            ..|........++..|...|+  +|...+++.++.....  +.++      ..+..++.-.|+.+ .+... ++
T Consensus       470 ------~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g~~~-~~~~~-~~  531 (553)
T PRK12370        470 ------QEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRI--DNNP------GLLPLVLVAHGEAI-AEKMW-NK  531 (553)
T ss_pred             ------ccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHhhhH-HHHHH-HH
Confidence                  345556677788888888884  8888888876655432  2222      23666777778776 55444 44


Q ss_pred             HH
Q 016114          340 VL  341 (395)
Q Consensus       340 al  341 (395)
                      +.
T Consensus       532 ~~  533 (553)
T PRK12370        532 FK  533 (553)
T ss_pred             hh
Confidence            43

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=1.6e-18  Score=133.44  Aligned_cols=286  Identities=14%  Similarity=0.103  Sum_probs=225.7

Q ss_pred             hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh--hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114           55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL--VLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  132 (395)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  132 (395)
                      .|....+++.  .+++...+...|-......+++-.......+...  ...-..+|.||...|-+.+|.+.++.++... 
T Consensus       177 ~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~-  253 (478)
T KOG1129|consen  177 RPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF-  253 (478)
T ss_pred             ChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-
Confidence            3455555554  3566777888887777766665433222222222  2344579999999999999999999998752 


Q ss_pred             HHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114          133 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  212 (395)
Q Consensus       133 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  212 (395)
                           .++   .++..|+.+|.+..++..|+..+.+.++..       |.+   ...+..+++++..++++++|.++|+.
T Consensus       254 -----~~~---dTfllLskvY~ridQP~~AL~~~~~gld~f-------P~~---VT~l~g~ARi~eam~~~~~a~~lYk~  315 (478)
T KOG1129|consen  254 -----PHP---DTFLLLSKVYQRIDQPERALLVIGEGLDSF-------PFD---VTYLLGQARIHEAMEQQEDALQLYKL  315 (478)
T ss_pred             -----Cch---hHHHHHHHHHHHhccHHHHHHHHhhhhhcC-------Cch---hhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence                 233   567789999999999999999999998753       121   33457789999999999999999999


Q ss_pred             HHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHH
Q 016114          213 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  292 (395)
Q Consensus       213 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  292 (395)
                      +++.        ++..+.+...+|.-|.-.++++-|..+|++.+.+     |..+   ...+.++|.|+...++++-++.
T Consensus       316 vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~s---peLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  316 VLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQS---PELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----cCCC---hHHHhhHHHHHHhhcchhhhHH
Confidence            9874        4555666677888899999999999999999984     3333   4567899999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcch
Q 016114          293 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRK  372 (395)
Q Consensus       293 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  372 (395)
                      .|++++....     .....+.+|++||.+....|++. -|...|+-++.        .+++..+++.+||.+-.+.|+.
T Consensus       380 sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~n-lA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i  445 (478)
T KOG1129|consen  380 SFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFN-LAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDI  445 (478)
T ss_pred             HHHHHHhhcc-----CcchhhhhhhccceeEEeccchH-HHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCch
Confidence            9999998763     33456788999999999999999 99999998884        4567789999999999999999


Q ss_pred             hhhchhhHHHHHHHHHHHh
Q 016114          373 EEKFPLKKRLSNLRMKYKQ  391 (395)
Q Consensus       373 ~~A~~~~~~a~~~~~~~~~  391 (395)
                      ++|..++..+-...+.+-+
T Consensus       446 ~~Arsll~~A~s~~P~m~E  464 (478)
T KOG1129|consen  446 LGARSLLNAAKSVMPDMAE  464 (478)
T ss_pred             HHHHHHHHHhhhhCccccc
Confidence            9999999999877766543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=3.9e-17  Score=131.70  Aligned_cols=285  Identities=16%  Similarity=0.132  Sum_probs=223.5

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC--chhHHHHHHHHHHHHHHHhcCCCCh
Q 016114           21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG--RAKKAVEIYHRVITILELNRGTESA   98 (395)
Q Consensus        21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~   98 (395)
                      .+.+-.++..|+++.|++.+.-    +.+   .++.....+-.++...++.+|  ++.+|..+...++.+        +.
T Consensus       423 i~ka~~~lk~~d~~~aieilkv----~~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--------dr  487 (840)
T KOG2003|consen  423 INKAGELLKNGDIEGAIEILKV----FEK---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--------DR  487 (840)
T ss_pred             hhHHHHHHhccCHHHHHHHHHH----HHh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--------cc
Confidence            4556678889999999877642    222   233334445566776666654  788898888888876        34


Q ss_pred             hhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016114           99 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  178 (395)
Q Consensus        99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  178 (395)
                      ..+.++.+-|.+-+..|++++|.+.|.+++.        ++.....+++++|..+..+|+.++|+.+|-+.-.++...  
T Consensus       488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn--  557 (840)
T KOG2003|consen  488 YNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN--  557 (840)
T ss_pred             cCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh--
Confidence            5567788899999999999999999999985        456677899999999999999999999999988887643  


Q ss_pred             CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114          179 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  258 (395)
Q Consensus       179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  258 (395)
                              +.++..++.+|....+..+|++++.++..+.        |....++..||.+|-+.|+-.+|.+++-.... 
T Consensus       558 --------~evl~qianiye~led~aqaie~~~q~~sli--------p~dp~ilskl~dlydqegdksqafq~~ydsyr-  620 (840)
T KOG2003|consen  558 --------AEVLVQIANIYELLEDPAQAIELLMQANSLI--------PNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-  620 (840)
T ss_pred             --------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccC--------CCCHHHHHHHHHHhhcccchhhhhhhhhhccc-
Confidence                    5677899999999999999999999887652        33445678899999999999999998876655 


Q ss_pred             HHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHH
Q 016114          259 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK  338 (395)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  338 (395)
                             ..|....+...||..|....-+++|+.+|+++--+.        |.....-..++.|+.+.|++. +|.+.|+
T Consensus       621 -------yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq--------p~~~kwqlmiasc~rrsgnyq-ka~d~yk  684 (840)
T KOG2003|consen  621 -------YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ--------PNQSKWQLMIASCFRRSGNYQ-KAFDLYK  684 (840)
T ss_pred             -------ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC--------ccHHHHHHHHHHHHHhcccHH-HHHHHHH
Confidence                   345666777889999999999999999999986543        555556677899999999999 9999888


Q ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc
Q 016114          339 RVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR  371 (395)
Q Consensus       339 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  371 (395)
                      ..-.-        .|...+.+.-|.++.-..|-
T Consensus       685 ~~hrk--------fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  685 DIHRK--------FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHh--------CccchHHHHHHHHHhccccc
Confidence            76543        35556666667777666654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=1.8e-19  Score=138.67  Aligned_cols=234  Identities=15%  Similarity=0.107  Sum_probs=201.9

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      -..+|.||+..|.+.+|...++.++...      .+   .+++..++.+|....+...|+..+.+.++.        .|.
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q~------~~---~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~  288 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQF------PH---PDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPF  288 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhcC------Cc---hhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCc
Confidence            3689999999999999999999998743      22   345677899999999999999999998875        566


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  179 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  179 (395)
                      ....+..++.++..++++++|.++|+.+++.        ++...++...+|..|+-.++++-|+.+|++.+.+.      
T Consensus       289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG------  354 (478)
T KOG1129|consen  289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG------  354 (478)
T ss_pred             hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc------
Confidence            7778889999999999999999999999976        55556677788999999999999999999999863      


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114          180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  259 (395)
Q Consensus       180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  259 (395)
                       ..++.   .+.|+|.+...-++++-++..|++|+....     .....+.+|+|+|.+....|++.-|..+|+-++.  
T Consensus       355 -~~spe---Lf~NigLCC~yaqQ~D~~L~sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--  423 (478)
T KOG1129|consen  355 -AQSPE---LFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--  423 (478)
T ss_pred             -CCChH---HHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--
Confidence             33333   458999999999999999999999998753     2345678999999999999999999999998886  


Q ss_pred             HHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          260 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       260 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                            .++....++.+||.+-.+.|+.++|..++..+-...
T Consensus       424 ------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  424 ------SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             ------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence                  567888999999999999999999999998886654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=3.3e-18  Score=138.58  Aligned_cols=246  Identities=12%  Similarity=0.098  Sum_probs=202.5

Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcC
Q 016114           15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG   94 (395)
Q Consensus        15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   94 (395)
                      ..+.++...|..++-.|++-.|...|+.++.+.+        .....+..+|.+|....+..+....|.+|.++      
T Consensus       324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~--------~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l------  389 (606)
T KOG0547|consen  324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP--------AFNSLYIKRAAAYADENQSEKMWKDFNKAEDL------  389 (606)
T ss_pred             HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc--------ccchHHHHHHHHHhhhhccHHHHHHHHHHHhc------
Confidence            3577888999999999999999999999998743        22334888999999999999999999999987      


Q ss_pred             CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114           95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  174 (395)
Q Consensus        95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  174 (395)
                        +|..+.+|+..|.+++-++++++|..-|++++.+        +|..+..+..++...+++++++++...|+.+...+.
T Consensus       390 --dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP  459 (606)
T KOG0547|consen  390 --DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP  459 (606)
T ss_pred             --CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence              6777889999999999999999999999999987        677788899999999999999999999999988643


Q ss_pred             hcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHH-HHhhhcHHHHHHHHH
Q 016114          175 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS-YSRSKNFVEAERLLR  253 (395)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~~~~~~A~~~~~  253 (395)
                      .          ...+++..|.++..++++++|++.|..++++-....+. +. .+..+.+.|.+ ..-.+++..|+.+++
T Consensus       460 ~----------~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~-~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~  527 (606)
T KOG0547|consen  460 N----------CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI-IV-NAAPLVHKALLVLQWKEDINQAENLLR  527 (606)
T ss_pred             C----------CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc-cc-cchhhhhhhHhhhchhhhHHHHHHHHH
Confidence            2          24566778999999999999999999999985432110 00 11122222222 223489999999999


Q ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 016114          254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  304 (395)
Q Consensus       254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  304 (395)
                      +|+++        +|..-.++..||.+..++|+.++|+++|+++..+.+..
T Consensus       528 KA~e~--------Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~  570 (606)
T KOG0547|consen  528 KAIEL--------DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE  570 (606)
T ss_pred             HHHcc--------CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence            99983        67777889999999999999999999999998877543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.82  E-value=2.2e-17  Score=121.21  Aligned_cols=206  Identities=17%  Similarity=0.157  Sum_probs=174.4

Q ss_pred             hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114           55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  134 (395)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  134 (395)
                      ......+...+|.-|...|++..|...++++++.        +|....++..++.+|...|+.+.|.+.|++|+.+    
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----   98 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----   98 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----
Confidence            3456778889999999999999999999999997        7888899999999999999999999999999987    


Q ss_pred             hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 016114          135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  214 (395)
Q Consensus       135 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  214 (395)
                          +|....+++|.|..++.+|++++|...|++|+.        .|.-+....++.|+|.|..+.|+++.|..+|++++
T Consensus        99 ----~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~--------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL  166 (250)
T COG3063          99 ----APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA--------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL  166 (250)
T ss_pred             ----CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh--------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH
Confidence                677788999999999999999999999999987        35556667788999999999999999999999999


Q ss_pred             HHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHH
Q 016114          215 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  294 (395)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  294 (395)
                      ++        +|........++..+...|++..|..+++....        ..+..+..+.....+-...|+-+.+-++-
T Consensus       167 ~~--------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~--------~~~~~A~sL~L~iriak~~gd~~~a~~Y~  230 (250)
T COG3063         167 EL--------DPQFPPALLELARLHYKAGDYAPARLYLERYQQ--------RGGAQAESLLLGIRIAKRLGDRAAAQRYQ  230 (250)
T ss_pred             Hh--------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHh--------cccccHHHHHHHHHHHHHhccHHHHHHHH
Confidence            86        344455677899999999999999999887654        22345566666667777889988887776


Q ss_pred             HHHHHH
Q 016114          295 LEALYI  300 (395)
Q Consensus       295 ~~al~~  300 (395)
                      .+....
T Consensus       231 ~qL~r~  236 (250)
T COG3063         231 AQLQRL  236 (250)
T ss_pred             HHHHHh
Confidence            555443

>TIGR00540 hemY_coli hemY protein

Probab=99.82  E-value=1.4e-16  Score=136.56  Aligned_cols=319  Identities=15%  Similarity=0.117  Sum_probs=216.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      +.....-|......|+++.|...+.++.+..        |.....+...|.+....|+++.|..++.++.+.        
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~--------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--------  147 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHA--------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--------  147 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence            3334566778888999999999998876541        222334556789999999999999999998754        


Q ss_pred             Chhh-hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114           97 SADL-VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus        97 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      .|.. ..+....+.++...|++++|...+++..+.        .|....++..++.++...|++++|.+.+.+..+..  
T Consensus       148 ~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--  217 (409)
T TIGR00540       148 AGNDNILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--  217 (409)
T ss_pred             CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--
Confidence            1222 123444589999999999999999988876        34444678889999999999999999998887741  


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114          176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  255 (395)
Q Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  255 (395)
                          ..++............-....+..+++.+.+..+......    ..+........++..+...|++++|.+.++++
T Consensus       218 ----~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~----~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~  289 (409)
T TIGR00540       218 ----LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPR----HRRHNIALKIALAEHLIDCDDHDSAQEIIFDG  289 (409)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCH----HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence                1222222222122222223334444445555555443211    11234567788999999999999999999999


Q ss_pred             HHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHH
Q 016114          256 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE  335 (395)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~  335 (395)
                      ++..     ++++..... ..........++.+.+.+.++++++..     |++|. ...+..+|.++.+.|+++ +|.+
T Consensus       290 l~~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~-----p~~~~-~~ll~sLg~l~~~~~~~~-~A~~  356 (409)
T TIGR00540       290 LKKL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNV-----DDKPK-CCINRALGQLLMKHGEFI-EAAD  356 (409)
T ss_pred             HhhC-----CCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhC-----CCChh-HHHHHHHHHHHHHcccHH-HHHH
Confidence            8831     222211101 112223344578888888888887643     45553 356789999999999999 9999


Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          336 LLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       336 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      +|+++.....      +|+... +..+|.++.+.|+.++|..++++++...-..
T Consensus       357 ~le~a~a~~~------~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~  403 (409)
T TIGR00540       357 AFKNVAACKE------QLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLMLAI  403 (409)
T ss_pred             HHHHhHHhhc------CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence            9995433211      232222 4588999999999999999999998765443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.82  E-value=1.5e-16  Score=135.26  Aligned_cols=339  Identities=13%  Similarity=0.007  Sum_probs=233.5

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      +|+.+..+..+|.++...|+++.+...+.++.......     ..........+..+...|++++|...++++++.    
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~----   72 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR-----ATERERAHVEALSAWIAGDLPKALALLEQLLDD----   72 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Confidence            57888889999999999999999988888877765432     223344556788999999999999999999876    


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                          .|....++.. +..+...|++..+.....+++..    ..+.+|........+|.++...|++++|+..++++++.
T Consensus        73 ----~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~  143 (355)
T cd05804          73 ----YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL  143 (355)
T ss_pred             ----CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                2333344443 55666666666665555555543    24567777788889999999999999999999999986


Q ss_pred             HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHH
Q 016114          173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  252 (395)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  252 (395)
                      .       |+.   ..++..+|.++...|++++|+.++++++.....    ........+..+|.++...|++++|...+
T Consensus       144 ~-------p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~  209 (355)
T cd05804         144 N-------PDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIY  209 (355)
T ss_pred             C-------CCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3       333   345678999999999999999999999876421    11223456778999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCcchHHH--HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCch
Q 016114          253 RICLDIMTKTVGPDDQSISFP--MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD  330 (395)
Q Consensus       253 ~~a~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  330 (395)
                      ++++...     +..+.....  ...+...+...|....+..+ +.+........ +.+. ....-...+.++...|+.+
T Consensus       210 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~~~-~~~~~~~~a~~~~~~~~~~  281 (355)
T cd05804         210 DTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PDHG-LAFNDLHAALALAGAGDKD  281 (355)
T ss_pred             HHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-Cccc-chHHHHHHHHHHhcCCCHH
Confidence            9985421     111111111  11223334445544433333 22222222211 1111 1122235778888899888


Q ss_pred             hHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhh
Q 016114          331 TKLLELLKRVLRIQEREF-GSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  392 (395)
Q Consensus       331 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  392 (395)
                       +|...++.......... ..............+.++...|++++|...+..++.+...++.|
T Consensus       282 -~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs  343 (355)
T cd05804         282 -ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS  343 (355)
T ss_pred             -HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence             89999888877655410 01123345667778899999999999999999999999877654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK12370 invasion protein regulator; Provisional

Probab=99.82  E-value=6.4e-17  Score=143.88  Aligned_cols=253  Identities=14%  Similarity=0.106  Sum_probs=192.1

Q ss_pred             CchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHc---------CChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114           73 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE---------GKAVDAESVFSRILKIYTKVYGENDGRVG  143 (395)
Q Consensus        73 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~  143 (395)
                      +.+++|+..|++++++        +|....++..+|.++...         +++++|...+++++++        +|...
T Consensus       275 ~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~  338 (553)
T PRK12370        275 YSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNP  338 (553)
T ss_pred             HHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCH
Confidence            5678999999999876        566777888888877643         3478999999999886        45566


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114          144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  223 (395)
Q Consensus       144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  223 (395)
                      .++..+|.++...|++++|+..+++++++       .|++   ..++..+|.++...|++++|+..+++++++.      
T Consensus       339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-------~P~~---~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~------  402 (553)
T PRK12370        339 QALGLLGLINTIHSEYIVGSLLFKQANLL-------SPIS---ADIKYYYGWNLFMAGQLEEALQTINECLKLD------  402 (553)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------
Confidence            78889999999999999999999999986       3343   3456889999999999999999999999862      


Q ss_pred             CChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 016114          224 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  303 (395)
Q Consensus       224 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  303 (395)
                        |........++.++...|++++|+..+++++..       ..|.....+..+|.++...|++++|...+.+...    
T Consensus       403 --P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~----  469 (553)
T PRK12370        403 --PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST----  469 (553)
T ss_pred             --CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh----
Confidence              222233344555677789999999999998762       2355666788999999999999999999877543    


Q ss_pred             HcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHH
Q 016114          304 AFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  383 (395)
Q Consensus       304 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  383 (395)
                          ..|........++..+...|  + +|...+++.++.....  +.++      ..++.++.-.|+.+.+..+ +++.
T Consensus       470 ----~~~~~~~~~~~l~~~~~~~g--~-~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g~~~~~~~~-~~~~  533 (553)
T PRK12370        470 ----QEITGLIAVNLLYAEYCQNS--E-RALPTIREFLESEQRI--DNNP------GLLPLVLVAHGEAIAEKMW-NKFK  533 (553)
T ss_pred             ----ccchhHHHHHHHHHHHhccH--H-HHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHhhhHHHHHH-HHhh
Confidence                33444556777888888888  3 7888788866654431  2222      2267788888888888777 6665


Q ss_pred             HHH
Q 016114          384 NLR  386 (395)
Q Consensus       384 ~~~  386 (395)
                      +-+
T Consensus       534 ~~~  536 (553)
T PRK12370        534 NED  536 (553)
T ss_pred             ccc
Confidence            443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.81  E-value=2.4e-17  Score=151.57  Aligned_cols=308  Identities=10%  Similarity=0.029  Sum_probs=172.4

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChH-------------------------------HHHHHHHHHH
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------------------------------LLVTSLLGMA   66 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------------------------~~~~~~~~l~   66 (395)
                      .+|+.+...|...|++++|+.+|+++.....   .++..                               ....++..+.
T Consensus       190 ~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~---~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li  266 (697)
T PLN03081        190 ASWGTIIGGLVDAGNYREAFALFREMWEDGS---DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI  266 (697)
T ss_pred             eeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC---CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence            4577788888888999999999888764210   01100                               0112345567


Q ss_pred             HHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 016114           67 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  146 (395)
Q Consensus        67 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  146 (395)
                      ..|.+.|++++|...|++..           +....+|+.+...|...|++++|..+|.+....     + -.|+ ..++
T Consensus       267 ~~y~k~g~~~~A~~vf~~m~-----------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-----g-~~pd-~~t~  328 (697)
T PLN03081        267 DMYSKCGDIEDARCVFDGMP-----------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-----G-VSID-QFTF  328 (697)
T ss_pred             HHHHHCCCHHHHHHHHHhCC-----------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HHHH
Confidence            77888888888888876531           123457788888888888888888888876542     1 1222 2356


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh
Q 016114          147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  226 (395)
Q Consensus       147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  226 (395)
                      ..+...+...|++++|...+..+++..     ..++    ..+++.+...|.+.|++++|...|++..+          +
T Consensus       329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g-----~~~d----~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~  389 (697)
T PLN03081        329 SIMIRIFSRLALLEHAKQAHAGLIRTG-----FPLD----IVANTALVDLYSKWGRMEDARNVFDRMPR----------K  389 (697)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhC-----CCCC----eeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C
Confidence            666666777777777777766665431     1111    12234455566666666666655554321          1


Q ss_pred             hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-----
Q 016114          227 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR-----  301 (395)
Q Consensus       227 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----  301 (395)
                       ...+|+.+...|...|+.++|.++|++....      .-.|+ ..++..+...+...|..++|.++|+...+..     
T Consensus       390 -d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~------g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~  461 (697)
T PLN03081        390 -NLISWNALIAGYGNHGRGTKAVEMFERMIAE------GVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR  461 (697)
T ss_pred             -CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence             1234555555555555555555555554331      11111 2233334444444444444444444433211     


Q ss_pred             ------------------------HHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHH
Q 016114          302 ------------------------EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML  357 (395)
Q Consensus       302 ------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  357 (395)
                                              .+.  +..|+ ..++..|...+...|+.+ .|...+++.+++        .|....
T Consensus       462 ~~~y~~li~~l~r~G~~~eA~~~~~~~--~~~p~-~~~~~~Ll~a~~~~g~~~-~a~~~~~~l~~~--------~p~~~~  529 (697)
T PLN03081        462 AMHYACMIELLGREGLLDEAYAMIRRA--PFKPT-VNMWAALLTACRIHKNLE-LGRLAAEKLYGM--------GPEKLN  529 (697)
T ss_pred             ccchHhHHHHHHhcCCHHHHHHHHHHC--CCCCC-HHHHHHHHHHHHHcCCcH-HHHHHHHHHhCC--------CCCCCc
Confidence                                    000  11122 223555555566666665 555555554422        233345


Q ss_pred             HHHHHHHHHHHhcchhhhchhhHHHHHH
Q 016114          358 TLKKVVSYLDKLGRKEEKFPLKKRLSNL  385 (395)
Q Consensus       358 ~~~~la~~~~~~g~~~~A~~~~~~a~~~  385 (395)
                      .+..++.+|...|++++|.++++...+.
T Consensus       530 ~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        530 NYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             chHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            6778888999999999999988876543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.80  E-value=5.4e-17  Score=129.78  Aligned_cols=204  Identities=16%  Similarity=0.113  Sum_probs=167.7

Q ss_pred             HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114           56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  135 (395)
Q Consensus        56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  135 (395)
                      +.....+..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|...+++++..     
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----   94 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-----   94 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence            355778899999999999999999999999875        4556678889999999999999999999999986     


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114          136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  215 (395)
Q Consensus       136 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  215 (395)
                         .|.....+.++|.++...|++++|...+++++...        ..+.....+.++|.++...|++++|...+.+++.
T Consensus        95 ---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  163 (234)
T TIGR02521        95 ---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP--------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ  163 (234)
T ss_pred             ---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               23334578899999999999999999999998732        1122234567899999999999999999999987


Q ss_pred             HHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHH
Q 016114          216 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  295 (395)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  295 (395)
                      ..        |.....+..+|.++...|++++|...+++++..        .+.....+..++.++...|+.++|..+.+
T Consensus       164 ~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  227 (234)
T TIGR02521       164 ID--------PQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGA  227 (234)
T ss_pred             hC--------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            52        233456788999999999999999999999874        13344556678899999999999998877


Q ss_pred             HHHH
Q 016114          296 EALY  299 (395)
Q Consensus       296 ~al~  299 (395)
                      ....
T Consensus       228 ~~~~  231 (234)
T TIGR02521       228 QLQK  231 (234)
T ss_pred             HHHh
Confidence            6544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.80  E-value=5.9e-17  Score=129.54  Aligned_cols=206  Identities=16%  Similarity=0.136  Sum_probs=168.3

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   91 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   91 (395)
                      +.+..+..+..+|..+...|++++|+..++++++.        .|....++..+|.++...|++++|+..+++++..   
T Consensus        26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---   94 (234)
T TIGR02521        26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL---   94 (234)
T ss_pred             cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Confidence            34456788899999999999999999999999875        2344567888999999999999999999999886   


Q ss_pred             hcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114           92 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  171 (395)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  171 (395)
                           .|.....+..+|.++...|++++|...+.+++...      ..+.....+..+|.++...|++++|...+.+++.
T Consensus        95 -----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  163 (234)
T TIGR02521        95 -----NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ  163 (234)
T ss_pred             -----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 34445688899999999999999999999998641      2344456788899999999999999999999988


Q ss_pred             HHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHH
Q 016114          172 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  251 (395)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  251 (395)
                      ..       ++.   ...+..+|.++...|++++|..++++++...     +.   ....+..++.++...|+.++|..+
T Consensus       164 ~~-------~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~a~~~  225 (234)
T TIGR02521       164 ID-------PQR---PESLLELAELYYLRGQYKDARAYLERYQQTY-----NQ---TAESLWLGIRIARALGDVAAAQRY  225 (234)
T ss_pred             hC-------cCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHHhhHHHHHHH
Confidence            52       222   3356789999999999999999999998761     12   234455778899999999999988


Q ss_pred             HHHHHH
Q 016114          252 LRICLD  257 (395)
Q Consensus       252 ~~~a~~  257 (395)
                      .+....
T Consensus       226 ~~~~~~  231 (234)
T TIGR02521       226 GAQLQK  231 (234)
T ss_pred             HHHHHh
Confidence            776544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.3e-16  Score=126.94  Aligned_cols=316  Identities=14%  Similarity=0.139  Sum_probs=234.6

Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114            9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   88 (395)
Q Consensus         9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   88 (395)
                      +.+..|.........+.++.....+..+..++-.-...        -+.....+..+|.+++..|++.+|+..|+++..+
T Consensus       190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~--------lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~  261 (564)
T KOG1174|consen  190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTT--------LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA  261 (564)
T ss_pred             cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhcc--------CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC
Confidence            34445554444445555554333333333333322221        2445667888999999999999999999998875


Q ss_pred             HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016114           89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  168 (395)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  168 (395)
                              +|......-..|.++...|++++-..+-...+.+.        ...+.-++.-+...+..+++..|+.+-++
T Consensus       262 --------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK  325 (564)
T KOG1174|consen  262 --------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV--------KYTASHWFVHAQLLYDEKKFERALNFVEK  325 (564)
T ss_pred             --------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh--------hcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence                    67778888888999999999998877776666542        12333455567778889999999999999


Q ss_pred             HHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHH
Q 016114          169 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  248 (395)
Q Consensus       169 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  248 (395)
                      +++.-.       .+   ...+...|.++...|+.++|+-.|+.|..+.        |....+|..|..+|...|++.+|
T Consensus       326 ~I~~~~-------r~---~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--------p~rL~~Y~GL~hsYLA~~~~kEA  387 (564)
T KOG1174|consen  326 CIDSEP-------RN---HEALILKGRLLIALERHTQAVIAFRTAQMLA--------PYRLEIYRGLFHSYLAQKRFKEA  387 (564)
T ss_pred             HhccCc-------cc---chHHHhccHHHHhccchHHHHHHHHHHHhcc--------hhhHHHHHHHHHHHHhhchHHHH
Confidence            988532       11   3345678999999999999999999988763        56678899999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCcchHHHHHHHH-HHHHh-cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc
Q 016114          249 ERLLRICLDIMTKTVGPDDQSISFPMLHLG-ITLYH-LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL  326 (395)
Q Consensus       249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~  326 (395)
                      .-..+.++..+        +..+.++..+| .++.. -.--++|.+++++++.+.        |....+-..++.++...
T Consensus       388 ~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--------P~Y~~AV~~~AEL~~~E  451 (564)
T KOG1174|consen  388 NALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--------PIYTPAVNLIAELCQVE  451 (564)
T ss_pred             HHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--------CccHHHHHHHHHHHHhh
Confidence            99988888754        33455555564 33332 334578999999988753        66667778899999999


Q ss_pred             CCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhh
Q 016114          327 GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  392 (395)
Q Consensus       327 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  392 (395)
                      |.++ .++.++++.+..+..         ...+..||.++...+.+.+|+.+|..|+.+.|+.+.+
T Consensus       452 g~~~-D~i~LLe~~L~~~~D---------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s  507 (564)
T KOG1174|consen  452 GPTK-DIIKLLEKHLIIFPD---------VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT  507 (564)
T ss_pred             Cccc-hHHHHHHHHHhhccc---------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence            9999 999999999976422         3567889999999999999999999999998876544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.80  E-value=6e-17  Score=132.25  Aligned_cols=214  Identities=14%  Similarity=0.105  Sum_probs=157.3

Q ss_pred             hhhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHH
Q 016114            5 IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR   84 (395)
Q Consensus         5 ~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   84 (395)
                      ++....-+++..+..++.+|.++...|++++|+..|++++++        .|....+++.+|.++...|++++|+..|++
T Consensus        52 ~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~  123 (296)
T PRK11189         52 ILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDS  123 (296)
T ss_pred             HHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            333334455667888999999999999999999999999986        234467889999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 016114           85 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  164 (395)
Q Consensus        85 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  164 (395)
                      ++++        .|....++.++|.++...|++++|+..+++++..     .++++.. ..+   ..+....+++++|+.
T Consensus       124 Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~-~~~---~~l~~~~~~~~~A~~  186 (296)
T PRK11189        124 VLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYR-ALW---LYLAESKLDPKQAKE  186 (296)
T ss_pred             HHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH-HHH---HHHHHccCCHHHHHH
Confidence            9987        5667788999999999999999999999999986     3334421 111   223456789999999


Q ss_pred             HHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhc
Q 016114          165 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  244 (395)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  244 (395)
                      .+.++....      .++  ..     ..+.+....|+..++ ..+..+.+..+... .-.+....+++++|.++...|+
T Consensus       187 ~l~~~~~~~------~~~--~~-----~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~ea~~~Lg~~~~~~g~  251 (296)
T PRK11189        187 NLKQRYEKL------DKE--QW-----GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCETYFYLAKYYLSLGD  251 (296)
T ss_pred             HHHHHHhhC------Ccc--cc-----HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHCCC
Confidence            998766421      111  11     134555567777554 24444332211100 0124456789999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 016114          245 FVEAERLLRICLDI  258 (395)
Q Consensus       245 ~~~A~~~~~~a~~~  258 (395)
                      +++|+.+|++++..
T Consensus       252 ~~~A~~~~~~Al~~  265 (296)
T PRK11189        252 LDEAAALFKLALAN  265 (296)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999973

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.79  E-value=9.3e-17  Score=117.95  Aligned_cols=203  Identities=20%  Similarity=0.193  Sum_probs=168.3

Q ss_pred             hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114           98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  177 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  177 (395)
                      .....+...||.-|...|++..|..-++++++.        +|....++..+|.+|...|+.+.|.+.|++|+.+..   
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p---  100 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP---  100 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC---
Confidence            345677889999999999999999999999987        677788999999999999999999999999999642   


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                          +.   ..+++|.|..++.+|++++|...|++|+..      +..+....++.|+|.|..+.|+++.|..+|+++++
T Consensus       101 ----~~---GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~  167 (250)
T COG3063         101 ----NN---GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE  167 (250)
T ss_pred             ----Cc---cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence                22   556799999999999999999999999873      45667778999999999999999999999999998


Q ss_pred             HHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114          258 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  337 (395)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  337 (395)
                      +        +|........++..+...|++..|..++++.....        +..+.++.....+-...|+.. .+-.+-
T Consensus       168 ~--------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~--------~~~A~sL~L~iriak~~gd~~-~a~~Y~  230 (250)
T COG3063         168 L--------DPQFPPALLELARLHYKAGDYAPARLYLERYQQRG--------GAQAESLLLGIRIAKRLGDRA-AAQRYQ  230 (250)
T ss_pred             h--------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHhccHH-HHHHHH
Confidence            4        56666677899999999999999999988765422        244556666667777788776 555444


Q ss_pred             HHHH
Q 016114          338 KRVL  341 (395)
Q Consensus       338 ~~al  341 (395)
                      .+..
T Consensus       231 ~qL~  234 (250)
T COG3063         231 AQLQ  234 (250)
T ss_pred             HHHH
Confidence            4433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.79  E-value=8.4e-16  Score=118.46  Aligned_cols=272  Identities=14%  Similarity=0.158  Sum_probs=211.7

Q ss_pred             HHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC--hhH
Q 016114           65 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND--GRV  142 (395)
Q Consensus        65 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~  142 (395)
                      -|.-+.-..+.++|+..|...++.        +|...++...||.+|...|..+.|+...+..++.      ++-  ...
T Consensus        41 ~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s------pdlT~~qr  106 (389)
T COG2956          41 KGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES------PDLTFEQR  106 (389)
T ss_pred             hHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC------CCCchHHH
Confidence            355566778899999999988874        6788899999999999999999999988776642      222  235


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114          143 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  222 (395)
Q Consensus       143 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  222 (395)
                      ..+...||.-|...|-++.|...|....+.          +.....++..|..+|....+|++|++..++...+..+   
T Consensus       107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de----------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---  173 (389)
T COG2956         107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDE----------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---  173 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHhcc----------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---
Confidence            567889999999999999999999987652          2333556788999999999999999998877665322   


Q ss_pred             CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114          223 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  302 (395)
Q Consensus       223 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  302 (395)
                      +.....+..+..++..+....+++.|...+.++++        .+|....+-..+|.+....|++..|++.++.+++   
T Consensus       174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq--------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e---  242 (389)
T COG2956         174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQ--------ADKKCVRASIILGRVELAKGDYQKAVEALERVLE---  242 (389)
T ss_pred             cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh--------hCccceehhhhhhHHHHhccchHHHHHHHHHHHH---
Confidence            23456778888999999999999999999999998        3567777888999999999999999999998877   


Q ss_pred             HHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHH
Q 016114          303 IAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL  382 (395)
Q Consensus       303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  382 (395)
                          .++..+..+...|..+|.+.|+.+ +...++.++.+....      +   .....++..-....-.+.|..+..+-
T Consensus       243 ----Qn~~yl~evl~~L~~~Y~~lg~~~-~~~~fL~~~~~~~~g------~---~~~l~l~~lie~~~G~~~Aq~~l~~Q  308 (389)
T COG2956         243 ----QNPEYLSEVLEMLYECYAQLGKPA-EGLNFLRRAMETNTG------A---DAELMLADLIELQEGIDAAQAYLTRQ  308 (389)
T ss_pred             ----hChHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHccCC------c---cHHHHHHHHHHHhhChHHHHHHHHHH
Confidence                455567788889999999999999 999999998875321      1   22333444444455556666665555


Q ss_pred             HHHHHH
Q 016114          383 SNLRMK  388 (395)
Q Consensus       383 ~~~~~~  388 (395)
                      +.-.|.
T Consensus       309 l~r~Pt  314 (389)
T COG2956         309 LRRKPT  314 (389)
T ss_pred             HhhCCc
Confidence            544433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.79  E-value=3.8e-16  Score=127.58  Aligned_cols=228  Identities=14%  Similarity=0.036  Sum_probs=165.8

Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHH
Q 016114           29 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG  108 (395)
Q Consensus        29 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  108 (395)
                      ..+..+.++..+.+++...+    .+++..+..++.+|.++...|++++|+..|++++++        .|....+++.+|
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg  105 (296)
T PRK11189         38 PTLQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLG  105 (296)
T ss_pred             CchHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHH
Confidence            34566778888888775321    233466788999999999999999999999999986        567788999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHH
Q 016114          109 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN  188 (395)
Q Consensus       109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  188 (395)
                      .++...|++++|+..|++++++        +|....++.++|.++...|++++|+..++++++.       .|+++.. .
T Consensus       106 ~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-------~P~~~~~-~  169 (296)
T PRK11189        106 IYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-------DPNDPYR-A  169 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHH-H
Confidence            9999999999999999999987        4555678999999999999999999999999985       3444421 1


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCc
Q 016114          189 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  268 (395)
Q Consensus       189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  268 (395)
                      .   ...+....+++++|+..+.++....       ++..   + ..+.+....|+..++ ..++.+........ ...+
T Consensus       170 ~---~~~l~~~~~~~~~A~~~l~~~~~~~-------~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~  233 (296)
T PRK11189        170 L---WLYLAESKLDPKQAKENLKQRYEKL-------DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAE  233 (296)
T ss_pred             H---HHHHHHccCCHHHHHHHHHHHHhhC-------Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHH
Confidence            1   1223456788999999998765321       1111   1 123444455665443 23333332111000 0123


Q ss_pred             chHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114          269 SISFPMLHLGITLYHLNRDKEAEKLVLEALYI  300 (395)
Q Consensus       269 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  300 (395)
                      ....++.++|.++...|++++|+.+|+++++.
T Consensus       234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        234 RLCETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            45678999999999999999999999999974

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.79  E-value=6.7e-16  Score=134.35  Aligned_cols=328  Identities=19%  Similarity=0.169  Sum_probs=230.9

Q ss_pred             hcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHH
Q 016114            8 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT   87 (395)
Q Consensus         8 ~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   87 (395)
                      .+-..+|....+|+.||.+|..+|+.+++...+-.|-.+     .+.++   ..|..++.....+|++.+|.-+|.+|+.
T Consensus       164 EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-----~p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~  235 (895)
T KOG2076|consen  164 EVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-----NPKDY---ELWKRLADLSEQLGNINQARYCYSRAIQ  235 (895)
T ss_pred             HHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----CCCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence            333456888889999999999999999999988777654     23232   5688889999999999999999999998


Q ss_pred             HHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHH
Q 016114           88 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELY  166 (395)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~  166 (395)
                      .        .|......+..+.+|.++|+...|...|.+.+....    +.+.. ........+..+...++-+.|++.+
T Consensus       236 ~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p----~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l  303 (895)
T KOG2076|consen  236 A--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP----PVDIERIEDLIRRVAHYFITHNERERAAKAL  303 (895)
T ss_pred             c--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC----chhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            7        455677888899999999999999999999988742    11112 2333445577777888888888888


Q ss_pred             HHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------------HH-------
Q 016114          167 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL----------------------IT-------  217 (395)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------~~-------  217 (395)
                      +.++......    ...    ..++.++.++.....++.|......-..                      +.       
T Consensus       304 e~~~s~~~~~----~~~----ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s  375 (895)
T KOG2076|consen  304 EGALSKEKDE----ASL----EDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS  375 (895)
T ss_pred             HHHHhhcccc----ccc----cHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence            8887732111    111    1123455555555555555554433222                      00       


Q ss_pred             ---------------------------HhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcch
Q 016114          218 ---------------------------EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  270 (395)
Q Consensus       218 ---------------------------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  270 (395)
                                                 .........+....+..++..+...|++.+|+.++..+..       ......
T Consensus       376 ~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~-------~~~~~~  448 (895)
T KOG2076|consen  376 YDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN-------REGYQN  448 (895)
T ss_pred             ccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-------Cccccc
Confidence                                       0000001234456678899999999999999999988765       223344


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-HhccC
Q 016114          271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ-EREFG  349 (395)
Q Consensus       271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~  349 (395)
                      ...|..+|.||..+|.+++|+++|++++...        |+...+...|+.++..+|+++ +|.+.++....-- +..-+
T Consensus       449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--------p~~~D~Ri~Lasl~~~~g~~E-kalEtL~~~~~~D~~~~e~  519 (895)
T KOG2076|consen  449 AFVWYKLARCYMELGEYEEAIEFYEKVLILA--------PDNLDARITLASLYQQLGNHE-KALETLEQIINPDGRNAEA  519 (895)
T ss_pred             hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCchhhhhhHHHHHHhcCCHH-HHHHHHhcccCCCccchhh
Confidence            6789999999999999999999999999854        444557889999999999999 8887776643100 00000


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcchhhhchhh
Q 016114          350 SESEEVMLTLKKVVSYLDKLGRKEEKFPLK  379 (395)
Q Consensus       350 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  379 (395)
                      ...+...........++...|+.++=+..-
T Consensus       520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~  549 (895)
T KOG2076|consen  520 CAWEPERRILAHRCDILFQVGKREEFINTA  549 (895)
T ss_pred             ccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            112334566788899999999998844433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.79  E-value=5e-15  Score=141.38  Aligned_cols=312  Identities=11%  Similarity=0.029  Sum_probs=231.7

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   95 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   95 (395)
                      ...+...+|.++...|++++|..++++++....   ..+......+...+|.++...|++++|...+++++.......  
T Consensus       451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g--  525 (903)
T PRK04841        451 QAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD--  525 (903)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc--
Confidence            344556678899999999999999999987522   122223455677899999999999999999999999877643  


Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      .......++..+|.++...|++++|...+.+++.+.....+...+.....+..+|.++...|++++|...+.+++.+...
T Consensus       526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~  605 (903)
T PRK04841        526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN  605 (903)
T ss_pred             chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence            22334557788999999999999999999999999877643333444455678899999999999999999999998764


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHH-HHHHHHHhhhcHHHHHHHHHH
Q 016114          176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL-NLAASYSRSKNFVEAERLLRI  254 (395)
Q Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~la~~~~~~~~~~~A~~~~~~  254 (395)
                      .   +  +.....++..++.++...|++++|...+.++..+.....  .......... .....+...|+.+.|..++..
T Consensus       606 ~---~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~  678 (903)
T PRK04841        606 Y---Q--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR--YHSDWIANADKVRLIYWQMTGDKEAAANWLRQ  678 (903)
T ss_pred             c---C--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc--ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            2   1  223345667899999999999999999999988754421  1111111111 122445567888998888665


Q ss_pred             HHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHH
Q 016114          255 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL  334 (395)
Q Consensus       255 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~  334 (395)
                      ....   .. ............++.++...|++++|...+++++......  ........++..+|.++...|+.+ +|.
T Consensus       679 ~~~~---~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~--g~~~~~a~~~~~la~a~~~~G~~~-~A~  751 (903)
T PRK04841        679 APKP---EF-ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL--RLMSDLNRNLILLNQLYWQQGRKS-EAQ  751 (903)
T ss_pred             cCCC---CC-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHcCCHH-HHH
Confidence            4320   00 0111122235678999999999999999999999986553  233466778889999999999999 999


Q ss_pred             HHHHHHHHHHHh
Q 016114          335 ELLKRVLRIQER  346 (395)
Q Consensus       335 ~~~~~al~~~~~  346 (395)
                      ..+.+++++...
T Consensus       752 ~~L~~Al~la~~  763 (903)
T PRK04841        752 RVLLEALKLANR  763 (903)
T ss_pred             HHHHHHHHHhCc
Confidence            999999998755

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.78  E-value=2.6e-15  Score=128.18  Aligned_cols=304  Identities=12%  Similarity=0.081  Sum_probs=206.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      +...+.-|......|+|++|.....++-+.      .+.|..  .+...+......|+++.|..++.++.+.        
T Consensus        84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p~l--~~llaA~aA~~~g~~~~A~~~l~~A~~~--------  147 (398)
T PRK10747         84 ARKQTEQALLKLAEGDYQQVEKLMTRNADH------AEQPVV--NYLLAAEAAQQRGDEARANQHLERAAEL--------  147 (398)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------ccchHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence            344456777778889999999766654332      122222  2344466668999999999999999764        


Q ss_pred             Chhh-hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114           97 SADL-VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus        97 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      .|+. .......+.++...|++++|...+++..+.        .|....++..++.+|...|++++|...+.+..+... 
T Consensus       148 ~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-  218 (398)
T PRK10747        148 ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-  218 (398)
T ss_pred             CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-
Confidence            2222 223334489999999999999999998875        344456778889999999999999999998876421 


Q ss_pred             cccCCCCchHHH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHH
Q 016114          176 SNYMSLDDSIME----NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  251 (395)
Q Consensus       176 ~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  251 (395)
                           .++....    .++..+........+    .+.+.+..+...+    ..+........++..+...|+.++|...
T Consensus       219 -----~~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp~----~~~~~~~~~~~~A~~l~~~g~~~~A~~~  285 (398)
T PRK10747        219 -----GDEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQSR----KTRHQVALQVAMAEHLIECDDHDTAQQI  285 (398)
T ss_pred             -----CCHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCCH----HHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence                 1222222    122222211112222    2223222222111    1233456677899999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchh
Q 016114          252 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT  331 (395)
Q Consensus       252 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  331 (395)
                      ++++++.      +.++...   ...+  ....++.+++++..++.++.        +|+....+..+|.++...++++ 
T Consensus       286 L~~~l~~------~~~~~l~---~l~~--~l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~~~-  345 (398)
T PRK10747        286 ILDGLKR------QYDERLV---LLIP--RLKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGEWQ-  345 (398)
T ss_pred             HHHHHhc------CCCHHHH---HHHh--hccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHH-
Confidence            9988761      2233222   1222  23458999999888887753        3455557889999999999999 


Q ss_pred             HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114          332 KLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  387 (395)
Q Consensus       332 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  387 (395)
                      +|.++|+++++.        .|+. ..+..++.++..+|+.++|..+|++++.+..
T Consensus       346 ~A~~~le~al~~--------~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~  392 (398)
T PRK10747        346 EASLAFRAALKQ--------RPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLTL  392 (398)
T ss_pred             HHHHHHHHHHhc--------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            999999999975        2322 3456799999999999999999999987653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.77  E-value=4.6e-15  Score=116.27  Aligned_cols=308  Identities=16%  Similarity=0.093  Sum_probs=236.7

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC-
Q 016114           19 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES-   97 (395)
Q Consensus        19 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-   97 (395)
                      .+-.+..+...+|.|++++.+--..++.....  .+......++.+++..+....++.+++.+....+.+-    +... 
T Consensus        45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~  118 (518)
T KOG1941|consen   45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAG  118 (518)
T ss_pred             HhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcc
Confidence            34455667778889988888777666666553  3445677889999999999999999998887776642    2111 


Q ss_pred             hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114           98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  177 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  177 (395)
                      ..-......+|..+..++.|+++++.|+.|+.+.....  +......++..||.++....++++|..+..+|.++.+...
T Consensus       119 ~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~--D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~  196 (518)
T KOG1941|consen  119 QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND--DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG  196 (518)
T ss_pred             cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC--CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence            22235666789999999999999999999999976641  2223456788999999999999999999999999987753


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                      ..+-+......+++.++..+..+|+.-.|.++.+++.++.-...  +.+.....+..+|.+|...|+.+.|..-|++|+.
T Consensus       197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence            22333444566778899999999999999999999999987765  5677788899999999999999999999999998


Q ss_pred             HHHHhhCCCCcchHHHHHHHHHHHHhcCChHH-----HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhH
Q 016114          258 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-----AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK  332 (395)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  332 (395)
                      +....  .+......++...+.++....-..+     |++.-++.+++..++  .....+......++.+|..+|..+ +
T Consensus       275 ~m~~~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I--G~K~~vlK~hcrla~iYrs~gl~d-~  349 (518)
T KOG1941|consen  275 TMASL--GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI--GAKLSVLKLHCRLASIYRSKGLQD-E  349 (518)
T ss_pred             HHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhccchh-H
Confidence            77665  3444556677777777766544444     999999999998776  344556778888999999998766 5


Q ss_pred             HHHHHHHHH
Q 016114          333 LLELLKRVL  341 (395)
Q Consensus       333 A~~~~~~al  341 (395)
                      -...+.++-
T Consensus       350 ~~~h~~ra~  358 (518)
T KOG1941|consen  350 LRAHVVRAH  358 (518)
T ss_pred             HHHHHHHHH
Confidence            555555443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.77  E-value=1.5e-16  Score=146.41  Aligned_cols=299  Identities=13%  Similarity=0.087  Sum_probs=210.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      ..+++.+...|...|++++|..+|++..+          | ...+++.+...|...|++++|+..|++....-   ..++
T Consensus       158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----------~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~p~  223 (697)
T PLN03081        158 QYMMNRVLLMHVKCGMLIDARRLFDEMPE----------R-NLASWGTIIGGLVDAGNYREAFALFREMWEDG---SDAE  223 (697)
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHhcCCC----------C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC---CCCC
Confidence            34566777888888888888888876532          1 13457788889999999999999999876421   0000


Q ss_pred             -------------------------------ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 016114           97 -------------------------------SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  145 (395)
Q Consensus        97 -------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  145 (395)
                                                     ......+++.+...|.+.|++++|...|++..           +....+
T Consensus       224 ~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----------~~~~vt  292 (697)
T PLN03081        224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----------EKTTVA  292 (697)
T ss_pred             hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----------CCChhH
Confidence                                           01122345667888999999999998887642           123457


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCC
Q 016114          146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH  225 (395)
Q Consensus       146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  225 (395)
                      |+.+...|...|++++|..+|++..+..     ..++.    .++..+...+...|++++|...+...++.       ..
T Consensus       293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g-----~~pd~----~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~  356 (697)
T PLN03081        293 WNSMLAGYALHGYSEEALCLYYEMRDSG-----VSIDQ----FTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GF  356 (697)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCCH----HHHHHHHHHHHhccchHHHHHHHHHHHHh-------CC
Confidence            8899999999999999999999876521     22232    35677888999999999999999887764       11


Q ss_pred             hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc
Q 016114          226 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  305 (395)
Q Consensus       226 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  305 (395)
                      +....+++.+...|.+.|++++|...|++..+          + ...+|..+...|...|+.++|.++|++..+.-    
T Consensus       357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g----  421 (697)
T PLN03081        357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEG----  421 (697)
T ss_pred             CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence            22345677899999999999999999987532          2 23578899999999999999999999876521    


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHH
Q 016114          306 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR  381 (395)
Q Consensus       306 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  381 (395)
                        -.|+ ..++..+...+.+.|..+ +|..+|+...+..    + ..|+ ...+..+..+|.+.|++++|.+++++
T Consensus       422 --~~Pd-~~T~~~ll~a~~~~g~~~-~a~~~f~~m~~~~----g-~~p~-~~~y~~li~~l~r~G~~~eA~~~~~~  487 (697)
T PLN03081        422 --VAPN-HVTFLAVLSACRYSGLSE-QGWEIFQSMSENH----R-IKPR-AMHYACMIELLGREGLLDEAYAMIRR  487 (697)
T ss_pred             --CCCC-HHHHHHHHHHHhcCCcHH-HHHHHHHHHHHhc----C-CCCC-ccchHhHHHHHHhcCCHHHHHHHHHH
Confidence              1222 334666777778888887 7888777765421    1 1111 23455666666667777776666554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.75  E-value=2.8e-15  Score=136.31  Aligned_cols=183  Identities=12%  Similarity=-0.069  Sum_probs=138.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH-Hh--h----
Q 016114          191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT-KT--V----  263 (395)
Q Consensus       191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~--~----  263 (395)
                      ...|..|...+++++|+.+|..++.-.....  ..+........|...|...+++++|..++++..+... ..  .    
T Consensus       331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~--~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~  408 (822)
T PRK14574        331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTF--RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG  408 (822)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHhhcccccc--CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence            4578888888888888888887765321100  1122233345678889999999999999998876211 00  1    


Q ss_pred             CCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114          264 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  343 (395)
Q Consensus       264 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  343 (395)
                      ...+|+.......++.++...|++.+|++.+++.+...        |........+|.++...|.+. +|...++.+..+
T Consensus       409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--------P~n~~l~~~~A~v~~~Rg~p~-~A~~~~k~a~~l  479 (822)
T PRK14574        409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--------PANQNLRIALASIYLARDLPR-KAEQELKAVESL  479 (822)
T ss_pred             CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhh
Confidence            12456777888899999999999999999999987644        444456789999999999999 999999777653


Q ss_pred             HHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhh
Q 016114          344 QEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  392 (395)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  392 (395)
                              +|+...+....+.++..+|++.+|......+++..|+...+
T Consensus       480 --------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~  520 (822)
T PRK14574        480 --------APRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS  520 (822)
T ss_pred             --------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence                    45567788899999999999999999999888877766544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=8.4e-15  Score=120.68  Aligned_cols=242  Identities=14%  Similarity=0.068  Sum_probs=190.5

Q ss_pred             hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCC
Q 016114          103 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  182 (395)
Q Consensus       103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  182 (395)
                      ..-.+|.......++..|+..|..++++.         .....+.+.+.+|...|.+.+.+.....+++.....   ..+
T Consensus       226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~---rad  293 (539)
T KOG0548|consen  226 KEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL---RAD  293 (539)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH---HHH
Confidence            45578888899999999999999999883         334567889999999999999999999988865542   223


Q ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh--hh----------------CCCChhHHHHHHHHHHHHHhhhc
Q 016114          183 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK--YK----------------GKEHPSFVTHLLNLAASYSRSKN  244 (395)
Q Consensus       183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~----------------~~~~~~~~~~~~~la~~~~~~~~  244 (395)
                      ...++.+...+|..|...++++.|+.+|++++.-.+.  ..                .-..|....-...-|..+...|+
T Consensus       294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd  373 (539)
T KOG0548|consen  294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD  373 (539)
T ss_pred             HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC
Confidence            3445666667888999999999999999998765432  00                00133344444556889999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 016114          245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQT  324 (395)
Q Consensus       245 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~  324 (395)
                      |..|+..|.+++.        ..|.....|.+.|.||..+|.+..|+...+.++++        +|.....+..-|.++.
T Consensus       374 y~~Av~~YteAIk--------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~  437 (539)
T KOG0548|consen  374 YPEAVKHYTEAIK--------RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALR  437 (539)
T ss_pred             HHHHHHHHHHHHh--------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHH
Confidence            9999999999987        35888999999999999999999999999999875        4777888999999999


Q ss_pred             HcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHH
Q 016114          325 RLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR  381 (395)
Q Consensus       325 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  381 (395)
                      .+.+++ +|.+.|+++++.        +|....+...+.+++..+.......+..++
T Consensus       438 ~mk~yd-kAleay~eale~--------dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r  485 (539)
T KOG0548|consen  438 AMKEYD-KALEAYQEALEL--------DPSNAEAIDGYRRCVEAQRGDETPEETKRR  485 (539)
T ss_pred             HHHHHH-HHHHHHHHHHhc--------CchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence            999999 999999999964        466777777888888765444444444444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.75  E-value=7.3e-15  Score=133.65  Aligned_cols=333  Identities=9%  Similarity=0.016  Sum_probs=205.7

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      .|..+...+..+.+....|+++.|+..|+++++..     +.++.   ....+..++...|+.++|+.++++++.     
T Consensus        30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-----P~~~~---av~dll~l~~~~G~~~~A~~~~eka~~-----   96 (822)
T PRK14574         30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-----PLQSG---QVDDWLQIAGWAGRDQEVIDVYERYQS-----   96 (822)
T ss_pred             CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-----ccchh---hHHHHHHHHHHcCCcHHHHHHHHHhcc-----
Confidence            44555667888899999999999999999998763     22211   111556666677888888888887761     


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                         ..+.....+..+|.++...|++++|++.|+++++.        +|....++..++.++...++.++|+..++++...
T Consensus        97 ---p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~  165 (822)
T PRK14574         97 ---SMNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAER  165 (822)
T ss_pred             ---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence               12333344555577888888888888888888765        2332344556677777777777777777776553


Q ss_pred             HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH----------------------------------
Q 016114          173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE----------------------------------  218 (395)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------------------------------  218 (395)
                      .       +.    ...+..++.++...++..+|+..++++++...                                  
T Consensus       166 d-------p~----~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~  234 (822)
T PRK14574        166 D-------PT----VQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVS  234 (822)
T ss_pred             C-------cc----hHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccC
Confidence            1       11    11112234444444555456666655544311                                  


Q ss_pred             -----------------------------------------hhhC------CCChhHHHHHHHHHHHHHhhhcHHHHHHH
Q 016114          219 -----------------------------------------KYKG------KEHPSFVTHLLNLAASYSRSKNFVEAERL  251 (395)
Q Consensus       219 -----------------------------------------~~~~------~~~~~~~~~~~~la~~~~~~~~~~~A~~~  251 (395)
                                                               ....      +.++....+..-.-.++...|++.+++..
T Consensus       235 ~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~  314 (822)
T PRK14574        235 AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKE  314 (822)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence                                                     1000      00111112222222334444555555555


Q ss_pred             HHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchh
Q 016114          252 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT  331 (395)
Q Consensus       252 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  331 (395)
                      |+....       ...+.-..+....|..|...+++++|+.+|++++.-.....  ..+........|...+...++++ 
T Consensus       315 y~~l~~-------~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~--~~~~~~~~~~~L~yA~ld~e~~~-  384 (822)
T PRK14574        315 YEAMEA-------EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF--RNSDDLLDADDLYYSLNESEQLD-  384 (822)
T ss_pred             HHHhhh-------cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc--CCCcchHHHHHHHHHHHhcccHH-
Confidence            554332       22222234567789999999999999999998866331110  11222233457888899999999 


Q ss_pred             HHHHHHHHHHHHHH-hc--c----CCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          332 KLLELLKRVLRIQE-RE--F----GSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       332 ~A~~~~~~al~~~~-~~--~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                      +|..++++..+... ..  +    ...+|+.......++.++...|++.+|.+.+++.+...|...
T Consensus       385 ~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~  450 (822)
T PRK14574        385 KAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQ  450 (822)
T ss_pred             HHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            99999999876322 00  1    134677778888889999999999999999999887766543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.74  E-value=1.9e-14  Score=123.48  Aligned_cols=331  Identities=19%  Similarity=0.147  Sum_probs=227.6

Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh----Cc-------hhHHHHHHH
Q 016114           15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI----GR-------AKKAVEIYH   83 (395)
Q Consensus        15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~-------~~~A~~~~~   83 (395)
                      +....+..-..+....+..++++++..++++.....   .......++..+|.+|..+    ..       ..+++..++
T Consensus       392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale  468 (799)
T KOG4162|consen  392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE  468 (799)
T ss_pred             cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence            333434444455667899999999999999976332   2334456677777777543    22       334445555


Q ss_pred             HHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 016114           84 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV  163 (395)
Q Consensus        84 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  163 (395)
                      ++++.        +|....+.+.++.-|..+++.+.|..+..+++++       +..+.+.++..++.++...+++.+|+
T Consensus       469 ~av~~--------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l-------~~~~~~~~whLLALvlSa~kr~~~Al  533 (799)
T KOG4162|consen  469 EAVQF--------DPTDPLVIFYLALQYAEQRQLTSALDYAREALAL-------NRGDSAKAWHLLALVLSAQKRLKEAL  533 (799)
T ss_pred             HHHhc--------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh-------cCCccHHHHHHHHHHHhhhhhhHHHH
Confidence            55443        3334478889999999999999999999999987       23345678899999999999999999


Q ss_pred             HHHHHHHHHHHhcccCC----------CCchH-HHHHHHHH----------------------HHHHHHcCChHHHHHHH
Q 016114          164 ELYKKALRVIKDSNYMS----------LDDSI-MENMRIDL----------------------AELLHIVGRGQEGRELL  210 (395)
Q Consensus       164 ~~~~~a~~~~~~~~~~~----------~~~~~-~~~~~~~l----------------------a~~~~~~g~~~~A~~~~  210 (395)
                      ...+.+++-...+...-          .+... +..+...+                      +......++..+|....
T Consensus       534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s  613 (799)
T KOG4162|consen  534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS  613 (799)
T ss_pred             HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence            99999988654320000          00000 00000000                      00111122334444444


Q ss_pred             HHHHHHHHhhh----------------CCCCh--hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHH
Q 016114          211 EECLLITEKYK----------------GKEHP--SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF  272 (395)
Q Consensus       211 ~~al~~~~~~~----------------~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  272 (395)
                      .++........                +++++  .....+...+..+...++.++|..++.++-.+        .|....
T Consensus       614 r~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~  685 (799)
T KOG4162|consen  614 RYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSAS  685 (799)
T ss_pred             HHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHH
Confidence            44444332110                11111  11234556678888889999999888888764        467788


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHH--HHHHHHHHHHhccCC
Q 016114          273 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE--LLKRVLRIQEREFGS  350 (395)
Q Consensus       273 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~--~~~~al~~~~~~~~~  350 (395)
                      .++..|.++..+|++.+|...|..++.+.     |+|+.   +...+|.++...|+.. -|..  ++..++++       
T Consensus       686 ~~~~~G~~~~~~~~~~EA~~af~~Al~ld-----P~hv~---s~~Ala~~lle~G~~~-la~~~~~L~dalr~-------  749 (799)
T KOG4162|consen  686 VYYLRGLLLEVKGQLEEAKEAFLVALALD-----PDHVP---SMTALAELLLELGSPR-LAEKRSLLSDALRL-------  749 (799)
T ss_pred             HHHHhhHHHHHHHhhHHHHHHHHHHHhcC-----CCCcH---HHHHHHHHHHHhCCcc-hHHHHHHHHHHHhh-------
Confidence            89999999999999999999999998854     66654   5778999999999877 6766  88888875       


Q ss_pred             CCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114          351 ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  388 (395)
Q Consensus       351 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  388 (395)
                       +|...++|+.+|.++..+|+.++|.++|.-++++.+.
T Consensus       750 -dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S  786 (799)
T KOG4162|consen  750 -DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES  786 (799)
T ss_pred             -CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence             4555689999999999999999999999999988664

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.74  E-value=3.8e-16  Score=129.55  Aligned_cols=266  Identities=15%  Similarity=0.161  Sum_probs=194.7

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh
Q 016114           21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  100 (395)
Q Consensus        21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  100 (395)
                      +..|..+++.|+..+|.-.|+.++.-        +|..+++|..||.+....++-..|+..+++++++        +|..
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N  352 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN  352 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence            46788899999999999999999873        5788999999999999999999999999999997        7888


Q ss_pred             hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh--CCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114          101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY--GEND-GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  177 (395)
Q Consensus       101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  177 (395)
                      ..++..||..|...|.-.+|..++.+-+....+-.  .... .....    ...-......+..-.+.|-.+...   . 
T Consensus       353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~---~-  424 (579)
T KOG1125|consen  353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQ---L-  424 (579)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHh---C-
Confidence            89999999999999999999999998876421100  0000 00000    000000000111122223332221   1 


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                       ....+   ..++..||.+|...|+|++|+++|+.|+..        .|.....|+.||-.+....+.++|+..|++|++
T Consensus       425 -~~~~D---pdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  425 -PTKID---PDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             -CCCCC---hhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence             11122   345577999999999999999999999984        577788999999999999999999999999998


Q ss_pred             HHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH--HHHHHHHHHHHHHHcCCch
Q 016114          258 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP--VGEALDCLVSIQTRLGEDD  330 (395)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~  330 (395)
                      +        .|...++.++||..+..+|.|++|.++|-.|+.+.....+.....  .-.++..|-.++...++.+
T Consensus       493 L--------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  493 L--------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             c--------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            5        588889999999999999999999999999999987643322211  1123444445555555554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.74  E-value=1.7e-14  Score=112.37  Aligned_cols=283  Identities=16%  Similarity=0.131  Sum_probs=215.8

Q ss_pred             CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114           11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   90 (395)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   90 (395)
                      +.+|....+++..|.+|+..|+..-|+.-+.+++++        .|+...+....|.++..+|++++|+.-|..++..- 
T Consensus        66 e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~-  136 (504)
T KOG0624|consen   66 EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE-  136 (504)
T ss_pred             cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC-
Confidence            457888888999999999999999999999999986        36677788889999999999999999999988741 


Q ss_pred             HhcCCCChhh------------hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC
Q 016114           91 LNRGTESADL------------VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN  158 (395)
Q Consensus        91 ~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  158 (395)
                          ++....            ...+......+...|+...|+.+....+++        .|..+..+...+.+|...|+
T Consensus       137 ----~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e  204 (504)
T KOG0624|consen  137 ----PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGE  204 (504)
T ss_pred             ----CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCc
Confidence                111111            122333445566789999999999998887        57777788889999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHH---
Q 016114          159 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL---  235 (395)
Q Consensus       159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---  235 (395)
                      +..|+.-++.+-++..       ++   ...++.++.+++..|+.+.++...++++++     .++|......|..+   
T Consensus       205 ~k~AI~Dlk~askLs~-------Dn---Te~~ykis~L~Y~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv  269 (504)
T KOG0624|consen  205 PKKAIHDLKQASKLSQ-------DN---TEGHYKISQLLYTVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKV  269 (504)
T ss_pred             HHHHHHHHHHHHhccc-------cc---hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHH
Confidence            9999999998877542       22   345578999999999999999999999886     33443333333322   


Q ss_pred             ------HHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC
Q 016114          236 ------AASYSRSKNFVEAERLLRICLDIMTKTVGPD-DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  308 (395)
Q Consensus       236 ------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  308 (395)
                            +.-....++|.++++-.++.+..     .+. .+........+..|+..-|++.+|+..+.+++++.       
T Consensus       270 ~K~les~e~~ie~~~~t~cle~ge~vlk~-----ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-------  337 (504)
T KOG0624|consen  270 VKSLESAEQAIEEKHWTECLEAGEKVLKN-----EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-------  337 (504)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHhc-----CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-------
Confidence                  23334556666666666666551     111 22334455667889999999999999999888743       


Q ss_pred             ChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114          309 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  343 (395)
Q Consensus       309 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  343 (395)
                       |+...++..-+.+|.....++ .|+.-|++|.++
T Consensus       338 -~~dv~~l~dRAeA~l~dE~YD-~AI~dye~A~e~  370 (504)
T KOG0624|consen  338 -PDDVQVLCDRAEAYLGDEMYD-DAIHDYEKALEL  370 (504)
T ss_pred             -chHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHhc
Confidence             666788999999999999999 999999999875

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=8.4e-15  Score=116.76  Aligned_cols=270  Identities=14%  Similarity=0.085  Sum_probs=216.7

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      |.....+..+|.+++..|++++|+..|+++..+        +|..+..+-..|..+...|+++.-...-...+.+.+   
T Consensus       229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~---  297 (564)
T KOG1174|consen  229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK---  297 (564)
T ss_pred             CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh---
Confidence            455667788999999999999999999998765        577888888889999999999988877776666522   


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                           ....-++--+...+...++..|+.+-+++++.        ++....++..-|.++...|+.++|+-.|+.|..+.
T Consensus       298 -----~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La  364 (564)
T KOG1174|consen  298 -----YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA  364 (564)
T ss_pred             -----cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence                 22333445567778889999999999999976        34445678888999999999999999999998764


Q ss_pred             HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHH-HHHH-hhhcHHHHHHH
Q 016114          174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA-ASYS-RSKNFVEAERL  251 (395)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~-~~~~~~~A~~~  251 (395)
                                |....+|..|-.+|...|++.+|....+.++...        +..+.++..+| .++. .-.--++|..+
T Consensus       365 ----------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf  426 (564)
T KOG1174|consen  365 ----------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKF  426 (564)
T ss_pred             ----------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHH
Confidence                      2336788899999999999999999999988765        33445555554 3332 23334789999


Q ss_pred             HHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchh
Q 016114          252 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT  331 (395)
Q Consensus       252 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  331 (395)
                      +++++.+        .|....+...+|.++...|.+..++.++++.+..+     ++.    .....||.++...+.++ 
T Consensus       427 ~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~-----~D~----~LH~~Lgd~~~A~Ne~Q-  488 (564)
T KOG1174|consen  427 AEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF-----PDV----NLHNHLGDIMRAQNEPQ-  488 (564)
T ss_pred             HHhhhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc-----ccc----HHHHHHHHHHHHhhhHH-
Confidence            9999873        67788888999999999999999999999999865     221    34678999999999999 


Q ss_pred             HHHHHHHHHHHH
Q 016114          332 KLLELLKRVLRI  343 (395)
Q Consensus       332 ~A~~~~~~al~~  343 (395)
                      +|.++|..|+.+
T Consensus       489 ~am~~y~~ALr~  500 (564)
T KOG1174|consen  489 KAMEYYYKALRQ  500 (564)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999974

>PLN03077 Protein ECB2; Provisional

Probab=99.72  E-value=1.3e-14  Score=137.02  Aligned_cols=163  Identities=11%  Similarity=0.031  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc
Q 016114          190 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  269 (395)
Q Consensus       190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  269 (395)
                      |+.+...|...|+.++|+.+|++..+.     | -.|+ ..++..+...+.+.|++++|..+|+...+..     +-.|.
T Consensus       557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~-----g-~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi~P~  624 (857)
T PLN03077        557 WNILLTGYVAHGKGSMAVELFNRMVES-----G-VNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKY-----SITPN  624 (857)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHh-----CCCCc
Confidence            344555555555555555555544321     0 0111 1223333344555555555555555544211     11122


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccC
Q 016114          270 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  349 (395)
Q Consensus       270 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  349 (395)
                       ...+..+..++.+.|++++|.+.+++.         +..|+ ..+|..|-..+...|+.+ .+....++.+++      
T Consensus       625 -~~~y~~lv~~l~r~G~~~eA~~~~~~m---------~~~pd-~~~~~aLl~ac~~~~~~e-~~e~~a~~l~~l------  686 (857)
T PLN03077        625 -LKHYACVVDLLGRAGKLTEAYNFINKM---------PITPD-PAVWGALLNACRIHRHVE-LGELAAQHIFEL------  686 (857)
T ss_pred             -hHHHHHHHHHHHhCCCHHHHHHHHHHC---------CCCCC-HHHHHHHHHHHHHcCChH-HHHHHHHHHHhh------
Confidence             234455555555555555555555432         01111 123334444444455554 454444444432      


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHH
Q 016114          350 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  384 (395)
Q Consensus       350 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  384 (395)
                        .|+....+..++.+|...|++++|.+..+...+
T Consensus       687 --~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        687 --DPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             --CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence              233345677888999999999998888776654

>TIGR00540 hemY_coli hemY protein

Probab=99.72  E-value=1.5e-14  Score=124.14  Aligned_cols=282  Identities=11%  Similarity=0.036  Sum_probs=192.1

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      ...+...|.+...+|+++.|..++.++.+..     ++..  ..+....+.++...|++++|...+++.++.        
T Consensus       118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------  182 (409)
T TIGR00540       118 VLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEM--------  182 (409)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence            3445577899999999999999999987642     1111  122334588999999999999999988875        


Q ss_pred             ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114           97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG-MAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      .|....++..++.++...|++++|.+.+.+..+..     ..++... ........-....+..+++...+.++..... 
T Consensus       183 ~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p-  256 (409)
T TIGR00540       183 APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-----LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP-  256 (409)
T ss_pred             CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC-
Confidence            46666788899999999999999999998887651     1223222 1222222222333444444555555554321 


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114          176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  255 (395)
Q Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  255 (395)
                           ...+.....+..++..+...|++++|.+.++++++..     ++++..... ..........++.+.+.+.++++
T Consensus       257 -----~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~  325 (409)
T TIGR00540       257 -----RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQ  325 (409)
T ss_pred             -----HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhH-HHHHhhhcCCCChHHHHHHHHHH
Confidence                 1111124456778999999999999999999998853     122211101 11223334457888888888887


Q ss_pred             HHHHHHhhCCCCcchH--HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHH
Q 016114          256 LDIMTKTVGPDDQSIS--FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL  333 (395)
Q Consensus       256 ~~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  333 (395)
                      ++        .+|+..  ..+..+|.++...|++++|.++|+++....      ..|+... +..+|.++.+.|+.+ +|
T Consensus       326 lk--------~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~------~~p~~~~-~~~La~ll~~~g~~~-~A  389 (409)
T TIGR00540       326 AK--------NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK------EQLDAND-LAMAADAFDQAGDKA-EA  389 (409)
T ss_pred             HH--------hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh------cCCCHHH-HHHHHHHHHHcCCHH-HH
Confidence            76        244445  678899999999999999999999543322      1133222 458999999999999 99


Q ss_pred             HHHHHHHHHHHHh
Q 016114          334 LELLKRVLRIQER  346 (395)
Q Consensus       334 ~~~~~~al~~~~~  346 (395)
                      .+++++++...-.
T Consensus       390 ~~~~~~~l~~~~~  402 (409)
T TIGR00540       390 AAMRQDSLGLMLA  402 (409)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999876543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.71  E-value=1.8e-15  Score=125.60  Aligned_cols=269  Identities=16%  Similarity=0.059  Sum_probs=194.0

Q ss_pred             HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114           64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  143 (395)
Q Consensus        64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  143 (395)
                      ..|..+++.|+..+|.-.|+.++.-        +|..+.+|..||.+....++-..|+..+++++++        +|...
T Consensus       290 ~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~Nl  353 (579)
T KOG1125|consen  290 KEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNL  353 (579)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccH
Confidence            3577888899999999999988764        7888999999999999999999999999999987        67777


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCC-chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114          144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD-DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  222 (395)
Q Consensus       144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  222 (395)
                      .++..||..|...|.-.+|..++.+-+....+....... ......    ...-......+..-.++|-.+..   ....
T Consensus       354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~---~~~~  426 (579)
T KOG1125|consen  354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAAR---QLPT  426 (579)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHH---hCCC
Confidence            889999999999999999999998876642110000000 000000    00000000001111222222221   1111


Q ss_pred             CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114          223 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  302 (395)
Q Consensus       223 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  302 (395)
                         .....+...||.+|...|+|++|+++|+.|+.        ..|.....|..||..+....+.++|+..|.+|+++. 
T Consensus       427 ---~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--------v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-  494 (579)
T KOG1125|consen  427 ---KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--------VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-  494 (579)
T ss_pred             ---CCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--------cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-
Confidence               13345677899999999999999999999998        467888899999999999999999999999999976 


Q ss_pred             HHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHH--HHHHHHHHHHHHHHhcchhhh
Q 016114          303 IAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE--VMLTLKKVVSYLDKLGRKEEK  375 (395)
Q Consensus       303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A  375 (395)
                             |...++.++||..+..+|.+. +|..+|-.|+.+.++........  .-.++..|-.++..+++.+-+
T Consensus       495 -------P~yVR~RyNlgIS~mNlG~yk-EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  495 -------PGYVRVRYNLGISCMNLGAYK-EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             -------CCeeeeehhhhhhhhhhhhHH-HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence                   677788999999999999999 99999999999987733222110  123455555677777777633

>PLN03077 Protein ECB2; Provisional

Probab=99.71  E-value=3.4e-14  Score=134.09  Aligned_cols=165  Identities=15%  Similarity=0.097  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC-
Q 016114          189 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD-  267 (395)
Q Consensus       189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-  267 (395)
                      +++.+...|.+.|++++|.+.|++..+          + ...+|+.+...|...|++++|+.+|++....    ..++. 
T Consensus       426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~----~~pd~~  490 (857)
T PLN03077        426 VANALIEMYSKCKCIDKALEVFHNIPE----------K-DVISWTSIIAGLRLNNRCFEALIFFRQMLLT----LKPNSV  490 (857)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC----CCCCHh
Confidence            345666777777777777777765321          1 1235677778888888888888888776521    00110 


Q ss_pred             ------------------------------------------------------------cchHHHHHHHHHHHHhcCCh
Q 016114          268 ------------------------------------------------------------QSISFPMLHLGITLYHLNRD  287 (395)
Q Consensus       268 ------------------------------------------------------------~~~~~~~~~la~~~~~~g~~  287 (395)
                                                                                  .....+|..+...|...|+.
T Consensus       491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~  570 (857)
T PLN03077        491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKG  570 (857)
T ss_pred             HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCH
Confidence                                                                        11123455666667777777


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q 016114          288 KEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLD  367 (395)
Q Consensus       288 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  367 (395)
                      ++|+++|++..+.-   ..|+    ..++..+-..+.+.|..+ +|..+|+...+.+     ...|+ ...+..+..++.
T Consensus       571 ~~A~~lf~~M~~~g---~~Pd----~~T~~~ll~a~~~~g~v~-ea~~~f~~M~~~~-----gi~P~-~~~y~~lv~~l~  636 (857)
T PLN03077        571 SMAVELFNRMVESG---VNPD----EVTFISLLCACSRSGMVT-QGLEYFHSMEEKY-----SITPN-LKHYACVVDLLG  636 (857)
T ss_pred             HHHHHHHHHHHHcC---CCCC----cccHHHHHHHHhhcChHH-HHHHHHHHHHHHh-----CCCCc-hHHHHHHHHHHH
Confidence            77777777655321   1122    223555666777888888 8888887766332     11232 367788899999


Q ss_pred             HhcchhhhchhhHHH
Q 016114          368 KLGRKEEKFPLKKRL  382 (395)
Q Consensus       368 ~~g~~~~A~~~~~~a  382 (395)
                      +.|++++|.+++++.
T Consensus       637 r~G~~~eA~~~~~~m  651 (857)
T PLN03077        637 RAGKLTEAYNFINKM  651 (857)
T ss_pred             hCCCHHHHHHHHHHC
Confidence            999999999988875

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=3.9e-15  Score=118.59  Aligned_cols=293  Identities=13%  Similarity=0.053  Sum_probs=223.7

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      ....+.-....|..++...+|.+|+..+..|++++        |..+..|.+.+.++...|+|++|....++.+++    
T Consensus        45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~----  112 (486)
T KOG0550|consen   45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC--------PDNASYYSNRAATLMMLGRFEEALGDARQSVRL----  112 (486)
T ss_pred             HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC--------ccchhhhchhHHHHHHHHhHhhcccchhhheec----
Confidence            34456667889999999999999999999999985        333677888999999999999999999888776    


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHH--------HHHHHHhCC--CChhHHHHHHHHHHHHHHCCCHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL--------KIYTKVYGE--NDGRVGMAMCSLAHAKCANGNAEEA  162 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A  162 (395)
                          .+.........+.++...++..+|...++..-        ...+++...  ..|....+...-+.++...|++++|
T Consensus       113 ----kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a  188 (486)
T KOG0550|consen  113 ----KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEA  188 (486)
T ss_pred             ----CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhH
Confidence                44555577777888888888887776665221        111111111  1244555566678899999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC----CCChhHHHHHHHHHHH
Q 016114          163 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----KEHPSFVTHLLNLAAS  238 (395)
Q Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~  238 (395)
                      ...--..+++.          +.-..++...|.++...++.+.|+..|++++.+......    ...+.....+..-|.-
T Consensus       189 ~~ea~~ilkld----------~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~  258 (486)
T KOG0550|consen  189 QSEAIDILKLD----------ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND  258 (486)
T ss_pred             HHHHHHHHhcc----------cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence            88776666642          122445566788999999999999999999986432210    0123445556677888


Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 016114          239 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDC  318 (395)
Q Consensus       239 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  318 (395)
                      ..+.|++.+|.+.|..++.+-.    .+....+..|.+.+.+..+.|+..+|+.-.+.++.+.        +....++..
T Consensus       259 ~fk~G~y~~A~E~Yteal~idP----~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--------~syikall~  326 (486)
T KOG0550|consen  259 AFKNGNYRKAYECYTEALNIDP----SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--------SSYIKALLR  326 (486)
T ss_pred             HhhccchhHHHHHHHHhhcCCc----cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--------HHHHHHHHH
Confidence            8999999999999999998521    1233567789999999999999999999999998864        667888999


Q ss_pred             HHHHHHHcCCchhHHHHHHHHHHHHH
Q 016114          319 LVSIQTRLGEDDTKLLELLKRVLRIQ  344 (395)
Q Consensus       319 l~~~~~~~~~~~~~A~~~~~~al~~~  344 (395)
                      -|.++...++++ +|.+.|+++++.-
T Consensus       327 ra~c~l~le~~e-~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  327 RANCHLALEKWE-EAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHhhc
Confidence            999999999999 9999999999754

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.70  E-value=6.2e-14  Score=119.27  Aligned_cols=298  Identities=15%  Similarity=0.054  Sum_probs=198.3

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   95 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   95 (395)
                      ........+..+...|++++|...++++++..     ++++   .++.. +..+...|++..+.....+++..    ..+
T Consensus        42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----P~~~---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~  108 (355)
T cd05804          42 ERERAHVEALSAWIAGDLPKALALLEQLLDDY-----PRDL---LALKL-HLGAFGLGDFSGMRDHVARVLPL----WAP  108 (355)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcH---HHHHH-hHHHHHhcccccCchhHHHHHhc----cCc
Confidence            34445667888999999999999999998752     2222   23332 55566666665555555555543    234


Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      .+|........+|.++...|++++|+..+++++++        .|.....+..+|.++...|++++|+.++++++.... 
T Consensus       109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~-  179 (355)
T cd05804         109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD-  179 (355)
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC-
Confidence            67777788889999999999999999999999987        233356788899999999999999999999987532 


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHH--HHHHHHHhhhcHHHHHHHHH
Q 016114          176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL--NLAASYSRSKNFVEAERLLR  253 (395)
Q Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--~la~~~~~~~~~~~A~~~~~  253 (395)
                           .++......+..+|.++...|++++|+..+++++...     +..+.......  .+...+...|....+..+ +
T Consensus       180 -----~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~  248 (355)
T cd05804         180 -----CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-E  248 (355)
T ss_pred             -----CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-H
Confidence                 1223334556789999999999999999999985431     11111111101  222223333432222222 2


Q ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHcCCchhH
Q 016114          254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF-GKDSLPVGEALDCLVSIQTRLGEDDTK  332 (395)
Q Consensus       254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~  332 (395)
                      .+........ +. +.....-...+.++...|+.++|...++.......... ..............+.++...|++. +
T Consensus       249 ~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~-~  325 (355)
T cd05804         249 DLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA-T  325 (355)
T ss_pred             HHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH-H
Confidence            2222111110 11 22222334678888999999999999988877665410 0112234455677888999999999 9


Q ss_pred             HHHHHHHHHHHHHhccC
Q 016114          333 LLELLKRVLRIQEREFG  349 (395)
Q Consensus       333 A~~~~~~al~~~~~~~~  349 (395)
                      |.+.+..++.....+-|
T Consensus       326 A~~~L~~al~~a~~~gg  342 (355)
T cd05804         326 ALELLGPVRDDLARIGG  342 (355)
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            99999999998866533

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.70  E-value=1.8e-13  Score=117.00  Aligned_cols=266  Identities=13%  Similarity=0.090  Sum_probs=185.9

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh
Q 016114           21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  100 (395)
Q Consensus        21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  100 (395)
                      ...+......|+++.|..++.++.+..     ++. ... .....+.++...|++++|...+++..+.        .|..
T Consensus       122 llaA~aA~~~g~~~~A~~~l~~A~~~~-----~~~-~~~-~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~  186 (398)
T PRK10747        122 LLAAEAAQQRGDEARANQHLERAAELA-----DND-QLP-VEITRVRIQLARNENHAARHGVDKLLEV--------APRH  186 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcC-----Ccc-hHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCC
Confidence            344666699999999999999997642     111 112 2233488999999999999999998775        5666


Q ss_pred             hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114          101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM-----AMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus       101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      ..++..++.+|...|++++|...+.+..+..     ..++....     ++..+........+-    ..+.+..+...+
T Consensus       187 ~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-----~~~~~~~~~l~~~a~~~l~~~~~~~~~~----~~l~~~w~~lp~  257 (398)
T PRK10747        187 PEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-----VGDEEHRAMLEQQAWIGLMDQAMADQGS----EGLKRWWKNQSR  257 (398)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHhCCH
Confidence            7888899999999999999999998877642     11222111     222222212222222    223332222111


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114          176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  255 (395)
Q Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  255 (395)
                         ..++.   ..+...++..+...|+.++|...++++++.      +.++.....   .+  ....++++++....++.
T Consensus       258 ---~~~~~---~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l---~~--~l~~~~~~~al~~~e~~  320 (398)
T PRK10747        258 ---KTRHQ---VALQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLL---IP--RLKTNNPEQLEKVLRQQ  320 (398)
T ss_pred             ---HHhCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHH---Hh--hccCCChHHHHHHHHHH
Confidence               01222   344577899999999999999999988762      123332222   22  23458999999988887


Q ss_pred             HHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHH
Q 016114          256 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE  335 (395)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~  335 (395)
                      ++        .+|+....+..+|.++...|++++|.++|+++++..        |+. ..+..++.++.+.|+.+ +|..
T Consensus       321 lk--------~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--------P~~-~~~~~La~~~~~~g~~~-~A~~  382 (398)
T PRK10747        321 IK--------QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--------PDA-YDYAWLADALDRLHKPE-EAAA  382 (398)
T ss_pred             Hh--------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCH-HHHHHHHHHHHHcCCHH-HHHH
Confidence            76        467778888999999999999999999999998853        222 23568999999999999 9999


Q ss_pred             HHHHHHHHHH
Q 016114          336 LLKRVLRIQE  345 (395)
Q Consensus       336 ~~~~al~~~~  345 (395)
                      +|++++.+..
T Consensus       383 ~~~~~l~~~~  392 (398)
T PRK10747        383 MRRDGLMLTL  392 (398)
T ss_pred             HHHHHHhhhc
Confidence            9999987653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.68  E-value=2.5e-14  Score=113.88  Aligned_cols=182  Identities=14%  Similarity=0.089  Sum_probs=147.4

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   91 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   91 (395)
                      .++..+..++.+|..+...|++++|+..+++++...     ++++....++..+|.++...|++++|+..++++++.   
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~---   99 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL---   99 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---
Confidence            345567788999999999999999999999998763     455666778899999999999999999999999986   


Q ss_pred             hcCCCChhhhhhHHhHHHHHHHc--------CChHHHHHHHHHHHHHHHHHhCCCChhHHHH--------------HHHH
Q 016114           92 NRGTESADLVLPLFSLGSLFIKE--------GKAVDAESVFSRILKIYTKVYGENDGRVGMA--------------MCSL  149 (395)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~~l  149 (395)
                        .++++....+++.+|.++...        |++++|...+++++...     ++++....+              ...+
T Consensus       100 --~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~  172 (235)
T TIGR03302       100 --HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYV  172 (235)
T ss_pred             --CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence              334556666888999999876        78999999999998763     233322111              2467


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114          150 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  215 (395)
Q Consensus       150 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  215 (395)
                      |.++...|++.+|+..++++++..       ++.+....++..+|.++...|++++|..+++....
T Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       173 ARFYLKRGAYVAAINRFETVVENY-------PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHC-------CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            889999999999999999999853       34455577889999999999999999998876543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.67  E-value=5.7e-14  Score=111.85  Aligned_cols=182  Identities=14%  Similarity=0.024  Sum_probs=146.7

Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      ..+..+..++.+|..+...|++++|...+++++..     .++++....++..+|.++...|++++|+..++++++..  
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--  100 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--  100 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--
Confidence            34566788999999999999999999999999876     34556666788999999999999999999999999853  


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHhhhCCCChhHHH--------------HHH
Q 016114          176 SNYMSLDDSIMENMRIDLAELLHIV--------GRGQEGRELLEECLLITEKYKGKEHPSFVT--------------HLL  233 (395)
Q Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~~~  233 (395)
                           |+++....++..+|.++...        |++++|+..+++++....     +++....              ...
T Consensus       101 -----p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~a~~~~~~~~~~~~~~~~  170 (235)
T TIGR03302       101 -----PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-----NSEYAPDAKKRMDYLRNRLAGKEL  170 (235)
T ss_pred             -----cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-----CChhHHHHHHHHHHHHHHHHHHHH
Confidence                 44454455678889998876        789999999999887532     2222111              123


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114          234 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  299 (395)
Q Consensus       234 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  299 (395)
                      .+|.++...|++.+|+..++++++..     +++|....++..+|.++...|++++|..+++....
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            67889999999999999999998742     44577788999999999999999999998876543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=1.1e-14  Score=116.01  Aligned_cols=290  Identities=13%  Similarity=0.056  Sum_probs=222.9

Q ss_pred             HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114           57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  136 (395)
                      ..+.-....|..++...+|.+|+..+..|+++        .|+.+..|.+.+.+++..|+|++|.-..++.+++      
T Consensus        47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~--------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~------  112 (486)
T KOG0550|consen   47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM--------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRL------  112 (486)
T ss_pred             HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh--------CccchhhhchhHHHHHHHHhHhhcccchhhheec------
Confidence            34555667788899999999999999999997        3555788889999999999999999999888876      


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------HHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHH
Q 016114          137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL--------RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE  208 (395)
Q Consensus       137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~--------~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  208 (395)
                        .+.........+.++...++..+|...++..-        .............|........-+.++...|++++|..
T Consensus       113 --kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~  190 (486)
T KOG0550|consen  113 --KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS  190 (486)
T ss_pred             --CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence              23334466667777777777777776665221        11111111122234444555667889999999999987


Q ss_pred             HHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC---------cchHHHHHHHHH
Q 016114          209 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD---------QSISFPMLHLGI  279 (395)
Q Consensus       209 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~la~  279 (395)
                      .--..+++        ++....++..-|.++...++.+.|+..|++++.+     ++++         +.....+..-|.
T Consensus       191 ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----dpdh~~sk~~~~~~k~le~~k~~gN  257 (486)
T KOG0550|consen  191 EAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----DPDHQKSKSASMMPKKLEVKKERGN  257 (486)
T ss_pred             HHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-----ChhhhhHHhHhhhHHHHHHHHhhhh
Confidence            66555543        3456677778889999999999999999999974     2333         334445566788


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHH
Q 016114          280 TLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTL  359 (395)
Q Consensus       280 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  359 (395)
                      -.++.|++..|.++|..++.+...    +....+..|.+.+.+..++|+.. +|+.-...++.+        ++..+.++
T Consensus       258 ~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~-eaisdc~~Al~i--------D~syikal  324 (486)
T KOG0550|consen  258 DAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLR-EAISDCNEALKI--------DSSYIKAL  324 (486)
T ss_pred             hHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCch-hhhhhhhhhhhc--------CHHHHHHH
Confidence            889999999999999999987522    23445778999999999999999 999999999975        67888999


Q ss_pred             HHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114          360 KKVVSYLDKLGRKEEKFPLKKRLSNLRMK  388 (395)
Q Consensus       360 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~  388 (395)
                      ..-|.++...++|++|.+.|+++.+....
T Consensus       325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  325 LRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999886554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.65  E-value=1.7e-12  Score=109.56  Aligned_cols=324  Identities=14%  Similarity=0.052  Sum_probs=208.5

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   91 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   91 (395)
                      ..|..+.++-..|..+...|+-++|..+.+.++..        ++....+|..+|.++....+|++|+++|+.|+.+   
T Consensus        36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~---  104 (700)
T KOG1156|consen   36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI---  104 (700)
T ss_pred             hCCccchhHHhccchhhcccchHHHHHHHHHHhcc--------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc---
Confidence            45555666667777777888888888777777652        2233456777888888888888888888888876   


Q ss_pred             hcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114           92 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  171 (395)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  171 (395)
                           .++....+..++.+..++++++.....-.+.++.        .|.....|...+..+...|++..|....+....
T Consensus       105 -----~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~  171 (700)
T KOG1156|consen  105 -----EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEYKMALEILEEFEK  171 (700)
T ss_pred             -----CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 4566677778888888888887777666666654        455556788889999999999999998888777


Q ss_pred             HHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHH
Q 016114          172 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  251 (395)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  251 (395)
                      .....  +++.......+......+....|.+++|.+.+..--.-        -.+........+.++...+++++|...
T Consensus       172 t~~~~--~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~  241 (700)
T KOG1156|consen  172 TQNTS--PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--------IVDKLAFEETKADLLMKLGQLEEAVKV  241 (700)
T ss_pred             hhccC--CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--------HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence            65421  22222222333444556666777777776665432111        112223344557777777777777777


Q ss_pred             HHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh-c----------------------------------------------
Q 016114          252 LRICLDIMTKTVGPDDQSISFPMLHLGITLYH-L----------------------------------------------  284 (395)
Q Consensus       252 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~----------------------------------------------  284 (395)
                      +...+..        .|+....+..+-.++.. .                                              
T Consensus       242 y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~  313 (700)
T KOG1156|consen  242 YRRLLER--------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRP  313 (700)
T ss_pred             HHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHH
Confidence            7665541        22222222111111110 0                                              


Q ss_pred             -----------------CChHHHHHHHHHHHHHHHHHcCCC------------Ch-HHHHHHHHHHHHHHHcCCchhHHH
Q 016114          285 -----------------NRDKEAEKLVLEALYIREIAFGKD------------SL-PVGEALDCLVSIQTRLGEDDTKLL  334 (395)
Q Consensus       285 -----------------g~~~~A~~~~~~al~~~~~~~~~~------------~~-~~~~~~~~l~~~~~~~~~~~~~A~  334 (395)
                                       .+..+ ....++.+..+...+++.            .| ....+++.++.-+...|+++ .|.
T Consensus       314 ~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~-~A~  391 (700)
T KOG1156|consen  314 LLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE-VAL  391 (700)
T ss_pred             HhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH-HHH
Confidence                             00110 112233332232222221            12 23455677889999999999 999


Q ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114          335 ELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  387 (395)
Q Consensus       335 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  387 (395)
                      .+...|++        ..|..++.+..-|+++...|+.++|..++.++.++..
T Consensus       392 ~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~  436 (700)
T KOG1156|consen  392 EYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT  436 (700)
T ss_pred             HHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence            99999984        5688899999999999999999999999999987653

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.64  E-value=8.9e-13  Score=111.47  Aligned_cols=324  Identities=14%  Similarity=0.049  Sum_probs=239.2

Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114            9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   88 (395)
Q Consensus         9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   88 (395)
                      ++-...+.-..+..-+..+...+.++-|+..|..+++.+.        ..-..+...+..-...|..++-..++++++..
T Consensus       508 igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp--------~k~slWlra~~~ek~hgt~Esl~Allqkav~~  579 (913)
T KOG0495|consen  508 IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP--------CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ  579 (913)
T ss_pred             hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc--------chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            3445556666777888888888999999999999888752        22334555566666778888888899998876


Q ss_pred             HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016114           89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  168 (395)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  168 (395)
                      +        |.....+...+..+...|+...|...+.++++.        +|..-.++..--.+.....+++.|..+|.+
T Consensus       580 ~--------pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llak  643 (913)
T KOG0495|consen  580 C--------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAK  643 (913)
T ss_pred             C--------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            3        344455666778888889999999999998876        344445566666777888899999999998


Q ss_pred             HHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHH
Q 016114          169 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  248 (395)
Q Consensus       169 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  248 (395)
                      +....       +.    ..++..-+.+...+++.++|+.+++++++.+        |.....+..+|.++..+++.+.|
T Consensus       644 ar~~s-------gT----eRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~~~ie~a  704 (913)
T KOG0495|consen  644 ARSIS-------GT----ERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQMENIEMA  704 (913)
T ss_pred             HhccC-------Cc----chhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHHHHHHHH
Confidence            87632       11    3445666777888899999999999998853        56667888899999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC
Q 016114          249 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE  328 (395)
Q Consensus       249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  328 (395)
                      ...|...+.        .-|.....|..|+.+-...|+...|...++++.-        .+|.....+.....+-.+.|+
T Consensus       705 R~aY~~G~k--------~cP~~ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn  768 (913)
T KOG0495|consen  705 REAYLQGTK--------KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGN  768 (913)
T ss_pred             HHHHHhccc--------cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCC
Confidence            988887765        2456666788888888889999999888888753        224444455556666777888


Q ss_pred             chhHHHHHHHHHHHHHHhc----------c--CCCC----------HHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114          329 DDTKLLELLKRVLRIQERE----------F--GSES----------EEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  386 (395)
Q Consensus       329 ~~~~A~~~~~~al~~~~~~----------~--~~~~----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  386 (395)
                      .+ .|.....+|++-+...          .  +...          .....++..+|.++....++++|..+|.+++.++
T Consensus       769 ~~-~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d  847 (913)
T KOG0495|consen  769 KE-QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD  847 (913)
T ss_pred             HH-HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            88 8888888877643221          0  0000          0113467788999999999999999999999999


Q ss_pred             HHHHhh
Q 016114          387 MKYKQK  392 (395)
Q Consensus       387 ~~~~~~  392 (395)
                      ++++..
T Consensus       848 ~d~GD~  853 (913)
T KOG0495|consen  848 PDNGDA  853 (913)
T ss_pred             CccchH
Confidence            887754

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.63  E-value=4.8e-13  Score=108.61  Aligned_cols=229  Identities=15%  Similarity=0.072  Sum_probs=164.2

Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  179 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  179 (395)
                      .+..+...|..|...+++++|...|.++.....+.  .+....+..+...+.++... ++++|+.+++++++++...   
T Consensus        34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~---  107 (282)
T PF14938_consen   34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA---  107 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc---
Confidence            34566667888999999999999999999998773  33445677788888888776 9999999999999999864   


Q ss_pred             CCCchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114          180 SLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  258 (395)
Q Consensus       180 ~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  258 (395)
                       ..+...+.++..+|.+|... |++++|+++|++|+++++...  .......++..+|.++...|+|++|++.|++....
T Consensus       108 -G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  108 -GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             -T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             -CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence             56677788999999999999 999999999999999988754  33456678889999999999999999999998763


Q ss_pred             HHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHH
Q 016114          259 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK  338 (395)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  338 (395)
                      ..... .........+...+.|+...||+..|...+++.......   -.+..-...+..|-..+.. |+.+     .|.
T Consensus       185 ~l~~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~---F~~s~E~~~~~~l~~A~~~-~D~e-----~f~  254 (282)
T PF14938_consen  185 CLENN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS---FASSREYKFLEDLLEAYEE-GDVE-----AFT  254 (282)
T ss_dssp             CCCHC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT---STTSHHHHHHHHHHHHHHT-T-CC-----CHH
T ss_pred             hhccc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CCCcHHHHHHHHHHHHHHh-CCHH-----HHH
Confidence            21110 011223345567788999999999998888887654311   1123334445555555543 4444     366


Q ss_pred             HHHHHHHhc
Q 016114          339 RVLRIQERE  347 (395)
Q Consensus       339 ~al~~~~~~  347 (395)
                      .++.-+.++
T Consensus       255 ~av~~~d~~  263 (282)
T PF14938_consen  255 EAVAEYDSI  263 (282)
T ss_dssp             HHCHHHTTS
T ss_pred             HHHHHHccc
Confidence            677666654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.61  E-value=5.7e-13  Score=108.20  Aligned_cols=227  Identities=15%  Similarity=0.076  Sum_probs=160.8

Q ss_pred             HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114           57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  136 (395)
                      ..+..+...|..|...|++++|...|.++..+..+..  +....+..+...+.++... ++++|+.++++++.++...  
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--  107 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--  107 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--
Confidence            4566677778999999999999999999999987743  4556677788888887666 9999999999999998774  


Q ss_pred             CCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114          137 ENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  215 (395)
Q Consensus       137 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  215 (395)
                      ......+..+..+|.+|... |++++|+++|++|.+++...    ..+.....++..+|.++...|+|++|++.|++...
T Consensus       108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e----~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE----GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC----CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            23445788999999999999 99999999999999999863    35566678889999999999999999999999876


Q ss_pred             HHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh--cCChHHHHHH
Q 016114          216 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKL  293 (395)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~  293 (395)
                      ...... .........+...+.+++..|++..|...+++......   +-.+..-......|-..+..  ...+++|+.-
T Consensus       184 ~~l~~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~---~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~  259 (282)
T PF14938_consen  184 KCLENN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP---SFASSREYKFLEDLLEAYEEGDVEAFTEAVAE  259 (282)
T ss_dssp             TCCCHC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST---TSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred             Hhhccc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            432211 01223444566778899999999999988887654210   00122223344455554443  2345555555


Q ss_pred             HHH
Q 016114          294 VLE  296 (395)
Q Consensus       294 ~~~  296 (395)
                      |..
T Consensus       260 ~d~  262 (282)
T PF14938_consen  260 YDS  262 (282)
T ss_dssp             HTT
T ss_pred             Hcc
Confidence            443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=7.3e-11  Score=98.97  Aligned_cols=365  Identities=15%  Similarity=0.147  Sum_probs=227.2

Q ss_pred             hhhhhhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH-----------------------HHhcCcChHHH
Q 016114            2 MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL-----------------------ESRYGKTSILL   58 (395)
Q Consensus         2 l~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------------~~~~~~~~~~~   58 (395)
                      +++++..+..-++....++..-|.+++..|+|++|...|+..++-.                       .+.........
T Consensus        95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~s  174 (652)
T KOG2376|consen   95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDS  174 (652)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcch
Confidence            3444455544444444566778999999999999999999874310                       01111111235


Q ss_pred             HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC-------hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114           59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES-------ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  131 (395)
Q Consensus        59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  131 (395)
                      .+.+++.+.++...|+|.+|++.+++++.++++.+..++       .+...+...++.++..+|+..+|...|...+...
T Consensus       175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~  254 (652)
T KOG2376|consen  175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN  254 (652)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence            677889999999999999999999999998877654322       1234567789999999999999999999887652


Q ss_pred             HHHhCCCChhHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHH
Q 016114          132 TKVYGENDGRVGMAMCSLAHAKCANGNAEE-AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL  210 (395)
Q Consensus       132 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  210 (395)
                          ..+.|..+.+-+||-.+-....-++. ++..++.-...........-.......++.|.+.+.+..+..+.+.+..
T Consensus       255 ----~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~  330 (652)
T KOG2376|consen  255 ----PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS  330 (652)
T ss_pred             ----CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence                34566677777777655433332221 1111111110000000000011222344566666666666655554433


Q ss_pred             HHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcch-HHHHHHHHHHHHhcCChHH
Q 016114          211 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI-SFPMLHLGITLYHLNRDKE  289 (395)
Q Consensus       211 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~  289 (395)
                      ..       . ....|..................+.+|.+++...-+        .+|.. ..+...++.+...+|+++.
T Consensus       331 a~-------l-p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--------~~p~~s~~v~L~~aQl~is~gn~~~  394 (652)
T KOG2376|consen  331 AS-------L-PGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--------GHPEKSKVVLLLRAQLKISQGNPEV  394 (652)
T ss_pred             Hh-------C-CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--------cCCchhHHHHHHHHHHHHhcCCHHH
Confidence            22       1 123333332222333333333467777777766544        34443 5567788999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCC--CChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q 016114          290 AEKLVLEALYIREIAFGK--DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLD  367 (395)
Q Consensus       290 A~~~~~~al~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  367 (395)
                      |++.+...+......+..  ..|.   +-..+-..+.+.++.. .|...+.+|+..++.... ..+.....+..++.+-.
T Consensus       395 A~~il~~~~~~~~ss~~~~~~~P~---~V~aiv~l~~~~~~~~-~a~~vl~~Ai~~~~~~~t-~s~~l~~~~~~aa~f~l  469 (652)
T KOG2376|consen  395 ALEILSLFLESWKSSILEAKHLPG---TVGAIVALYYKIKDND-SASAVLDSAIKWWRKQQT-GSIALLSLMREAAEFKL  469 (652)
T ss_pred             HHHHHHHHhhhhhhhhhhhccChh---HHHHHHHHHHhccCCc-cHHHHHHHHHHHHHHhcc-cchHHHhHHHHHhHHHH
Confidence            999998555333222211  1232   2334555677777777 899999999998877543 33566667778888888


Q ss_pred             HhcchhhhchhhHHHHHHHHHHHh
Q 016114          368 KLGRKEEKFPLKKRLSNLRMKYKQ  391 (395)
Q Consensus       368 ~~g~~~~A~~~~~~a~~~~~~~~~  391 (395)
                      +.|+-++|..++++.+...+...+
T Consensus       470 r~G~~~ea~s~leel~k~n~~d~~  493 (652)
T KOG2376|consen  470 RHGNEEEASSLLEELVKFNPNDTD  493 (652)
T ss_pred             hcCchHHHHHHHHHHHHhCCchHH
Confidence            889999999999999986655433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.59  E-value=2.6e-12  Score=110.63  Aligned_cols=289  Identities=17%  Similarity=0.163  Sum_probs=212.1

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   97 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   97 (395)
                      .+.+.++..|..+++.+.|..+.++++++..       .+.+.++..++.++...+++.+|+.....+++-+...     
T Consensus       479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-------~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N-----  546 (799)
T KOG4162|consen  479 LVIFYLALQYAEQRQLTSALDYAREALALNR-------GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN-----  546 (799)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh-----
Confidence            6678899999999999999999999998732       1345678889999999999999999999888864331     


Q ss_pred             hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114           98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  176 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  176 (395)
                         ......-..+-...++.++|+..+...+.+.+...+-... +.......-+.+....++..+|+....++.......
T Consensus       547 ---~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~  623 (799)
T KOG4162|consen  547 ---HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ  623 (799)
T ss_pred             ---hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence               1222222333444788899999998888887743211000 011222333444445567777777777766654421


Q ss_pred             c--------------cCCCCc--hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH
Q 016114          177 N--------------YMSLDD--SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  240 (395)
Q Consensus       177 ~--------------~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  240 (395)
                      .              ..++++  ......+...+..+...+..++|..++.++-.+        .+.....++..|.++.
T Consensus       624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~~~~G~~~~  695 (799)
T KOG4162|consen  624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSASVYYLRGLLLE  695 (799)
T ss_pred             hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHHHHHHhhHHHH
Confidence            0              011221  223445567788889999999999999988775        3667788999999999


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHH--HHHHHHHHHHHHcCCCChHHHHHHHH
Q 016114          241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK--LVLEALYIREIAFGKDSLPVGEALDC  318 (395)
Q Consensus       241 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~~~~~~~~~  318 (395)
                      .+|++.+|.+.|..++.+        +|+...+...+|.++...|+..-|..  ++..++++.        |....+|+.
T Consensus       696 ~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--------p~n~eaW~~  759 (799)
T KOG4162|consen  696 VKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--------PLNHEAWYY  759 (799)
T ss_pred             HHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--------CCCHHHHHH
Confidence            999999999999999884        46666778899999999999888877  888888753        445568999


Q ss_pred             HHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114          319 LVSIQTRLGEDDTKLLELLKRVLRIQER  346 (395)
Q Consensus       319 l~~~~~~~~~~~~~A~~~~~~al~~~~~  346 (395)
                      +|.++.+.|+.+ +|.++|+-++++-..
T Consensus       760 LG~v~k~~Gd~~-~Aaecf~aa~qLe~S  786 (799)
T KOG4162|consen  760 LGEVFKKLGDSK-QAAECFQAALQLEES  786 (799)
T ss_pred             HHHHHHHccchH-HHHHHHHHHHhhccC
Confidence            999999999999 999999999987544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.55  E-value=3.5e-12  Score=107.99  Aligned_cols=317  Identities=14%  Similarity=0.063  Sum_probs=222.6

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      |..-.++...+..-..-|..++-..++++++..+++        .-..+...+..+...|+...|..++.++.+.     
T Consensus       547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk--------ae~lwlM~ake~w~agdv~~ar~il~~af~~-----  613 (913)
T KOG0495|consen  547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK--------AEILWLMYAKEKWKAGDVPAARVILDQAFEA-----  613 (913)
T ss_pred             cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc--------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHh-----
Confidence            444455666666666777888888888888876432        1223445567777788888888888888775     


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                         +|..-..+..-..+.....+++.|..+|.++...         ..+..++..-+.+...+++.++|+.+++++++.+
T Consensus       614 ---~pnseeiwlaavKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f  681 (913)
T KOG0495|consen  614 ---NPNSEEIWLAAVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF  681 (913)
T ss_pred             ---CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC
Confidence               3445555666666777788888888888887653         2233556666777778888888888888888854


Q ss_pred             HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114          174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  253 (395)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  253 (395)
                                +.....+..+|.++..+++.+.|...|...+..        -|.....|..|+.+-...|+...|...++
T Consensus       682 ----------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--------cP~~ipLWllLakleEk~~~~~rAR~ild  743 (913)
T KOG0495|consen  682 ----------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--------CPNSIPLWLLLAKLEEKDGQLVRARSILD  743 (913)
T ss_pred             ----------CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--------CCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence                      223456678888888888888888888776654        24555667788888888888888888888


Q ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--------HcCCCCh--------------H
Q 016114          254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI--------AFGKDSL--------------P  311 (395)
Q Consensus       254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~--------------~  311 (395)
                      ++.-        .+|.....|......-.+.|+.+.|.....+|++-+..        +.-..+|              .
T Consensus       744 rarl--------kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~  815 (913)
T KOG0495|consen  744 RARL--------KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH  815 (913)
T ss_pred             HHHh--------cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccC
Confidence            8764        45666667777777777888888888888887764311        0000000              0


Q ss_pred             HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          312 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       312 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                      ...++..+|.++....+++ +|.+.|.+++.+        .|+..+++..+-..+...|.-++-.+.+.+...-.+.++
T Consensus       816 dphVllaia~lfw~e~k~~-kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG  885 (913)
T KOG0495|consen  816 DPHVLLAIAKLFWSEKKIE-KAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG  885 (913)
T ss_pred             CchhHHHHHHHHHHHHHHH-HHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence            1234667888888888898 999999999964        455567777777788888877777777777665544443

>PLN02789 farnesyltranstransferase

Probab=99.54  E-value=2e-11  Score=99.65  Aligned_cols=221  Identities=13%  Similarity=0.034  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC-chhHHHHHHHHHHHHHHHh
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELN   92 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~   92 (395)
                      ++...++..+-.++...+.+++|+..+.+++.+        .|....++...+.++...| ++++++..+.+++..    
T Consensus        34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~----  101 (320)
T PLN02789         34 PEFREAMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED----  101 (320)
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH----
Confidence            456666666667788889999999999999986        3566678889999999998 679999999999875    


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCCh--HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  170 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  170 (395)
                          +|....++...+.++...|+.  ++++.++.++++.        +|....++...+.++...|++++|+.++.+++
T Consensus       102 ----npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I  169 (320)
T PLN02789        102 ----NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLL  169 (320)
T ss_pred             ----CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence                566677899999999888874  6778888888875        56777899999999999999999999999999


Q ss_pred             HHHHhcccCCCCchHHHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh--
Q 016114          171 RVIKDSNYMSLDDSIMENMRIDLAELLHIV---GRG----QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--  241 (395)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--  241 (395)
                      +...       .+   ..+++..+.+....   |.+    ++++.+..+++.+        .|....+++.++.++..  
T Consensus       170 ~~d~-------~N---~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~  231 (320)
T PLN02789        170 EEDV-------RN---NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDK  231 (320)
T ss_pred             HHCC-------Cc---hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCC
Confidence            8632       22   34567777776665   333    4677777777775        35556678888888877  


Q ss_pred             --hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhc
Q 016114          242 --SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL  284 (395)
Q Consensus       242 --~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  284 (395)
                        .++..+|.+.+.+++.        ..+....++..|+.+|...
T Consensus       232 ~~l~~~~~~~~~~~~~~~--------~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        232 EALVSDPEVSSVCLEVLS--------KDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             cccccchhHHHHHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence              3455668777777655        2455667888889888763

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.53  E-value=6.7e-11  Score=102.34  Aligned_cols=317  Identities=16%  Similarity=0.105  Sum_probs=197.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      .+++.....++...|++++|+.++.+....        -.+....+-..|.++..+|++++|...|...+..        
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--------   67 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--------   67 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence            455666778889999999999999775442        2345667788999999999999999999998886        


Q ss_pred             ChhhhhhHHhHHHHHHHcC-----ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHH-HHHHHHHHH
Q 016114           97 SADLVLPLFSLGSLFIKEG-----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE-AVELYKKAL  170 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~  170 (395)
                      .|+....+..+..+.....     +.+.-..+|++....+.+.   ..|.      .+...+..-..+.. +..++...+
T Consensus        68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s---~~~~------rl~L~~~~g~~F~~~~~~yl~~~l  138 (517)
T PF12569_consen   68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRS---DAPR------RLPLDFLEGDEFKERLDEYLRPQL  138 (517)
T ss_pred             CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccc---cchh------HhhcccCCHHHHHHHHHHHHHHHH
Confidence            5666666766666663333     2344445555443332111   0111      11111111112222 223333332


Q ss_pred             HHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC--------CCCh-hHHHHHHHHHHHHHh
Q 016114          171 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG--------KEHP-SFVTHLLNLAASYSR  241 (395)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~-~~~~~~~~la~~~~~  241 (395)
                      .   +     .-|    ....++-.+|....+..-...++.......+....        ...| ...++++.+|..|..
T Consensus       139 ~---K-----gvP----slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~  206 (517)
T PF12569_consen  139 R---K-----GVP----SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY  206 (517)
T ss_pred             h---c-----CCc----hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence            2   1     111    22244545554333222222222222221111100        1123 346788999999999


Q ss_pred             hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 016114          242 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS  321 (395)
Q Consensus       242 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  321 (395)
                      .|++++|+++.+++++        ..|.....+...|.++.+.|++.+|...++.|..+..        ..-..-...+.
T Consensus       207 ~g~~~~Al~~Id~aI~--------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~--------~DRyiNsK~aK  270 (517)
T PF12569_consen  207 LGDYEKALEYIDKAIE--------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL--------ADRYINSKCAK  270 (517)
T ss_pred             hCCHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh--------hhHHHHHHHHH
Confidence            9999999999999998        4688899999999999999999999999999876431        11122345677


Q ss_pred             HHHHcCCchhHHHHHHHHHHHHHHhccC-C-CC---HHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHh
Q 016114          322 IQTRLGEDDTKLLELLKRVLRIQEREFG-S-ES---EEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  391 (395)
Q Consensus       322 ~~~~~~~~~~~A~~~~~~al~~~~~~~~-~-~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  391 (395)
                      .+.+.|+.+ +|...+..-    .+.-. + .+   ..........|.+|.+.|++..|+..|..+..+...+.+
T Consensus       271 y~LRa~~~e-~A~~~~~~F----tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~  340 (517)
T PF12569_consen  271 YLLRAGRIE-EAEKTASLF----TREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE  340 (517)
T ss_pred             HHHHCCCHH-HHHHHHHhh----cCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence            788899988 887665443    22111 1 11   112334456799999999999999999999988877643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.51  E-value=6e-12  Score=111.36  Aligned_cols=330  Identities=12%  Similarity=0.077  Sum_probs=203.2

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc--------------------------CcChH--HHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY--------------------------GKTSI--LLVTSLL   63 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------~~~~~--~~~~~~~   63 (395)
                      -+|..+.++..||.+|...-+...|..+|++|.++-....                          +...+  .....+.
T Consensus       487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~  566 (1238)
T KOG1127|consen  487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV  566 (1238)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence            4567788889999999999999999999999987521100                          00000  1112233


Q ss_pred             HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114           64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  143 (395)
Q Consensus        64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  143 (395)
                      ..|..|...+++..|+..|+.++..        +|....++..+|.+|...|++..|.+.|.++..+        +|...
T Consensus       567 ~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--------rP~s~  630 (1238)
T KOG1127|consen  567 QRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--------RPLSK  630 (1238)
T ss_pred             hccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--------CcHhH
Confidence            3555566667777777777777664        6777788999999999999999999999999876        46555


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114          144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  223 (395)
Q Consensus       144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  223 (395)
                      ...+..+.+....|+|.+|+..+...+......   .+-....+.++..++..+...|-..+|..+++++++.+.-....
T Consensus       631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e---~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h  707 (1238)
T KOG1127|consen  631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLE---RTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH  707 (1238)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            677788889999999999999998887765432   12223345566677777777787778888887776654322110


Q ss_pred             C------------------------Ch--------------------------------------hHHHHHHHHHHHHHh
Q 016114          224 E------------------------HP--------------------------------------SFVTHLLNLAASYSR  241 (395)
Q Consensus       224 ~------------------------~~--------------------------------------~~~~~~~~la~~~~~  241 (395)
                      .                        -|                                      .....|+++|.-|.+
T Consensus       708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr  787 (1238)
T KOG1127|consen  708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR  787 (1238)
T ss_pred             hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence            0                        00                                      001223344443333


Q ss_pred             --------hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHH
Q 016114          242 --------SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG  313 (395)
Q Consensus       242 --------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  313 (395)
                              +.+...|+.++.+++.+..        .....+..||.+ ...|++.-|..+|-+++...        |...
T Consensus       788 ~f~~l~et~~~~~~Ai~c~KkaV~L~a--------nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se--------p~~~  850 (1238)
T KOG1127|consen  788 YFLLLGETMKDACTAIRCCKKAVSLCA--------NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE--------PTCH  850 (1238)
T ss_pred             HHHHcCCcchhHHHHHHHHHHHHHHhh--------ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc--------ccch
Confidence                    1122345555555544321        122334444443 33455555555555544322        3333


Q ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114          314 EALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  386 (395)
Q Consensus       314 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  386 (395)
                      ..+.++|.++....+++ .|...|.++..+        .|.....+...+.+....|+.-++..+|...-++.
T Consensus       851 ~~W~NlgvL~l~n~d~E-~A~~af~~~qSL--------dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~  914 (1238)
T KOG1127|consen  851 CQWLNLGVLVLENQDFE-HAEPAFSSVQSL--------DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELC  914 (1238)
T ss_pred             hheeccceeEEecccHH-HhhHHHHhhhhc--------CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhh
Confidence            45666666666666666 666666655532        45555666666666677777777777766644443

>PLN02789 farnesyltranstransferase

Probab=99.50  E-value=9e-11  Score=95.88  Aligned_cols=212  Identities=13%  Similarity=-0.008  Sum_probs=160.9

Q ss_pred             HHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcC-ChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114           65 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKIYTKVYGENDGRVG  143 (395)
Q Consensus        65 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~  143 (395)
                      +-.++...+.+++|+..+.+++.+        .|....++...+.++...| ++++++..+.+++..        +|...
T Consensus        43 ~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npkny  106 (320)
T PLN02789         43 FRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNY  106 (320)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcch
Confidence            334445667889999999999987        6777889999999999998 679999999999876        56666


Q ss_pred             HHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Q 016114          144 MAMCSLAHAKCANGNA--EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  221 (395)
Q Consensus       144 ~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  221 (395)
                      .++...+.++...|+.  ++++.+++++++...       .   -..++...+.++...|+++++++++.++++.     
T Consensus       107 qaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-------k---Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-----  171 (320)
T PLN02789        107 QIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-------K---NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-----  171 (320)
T ss_pred             HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-------c---cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----
Confidence            7788899898888874  678888888887532       2   2557788999999999999999999999985     


Q ss_pred             CCCChhHHHHHHHHHHHHHhh---hcH----HHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh----cCChHHH
Q 016114          222 GKEHPSFVTHLLNLAASYSRS---KNF----VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEA  290 (395)
Q Consensus       222 ~~~~~~~~~~~~~la~~~~~~---~~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A  290 (395)
                         ++....+++..+.+....   |.+    ++++.+..+++.+        .|....++..++.++..    .++..+|
T Consensus       172 ---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~  240 (320)
T PLN02789        172 ---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEV  240 (320)
T ss_pred             ---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhH
Confidence               345566788888777665   223    4677777777763        46667788888888887    3455667


Q ss_pred             HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc
Q 016114          291 EKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL  326 (395)
Q Consensus       291 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~  326 (395)
                      ...+.+++.        ..+....++..|+.++...
T Consensus       241 ~~~~~~~~~--------~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        241 SSVCLEVLS--------KDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHHHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence            777777654        2244445778888888753

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.47  E-value=1.2e-09  Score=92.90  Aligned_cols=319  Identities=11%  Similarity=0.081  Sum_probs=211.1

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   91 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   91 (395)
                      +++....+|..+|.++....+|++|+.+|+.|+.+        .++....+..++....++++++-....-.+.++.   
T Consensus        70 ~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql---  138 (700)
T KOG1156|consen   70 NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL---  138 (700)
T ss_pred             cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh---
Confidence            45556677889999999999999999999999986        2455677889999999999999888877777765   


Q ss_pred             hcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114           92 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  171 (395)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  171 (395)
                           .|.....|...+..+...|++..|....+...........+..............+....|.+++|.+.+..--.
T Consensus       139 -----~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~  213 (700)
T KOG1156|consen  139 -----RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK  213 (700)
T ss_pred             -----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence                 456667888899999999999999999888776654221111222334455556677788887777766654322


Q ss_pred             HHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH-----------
Q 016114          172 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS-----------  240 (395)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----------  240 (395)
                      -.          ..-.......+.++...+++++|...+...+...        |+....+..+-.++.           
T Consensus       214 ~i----------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--------Pdn~~Yy~~l~~~lgk~~d~~~~lk~  275 (700)
T KOG1156|consen  214 QI----------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--------PDNLDYYEGLEKALGKIKDMLEALKA  275 (700)
T ss_pred             HH----------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--------chhHHHHHHHHHHHHHHhhhHHHHHH
Confidence            11          1112333567888889999999998888766542        222211111111110           


Q ss_pred             ---hh--------------------hcHHHH-----------------------------HHHHHHHHHHHHHhhCCC--
Q 016114          241 ---RS--------------------KNFVEA-----------------------------ERLLRICLDIMTKTVGPD--  266 (395)
Q Consensus       241 ---~~--------------------~~~~~A-----------------------------~~~~~~a~~~~~~~~~~~--  266 (395)
                         ..                    .++.+.                             ..++++.+..+....++.  
T Consensus       276 ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~  355 (700)
T KOG1156|consen  276 LYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGM  355 (700)
T ss_pred             HHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccC
Confidence               00                    000000                             012222222222222211  


Q ss_pred             ----------Cc-chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHH
Q 016114          267 ----------DQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE  335 (395)
Q Consensus       267 ----------~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~  335 (395)
                                .| ...++++.++.-+...|+++.|..+...|+.        ..|...+.+..-|+++...|+.+ +|..
T Consensus       356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~-eAa~  426 (700)
T KOG1156|consen  356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLD-EAAA  426 (700)
T ss_pred             CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChH-HHHH
Confidence                      12 3456778899999999999999999999885        45778888888999999999999 9999


Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHH
Q 016114          336 LLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR  381 (395)
Q Consensus       336 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  381 (395)
                      .+.++.++       +.++.. +-..-|....+.++.++|.....+
T Consensus       427 ~l~ea~el-------D~aDR~-INsKcAKYmLrAn~i~eA~~~~sk  464 (700)
T KOG1156|consen  427 WLDEAQEL-------DTADRA-INSKCAKYMLRANEIEEAEEVLSK  464 (700)
T ss_pred             HHHHHHhc-------cchhHH-HHHHHHHHHHHccccHHHHHHHHH
Confidence            99988764       333322 122445666666777777665443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.47  E-value=2e-10  Score=102.00  Aligned_cols=235  Identities=12%  Similarity=0.103  Sum_probs=184.5

Q ss_pred             hCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 016114           72 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  151 (395)
Q Consensus        72 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  151 (395)
                      ..+...|...|-+++.+        ++..+.++..||.+|....+...|..+|.+|.++        ++..+.+....+.
T Consensus       471 rK~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~ad  534 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASAD  534 (1238)
T ss_pred             hhhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHH
Confidence            34567788888888776        6778889999999999999999999999999987        5566677888999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHH
Q 016114          152 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  231 (395)
Q Consensus       152 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  231 (395)
                      .|.+..+++.|....-.+-+...        .......+..+|..|...++..+|+..++.++..        +|....+
T Consensus       535 tyae~~~we~a~~I~l~~~qka~--------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~  598 (1238)
T KOG1127|consen  535 TYAEESTWEEAFEICLRAAQKAP--------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNL  598 (1238)
T ss_pred             HhhccccHHHHHHHHHHHhhhch--------HHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHH
Confidence            99999999999988544433221        1112233455888999999999999999999874        5777889


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 016114          232 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP  311 (395)
Q Consensus       232 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  311 (395)
                      +..+|.+|...|++..|++.|.++..+        .|......+..+.+....|.+.+|+..+...+.....-. +....
T Consensus       599 W~gLGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~g  669 (1238)
T KOG1127|consen  599 WLGLGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNG  669 (1238)
T ss_pred             HHHHHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-Hhhhh
Confidence            999999999999999999999998773        466666777889999999999999999998877654321 22234


Q ss_pred             HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhcc
Q 016114          312 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF  348 (395)
Q Consensus       312 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~  348 (395)
                      .+.++..++..+...|=.. +|.++++++++.+.-.+
T Consensus       670 LaE~~ir~akd~~~~gf~~-kavd~~eksie~f~~~l  705 (1238)
T KOG1127|consen  670 LAESVIRDAKDSAITGFQK-KAVDFFEKSIESFIVSL  705 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Confidence            5667777777777777666 89999999988765543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.47  E-value=2.6e-11  Score=108.85  Aligned_cols=170  Identities=11%  Similarity=0.053  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      ..++..+-.+....+....+...+-+++...+.     .+....++..||.+....|.+++|+..++.++++        
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------  115 (694)
T PRK15179         49 RELLQQARQVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------  115 (694)
T ss_pred             HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------
Confidence            344444445555555555555555555555443     3455788999999999999999999999999997        


Q ss_pred             ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114           97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  176 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  176 (395)
                      .|+...+..+++.++.+.+++++|+..+++++..        .|+.+..++.+|.++...|++++|+..|++++.-    
T Consensus       116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~----  183 (694)
T PRK15179        116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ----  183 (694)
T ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence            6888899999999999999999999999999976        5777789999999999999999999999999871    


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114          177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  217 (395)
Q Consensus       177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  217 (395)
                         +++.   ..++.++|.++...|+.++|...|+++++..
T Consensus       184 ---~p~~---~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        184 ---HPEF---ENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             ---CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence               2333   4566889999999999999999999999874

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.46  E-value=1.3e-12  Score=83.86  Aligned_cols=77  Identities=18%  Similarity=0.412  Sum_probs=70.5

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   90 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   90 (395)
                      ||..+.++..+|.+|...|++++|+.+|++++++ .+..+++++..+.++.++|.++...|++++|+.++++++++.+
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            6899999999999999999999999999999999 5566778888999999999999999999999999999999875

...

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.46  E-value=3.8e-09  Score=84.79  Aligned_cols=303  Identities=15%  Similarity=0.091  Sum_probs=191.6

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      ...-|..-+..|+|.+|.....++-+.        .+....++..-+..-..+|+++.+-.++.++-+..       ..+
T Consensus        87 ~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-------~~~  151 (400)
T COG3071          87 ALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-------GDD  151 (400)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-------CCc
Confidence            344555666778888888877775432        22233445556777888899999998888876641       223


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  179 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  179 (395)
                      ...+....+.+....|+++.|..-..++++.        .|....++.....+|...|++.+...++.+..+.-      
T Consensus       152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~------  217 (400)
T COG3071         152 TLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG------  217 (400)
T ss_pred             hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc------
Confidence            4456667788888999999999888888876        33334556667788999999988888777655421      


Q ss_pred             CCCchHHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          180 SLDDSIMENMRIDLAE--LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       180 ~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                      --+++.... +-+.+.  ++...++-..+..+...--.+-++.  ..+|.   ....++.-+...|+.++|.+..+++++
T Consensus       218 ~l~~~e~~~-le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~---l~~~~a~~li~l~~~~~A~~~i~~~Lk  291 (400)
T COG3071         218 LLSDEEAAR-LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPE---LVVAYAERLIRLGDHDEAQEIIEDALK  291 (400)
T ss_pred             CCChHHHHH-HHHHHHHHHHHHHhccccchHHHHHHHhccHHh--hcChh---HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            112222211 122221  1222233233332111100111111  12333   334567778899999999999999887


Q ss_pred             HHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114          258 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  337 (395)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  337 (395)
                      .      ..++.    +..+. -...-++...=++..++.+...     ++.|   ..+..||.++.+.+.+. +|..+|
T Consensus       292 ~------~~D~~----L~~~~-~~l~~~d~~~l~k~~e~~l~~h-----~~~p---~L~~tLG~L~~k~~~w~-kA~~~l  351 (400)
T COG3071         292 R------QWDPR----LCRLI-PRLRPGDPEPLIKAAEKWLKQH-----PEDP---LLLSTLGRLALKNKLWG-KASEAL  351 (400)
T ss_pred             h------ccChh----HHHHH-hhcCCCCchHHHHHHHHHHHhC-----CCCh---hHHHHHHHHHHHhhHHH-HHHHHH
Confidence            2      12222    11111 1234566666666666665532     3444   56888999999999999 999999


Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114          338 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  386 (395)
Q Consensus       338 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  386 (395)
                      +.+++...     .    ...+..+|.++.+.|+..+|.+.++.++.+.
T Consensus       352 eaAl~~~~-----s----~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~  391 (400)
T COG3071         352 EAALKLRP-----S----ASDYAELADALDQLGEPEEAEQVRREALLLT  391 (400)
T ss_pred             HHHHhcCC-----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            98886422     1    4567889999999999999999999998554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.46  E-value=2.4e-10  Score=90.14  Aligned_cols=135  Identities=18%  Similarity=0.170  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHH---------
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT---------   87 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------   87 (395)
                      ..+-..+|.+++..|+|++|...|.-+.+-      .+  ...+...+++.+++..|.|.+|...-.++-+         
T Consensus        57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlf  128 (557)
T KOG3785|consen   57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DD--APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLF  128 (557)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CC--CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence            345567999999999999999999876541      11  1245577899999999999999887665421         


Q ss_pred             -HHHHhcC--------CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC
Q 016114           88 -ILELNRG--------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN  158 (395)
Q Consensus        88 -~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  158 (395)
                       +..+...        ..-.+..+-...|+.+.+..-.|++|++.|.+.+.        ++|.....-..+|.+|.++.-
T Consensus       129 hlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDY  200 (557)
T KOG3785|consen  129 HLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDY  200 (557)
T ss_pred             HHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcch
Confidence             1111100        00011222334566666666677777777777664        456665666677888888877


Q ss_pred             HHHHHHHHH
Q 016114          159 AEEAVELYK  167 (395)
Q Consensus       159 ~~~A~~~~~  167 (395)
                      |+-+.+.+.
T Consensus       201 ydvsqevl~  209 (557)
T KOG3785|consen  201 YDVSQEVLK  209 (557)
T ss_pred             hhhHHHHHH
Confidence            776665554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.43  E-value=1.1e-12  Score=84.23  Aligned_cols=78  Identities=22%  Similarity=0.335  Sum_probs=71.6

Q ss_pred             ChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114          309 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  388 (395)
Q Consensus       309 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  388 (395)
                      ||.++.++.++|.++...|+++ +|+++|++++++ .+..++.+|..+.++.++|.++..+|++++|+.++++++++.++
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~-~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYD-EALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HH-HHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            6888999999999999999999 999999999999 66678888899999999999999999999999999999999874

...

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.42  E-value=1.1e-10  Score=104.81  Aligned_cols=133  Identities=12%  Similarity=0.084  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC
Q 016114          187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  266 (395)
Q Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  266 (395)
                      ..++.+||.+....|++++|+.+++.++++        .|+...+..+++.++.+.+++++|...+++++.        .
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--------~  149 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--------G  149 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--------c
Confidence            556678888888888888888888888875        466677788888888888888888888888876        3


Q ss_pred             CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 016114          267 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ  344 (395)
Q Consensus       267 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~  344 (395)
                      .|+....+..+|.++...|++++|..+|++++.        .+|+...++..+|.++...|+.+ +|...|+++++..
T Consensus       150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~-~A~~~~~~a~~~~  218 (694)
T PRK15179        150 GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALW-RARDVLQAGLDAI  218 (694)
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhh
Confidence            577777888888888888888888888888876        22444557788888888888888 8888888888764

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=1.9e-10  Score=90.72  Aligned_cols=159  Identities=16%  Similarity=0.160  Sum_probs=105.6

Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHh
Q 016114           27 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS  106 (395)
Q Consensus        27 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  106 (395)
                      +....+|..|+.+++-.+..-+       ..--..-..+|.|++..|+|++|...|.-+..-        +...+....+
T Consensus        32 fls~rDytGAislLefk~~~~~-------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--------~~~~~el~vn   96 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDR-------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--------DDAPAELGVN   96 (557)
T ss_pred             HHhcccchhHHHHHHHhhccch-------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--------CCCCcccchh
Confidence            4567789999998887664422       222345567899999999999999999876541        2223466778


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHH----------HHHHHhCC---------CChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 016114          107 LGSLFIKEGKAVDAESVFSRILK----------IYTKVYGE---------NDGRVGMAMCSLAHAKCANGNAEEAVELYK  167 (395)
Q Consensus       107 l~~~~~~~g~~~~A~~~~~~al~----------~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  167 (395)
                      |+.+++..|.|.+|...-.++-+          +..+. +.         +-.++..-...+|.+.+..-.|.+|++.|.
T Consensus        97 LAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl-ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYk  175 (557)
T KOG3785|consen   97 LACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL-NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYK  175 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh-CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887766521          11111 10         011222334566777777788889999888


Q ss_pred             HHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 016114          168 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  211 (395)
Q Consensus       168 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  211 (395)
                      +.+.          +++........+|.+|.+..-++-+.+.+.
T Consensus       176 rvL~----------dn~ey~alNVy~ALCyyKlDYydvsqevl~  209 (557)
T KOG3785|consen  176 RVLQ----------DNPEYIALNVYMALCYYKLDYYDVSQEVLK  209 (557)
T ss_pred             HHHh----------cChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence            8775          333444455667888888777666555443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=8.4e-09  Score=79.71  Aligned_cols=333  Identities=14%  Similarity=0.059  Sum_probs=189.7

Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114            9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   88 (395)
Q Consensus         9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   88 (395)
                      .++..|.....+..+|.||+...+|..|..+|++.-..        .|.........+..+++.+.+.+|+.......+ 
T Consensus        36 ~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D-  106 (459)
T KOG4340|consen   36 ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLD-  106 (459)
T ss_pred             HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC-
Confidence            34455655566777888888888888888888776443        345555555567777777777777766544322 


Q ss_pred             HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016114           89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  168 (395)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  168 (395)
                             ++.....+...-+.+....+++..+..+.++.          .....+....+.|.+.++.|+++.|++-|+.
T Consensus       107 -------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----------p~en~Ad~~in~gCllykegqyEaAvqkFqa  169 (459)
T KOG4340|consen  107 -------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----------PSENEADGQINLGCLLYKEGQYEAAVQKFQA  169 (459)
T ss_pred             -------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc----------cCCCccchhccchheeeccccHHHHHHHHHH
Confidence                   11122233334455555666666665544432          1123456678888889999999999999999


Q ss_pred             HHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC----------CC-----C------hh
Q 016114          169 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----------KE-----H------PS  227 (395)
Q Consensus       169 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~-----~------~~  227 (395)
                      +++.       +.-.+.++   ++++.++++.|+++.|+++..+.++.-.+..+          .+     +      ..
T Consensus       170 Alqv-------sGyqpllA---YniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa  239 (459)
T KOG4340|consen  170 ALQV-------SGYQPLLA---YNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA  239 (459)
T ss_pred             HHhh-------cCCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence            8885       23344443   67888999999999999988887765433211          00     0      11


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHH-----------------HHHHHH-----------hhCCCCcchHHHHHHHHH
Q 016114          228 FVTHLLNLAASYSRSKNFVEAERLLRIC-----------------LDIMTK-----------TVGPDDQSISFPMLHLGI  279 (395)
Q Consensus       228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a-----------------~~~~~~-----------~~~~~~~~~~~~~~~la~  279 (395)
                      ...+++..+.++.+.|+++.|.+.+...                 +.-...           .++. .|.-..++.++-.
T Consensus       240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~-nPfP~ETFANlLl  318 (459)
T KOG4340|consen  240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQ-NPFPPETFANLLL  318 (459)
T ss_pred             HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhc-CCCChHHHHHHHH
Confidence            2345556677888888888887655321                 110000           0011 2333344556666


Q ss_pred             HHHhcCChHHHHHHHHHH------------HHHHHHH-cCCCChHHH-HH-----------HHHH-HHHHHHcCCchh--
Q 016114          280 TLYHLNRDKEAEKLVLEA------------LYIREIA-FGKDSLPVG-EA-----------LDCL-VSIQTRLGEDDT--  331 (395)
Q Consensus       280 ~~~~~g~~~~A~~~~~~a------------l~~~~~~-~~~~~~~~~-~~-----------~~~l-~~~~~~~~~~~~--  331 (395)
                      +|.+..-++-|...+-+-            .++.... .-+..|+.+ .-           +..+ +.+.....+.+.  
T Consensus       319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a  398 (459)
T KOG4340|consen  319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEA  398 (459)
T ss_pred             HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence            666666666665443221            0111110 112222221 11           1111 112222211111  


Q ss_pred             --HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          332 --KLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       332 --~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                        .|++-|+++++++           ..++...+.+|....++..+.+.|+...+.+.++
T Consensus       399 ~R~ai~~Yd~~LE~Y-----------LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~eh  447 (459)
T KOG4340|consen  399 IRKAVNEYDETLEKY-----------LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDH  447 (459)
T ss_pred             HHHHHHHHHHHHHHH-----------HHHHHHHHHhhccccccHHHHHHHHHHHhhhccc
Confidence              3344444444433           3456677889999999999999999999887765

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.37  E-value=1.4e-11  Score=89.00  Aligned_cols=110  Identities=12%  Similarity=0.135  Sum_probs=93.6

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      +..+|..+...|++++|+.+|++++.+        +|....++..+|.++...|++++|+..|++++.+        .|.
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~   90 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DAS   90 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCC
Confidence            556899999999999999999999875        3556778999999999999999999999999986        577


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK  153 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  153 (395)
                      ...+++++|.++...|++++|+..|++++.+        .|.....+.+.+.+.
T Consensus        91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~  136 (144)
T PRK15359         91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQ  136 (144)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHH
Confidence            7899999999999999999999999999987        233334455555544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.37  E-value=3e-11  Score=87.18  Aligned_cols=110  Identities=11%  Similarity=0.057  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCC
Q 016114           37 MLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK  116 (395)
Q Consensus        37 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  116 (395)
                      ..++++++++.        |..   +..+|.++...|++++|...|++++..        .|....++..+|.++...|+
T Consensus        13 ~~~~~~al~~~--------p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~   73 (144)
T PRK15359         13 EDILKQLLSVD--------PET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE   73 (144)
T ss_pred             HHHHHHHHHcC--------HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence            34677777652        322   446799999999999999999999875        67778999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114          117 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus       117 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                      +++|+..|.+++.+        +|....++.++|.++...|++++|+..|++++.+.
T Consensus        74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999986        45666789999999999999999999999999863

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.36  E-value=1.4e-08  Score=86.57  Aligned_cols=337  Identities=12%  Similarity=0.089  Sum_probs=205.5

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHH--HHHHHhh-------Cc------hhH
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM--AKVLGSI-------GR------AKK   77 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--~~~~~~~-------g~------~~~   77 (395)
                      +......+..||..|...|.+++|...|++++.......  +...+.+++...  ..+...+       |+      .+-
T Consensus       244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr--DFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~  321 (835)
T KOG2047|consen  244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR--DFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL  321 (835)
T ss_pred             cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh--hHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence            445677789999999999999999999999987643321  111111111111  0111111       11      111


Q ss_pred             HHHHHHHHHHHHH----HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 016114           78 AVEIYHRVITILE----LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK  153 (395)
Q Consensus        78 A~~~~~~al~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  153 (395)
                      ....|+..+....    ...-..+|.....+.  -.+-...|+..+-+..|.+|+....-....  ......+..+|..|
T Consensus       322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~--kRV~l~e~~~~~~i~tyteAv~~vdP~ka~--Gs~~~Lw~~faklY  397 (835)
T KOG2047|consen  322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWH--KRVKLYEGNAAEQINTYTEAVKTVDPKKAV--GSPGTLWVEFAKLY  397 (835)
T ss_pred             HHHHHHHHHhccchHHHHHHHhcCCccHHHHH--hhhhhhcCChHHHHHHHHHHHHccCcccCC--CChhhHHHHHHHHH
Confidence            2222332222110    000012333333333  334455688888888999888754222111  22455788999999


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh----hhCCCChh--
Q 016114          154 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK----YKGKEHPS--  227 (395)
Q Consensus       154 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~--  227 (395)
                      ...|+.+.|...|+++...      .-+.-..++.++.+.|..-....+++.|..+++.|...-..    .+...+|.  
T Consensus       398 e~~~~l~~aRvifeka~~V------~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~  471 (835)
T KOG2047|consen  398 ENNGDLDDARVIFEKATKV------PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQA  471 (835)
T ss_pred             HhcCcHHHHHHHHHHhhcC------CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence            9999999999999999875      22334556788888998888999999999999988754322    11122232  


Q ss_pred             ----HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 016114          228 ----FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  303 (395)
Q Consensus       228 ----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  303 (395)
                          ...+|...+.+....|-++.....|++.+++.        ..+..+..|.|..+....-++++.+.|++.+.++. 
T Consensus       472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr--------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk-  542 (835)
T KOG2047|consen  472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR--------IATPQIIINYAMFLEEHKYFEESFKAYERGISLFK-  542 (835)
T ss_pred             HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC-
Confidence                23345556666667777777778888877753        23344557888888888899999999999888762 


Q ss_pred             HcCCCChHHHHHHHH---HHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHH-HHHHHHHHHhcchhhhchhh
Q 016114          304 AFGKDSLPVGEALDC---LVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTL-KKVVSYLDKLGRKEEKFPLK  379 (395)
Q Consensus       304 ~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~  379 (395)
                           .|.+...+..   -..........+ .|..+|++|++.       ..|....+. ...|.+-..-|--..|+..|
T Consensus       543 -----~p~v~diW~tYLtkfi~rygg~klE-raRdLFEqaL~~-------Cpp~~aKtiyLlYA~lEEe~GLar~amsiy  609 (835)
T KOG2047|consen  543 -----WPNVYDIWNTYLTKFIKRYGGTKLE-RARDLFEQALDG-------CPPEHAKTIYLLYAKLEEEHGLARHAMSIY  609 (835)
T ss_pred             -----CccHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence                 2333333332   222222223455 899999999874       234444433 34455555667777777777


Q ss_pred             HHHH
Q 016114          380 KRLS  383 (395)
Q Consensus       380 ~~a~  383 (395)
                      ++|.
T Consensus       610 erat  613 (835)
T KOG2047|consen  610 ERAT  613 (835)
T ss_pred             HHHH
Confidence            7764

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=99.34  E-value=1.7e-10  Score=105.84  Aligned_cols=361  Identities=15%  Similarity=0.121  Sum_probs=268.4

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhh
Q 016114           24 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  103 (395)
Q Consensus        24 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  103 (395)
                      +......+++.+|...=++++++.+...+.+.|+....+..++..++......+|+.+-.+.+.+.....+..+|..+..
T Consensus       672 ~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~  751 (1236)
T KOG1839|consen  672 AVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAAT  751 (1236)
T ss_pred             ceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccch
Confidence            44445567888899999999999999999999999999999997778888889999999999998877776666666544


Q ss_pred             HHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH---CCCH---------------------
Q 016114          104 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---NGNA---------------------  159 (395)
Q Consensus       104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~---------------------  159 (395)
                      +.+....-...|  +-+..+...+++...+..+.++...+.+ ..+...+..   ....                     
T Consensus       752 ~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g  828 (1236)
T KOG1839|consen  752 YINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAG  828 (1236)
T ss_pred             hhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccC
Confidence            333332222222  5666677777666666555555544333 222111111   0000                     


Q ss_pred             -------------------------------HHHH--HHHHHHH--------------------HHHHhcccCCC-----
Q 016114          160 -------------------------------EEAV--ELYKKAL--------------------RVIKDSNYMSL-----  181 (395)
Q Consensus       160 -------------------------------~~A~--~~~~~a~--------------------~~~~~~~~~~~-----  181 (395)
                                                     ..+.  .....+.                    ....+......     
T Consensus       829 ~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks  908 (1236)
T KOG1839|consen  829 TPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKS  908 (1236)
T ss_pred             CCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCC
Confidence                                           0000  0010000                    00000000000     


Q ss_pred             ----------------Cch--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh
Q 016114          182 ----------------DDS--IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK  243 (395)
Q Consensus       182 ----------------~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~  243 (395)
                                      ..|  ....-....+......|.+.+|.+ ..+++.......+.-++.....+..++.++...|
T Consensus       909 ~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~  987 (1236)
T KOG1839|consen  909 EFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLG  987 (1236)
T ss_pred             CCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhc
Confidence                            001  011112334455555677888888 7788888888888889999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 016114          244 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQ  323 (395)
Q Consensus       244 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~  323 (395)
                      +.++|+..-.++.-+.+...|.+++.+...+.+++...+..++...|...+.++..+..-.++++||..+.+..++..++
T Consensus       988 d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~ 1067 (1236)
T KOG1839|consen  988 DNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLL 1067 (1236)
T ss_pred             chHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             HHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          324 TRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       324 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      ...++++ .|+.+.+.|+....+++++....+...+..+++++..++++..|....+....+..+.
T Consensus      1068 ~~v~e~d-~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~q 1132 (1236)
T KOG1839|consen 1068 LGVEEAD-TALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQ 1132 (1236)
T ss_pred             hhHHHHH-HHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHh
Confidence            9999999 9999999999999999999988999999999999999999999999988888776653

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=8.5e-08  Score=81.13  Aligned_cols=331  Identities=13%  Similarity=0.077  Sum_probs=203.1

Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChH-------HHHHHHHHHHHHHHhhCchhHHHHH
Q 016114            9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEI   81 (395)
Q Consensus         9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~   81 (395)
                      ....+.+.-..+++.+.++...|+|.+|++.++++++++++.+..++.       ....+...++.++..+|+..+|...
T Consensus       167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i  246 (652)
T KOG2376|consen  167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI  246 (652)
T ss_pred             ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            333344466778999999999999999999999999998776543321       3556677899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHH-HHHHHHHHHHH----HHHHhCCCChhHHHHHHHHHHHHHHC
Q 016114           82 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRILKI----YTKVYGENDGRVGMAMCSLAHAKCAN  156 (395)
Q Consensus        82 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~al~~----~~~~~~~~~~~~~~~~~~la~~~~~~  156 (395)
                      |...+..    ...|.|..+.+-++|-.+-....-++. ++..++.-...    ....+  .+...-.++.+.+.+....
T Consensus       247 y~~~i~~----~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L--s~~qk~~i~~N~~lL~l~t  320 (652)
T KOG2376|consen  247 YVDIIKR----NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL--SKKQKQAIYRNNALLALFT  320 (652)
T ss_pred             HHHHHHh----cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence            9988765    234566667777776655443333331 11111111000    00000  1122233455555555555


Q ss_pred             CCHHHHHHHHHHHHHHHHhcccCCCCc-hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhH-HHHHHH
Q 016114          157 GNAEEAVELYKKALRVIKDSNYMSLDD-SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF-VTHLLN  234 (395)
Q Consensus       157 g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~  234 (395)
                      +..+.+.+....          ..+.. .....+ ............+.+|..++...-+        .+|.. ..+...
T Consensus       321 nk~~q~r~~~a~----------lp~~~p~~~~~~-ll~~~t~~~~~~~~ka~e~L~~~~~--------~~p~~s~~v~L~  381 (652)
T KOG2376|consen  321 NKMDQVRELSAS----------LPGMSPESLFPI-LLQEATKVREKKHKKAIELLLQFAD--------GHPEKSKVVLLL  381 (652)
T ss_pred             hhHHHHHHHHHh----------CCccCchHHHHH-HHHHHHHHHHHHHhhhHHHHHHHhc--------cCCchhHHHHHH
Confidence            555544443322          12222 222322 2233333333356777776665433        23333 556777


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhhC--CCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHH
Q 016114          235 LAASYSRSKNFVEAERLLRICLDIMTKTVG--PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV  312 (395)
Q Consensus       235 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  312 (395)
                      ++.+...+|+++.|++.+...+........  ...|.+.   ..+-..+...++.+.|...+.+|+......... .+..
T Consensus       382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V---~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~-s~~l  457 (652)
T KOG2376|consen  382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV---GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG-SIAL  457 (652)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH---HHHHHHHHhccCCccHHHHHHHHHHHHHHhccc-chHH
Confidence            889999999999999999865543332221  2334433   334456778888888999999999988765432 2444


Q ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchh
Q 016114          313 GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPL  378 (395)
Q Consensus       313 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  378 (395)
                      ...+..++.+-.+.|+.+ +|...+++.++.        +|....++..+...|... +.+.|..+
T Consensus       458 ~~~~~~aa~f~lr~G~~~-ea~s~leel~k~--------n~~d~~~l~~lV~a~~~~-d~eka~~l  513 (652)
T KOG2376|consen  458 LSLMREAAEFKLRHGNEE-EASSLLEELVKF--------NPNDTDLLVQLVTAYARL-DPEKAESL  513 (652)
T ss_pred             HhHHHHHhHHHHhcCchH-HHHHHHHHHHHh--------CCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence            455666788888889988 999999998864        233355666666666543 35555443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.33  E-value=7.2e-09  Score=89.99  Aligned_cols=263  Identities=16%  Similarity=0.086  Sum_probs=162.2

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC-----chhHHHHHHHHHHH
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-----RAKKAVEIYHRVIT   87 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~   87 (395)
                      -++...++...|.++...|++++|...|...++..        |+....+..+..+.....     ..+.-..+|.+...
T Consensus        34 I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--------Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~  105 (517)
T PF12569_consen   34 ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--------PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAE  105 (517)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHH
Confidence            34556777889999999999999999999998762        233334444444442222     23444445544333


Q ss_pred             HHHHhcCC--------C----------------ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH--hC-----
Q 016114           88 ILELNRGT--------E----------------SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV--YG-----  136 (395)
Q Consensus        88 ~~~~~~~~--------~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~-----  136 (395)
                      .+.+...+        .                ...++....++-.+|....+..-...++.......+..  +.     
T Consensus       106 ~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~  185 (517)
T PF12569_consen  106 KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDE  185 (517)
T ss_pred             hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcccc
Confidence            22110000        0                00112223333333332222111112222221111110  00     


Q ss_pred             -CCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 016114          137 -ENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  214 (395)
Q Consensus       137 -~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  214 (395)
                       ..+|. ...+++.+|..|...|++++|+.+++++++.          .|.....+...|.++-..|++.+|...++.|.
T Consensus       186 ~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h----------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar  255 (517)
T PF12569_consen  186 EKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH----------TPTLVELYMTKARILKHAGDLKEAAEAMDEAR  255 (517)
T ss_pred             ccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence             12232 4567889999999999999999999999983          34456778999999999999999999999987


Q ss_pred             HHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh-CC-CC---cchHHHHHHHHHHHHhcCChHH
Q 016114          215 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV-GP-DD---QSISFPMLHLGITLYHLNRDKE  289 (395)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~-~~---~~~~~~~~~la~~~~~~g~~~~  289 (395)
                      .+-        ...-.+-...+..+.+.|+.++|...+.....    .. ++ .+   ....+.....|.+|.++|++..
T Consensus       256 ~LD--------~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr----~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~  323 (517)
T PF12569_consen  256 ELD--------LADRYINSKCAKYLLRAGRIEEAEKTASLFTR----EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL  323 (517)
T ss_pred             hCC--------hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC----CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            652        22223334567778899999999987765432    11 00 00   1223444567999999999999


Q ss_pred             HHHHHHHHHHHHHHHc
Q 016114          290 AEKLVLEALYIREIAF  305 (395)
Q Consensus       290 A~~~~~~al~~~~~~~  305 (395)
                      |++.|..+.+.+....
T Consensus       324 ALk~~~~v~k~f~~~~  339 (517)
T PF12569_consen  324 ALKRFHAVLKHFDDFE  339 (517)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999987764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.32  E-value=1.1e-09  Score=99.47  Aligned_cols=250  Identities=14%  Similarity=0.052  Sum_probs=170.9

Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114            9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   88 (395)
Q Consensus         9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   88 (395)
                      ++.-+|....++..|...+...+++++|+..++.+++.        +|.....++.+|.++...+++.++...  .++..
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~   92 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS   92 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence            44557888899999999999999999999999988774        456677888899999999998888766  55544


Q ss_pred             HHHhcC-----------CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC
Q 016114           89 LELNRG-----------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  157 (395)
Q Consensus        89 ~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  157 (395)
                      ......           .+.+..-.+++.+|.||..+|+.++|...+++++++        +|..+.+++++|..|... 
T Consensus        93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-  163 (906)
T PRK14720         93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-  163 (906)
T ss_pred             cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-
Confidence            322100           012333468889999999999999999999999987        477778999999999999 


Q ss_pred             CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHH
Q 016114          158 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  237 (395)
Q Consensus       158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  237 (395)
                      +.++|+.++.+|+...-..    .........|.  -.+.....+.+.=....++.+..    .  .....+..+.-+=.
T Consensus       164 dL~KA~~m~~KAV~~~i~~----kq~~~~~e~W~--k~~~~~~~d~d~f~~i~~ki~~~----~--~~~~~~~~~~~l~~  231 (906)
T PRK14720        164 DKEKAITYLKKAIYRFIKK----KQYVGIEEIWS--KLVHYNSDDFDFFLRIERKVLGH----R--EFTRLVGLLEDLYE  231 (906)
T ss_pred             hHHHHHHHHHHHHHHHHhh----hcchHHHHHHH--HHHhcCcccchHHHHHHHHHHhh----h--ccchhHHHHHHHHH
Confidence            9999999999998875432    11111111111  11222222333322222222221    1  12234455666778


Q ss_pred             HHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114          238 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  300 (395)
Q Consensus       238 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  300 (395)
                      .|...++|++++.+++.+++.        .+....+...++.+|.  +.|.. ...+++.+++
T Consensus       232 ~y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~  283 (906)
T PRK14720        232 PYKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKM  283 (906)
T ss_pred             HHhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence            889999999999999999983        3445567788888887  33333 4445555444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.32  E-value=2.2e-10  Score=87.37  Aligned_cols=102  Identities=14%  Similarity=0.174  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHH-HHcCC--hHHHHHHHHHHHHHHH
Q 016114           56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF-IKEGK--AVDAESVFSRILKIYT  132 (395)
Q Consensus        56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~al~~~~  132 (395)
                      |.....+..+|.++...|++++|+..|++++.+        .|....++..+|.++ ...|+  +++|...++++++.  
T Consensus        70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--  139 (198)
T PRK10370         70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--  139 (198)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--
Confidence            455678999999999999999999999999987        567788899999974 67787  59999999999986  


Q ss_pred             HHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114          133 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus       133 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                            +|....++..+|..+...|++++|+.+++++++..
T Consensus       140 ------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        140 ------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             ------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence                  56666789999999999999999999999999874

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.31  E-value=1.9e-10  Score=87.16  Aligned_cols=164  Identities=20%  Similarity=0.143  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114           56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  135 (395)
Q Consensus        56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  135 (395)
                      |....+ ..++..+...|+-+.+..+..++...        ++.....+..+|......|++.+|+..+.++...     
T Consensus        64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----  129 (257)
T COG5010          64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----  129 (257)
T ss_pred             cchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----
Confidence            333444 77888999999999988888776543        4444555666899999999999999999999875     


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114          136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  215 (395)
Q Consensus       136 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  215 (395)
                         .|.....++.+|.+|.+.|++++|..-|.+++++..       ..+   .+.+|+|..+.-.|+++.|..++..+..
T Consensus       130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-------~~p---~~~nNlgms~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-------NEP---SIANNLGMSLLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-------CCc---hhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence               566678899999999999999999999999999753       222   3458999999999999999999998765


Q ss_pred             HHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016114          216 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  254 (395)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  254 (395)
                      .        .+....+..+++.+...+|++++|.....+
T Consensus       197 ~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         197 S--------PAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             C--------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            2        233456778999999999999999886544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.30  E-value=4e-08  Score=79.13  Aligned_cols=274  Identities=14%  Similarity=0.077  Sum_probs=183.7

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      +.-.-.+..-+.....+|+++.+-.++.++-+..      ++ .........+......|+++.|..-..++++.     
T Consensus       115 e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------~~-~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~-----  182 (400)
T COG3071         115 EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA------GD-DTLAVELTRARLLLNRRDYPAARENVDQLLEM-----  182 (400)
T ss_pred             cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC------CC-chHHHHHHHHHHHHhCCCchhHHHHHHHHHHh-----
Confidence            3334445667788889999999999999887642      11 33445667889999999999999999988876     


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--HHHCCCHHHHHH---HHHH
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA--KCANGNAEEAVE---LYKK  168 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~---~~~~  168 (395)
                         .|....++.....+|...|++.+...+..+.-+..  .  -+++.. .-+-+.+..  +...++-..+..   +.+.
T Consensus       183 ---~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~--l~~~e~-~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         183 ---TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--L--LSDEEA-ARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             ---CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--C--CChHHH-HHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence               56666777888899999999999888877654421  1  112222 222222221  222222222222   2222


Q ss_pred             HHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHH
Q 016114          169 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  248 (395)
Q Consensus       169 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  248 (395)
                      .-...       ..++.   +...++.-+...|+.++|.+..+++++..      .++.   ....++  ...-++...=
T Consensus       255 ~pr~l-------r~~p~---l~~~~a~~li~l~~~~~A~~~i~~~Lk~~------~D~~---L~~~~~--~l~~~d~~~l  313 (400)
T COG3071         255 QPRKL-------RNDPE---LVVAYAERLIRLGDHDEAQEIIEDALKRQ------WDPR---LCRLIP--RLRPGDPEPL  313 (400)
T ss_pred             ccHHh-------hcChh---HHHHHHHHHHHcCChHHHHHHHHHHHHhc------cChh---HHHHHh--hcCCCCchHH
Confidence            11111       12222   22557888899999999999999988742      2232   111111  2344666666


Q ss_pred             HHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC
Q 016114          249 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE  328 (395)
Q Consensus       249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  328 (395)
                      ++..++.+.        .+|+....+..||.++.+.+.|.+|..+|+.+++..     +    ....+..+|.++.+.|+
T Consensus       314 ~k~~e~~l~--------~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~-----~----s~~~~~~la~~~~~~g~  376 (400)
T COG3071         314 IKAAEKWLK--------QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR-----P----SASDYAELADALDQLGE  376 (400)
T ss_pred             HHHHHHHHH--------hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-----C----ChhhHHHHHHHHHHcCC
Confidence            666666655        355566788999999999999999999999888743     1    22457889999999999


Q ss_pred             chhHHHHHHHHHHHHHHh
Q 016114          329 DDTKLLELLKRVLRIQER  346 (395)
Q Consensus       329 ~~~~A~~~~~~al~~~~~  346 (395)
                      .. +|.+.+++++.+..+
T Consensus       377 ~~-~A~~~r~e~L~~~~~  393 (400)
T COG3071         377 PE-EAEQVRREALLLTRQ  393 (400)
T ss_pred             hH-HHHHHHHHHHHHhcC
Confidence            99 999999999966544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.29  E-value=3.4e-10  Score=85.81  Aligned_cols=165  Identities=16%  Similarity=0.123  Sum_probs=130.1

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      +|....+ ..++..+...|+-+.+..+..++...        ++.....+..+|......|++.+|+..++++...    
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----  129 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----  129 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----
Confidence            3444444 66777777788887777777665432        2333345555899999999999999999999876    


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                          .|....+++.+|.+|.+.|++++|..-|.+++++.        +....+.+|+|..+.-.|+++.|..++..+...
T Consensus       130 ----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~  197 (257)
T COG5010         130 ----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS  197 (257)
T ss_pred             ----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence                67778899999999999999999999999999984        223357899999999999999999999998763


Q ss_pred             HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114          173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  212 (395)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  212 (395)
                             ++.+   ..+..|++.+...+|++++|.....+
T Consensus       198 -------~~ad---~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         198 -------PAAD---SRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             -------CCCc---hHHHHHHHHHHhhcCChHHHHhhccc
Confidence                   2222   23458999999999999999876543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.29  E-value=3.2e-09  Score=96.66  Aligned_cols=250  Identities=13%  Similarity=0.059  Sum_probs=170.7

Q ss_pred             CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114           95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  174 (395)
Q Consensus        95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  174 (395)
                      .-+|....++..|...+...+++++|...++.+++.        +|.....++.+|.++...+++.++...  .++.+..
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~   94 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS   94 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence            346788889999999999999999999999988775        567777888999999999999888777  6665543


Q ss_pred             hcccC---------CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcH
Q 016114          175 DSNYM---------SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF  245 (395)
Q Consensus       175 ~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  245 (395)
                      .....         -.+.+....++..+|.+|..+|+.++|...+++++++        +|..+.+++++|..|... ++
T Consensus        95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720         95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hH
Confidence            21000         0001111246788999999999999999999999985        367788999999999999 99


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 016114          246 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR  325 (395)
Q Consensus       246 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~  325 (395)
                      ++|+.++.+|+..+-..  .........|..  .+.....+.+.=....++.....      ........+.-+-..|..
T Consensus       166 ~KA~~m~~KAV~~~i~~--kq~~~~~e~W~k--~~~~~~~d~d~f~~i~~ki~~~~------~~~~~~~~~~~l~~~y~~  235 (906)
T PRK14720        166 EKAITYLKKAIYRFIKK--KQYVGIEEIWSK--LVHYNSDDFDFFLRIERKVLGHR------EFTRLVGLLEDLYEPYKA  235 (906)
T ss_pred             HHHHHHHHHHHHHHHhh--hcchHHHHHHHH--HHhcCcccchHHHHHHHHHHhhh------ccchhHHHHHHHHHHHhh
Confidence            99999999998864322  111111122221  12222333333333333322211      122344556677788888


Q ss_pred             cCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHH
Q 016114          326 LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  385 (395)
Q Consensus       326 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  385 (395)
                      ..+++ +++.+++.++++.        |....+...++.+|.  +.|.. -..++..+.+
T Consensus       236 ~~~~~-~~i~iLK~iL~~~--------~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~  283 (906)
T PRK14720        236 LEDWD-EVIYILKKILEHD--------NKNNKAREELIRFYK--EKYKD-HSLLEDYLKM  283 (906)
T ss_pred             hhhhh-HHHHHHHHHHhcC--------CcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence            88898 8999999998752        334556788888887  55554 5555555544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.28  E-value=4.7e-10  Score=79.26  Aligned_cols=107  Identities=11%  Similarity=0.131  Sum_probs=96.2

Q ss_pred             cCCCc-HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHH
Q 016114            9 LKDDE-PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT   87 (395)
Q Consensus         9 l~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   87 (395)
                      +.+.+ ++.-+.++.+|..++..|++++|...|+-...+        +|.....+++||.++..+|++.+|+..|.++..
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~   97 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ   97 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            44556 777888899999999999999999999987765        467788899999999999999999999999998


Q ss_pred             HHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114           88 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  131 (395)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  131 (395)
                      +        .|+.+..+.++|.++...|+.+.|.+.|+.++..+
T Consensus        98 L--------~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         98 I--------KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             c--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            7        56777899999999999999999999999999987

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.28  E-value=6.5e-09  Score=80.06  Aligned_cols=167  Identities=19%  Similarity=0.142  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Q 016114          142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  221 (395)
Q Consensus       142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  221 (395)
                      ....++..|......|++.+|+..|++.+...       |.++....+...+|.++...|++++|+..+++.+...    
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y----   72 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY----   72 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence            34567889999999999999999999998864       5566677788999999999999999999999988764    


Q ss_pred             CCCChhHHHHHHHHHHHHHhhh-----------cHHHHHHHHHHHHHHHHHhhCCCCcchHHH--------------HHH
Q 016114          222 GKEHPSFVTHLLNLAASYSRSK-----------NFVEAERLLRICLDIMTKTVGPDDQSISFP--------------MLH  276 (395)
Q Consensus       222 ~~~~~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--------------~~~  276 (395)
                       |.++....+++.+|.++....           ...+|...|+..+..+     |+++....+              -..
T Consensus        73 -P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~  146 (203)
T PF13525_consen   73 -PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELY  146 (203)
T ss_dssp             -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence             456777888888888866543           3447777777776543     344433322              245


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCch
Q 016114          277 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD  330 (395)
Q Consensus       277 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  330 (395)
                      +|..|.+.|.+..|+..++.+++.+     |+.+....++..++..+.+.|..+
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChH
Confidence            6889999999999999999999876     777888889999999999999766

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.27  E-value=2.7e-09  Score=81.42  Aligned_cols=150  Identities=15%  Similarity=0.164  Sum_probs=116.0

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhh
Q 016114           23 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  102 (395)
Q Consensus        23 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  102 (395)
                      -+-.|+..|+++......++..       ++..            -+...++.++++..+++++..        +|....
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~-------~~~~------------~~~~~~~~~~~i~~l~~~L~~--------~P~~~~   74 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLA-------DPLH------------QFASQQTPEAQLQALQDKIRA--------NPQNSE   74 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHh-------Cccc------------cccCchhHHHHHHHHHHHHHH--------CCCCHH
Confidence            3456888899887654432111       1100            111366778888888888876        677788


Q ss_pred             hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-HHCCC--HHHHHHHHHHHHHHHHhcccC
Q 016114          103 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK-CANGN--AEEAVELYKKALRVIKDSNYM  179 (395)
Q Consensus       103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~a~~~~~~~~~~  179 (395)
                      .+..+|.+|...|++++|+..|++++.+        .|....++..+|.++ ...|+  +++|...++++++.       
T Consensus        75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-------  139 (198)
T PRK10370         75 QWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL-------  139 (198)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-------
Confidence            9999999999999999999999999987        455567788999874 67787  59999999999985       


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114          180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  217 (395)
Q Consensus       180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  217 (395)
                      .+++   ..++.++|..+...|++++|+.+++++++..
T Consensus       140 dP~~---~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        140 DANE---VTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             CCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            2333   3467899999999999999999999998873

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.27  E-value=5e-08  Score=85.75  Aligned_cols=260  Identities=13%  Similarity=0.078  Sum_probs=156.8

Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH---hCCCChh---------HHHHHHHHHHHHHHCCCHHHHH
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV---YGENDGR---------VGMAMCSLAHAKCANGNAEEAV  163 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~  163 (395)
                      +......+|++.+.-+...++.+.|+++|+++-.-...+   +.++.+.         ....+...|......|+.+.|+
T Consensus       853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl  932 (1416)
T KOG3617|consen  853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL  932 (1416)
T ss_pred             cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence            344556788999999999999999999999863211111   1111111         1134566788888899999999


Q ss_pred             HHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh
Q 016114          164 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK  243 (395)
Q Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~  243 (395)
                      .+|..|-+.                  +.+..+..-+|+.++|-.+.++.-             ...+.+.||+.|...|
T Consensus       933 ~~Y~~A~D~------------------fs~VrI~C~qGk~~kAa~iA~esg-------------d~AAcYhlaR~YEn~g  981 (1416)
T KOG3617|consen  933 SFYSSAKDY------------------FSMVRIKCIQGKTDKAARIAEESG-------------DKAACYHLARMYENDG  981 (1416)
T ss_pred             HHHHHhhhh------------------hhheeeEeeccCchHHHHHHHhcc-------------cHHHHHHHHHHhhhhH
Confidence            999887654                  345566677788887766555421             1234567888888888


Q ss_pred             cHHHHHHHHHHHHH------HHHHhhCCCCc------chHHHHHHHHHHHHhcC-ChHHHHHHHHHH-------------
Q 016114          244 NFVEAERLLRICLD------IMTKTVGPDDQ------SISFPMLHLGITLYHLN-RDKEAEKLVLEA-------------  297 (395)
Q Consensus       244 ~~~~A~~~~~~a~~------~~~~~~~~~~~------~~~~~~~~la~~~~~~g-~~~~A~~~~~~a-------------  297 (395)
                      ++.+|+.+|.+|..      ++++..-.+..      ....-....|..|...| +.+.|..+|.+|             
T Consensus       982 ~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~t 1061 (1416)
T KOG3617|consen  982 DVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRT 1061 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhh
Confidence            88888888876643      22221000000      00001122344455555 666666665543             


Q ss_pred             -----HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH------HHHHHHHHhc-----------cC------
Q 016114          298 -----LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL------KRVLRIQERE-----------FG------  349 (395)
Q Consensus       298 -----l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~------~~al~~~~~~-----------~~------  349 (395)
                           +++..+-+.++.  .+..+..-+..+....+++ +|..++      +.|+.+....           ..      
T Consensus      1062 qQf~aL~lIa~DLd~~s--Dp~ll~RcadFF~~~~qye-kAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~ 1138 (1416)
T KOG3617|consen 1062 QQFSALDLIAKDLDAGS--DPKLLRRCADFFENNQQYE-KAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDM 1138 (1416)
T ss_pred             cccHHHHHHHHhcCCCC--CHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCC
Confidence                 222222222221  1234666778888888888 887665      4445444221           11      


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          350 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       350 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      ++......++..+|.++.++|.|..|-+-|.+|-.--+.+
T Consensus      1139 ~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AM 1178 (1416)
T KOG3617|consen 1139 PNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAM 1178 (1416)
T ss_pred             ccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHH
Confidence            1123456788999999999999999999888875544433

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=99.27  E-value=2.9e-09  Score=98.13  Aligned_cols=209  Identities=19%  Similarity=0.209  Sum_probs=186.0

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh
Q 016114          147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  226 (395)
Q Consensus       147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  226 (395)
                      ...+......|.+.+|.+ ..+++......  .+.-++.+..++..++.++...|+.++|+.+-.++.-+.++..|.+++
T Consensus       936 ~e~gq~~~~e~~~~~~~~-~~~slnl~~~v--~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen  936 PEQGQEALLEDGFSEAYE-LPESLNLLNNV--MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred             hhhhhhhhcccchhhhhh-hhhhhhHHHHh--hhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence            344555666777888888 77777776644  456678888999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Q 016114          227 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG  306 (395)
Q Consensus       227 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  306 (395)
                      .....+.+++......++...|...+.++..+..-..++++|..+.+..+++.++...++++.|+.+.+.|....+..++
T Consensus      1013 ~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG 1092 (1236)
T ss_pred             HHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC
Confidence            99999999999999999999999999999998888888899999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHH
Q 016114          307 KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTL  359 (395)
Q Consensus       307 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  359 (395)
                      +.+..++..+..+++++...+++. .|....+....++...+|++++......
T Consensus      1093 ~~~l~~~~~~~~~a~l~~s~~dfr-~al~~ek~t~~iy~~qlg~~hsrt~~S~ 1144 (1236)
T KOG1839|consen 1093 PKELETALSYHALARLFESMKDFR-NALEHEKVTYGIYKEQLGPDHSRTKESS 1144 (1236)
T ss_pred             ccchhhhhHHHHHHHHHhhhHHHH-HHHHHHhhHHHHHHHhhCCCcccchhhH
Confidence            999999999999999999999999 9999999999999999999887655443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.26  E-value=6.1e-10  Score=83.36  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=95.0

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      ....+..++.+|.++...|++++|+..|++++.+.     ++++....++.++|.++...|++++|+..+++++.+    
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~----  101 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER----  101 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence            34467788999999999999999999999999873     233455678999999999999999999999999986    


Q ss_pred             cCCCChhhhhhHHhHHHHHH-------HcCChHHHHHHHHHHHHHHHHHhCCCChhH
Q 016114           93 RGTESADLVLPLFSLGSLFI-------KEGKAVDAESVFSRILKIYTKVYGENDGRV  142 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  142 (395)
                          .|.....+..+|.++.       ..|+++.|...+.+++..+++..+.+++..
T Consensus       102 ----~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        102 ----NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             ----CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence                2333445555555555       999999999999999999888877666443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.26  E-value=4e-09  Score=81.20  Aligned_cols=169  Identities=16%  Similarity=0.138  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC
Q 016114          187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  266 (395)
Q Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  266 (395)
                      ...+...|..+...|++.+|+..|++.+...     +.++....+...+|.++...|++++|+..+++.+...     |+
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~   74 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PN   74 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            3456788999999999999999999988764     3567778889999999999999999999999988743     67


Q ss_pred             CcchHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHHHHHHcCCCChHHHH--------------HHHHHHH
Q 016114          267 DQSISFPMLHLGITLYHLN-----------RDKEAEKLVLEALYIREIAFGKDSLPVGE--------------ALDCLVS  321 (395)
Q Consensus       267 ~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------~~~~l~~  321 (395)
                      ++....+++.+|.++....           ...+|...|+..+..+     |+++....              --..+|.
T Consensus        75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia~  149 (203)
T PF13525_consen   75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIAR  149 (203)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888889999998876543           2346777777777655     44443322              2345788


Q ss_pred             HHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhc
Q 016114          322 IQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF  376 (395)
Q Consensus       322 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  376 (395)
                      .|.+.|.+. .|+..++.+++-+     ++.+....++..++..|...|..+.|.
T Consensus       150 ~Y~~~~~y~-aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  150 FYYKRGKYK-AAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHCTT-HH-HHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHcccHH-HHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            999999999 9999999999875     567888899999999999999988543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.25  E-value=8.2e-10  Score=95.19  Aligned_cols=227  Identities=15%  Similarity=0.123  Sum_probs=173.2

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      |.....-..++..+...|-...|+..|++.-                .+.....||...|+..+|..+..+-++      
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erle----------------mw~~vi~CY~~lg~~~kaeei~~q~le------  452 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERLE----------------MWDPVILCYLLLGQHGKAEEINRQELE------  452 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhHH----------------HHHHHHHHHHHhcccchHHHHHHHHhc------
Confidence            3344455678999999999999988887642                344567888899999999888776544      


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                         .+..+..|.       ..|++-.--.+|+++.++....       .+.+...+|......++|+++.+.++.++++.
T Consensus       453 ---k~~d~~lyc-------~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n  515 (777)
T KOG1128|consen  453 ---KDPDPRLYC-------LLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEIN  515 (777)
T ss_pred             ---CCCcchhHH-------HhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhcC
Confidence               122333444       4455555566777777764332       23466677777788999999999999999863


Q ss_pred             HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114          174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  253 (395)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  253 (395)
                                +.....++.+|.+....++++.|.+.|..++.+        .|+...+|+|++..|...++-.+|...++
T Consensus       516 ----------plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~  577 (777)
T KOG1128|consen  516 ----------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLK  577 (777)
T ss_pred             ----------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence                      334567899999999999999999999998875        57778899999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc
Q 016114          254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  305 (395)
Q Consensus       254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  305 (395)
                      ++++.        +.....++.|.-.+....|.+++|++.+.+.+.+.+...
T Consensus       578 EAlKc--------n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  578 EALKC--------NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             HHhhc--------CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence            99883        234445666777788899999999999999988876544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.24  E-value=1.6e-08  Score=79.81  Aligned_cols=188  Identities=12%  Similarity=0.063  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   95 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   95 (395)
                      .+..++..|..+...|+|++|+..|++.+...     +.++....+...+|.+++..+++++|+..+++.+..     .|
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P  100 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NP  100 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----Cc
Confidence            34557788999999999999999999998863     455777788899999999999999999999999987     46


Q ss_pred             CChhhhhhHHhHHHHHHHcC---------------C---hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC
Q 016114           96 ESADLVLPLFSLGSLFIKEG---------------K---AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  157 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  157 (395)
                      ++|....+++.+|.++...+               +   ..+|...|++.++.+     |+++-.               
T Consensus       101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya---------------  160 (243)
T PRK10866        101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYT---------------  160 (243)
T ss_pred             CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhH---------------
Confidence            78888999999998865543               1   124445555555442     122222               


Q ss_pred             CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHH
Q 016114          158 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  237 (395)
Q Consensus       158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  237 (395)
                        .+|...+..+....             +.--..+|..|.+.|+|..|+.-++.+++-.     ++.+....++..++.
T Consensus       161 --~~A~~rl~~l~~~l-------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~  220 (243)
T PRK10866        161 --TDATKRLVFLKDRL-------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMEN  220 (243)
T ss_pred             --HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHH
Confidence              22222222222211             1122467888888888888888888877754     345667778888888


Q ss_pred             HHHhhhcHHHHHHHHH
Q 016114          238 SYSRSKNFVEAERLLR  253 (395)
Q Consensus       238 ~~~~~~~~~~A~~~~~  253 (395)
                      .|...|..++|.....
T Consensus       221 ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        221 AYRQLQLNAQADKVAK  236 (243)
T ss_pred             HHHHcCChHHHHHHHH
Confidence            8888888888877654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.24  E-value=6.4e-10  Score=78.61  Aligned_cols=103  Identities=17%  Similarity=0.088  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114           56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  135 (395)
Q Consensus        56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  135 (395)
                      ++..+..+.+|..++..|++++|...|+-...+        +|.....+++||.++..+|++.+|+..|.+++.+     
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----   98 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----   98 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            677788999999999999999999999988776        6888899999999999999999999999999987     


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114          136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  174 (395)
Q Consensus       136 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  174 (395)
                         +|+....+.++|.++...|+.+.|.+.|+.++..+.
T Consensus        99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363         99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence               345557899999999999999999999999999873

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.24  E-value=2.9e-08  Score=78.29  Aligned_cols=187  Identities=10%  Similarity=-0.022  Sum_probs=131.2

Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  179 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  179 (395)
                      .....+..|..+...|++++|+..|++.+...     +..+....+...+|.++...+++++|+..+++.++.       
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-------   98 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-------   98 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------
Confidence            34557778889999999999999999998863     455667778899999999999999999999999985       


Q ss_pred             CCCchHHHHHHHHHHHHHHHcC---------------Ch---HHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh
Q 016114          180 SLDDSIMENMRIDLAELLHIVG---------------RG---QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR  241 (395)
Q Consensus       180 ~~~~~~~~~~~~~la~~~~~~g---------------~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  241 (395)
                      .|+++....++..+|.++...+               +.   .+|+..+++.++.+     |+.+..             
T Consensus        99 ~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya-------------  160 (243)
T PRK10866         99 NPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYT-------------  160 (243)
T ss_pred             CcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhH-------------
Confidence            4666777778888888764443               11   23445555544432     122211             


Q ss_pred             hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 016114          242 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS  321 (395)
Q Consensus       242 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  321 (395)
                          .+|...+......           .+.--..+|..|.+.|.+..|+.-++.+++-+     |+.+...+++..+..
T Consensus       161 ----~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~  220 (243)
T PRK10866        161 ----TDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMEN  220 (243)
T ss_pred             ----HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHH
Confidence                2222211111111           11122467888888899988988888888766     677778888889999


Q ss_pred             HHHHcCCchhHHHHHH
Q 016114          322 IQTRLGEDDTKLLELL  337 (395)
Q Consensus       322 ~~~~~~~~~~~A~~~~  337 (395)
                      .|...|..+ +|....
T Consensus       221 ay~~lg~~~-~a~~~~  235 (243)
T PRK10866        221 AYRQLQLNA-QADKVA  235 (243)
T ss_pred             HHHHcCChH-HHHHHH
Confidence            999999887 666544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.22  E-value=1.7e-09  Score=80.93  Aligned_cols=117  Identities=14%  Similarity=0.114  Sum_probs=92.7

Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 016114          140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  219 (395)
Q Consensus       140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  219 (395)
                      ...+..+..+|.++...|++++|+..+++++.+.       +++.....++.++|.++...|++++|+..+++++.+.  
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-------~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--  102 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-------IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--  102 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence            3456788999999999999999999999999863       2334445678999999999999999999999999862  


Q ss_pred             hhCCCChhHHHHHHHHHHHHH-------hhhcHHHHHHHHHHHHHHHHHhhCCCCcchH
Q 016114          220 YKGKEHPSFVTHLLNLAASYS-------RSKNFVEAERLLRICLDIMTKTVGPDDQSIS  271 (395)
Q Consensus       220 ~~~~~~~~~~~~~~~la~~~~-------~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  271 (395)
                            |.....+.++|.++.       ..|++++|...+.+++..+++..+.+++...
T Consensus       103 ------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~  155 (168)
T CHL00033        103 ------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI  155 (168)
T ss_pred             ------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence                  222334445555555       8999999999999999988888777664443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=1.6e-07  Score=70.53  Aligned_cols=226  Identities=15%  Similarity=0.113  Sum_probs=164.9

Q ss_pred             cChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114           53 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  132 (395)
Q Consensus        53 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  132 (395)
                      ++....+..+..-+.+|....+|++|...+.++.+..+...  .....+.++-..+.+......+.++..+++++..++.
T Consensus        25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~  102 (308)
T KOG1585|consen   25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV  102 (308)
T ss_pred             CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            44445566677778888899999999999999998776532  3445567788888889999999999999999999988


Q ss_pred             HHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114          133 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  212 (395)
Q Consensus       133 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  212 (395)
                      ..   ..|+.+..-...+--.....++++|+.+|++++.+....    .........+...++++.+..++++|-..+.+
T Consensus       103 E~---GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~----dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  103 EC---GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED----DRDQMAFELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             Hh---CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            76   355555444455555677889999999999999998752    33444456667889999999999999988887


Q ss_pred             HHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHH
Q 016114          213 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  292 (395)
Q Consensus       213 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  292 (395)
                      -..+.....  ..+.....+.....+|....++..|..+++...++    .+-..++...++.+|-.. +..|+.++..+
T Consensus       176 e~~~~~~~~--~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~a-yd~gD~E~~~k  248 (308)
T KOG1585|consen  176 EGVAADKCD--AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTA-YDEGDIEEIKK  248 (308)
T ss_pred             hhhHHHHHh--hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHH-hccCCHHHHHH
Confidence            766655543  23344445556667778888999999999876553    222344555666666544 45678777655


Q ss_pred             HH
Q 016114          293 LV  294 (395)
Q Consensus       293 ~~  294 (395)
                      .+
T Consensus       249 vl  250 (308)
T KOG1585|consen  249 VL  250 (308)
T ss_pred             HH
Confidence            54

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.20  E-value=1.2e-07  Score=81.10  Aligned_cols=317  Identities=12%  Similarity=0.057  Sum_probs=207.8

Q ss_pred             HHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHH
Q 016114           26 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF  105 (395)
Q Consensus        26 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  105 (395)
                      +-+..|+..+-+..|.+|+..........  .....+..+|..|...|+.+.|...|+++...-    -+.-.+.+.++.
T Consensus       356 V~l~e~~~~~~i~tyteAv~~vdP~ka~G--s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~----y~~v~dLa~vw~  429 (835)
T KOG2047|consen  356 VKLYEGNAAEQINTYTEAVKTVDPKKAVG--SPGTLWVEFAKLYENNGDLDDARVIFEKATKVP----YKTVEDLAEVWC  429 (835)
T ss_pred             hhhhcCChHHHHHHHHHHHHccCcccCCC--ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC----ccchHHHHHHHH
Confidence            33456888899999999987653322222  234567889999999999999999999998751    122345678888


Q ss_pred             hHHHHHHHcCChHHHHHHHHHHHHHHHH----HhCCCChh------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114          106 SLGSLFIKEGKAVDAESVFSRILKIYTK----VYGENDGR------VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus       106 ~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      .-|..-....+++.|..+.++|...-..    .+....|.      ...++...+......|-++.....|++.+++--.
T Consensus       430 ~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria  509 (835)
T KOG2047|consen  430 AWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA  509 (835)
T ss_pred             HHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence            8898888999999999999988754221    11122232      2334556677777788888888888888886432


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHH---HHHHHhhhcHHHHHHHH
Q 016114          176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL---AASYSRSKNFVEAERLL  252 (395)
Q Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---a~~~~~~~~~~~A~~~~  252 (395)
                             .|   .+..|.|..+....-++++.+.|++.+.++      ..|.....|+..   ..--...-..+.|..+|
T Consensus       510 -------TP---qii~NyAmfLEeh~yfeesFk~YErgI~LF------k~p~v~diW~tYLtkfi~rygg~klEraRdLF  573 (835)
T KOG2047|consen  510 -------TP---QIIINYAMFLEEHKYFEESFKAYERGISLF------KWPNVYDIWNTYLTKFIKRYGGTKLERARDLF  573 (835)
T ss_pred             -------CH---HHHHHHHHHHHhhHHHHHHHHHHHcCCccC------CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence                   22   334778888888888999999999988875      234444444432   22222334789999999


Q ss_pred             HHHHHHHHHhhCCCCcchHHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH--HHHHHHHcCCc
Q 016114          253 RICLDIMTKTVGPDDQSISFP-MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDC--LVSIQTRLGED  329 (395)
Q Consensus       253 ~~a~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~  329 (395)
                      +++++.       ..|..+.+ +...|.+-..-|--..|+..|++|-..       .++.....+++  +..+....|= 
T Consensus       574 EqaL~~-------Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-------v~~a~~l~myni~I~kaae~yGv-  638 (835)
T KOG2047|consen  574 EQALDG-------CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-------VKEAQRLDMYNIYIKKAAEIYGV-  638 (835)
T ss_pred             HHHHhc-------CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHHHHHHhCC-
Confidence            999983       23444443 334455555667777777777776442       22222111111  3333334442 


Q ss_pred             hhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114          330 DTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  386 (395)
Q Consensus       330 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  386 (395)
                      . .-.+.|++|++..      .+..........|.+-.+.|..+.|...|....++.
T Consensus       639 ~-~TR~iYekaIe~L------p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~  688 (835)
T KOG2047|consen  639 P-RTREIYEKAIESL------PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC  688 (835)
T ss_pred             c-ccHHHHHHHHHhC------ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence            2 4567888888763      223445566677888888888888888877665543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.20  E-value=4.2e-09  Score=90.96  Aligned_cols=226  Identities=18%  Similarity=0.169  Sum_probs=171.9

Q ss_pred             HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114           57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  136 (395)
                      ........++..+...|-..+|...|++.                ..+.....||...|+..+|.....+-++       
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Erl----------------emw~~vi~CY~~lg~~~kaeei~~q~le-------  452 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFERL----------------EMWDPVILCYLLLGQHGKAEEINRQELE-------  452 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHhH----------------HHHHHHHHHHHHhcccchHHHHHHHHhc-------
Confidence            34455667889999999999998888764                2344567788889999999888776554       


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                        .+.....|..+|.+...       -.+|+++.++.+..         .+.+...+|......++|+++.+.++.++++
T Consensus       453 --k~~d~~lyc~LGDv~~d-------~s~yEkawElsn~~---------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~  514 (777)
T KOG1128|consen  453 --KDPDPRLYCLLGDVLHD-------PSLYEKAWELSNYI---------SARAQRSLALLILSNKDFSEADKHLERSLEI  514 (777)
T ss_pred             --CCCcchhHHHhhhhccC-------hHHHHHHHHHhhhh---------hHHHHHhhccccccchhHHHHHHHHHHHhhc
Confidence              23333455556555544       45555555554321         1234456777777789999999999999986


Q ss_pred             HHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016114          217 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  296 (395)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  296 (395)
                              +|....+|+.+|.+..+.++++.|.+.|...+.        -.|+...+|.+++..|...|+-.+|...+++
T Consensus       515 --------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E  578 (777)
T KOG1128|consen  515 --------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE  578 (777)
T ss_pred             --------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence                    466678899999999999999999999999887        3678889999999999999999999999999


Q ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhcc
Q 016114          297 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF  348 (395)
Q Consensus       297 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~  348 (395)
                      |++.-     ..++.   .+.+.-.+....|.++ .|+..+.+.+.+.+...
T Consensus       579 AlKcn-----~~~w~---iWENymlvsvdvge~e-da~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  579 ALKCN-----YQHWQ---IWENYMLVSVDVGEFE-DAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             HhhcC-----CCCCe---eeechhhhhhhcccHH-HHHHHHHHHHHhhhhcc
Confidence            98853     23333   4555566778899999 99999999998877654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.19  E-value=1.8e-09  Score=77.89  Aligned_cols=103  Identities=14%  Similarity=0.096  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114           55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  134 (395)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  134 (395)
                      +|........+|..+...|++++|...+++++..        .|....++..+|.++...|++++|..++++++..    
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----   80 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL----   80 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            3445677889999999999999999999998875        4566788999999999999999999999999876    


Q ss_pred             hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114          135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus       135 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                          +|.....+..+|.++...|++++|+..++++++..
T Consensus        81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence                35556778999999999999999999999999864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.19  E-value=7.7e-09  Score=75.13  Aligned_cols=123  Identities=22%  Similarity=0.215  Sum_probs=98.7

Q ss_pred             HcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHH
Q 016114          113 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID  192 (395)
Q Consensus       113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  192 (395)
                      ..++...+...+++.+.-     .++.+....+...+|.++...|++++|...|+.++..       .+++.....+...
T Consensus        23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-------~~d~~l~~~a~l~   90 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-------APDPELKPLARLR   90 (145)
T ss_pred             HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CCCHHHHHHHHHH
Confidence            577888877777776654     3445556778889999999999999999999999884       3455666667788


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114          193 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  256 (395)
Q Consensus       193 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  256 (395)
                      +|.++...|++++|+..++..         +..+........+|.++...|++++|...|++++
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999999999999999998652         1334455677789999999999999999999874

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.18  E-value=1.6e-09  Score=78.10  Aligned_cols=108  Identities=13%  Similarity=0.157  Sum_probs=92.7

Q ss_pred             hhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHH
Q 016114            7 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI   86 (395)
Q Consensus         7 ~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   86 (395)
                      +..-..+|........+|..+...|++++|...+++++...        |....++..+|.++...|++++|...+++++
T Consensus         7 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~   78 (135)
T TIGR02552         7 KDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--------PYNSRYWLGLAACCQMLKEYEEAIDAYALAA   78 (135)
T ss_pred             HHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444567777888999999999999999999999988752        3345678899999999999999999999988


Q ss_pred             HHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           87 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      ..        .|.....+..+|.++...|++++|+..++++++.
T Consensus        79 ~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        79 AL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             hc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            75        4666788899999999999999999999999987

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.17  E-value=9.1e-09  Score=74.76  Aligned_cols=132  Identities=17%  Similarity=0.169  Sum_probs=103.6

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      .+.........++...+...+++.+.-     .++++....+...+|.++...|++++|...|+.++..     .+++..
T Consensus        14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l   83 (145)
T PF09976_consen   14 LYEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPEL   83 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHH
Confidence            334444444688888887777766653     3455667788889999999999999999999999875     234445


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  170 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  170 (395)
                      ...+...++.++...|++++|+..++..         ++.+........+|.++...|++++|...|++++
T Consensus        84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   84 KPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            5667889999999999999999998652         2344556678889999999999999999999874

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.17  E-value=4.1e-09  Score=79.15  Aligned_cols=112  Identities=17%  Similarity=0.274  Sum_probs=88.3

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   91 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   91 (395)
                      ..+..+..++.+|..+...|++++|+.+|++++....     +.+....++..+|.++...|++++|+..+++++..   
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---  101 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---  101 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            4566778889999999999999999999999998643     23345678999999999999999999999999986   


Q ss_pred             hcCCCChhhhhhHHhHHHHHHHcCC-------hHHHHHHHHHHHHHHHHHhC
Q 016114           92 NRGTESADLVLPLFSLGSLFIKEGK-------AVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~al~~~~~~~~  136 (395)
                           .|.....+..+|.++...|+       ++.|+..+.++++.+++...
T Consensus       102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~  148 (172)
T PRK02603        102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR  148 (172)
T ss_pred             -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence                 34456667777888877655       56666666777666665543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=1.3e-07  Score=71.06  Aligned_cols=228  Identities=12%  Similarity=0.079  Sum_probs=163.4

Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114            9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   88 (395)
Q Consensus         9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   88 (395)
                      ..++....+..|..-+..|....+|++|...+.++.+-.+..  ...-..+.++-..+........+.++..+++++..+
T Consensus        23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~l  100 (308)
T KOG1585|consen   23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL  100 (308)
T ss_pred             cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            345566677888899999999999999999999999876553  222355677778888888999999999999999999


Q ss_pred             HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016114           89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  168 (395)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  168 (395)
                      +.+..   .|+.+..-..-+--....-++++|+.+|++++.+.+..  .........+...+.++....++++|-..+.+
T Consensus       101 Y~E~G---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  101 YVECG---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             HHHhC---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            88764   44444433344444556778999999999999998652  22223455677888999999999999998888


Q ss_pred             HHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHH
Q 016114          169 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  248 (395)
Q Consensus       169 a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  248 (395)
                      -..+..+.    ...+.....+.....+|....+|..|..+++..-++    .+...++...++.+|-..| ..|+.++.
T Consensus       176 e~~~~~~~----~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~  246 (308)
T KOG1585|consen  176 EGVAADKC----DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEI  246 (308)
T ss_pred             hhhHHHHH----hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence            76665543    122222333444555667777999999999886554    2234556667777776655 45777766


Q ss_pred             HHHH
Q 016114          249 ERLL  252 (395)
Q Consensus       249 ~~~~  252 (395)
                      ...+
T Consensus       247 ~kvl  250 (308)
T KOG1585|consen  247 KKVL  250 (308)
T ss_pred             HHHH
Confidence            5544

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=1.2e-06  Score=72.59  Aligned_cols=354  Identities=12%  Similarity=0.069  Sum_probs=225.7

Q ss_pred             HHHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC-chhHHHHHHHHHHHHHHHhcC
Q 016114           17 DAILLHMGSMY-STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELNRG   94 (395)
Q Consensus        17 ~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~   94 (395)
                      +.....+|.+. ....+++.|...++++..+.+.... -......+...++.+|.... .+..+...+++++++.+..  
T Consensus        46 art~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~-fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~--  122 (629)
T KOG2300|consen   46 ARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPS-FYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV--  122 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccccc-HHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC--
Confidence            45556777664 4678999999999999998876522 22355677788899888877 8889999999999875432  


Q ss_pred             CCChhhhhhHHhHHHHHHHcCChHHHHHHHHH----------------------------------------HHHHHHH-
Q 016114           95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSR----------------------------------------ILKIYTK-  133 (395)
Q Consensus        95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----------------------------------------al~~~~~-  133 (395)
                        ..........|+.++.-..++..|.+.+.-                                        +-.+.+. 
T Consensus       123 --p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~  200 (629)
T KOG2300|consen  123 --PYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNI  200 (629)
T ss_pred             --chhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcc
Confidence              122233444455555555555544443211                                        1000000 


Q ss_pred             -------------------------------------------------------HhCCCChhHHH--------HHHHHH
Q 016114          134 -------------------------------------------------------VYGENDGRVGM--------AMCSLA  150 (395)
Q Consensus       134 -------------------------------------------------------~~~~~~~~~~~--------~~~~la  150 (395)
                                                                             ++|.+.+....        ++..+-
T Consensus       201 ~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~  280 (629)
T KOG2300|consen  201 SSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLV  280 (629)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhh
Confidence                                                                   01111221111        111111


Q ss_pred             HH--HHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHH----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114          151 HA--KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM----ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  224 (395)
Q Consensus       151 ~~--~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  224 (395)
                      .+  -.-.|-+++|.++-++++....+....+...+.+    ...+.++..+-.-.|++.+|++-...+.+.+.+..++.
T Consensus       281 tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~  360 (629)
T KOG2300|consen  281 TVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPL  360 (629)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchH
Confidence            11  1235678889999999888776652222122221    22345567777788999999999999888877654321


Q ss_pred             --ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114          225 --HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  302 (395)
Q Consensus       225 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  302 (395)
                        ....+.....+|......+.++.|+..|..+.+...+.     .-.+.+-.++|.+|...|+-+.-.+.+    +.. 
T Consensus       361 Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~~l----d~i-  430 (629)
T KOG2300|consen  361 LLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLYKAL----DLI-  430 (629)
T ss_pred             HHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHHHH----Hhc-
Confidence              12244556677887888899999999999998854332     124556678999999988865543333    221 


Q ss_pred             HHcCCCC-------hHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhh
Q 016114          303 IAFGKDS-------LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEK  375 (395)
Q Consensus       303 ~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  375 (395)
                         ++.+       ...+.+++.-|.....++++. +|..++.+.+++...  .....-..-.+..|+.+....|+..++
T Consensus       431 ---~p~nt~s~ssq~l~a~~~~v~glfaf~qn~ln-EaK~~l~e~Lkmana--ed~~rL~a~~LvLLs~v~lslgn~~es  504 (629)
T KOG2300|consen  431 ---GPLNTNSLSSQRLEASILYVYGLFAFKQNDLN-EAKRFLRETLKMANA--EDLNRLTACSLVLLSHVFLSLGNTVES  504 (629)
T ss_pred             ---CCCCCCcchHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence               2221       122445666777788899999 999999999988632  122233455677889999999999999


Q ss_pred             chhhHHHHHHHHHHHh
Q 016114          376 FPLKKRLSNLRMKYKQ  391 (395)
Q Consensus       376 ~~~~~~a~~~~~~~~~  391 (395)
                      ....+-++++.+++..
T Consensus       505 ~nmvrpamqlAkKi~D  520 (629)
T KOG2300|consen  505 RNMVRPAMQLAKKIPD  520 (629)
T ss_pred             HhccchHHHHHhcCCC
Confidence            9999999988887643

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.16  E-value=9e-10  Score=85.24  Aligned_cols=102  Identities=17%  Similarity=0.239  Sum_probs=92.9

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      ....+..+-.-|.-....++|.+|+..|.+|+.+        +|..+..+.+.+.+|.++|.++.|++-++.++.+    
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i----  144 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI----  144 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence            4456777888999999999999999999999997        3445667889999999999999999999999997    


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                          +|....+|..||.+|..+|++.+|++.|++++++
T Consensus       145 ----Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel  178 (304)
T KOG0553|consen  145 ----DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL  178 (304)
T ss_pred             ----ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence                7889999999999999999999999999999987

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.15  E-value=1.8e-08  Score=77.92  Aligned_cols=223  Identities=14%  Similarity=0.094  Sum_probs=156.1

Q ss_pred             HhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 016114           70 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  149 (395)
Q Consensus        70 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  149 (395)
                      ....+|.+|++++..-.+        ..|.....+..+|.||....+|..|.++|++.-..        .|........-
T Consensus        21 I~d~ry~DaI~~l~s~~E--------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~   84 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELE--------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ   84 (459)
T ss_pred             HHHhhHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence            456677788777654433        35556677889999999999999999999987654        67766677778


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHH
Q 016114          150 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  229 (395)
Q Consensus       150 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  229 (395)
                      +..++..+.+.+|+.......+          ++.....+...-+.+.+..+++..+..+.++.       .   ....+
T Consensus        85 AQSLY~A~i~ADALrV~~~~~D----------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-------p---~en~A  144 (459)
T KOG4340|consen   85 AQSLYKACIYADALRVAFLLLD----------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-------P---SENEA  144 (459)
T ss_pred             HHHHHHhcccHHHHHHHHHhcC----------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc-------c---CCCcc
Confidence            8889999999999887765432          23334445455566777788887777665542       1   12345


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc----
Q 016114          230 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF----  305 (395)
Q Consensus       230 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----  305 (395)
                      ....+.|.+..+.|+++.|.+-|+.+++.     ++..|..   -++++.++++.|+++.|+++..+.++.-.+..    
T Consensus       145 d~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpll---AYniALaHy~~~qyasALk~iSEIieRG~r~HPElg  216 (459)
T KOG4340|consen  145 DGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPLL---AYNLALAHYSSRQYASALKHISEIIERGIRQHPELG  216 (459)
T ss_pred             chhccchheeeccccHHHHHHHHHHHHhh-----cCCCchh---HHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence            67788999999999999999999999883     3344443   36889999999999999999888876543211    


Q ss_pred             ------CCCC-----h------HHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114          306 ------GKDS-----L------PVGEALDCLVSIQTRLGEDDTKLLELL  337 (395)
Q Consensus       306 ------~~~~-----~------~~~~~~~~l~~~~~~~~~~~~~A~~~~  337 (395)
                            +++.     +      ...++++.-+-++.+.++++ .|.+.+
T Consensus       217 IGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~e-AA~eaL  264 (459)
T KOG4340|consen  217 IGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYE-AAQEAL  264 (459)
T ss_pred             ccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHH-HHHHHh
Confidence                  0110     0      11334445566777888877 665443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.15  E-value=2.9e-07  Score=69.69  Aligned_cols=192  Identities=19%  Similarity=0.120  Sum_probs=139.3

Q ss_pred             chhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 016114           74 RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK  153 (395)
Q Consensus        74 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  153 (395)
                      +.++-.++....+.....-  ...++....+-.+..+....|+.+-|..++.+....+     ++++   .+...-|..+
T Consensus        27 nseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-----p~S~---RV~~lkam~l   96 (289)
T KOG3060|consen   27 NSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-----PGSK---RVGKLKAMLL   96 (289)
T ss_pred             CHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-----CCCh---hHHHHHHHHH
Confidence            4455555555555443332  1234455566677777888999999999988766543     2333   3445567888


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHH
Q 016114          154 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL  233 (395)
Q Consensus       154 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  233 (395)
                      ...|++++|+++|+..++          ++|.-..++-..-.+...+|+.-+|++.+..-++.+        +....+|.
T Consensus        97 Ea~~~~~~A~e~y~~lL~----------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~  158 (289)
T KOG3060|consen   97 EATGNYKEAIEYYESLLE----------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWH  158 (289)
T ss_pred             HHhhchhhHHHHHHHHhc----------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHH
Confidence            999999999999999876          222223344455556677899889999888887764        33457899


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHH
Q 016114          234 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN---RDKEAEKLVLEALYIR  301 (395)
Q Consensus       234 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~  301 (395)
                      .++.+|...|+|++|.-++++.+-        ..|.....+..+|.+++-+|   +..-|.++|.+++++.
T Consensus       159 eLaeiY~~~~~f~kA~fClEE~ll--------~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  159 ELAEIYLSEGDFEKAAFCLEELLL--------IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHHHhHhHHHHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999886        35666677788898888776   4667899999999865

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.14  E-value=2.5e-07  Score=70.05  Aligned_cols=194  Identities=19%  Similarity=0.110  Sum_probs=145.0

Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHH
Q 016114           29 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG  108 (395)
Q Consensus        29 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  108 (395)
                      ...+.++-++++.+.+.-....  .-.++....+-.+..+....|+.+.|..++.+....+        |....+...-|
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lka   93 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKA   93 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHH
Confidence            3456777788887777665543  1223555667777788888999999999888765542        33445555668


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHH
Q 016114          109 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN  188 (395)
Q Consensus       109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  188 (395)
                      ..+...|++++|+++|+..++        ++|....++..--.+...+|+.-+|++.+..-++.+-.      |    ..
T Consensus        94 m~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~------D----~E  155 (289)
T KOG3060|consen   94 MLLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN------D----QE  155 (289)
T ss_pred             HHHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC------c----HH
Confidence            888999999999999998775        34554455555555677889989999999988887532      2    35


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHH
Q 016114          189 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK---NFVEAERLLRICLDI  258 (395)
Q Consensus       189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~  258 (395)
                      +|..++.+|...|+|++|.-++++.+-+        .|.....+..+|.++..+|   +..-|.++|.+++++
T Consensus       156 AW~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  156 AWHELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHHHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            6788999999999999999999998764        4556667777888877665   677899999999985

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.10  E-value=5.1e-09  Score=73.67  Aligned_cols=103  Identities=13%  Similarity=0.174  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   97 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   97 (395)
                      ..++.+|..+...|++++|+..|.+++...     ++++....+++.+|.++...|++++|+..+++++..     .+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence            567899999999999999999999998752     344455677889999999999999999999999876     2344


Q ss_pred             hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      +....++..+|.++...|++++|..++.+++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            556778999999999999999999999999987

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.10  E-value=1.8e-08  Score=81.52  Aligned_cols=261  Identities=15%  Similarity=0.107  Sum_probs=155.3

Q ss_pred             HHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHH
Q 016114           26 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF  105 (395)
Q Consensus        26 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  105 (395)
                      -++..|+|..++.-++  +.      ..+.+........+.+++..+|+++..+.-..          ...+|. ..+..
T Consensus        10 n~fy~G~Y~~~i~e~~--~~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~----------~~~~~~-l~av~   70 (290)
T PF04733_consen   10 NQFYLGNYQQCINEAS--LK------SFSPENKLERDFYQYRSYIALGQYDSVLSEIK----------KSSSPE-LQAVR   70 (290)
T ss_dssp             HHHCTT-HHHHCHHHH--CH------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-----------TTSSCC-CHHHH
T ss_pred             HHHHhhhHHHHHHHhh--cc------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhc----------cCCChh-HHHHH
Confidence            4556899988886555  11      12334556667778899999998876553221          112232 33445


Q ss_pred             hHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCch
Q 016114          106 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS  184 (395)
Q Consensus       106 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  184 (395)
                      .++..+...++-+.++.-++..+       ..... .........|.++...|++++|++.+.+.            .. 
T Consensus        71 ~la~y~~~~~~~e~~l~~l~~~~-------~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------------~~-  130 (290)
T PF04733_consen   71 LLAEYLSSPSDKESALEELKELL-------ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------------GS-  130 (290)
T ss_dssp             HHHHHHCTSTTHHCHHHHHHHCC-------CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------------TC-
T ss_pred             HHHHHHhCccchHHHHHHHHHHH-------HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------------Cc-
Confidence            55555544344444433332221       11111 22334556678888899999998887653            11 


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHh
Q 016114          185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK--NFVEAERLLRICLDIMTKT  262 (395)
Q Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~  262 (395)
                        ..+......++...++++.|.+.++...++        ..+...+....+++....|  ++.+|...|++..+     
T Consensus       131 --lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-----  195 (290)
T PF04733_consen  131 --LELLALAVQILLKMNRPDLAEKELKNMQQI--------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD-----  195 (290)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-----
T ss_pred             --ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-----
Confidence              122344667899999999999888775432        1222222223334444445  58889888887543     


Q ss_pred             hCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 016114          263 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  342 (395)
Q Consensus       263 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~  342 (395)
                         ..+.....+..++.++..+|++++|...+++++..        .|....++.+++.+....|+..+.+.+++.+...
T Consensus       196 ---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  196 ---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             ---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             ---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence               23456677889999999999999999999998752        2344567889999999999985255556655443


Q ss_pred             HHHhccCCCCHHHH
Q 016114          343 IQEREFGSESEEVM  356 (395)
Q Consensus       343 ~~~~~~~~~~~~~~  356 (395)
                      .     .|.||...
T Consensus       265 ~-----~p~h~~~~  273 (290)
T PF04733_consen  265 S-----NPNHPLVK  273 (290)
T ss_dssp             H-----TTTSHHHH
T ss_pred             h-----CCCChHHH
Confidence            2     35666543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=3.4e-06  Score=69.96  Aligned_cols=323  Identities=12%  Similarity=0.047  Sum_probs=179.9

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      +..-|..-..++++..|.+.|++|+..       + ......+...+.+-........|...+.+|+.+.        |.
T Consensus        76 WikYaqwEesq~e~~RARSv~ERALdv-------d-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--------PR  139 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERALDV-------D-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--------PR  139 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhc-------c-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--------ch
Confidence            444455555666666777777776653       3 2445567778888888899999999999998874        44


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  179 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  179 (395)
                      +-..++....+-..+|+...|...|++-++.        .|+. .++......-...+..+.|...|++-+-.       
T Consensus       140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w--------~P~e-qaW~sfI~fElRykeieraR~IYerfV~~-------  203 (677)
T KOG1915|consen  140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEW--------EPDE-QAWLSFIKFELRYKEIERARSIYERFVLV-------  203 (677)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--------CCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHhee-------
Confidence            4556666666667788888888888877654        1111 22333333333444455555555544321       


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114          180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  259 (395)
Q Consensus       180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  259 (395)
                      .   |. ...+...+..-.+.|+..-|...|+.|++....     .......+...|..-..+..++.|.-+|+-|++..
T Consensus       204 H---P~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~  274 (677)
T KOG1915|consen  204 H---PK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI  274 (677)
T ss_pred             c---cc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1   11 122334444555555555555555555544311     11122223333333344444444444443333211


Q ss_pred             ---------------HHhhC---------------------CCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 016114          260 ---------------TKTVG---------------------PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  303 (395)
Q Consensus       260 ---------------~~~~~---------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  303 (395)
                                     ++.+|                     ..+|....++...-.+-...|+.+.-.+.|++|+.-...
T Consensus       275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp  354 (677)
T KOG1915|consen  275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP  354 (677)
T ss_pred             CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence                           01111                     234666667777777778889999999999999863211


Q ss_pred             HcCCCChHHHHHHHHHHHHH---HHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhH
Q 016114          304 AFGKDSLPVGEALDCLVSIQ---TRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKK  380 (395)
Q Consensus       304 ~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  380 (395)
                      ... .....--++..+-.++   ....+.+ .+.+.|+.++++.    ...+-..+.++...|....++.+...|...+-
T Consensus       355 ~~e-kr~W~RYIYLWinYalyeEle~ed~e-rtr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG  428 (677)
T KOG1915|consen  355 ASE-KRYWRRYIYLWINYALYEELEAEDVE-RTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILG  428 (677)
T ss_pred             hhH-HHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            000 0000011122222221   2345666 8888999988763    33445566667777777777777777777777


Q ss_pred             HHHHHHHHH
Q 016114          381 RLSNLRMKY  389 (395)
Q Consensus       381 ~a~~~~~~~  389 (395)
                      .|+..+|+.
T Consensus       429 ~AIG~cPK~  437 (677)
T KOG1915|consen  429 NAIGKCPKD  437 (677)
T ss_pred             HHhccCCch
Confidence            776655543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=3.7e-06  Score=69.78  Aligned_cols=221  Identities=15%  Similarity=0.097  Sum_probs=151.5

Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHH---HHHcCChHHHHHHHHHHHH
Q 016114          139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL---LHIVGRGQEGRELLEECLL  215 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~~~~al~  215 (395)
                      +|....++...-.+-...|+.+.-.+.|++|+......   .......-.+|..+-.+   -....+.+.+.++|+.+++
T Consensus       318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~---~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~  394 (677)
T KOG1915|consen  318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPA---SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD  394 (677)
T ss_pred             CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCch---hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            45555677777777788899999999999998742110   00011111122222222   2345788999999999998


Q ss_pred             HHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHH
Q 016114          216 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  295 (395)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  295 (395)
                      +.    +..+...+..+...|....++.+...|...+-.|+..+        | ..........+-...++++....+|+
T Consensus       395 lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c--------P-K~KlFk~YIelElqL~efDRcRkLYE  461 (677)
T KOG1915|consen  395 LI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC--------P-KDKLFKGYIELELQLREFDRCRKLYE  461 (677)
T ss_pred             hc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC--------C-chhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            64    23445667788888888899999999999888887632        1 11233445566677889999999998


Q ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhh
Q 016114          296 EALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEK  375 (395)
Q Consensus       296 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  375 (395)
                      +-++.        .|....++...|.+-..+|+.+ .|...|+-|++--    ..+-|.  ..+......-...|.++.|
T Consensus       462 kfle~--------~Pe~c~~W~kyaElE~~Lgdtd-RaRaifelAi~qp----~ldmpe--llwkaYIdFEi~~~E~eka  526 (677)
T KOG1915|consen  462 KFLEF--------SPENCYAWSKYAELETSLGDTD-RARAIFELAISQP----ALDMPE--LLWKAYIDFEIEEGEFEKA  526 (677)
T ss_pred             HHHhc--------ChHhhHHHHHHHHHHHHhhhHH-HHHHHHHHHhcCc----ccccHH--HHHHHhhhhhhhcchHHHH
Confidence            88763        3777778888999999999999 8999998887421    112232  2344445566678999999


Q ss_pred             chhhHHHHHHHHHHH
Q 016114          376 FPLKKRLSNLRMKYK  390 (395)
Q Consensus       376 ~~~~~~a~~~~~~~~  390 (395)
                      ..+|++.++..+..+
T Consensus       527 R~LYerlL~rt~h~k  541 (677)
T KOG1915|consen  527 RALYERLLDRTQHVK  541 (677)
T ss_pred             HHHHHHHHHhcccch
Confidence            999999887665443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.08  E-value=7.3e-09  Score=72.90  Aligned_cols=104  Identities=17%  Similarity=0.235  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114           60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  139 (395)
Q Consensus        60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  139 (395)
                      ..++.+|..+...|++++|+..+.+++..     .++++....+++.+|.++...|++++|..++++++...     +++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence            45778899999999999999999999875     23445556788999999999999999999999998762     445


Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114          140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus       140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                      +....++..+|.++...|++++|..+++++++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence            5556788999999999999999999999999863

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.08  E-value=2.1e-08  Score=75.35  Aligned_cols=115  Identities=16%  Similarity=0.092  Sum_probs=89.2

Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114          182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  261 (395)
Q Consensus       182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  261 (395)
                      ..+.....+.++|..+...|++++|+.++++++....     +.+....++.++|.++...|++++|+..+++++..   
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---  101 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---  101 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            3455566789999999999999999999999988642     23344678899999999999999999999999984   


Q ss_pred             hhCCCCcchHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHHHHcCCCC
Q 016114          262 TVGPDDQSISFPMLHLGITLYHLNR-------DKEAEKLVLEALYIREIAFGKDS  309 (395)
Q Consensus       262 ~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~  309 (395)
                           .|.....+..+|.++...|+       ++.|...++++++........++
T Consensus       102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p  151 (172)
T PRK02603        102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP  151 (172)
T ss_pred             -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence                 35556677788888877655       66677777777776666554443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=99.06  E-value=4.2e-06  Score=74.95  Aligned_cols=341  Identities=13%  Similarity=0.036  Sum_probs=203.4

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      ++.....+..-+..+...|..++|+.+.-.|         .+....+..+.+.+.-....++..--....+..       
T Consensus       343 ~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA---------~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~l-------  406 (894)
T COG2909         343 AARLKELHRAAAEWFAEHGLPSEAIDHALAA---------GDPEMAADLLEQLEWQLFNGSELSLLLAWLKAL-------  406 (894)
T ss_pred             CCchhHHHHHHHHHHHhCCChHHHHHHHHhC---------CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhC-------
Confidence            4455667777888888999999998776543         222344444555566666666554333222211       


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG-ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  171 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  171 (395)
                      +.+--...+......++......++.+|..+..++......... ......+......|.+....|++++|+++.+.++.
T Consensus       407 P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~  486 (894)
T COG2909         407 PAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV  486 (894)
T ss_pred             CHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            00000112233445577788899999999999888765433100 01112344445567788899999999999999998


Q ss_pred             HHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHH
Q 016114          172 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  251 (395)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  251 (395)
                      ....     ........++..+|.+..-.|++++|..+..++.++.+...  .......+....+.++..+|+...|.. 
T Consensus       487 ~L~~-----~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~~-  558 (894)
T COG2909         487 QLPE-----AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAEQ-  558 (894)
T ss_pred             hccc-----ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHHH-
Confidence            7643     23333455678899999999999999999999999887653  233445566677889999994333322 


Q ss_pred             HHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchh
Q 016114          252 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT  331 (395)
Q Consensus       252 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  331 (395)
                       ..+............+.........+.++...-+++.+..-....++...... +......-.+..|+.+....|+.+ 
T Consensus       559 -~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gdl~-  635 (894)
T COG2909         559 -EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGDLD-  635 (894)
T ss_pred             -HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCCHH-
Confidence             22222222222222222222222223333333336666666666665543321 222222233458999999999999 


Q ss_pred             HHHHHHHHHHHHHHhccCCCCHHHHH-HHHHHHHHHHHhcchhhhchhhHHH
Q 016114          332 KLLELLKRVLRIQEREFGSESEEVML-TLKKVVSYLDKLGRKEEKFPLKKRL  382 (395)
Q Consensus       332 ~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a  382 (395)
                      +|.....+.......--  .+++... +..........+|+.++|.....+.
T Consensus       636 ~A~~~l~~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         636 KALAQLDELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHHHHHHHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence            99999998887765521  2333322 2222333445578888877776653

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.06  E-value=1.1e-08  Score=79.34  Aligned_cols=101  Identities=29%  Similarity=0.257  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114           56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  135 (395)
Q Consensus        56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  135 (395)
                      ...++.+-.-|.-....++|.+|+..|.+|+.+        .|..+..|.+.+.+|.++|.++.|++-++.++.+     
T Consensus        78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-----  144 (304)
T KOG0553|consen   78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-----  144 (304)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----
Confidence            345667777888899999999999999999997        6777888999999999999999999999999987     


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       136 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                         +|....+|..||.+|..+|++++|++.|++++++
T Consensus       145 ---Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel  178 (304)
T KOG0553|consen  145 ---DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL  178 (304)
T ss_pred             ---ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence               7888999999999999999999999999999995

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=5.7e-07  Score=79.39  Aligned_cols=258  Identities=15%  Similarity=0.109  Sum_probs=157.9

Q ss_pred             HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 016114           66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  145 (395)
Q Consensus        66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  145 (395)
                      +.....+|-.++|..+|.+.-..                -.|-.+|...|.+++|.+..+.          .+....-.+
T Consensus       807 AvLAieLgMlEeA~~lYr~ckR~----------------DLlNKlyQs~g~w~eA~eiAE~----------~DRiHLr~T  860 (1416)
T KOG3617|consen  807 AVLAIELGMLEEALILYRQCKRY----------------DLLNKLYQSQGMWSEAFEIAET----------KDRIHLRNT  860 (1416)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHH----------------HHHHHHHHhcccHHHHHHHHhh----------ccceehhhh
Confidence            44555677777777777765432                2344566677777777655432          244556678


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH----HHHhcccCCCCchHH---------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114          146 MCSLAHAKCANGNAEEAVELYKKALR----VIKDSNYMSLDDSIM---------ENMRIDLAELLHIVGRGQEGRELLEE  212 (395)
Q Consensus       146 ~~~la~~~~~~g~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~  212 (395)
                      |++.|.-+...++.+.|+++|+++-.    +.+-.   ..+++.+         ...|...|......|+.+.|+.+|..
T Consensus       861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL---~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML---KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH---HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            99999999999999999999998522    11110   0111110         13445678888888888888888887


Q ss_pred             HHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHH
Q 016114          213 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  292 (395)
Q Consensus       213 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  292 (395)
                      |-+                ++.+..+.+-+|+.++|..+.++.-+             ..+.+.||+.|...|++.+|+.
T Consensus       938 A~D----------------~fs~VrI~C~qGk~~kAa~iA~esgd-------------~AAcYhlaR~YEn~g~v~~Av~  988 (1416)
T KOG3617|consen  938 AKD----------------YFSMVRIKCIQGKTDKAARIAEESGD-------------KAACYHLARMYENDGDVVKAVK  988 (1416)
T ss_pred             hhh----------------hhhheeeEeeccCchHHHHHHHhccc-------------HHHHHHHHHHhhhhHHHHHHHH
Confidence            643                34556677778888888776554321             2356789999999999999999


Q ss_pred             HHHHHHHHHHHH--cCCCCh-HHH---------HHHHHHHHHHHHcC-CchhHHHHHHHHH------HH-----------
Q 016114          293 LVLEALYIREIA--FGKDSL-PVG---------EALDCLVSIQTRLG-EDDTKLLELLKRV------LR-----------  342 (395)
Q Consensus       293 ~~~~al~~~~~~--~~~~~~-~~~---------~~~~~l~~~~~~~~-~~~~~A~~~~~~a------l~-----------  342 (395)
                      .|.+|-.....+  ...+.. +..         .-+...+..|...| ... .|..+|.+|      ++           
T Consensus       989 FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~-~AVmLYHkAGm~~kALelAF~tqQf~aL 1067 (1416)
T KOG3617|consen  989 FFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAH-KAVMLYHKAGMIGKALELAFRTQQFSAL 1067 (1416)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhh-HHHHHHHhhcchHHHHHHHHhhcccHHH
Confidence            998865432111  111111 110         01223345555555 444 666665543      22           


Q ss_pred             -HHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHH
Q 016114          343 -IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  384 (395)
Q Consensus       343 -~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  384 (395)
                       +..+-+.+..  .+..+..-+..+....+|++|..++-.+..
T Consensus      1068 ~lIa~DLd~~s--Dp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1068 DLIAKDLDAGS--DPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred             HHHHHhcCCCC--CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence             2222222221  235567778888899999999877544433

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.04  E-value=1.1e-08  Score=82.83  Aligned_cols=241  Identities=16%  Similarity=0.118  Sum_probs=145.4

Q ss_pred             CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114           11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   90 (395)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   90 (395)
                      .+++........+.+.+..+|+++..+.-...          ..+|. ..+...++..+...++-+.++.-++..+    
T Consensus        29 ~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~~-l~av~~la~y~~~~~~~e~~l~~l~~~~----   93 (290)
T PF04733_consen   29 FSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSPE-LQAVRLLAEYLSSPSDKESALEELKELL----   93 (290)
T ss_dssp             STCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSCC-CHHHHHHHHHHCTSTTHHCHHHHHHHCC----
T ss_pred             CCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCChh-HHHHHHHHHHHhCccchHHHHHHHHHHH----
Confidence            34445556667788889999988765533211          11221 2334455655554344444433322211    


Q ss_pred             HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114           91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  170 (395)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  170 (395)
                        .....+.........|.++...|++++|++.+.+.          ++   .........++...++++.|.+.++.+.
T Consensus        94 --~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----------~~---lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen   94 --ADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----------GS---LELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             --CTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----------TC---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             --HhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----------Cc---ccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              11112122344556678888899999998887653          12   2344556778999999999998887764


Q ss_pred             HHHHhcccCCCCchHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHH
Q 016114          171 RVIKDSNYMSLDDSIMENMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  248 (395)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  248 (395)
                      ++       . ++..+..  ...+.+....|  ++.+|...|++..+        ..+.....++.++.+++.+|++++|
T Consensus       159 ~~-------~-eD~~l~q--La~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~~~lng~A~~~l~~~~~~eA  220 (290)
T PF04733_consen  159 QI-------D-EDSILTQ--LAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTPKLLNGLAVCHLQLGHYEEA  220 (290)
T ss_dssp             CC-------S-CCHHHHH--HHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred             hc-------C-CcHHHHH--HHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCHHHH
Confidence            42       2 2222222  22333444444  68999999988532        2234556788999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHcCCCChHH
Q 016114          249 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD-KEAEKLVLEALYIREIAFGKDSLPV  312 (395)
Q Consensus       249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~  312 (395)
                      ...+++++.        .+|....++.+++.+....|+. +.+.+++.+....     .|+||.+
T Consensus       221 e~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~-----~p~h~~~  272 (290)
T PF04733_consen  221 EELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS-----NPNHPLV  272 (290)
T ss_dssp             HHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH-----TTTSHHH
T ss_pred             HHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh-----CCCChHH
Confidence            999998875        3466677889999999999998 4555566554432     3677654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=1.4e-06  Score=72.29  Aligned_cols=255  Identities=15%  Similarity=0.046  Sum_probs=178.8

Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhcCcC--hH----HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC--Chhh
Q 016114           29 TLENYEKSMLVYQRVINVLESRYGKT--SI----LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE--SADL  100 (395)
Q Consensus        29 ~~g~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~  100 (395)
                      ..|-+++|.++-++++...++....+  .+    .....+-.+..+-...|++.+|++....+.+.+.+..++.  ....
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            56888999999999998877654433  11    1233445566777788999999999999998887754311  1223


Q ss_pred             hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc-cC
Q 016114          101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN-YM  179 (395)
Q Consensus       101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~  179 (395)
                      +...+.+|......+.++.|+..|..|.+...+.     ...+.+..++|.+|...|+-+.-.+.+    +.....+ ..
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~~l----d~i~p~nt~s  437 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLYKAL----DLIGPLNTNS  437 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHHHHH----HhcCCCCCCc
Confidence            5567778888889999999999999999875432     235566778999999988765543333    3221100 00


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114          180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  259 (395)
Q Consensus       180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  259 (395)
                      .......+.+++..|...+.++++.+|...+.+.+++.....  ...-.+-.+..|+.+....|+..++.+...-++++.
T Consensus       438 ~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed--~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA  515 (629)
T KOG2300|consen  438 LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED--LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA  515 (629)
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh--HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence            001123455666778888899999999999999998863221  233455667788999999999999999999999988


Q ss_pred             HHhhCCCCcchHHHHHHHHHHHHhcCC--hHHHHHHHHH
Q 016114          260 TKTVGPDDQSISFPMLHLGITLYHLNR--DKEAEKLVLE  296 (395)
Q Consensus       260 ~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~  296 (395)
                      ++.  ++.+...+....+-.++...|+  .+...+.+..
T Consensus       516 kKi--~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~  552 (629)
T KOG2300|consen  516 KKI--PDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK  552 (629)
T ss_pred             hcC--CCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence            877  5666666666667777888887  4444444443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.02  E-value=2.1e-08  Score=68.73  Aligned_cols=102  Identities=28%  Similarity=0.317  Sum_probs=84.5

Q ss_pred             hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114          102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  181 (395)
Q Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  181 (395)
                      .+.+.+|.++...|+.++|+.+|++++..     +.+.+....++..+|..+...|++++|+..+++++...       |
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-------p   69 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-------P   69 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------C
Confidence            46788999999999999999999999885     44566677899999999999999999999999988632       3


Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114          182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  215 (395)
Q Consensus       182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  215 (395)
                      +++....+...++.++...|++++|+..+-.++.
T Consensus        70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4333344556788999999999999999877664

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.99  E-value=2.2e-05  Score=71.49  Aligned_cols=319  Identities=13%  Similarity=0.032  Sum_probs=208.6

Q ss_pred             cChHHHHHHHHHHHHHHH-hhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114           53 KTSILLVTSLLGMAKVLG-SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  131 (395)
Q Consensus        53 ~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  131 (395)
                      ..+...+.+...+|.++. ...+++.|+.++++++.+.++ . .-......+...++.++...+... |...+++.++..
T Consensus        53 l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~-~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~  129 (608)
T PF10345_consen   53 LSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-H-RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS  129 (608)
T ss_pred             CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-c-chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence            334466778889999887 789999999999999988765 1 112223455667788998888777 999999999987


Q ss_pred             HHHhCCCChhHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHH
Q 016114          132 TKVYGENDGRVGMAMCSL-AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL  210 (395)
Q Consensus       132 ~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  210 (395)
                      +..   .+.........+ .......+++..|.+.++.........    .++.....+....+.+....+..+++++..
T Consensus       130 ~~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~----~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l  202 (608)
T PF10345_consen  130 ETY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR----GDPAVFVLASLSEALLHLRRGSPDDVLELL  202 (608)
T ss_pred             hcc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc----CCHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence            652   122222233333 333334489999999999999887532    455555555566677888888899999999


Q ss_pred             HHHHHHHHhh--hCCCChhHHHHHHHHHH--HHHhhhcHHHHHHHHHHHHHHHHHhhCCC-------C------------
Q 016114          211 EECLLITEKY--KGKEHPSFVTHLLNLAA--SYSRSKNFVEAERLLRICLDIMTKTVGPD-------D------------  267 (395)
Q Consensus       211 ~~al~~~~~~--~~~~~~~~~~~~~~la~--~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------~------------  267 (395)
                      +++.......  .+..++....++..+-.  ++...|++..+...+++.-..........       +            
T Consensus       203 ~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~  282 (608)
T PF10345_consen  203 QRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSS  282 (608)
T ss_pred             HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccc
Confidence            9997776644  11123334444444433  45567787777777665554443332111       0            


Q ss_pred             -----cc----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC---CCChH---------------HHH
Q 016114          268 -----QS----------ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG---KDSLP---------------VGE  314 (395)
Q Consensus       268 -----~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~---------------~~~  314 (395)
                           +.          .+-++..-|......|..++|.++++++++..++...   ...+.               ...
T Consensus       283 ~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~  362 (608)
T PF10345_consen  283 NSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCY  362 (608)
T ss_pred             cCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHH
Confidence                 00          0112233355566677778999999999999887651   11100               012


Q ss_pred             HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHHhcchhhhchhhHHH
Q 016114          315 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS-ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL  382 (395)
Q Consensus       315 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  382 (395)
                      ....++.+..-.+++. .|....+.+.....+...+ ........++..|..+...|+.+.|...|.+.
T Consensus       363 ~~~y~~~~~~~~~~~~-~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~  430 (608)
T PF10345_consen  363 LLFYQIWCNFIRGDWS-KATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKP  430 (608)
T ss_pred             HHHHHHHHHHHCcCHH-HHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhh
Confidence            2344566667788888 8888888887766543221 12234567788899999999999999999843

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.96  E-value=3.9e-08  Score=67.39  Aligned_cols=102  Identities=16%  Similarity=0.210  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   97 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   97 (395)
                      .+++.+|.++-..|+.++|+.+|++++..     +.+.+....++..+|..+...|++++|+..+++++...     +++
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~   71 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD   71 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence            46789999999999999999999999884     44556777899999999999999999999999987642     233


Q ss_pred             hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHH
Q 016114           98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILK  129 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  129 (395)
                      +........++.++...|+.++|+..+..++.
T Consensus        72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   72 ELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33555666788899999999999999887764

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.94  E-value=2.2e-08  Score=84.09  Aligned_cols=95  Identities=13%  Similarity=0.107  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      +...|...+..|+|++|+..|.+++.+.        |....++..+|.++...|++++|+..+++++.+        .|.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--------PNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence            4567889999999999999999999862        334567899999999999999999999999987        566


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      ...+++.+|.++...|++++|+..|++++.+
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l   99 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL   99 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            7788999999999999999999999999987

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.93  E-value=3.7e-05  Score=70.11  Aligned_cols=357  Identities=11%  Similarity=0.021  Sum_probs=222.5

Q ss_pred             hcCCCcHHHHHHHHHHHHHHH-hhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHH
Q 016114            8 SLKDDEPLLDAILLHMGSMYS-TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI   86 (395)
Q Consensus         8 ~l~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   86 (395)
                      .....+...+.+...+|.+++ ...+++.|..++++++.+.++  ..-......+...++.++...+... |...+++.+
T Consensus        50 ~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I  126 (608)
T PF10345_consen   50 QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI  126 (608)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence            333444456788899999988 788999999999999998765  2222344566677789998888877 999999999


Q ss_pred             HHHHHhcCCCChhhhhhHHhH-HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHHCCCHHHHHH
Q 016114           87 TILELNRGTESADLVLPLFSL-GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVE  164 (395)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~  164 (395)
                      +..+...   +.....+...+ .......+++..|.+.++.........   .++. ...+....+.+....+..+++++
T Consensus       127 ~~~~~~~---~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~---~d~~~~v~~~l~~~~l~l~~~~~~d~~~  200 (608)
T PF10345_consen  127 EDSETYG---HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR---GDPAVFVLASLSEALLHLRRGSPDDVLE  200 (608)
T ss_pred             HHHhccC---chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence            9876521   22222233333 333333489999999999998876542   2333 33344455677778888999999


Q ss_pred             HHHHHHHHHHhcccCCCCchHHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHHhhhCCC-------C----------
Q 016114          165 LYKKALRVIKDSNYMSLDDSIMENMRIDLAE--LLHIVGRGQEGRELLEECLLITEKYKGKE-------H----------  225 (395)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~----------  225 (395)
                      ..+++..........+...+....++..+-.  ++...|+++.+...+++.-..........       +          
T Consensus       201 ~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~  280 (608)
T PF10345_consen  201 LLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEG  280 (608)
T ss_pred             HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccc
Confidence            9999977766421011112222223333332  45567787777777665544433321110       0          


Q ss_pred             -------h----------hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhC---CCCcc---------------h
Q 016114          226 -------P----------SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG---PDDQS---------------I  270 (395)
Q Consensus       226 -------~----------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~---------------~  270 (395)
                             +          -.+-++..-|......+..++|.+++++++...++...   ...+.               .
T Consensus       281 ~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~  360 (608)
T PF10345_consen  281 SSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQ  360 (608)
T ss_pred             cccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHH
Confidence                   0          01122333355566677777999999999998887761   11111               1


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccC
Q 016114          271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK-DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  349 (395)
Q Consensus       271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  349 (395)
                      ..+...++.+..-.|++..|....+.+.....+...+ ........++..|..+...|+.+ .|...|.+..-.......
T Consensus       361 ~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~-~A~~~y~~~~~~~~~~~~  439 (608)
T PF10345_consen  361 CYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLE-AALYQYQKPRFLLCEAAN  439 (608)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHH-HHHHHHhhhHHhhhhhhc
Confidence            1233455667778899999999999888776543221 12233556777888899999999 999999855422222212


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHhcchhh
Q 016114          350 ---SESEEVMLTLKKVVSYLDKLGRKEE  374 (395)
Q Consensus       350 ---~~~~~~~~~~~~la~~~~~~g~~~~  374 (395)
                         ....-..-+..++..++...+....
T Consensus       440 ~~~~~~El~ila~LNl~~I~~~~~~~~~  467 (608)
T PF10345_consen  440 RKSKFRELYILAALNLAIILQYESSRDD  467 (608)
T ss_pred             cCCcchHHHHHHHHHHHHHhHhhcccch
Confidence               2223334455666777766655443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.93  E-value=1.1e-08  Score=66.48  Aligned_cols=83  Identities=17%  Similarity=0.283  Sum_probs=65.5

Q ss_pred             hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHH
Q 016114           30 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  109 (395)
Q Consensus        30 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  109 (395)
                      +|++++|+.+++++++..+.     ++ ....+..+|.+++..|++++|+..+++ ...        .+........+|.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~   66 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLAR   66 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHH
Confidence            68999999999999987422     22 445677799999999999999999988 333        2344566777899


Q ss_pred             HHHHcCChHHHHHHHHHH
Q 016114          110 LFIKEGKAVDAESVFSRI  127 (395)
Q Consensus       110 ~~~~~g~~~~A~~~~~~a  127 (395)
                      ++..+|++++|+..++++
T Consensus        67 ~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   67 CLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHTT-HHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHhcC
Confidence            999999999999999875

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.92  E-value=1.3e-07  Score=78.50  Aligned_cols=128  Identities=18%  Similarity=0.149  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC
Q 016114          187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  266 (395)
Q Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  266 (395)
                      ....+..+..++..|++++|+..++..+.        +.|+....+...+.++...++..+|.+.+++++..        
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--------~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------  369 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIA--------AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------  369 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Confidence            44567778888889999999998888655        35666677778899999999999999999999873        


Q ss_pred             CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114          267 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR  339 (395)
Q Consensus       267 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  339 (395)
                      .|.......++|..+...|++.+|+..++..+.        +.|+....|..|+..|..+|+.. +|...+.+
T Consensus       370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~-~a~~A~AE  433 (484)
T COG4783         370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRA-EALLARAE  433 (484)
T ss_pred             CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchH-HHHHHHHH
Confidence            455566778999999999999999888887765        33455567888999999999876 55444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.90  E-value=4.9e-08  Score=82.07  Aligned_cols=95  Identities=17%  Similarity=0.080  Sum_probs=85.1

Q ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 016114           62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  141 (395)
Q Consensus        62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  141 (395)
                      +...|...+..|++++|+..|.+++.+        .|....++..+|.++...|++++|+..+++++.+        .|.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence            445688889999999999999999986        5566788999999999999999999999999987        455


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          142 VGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      ...++..+|.++...|++++|+..|++++.+
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l   99 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL   99 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            5678999999999999999999999999986

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=1.2e-07  Score=77.05  Aligned_cols=142  Identities=19%  Similarity=0.226  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChH-------HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   88 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   88 (395)
                      .+.....-|+.++..|+|..|...|++++.........+..       ....++.+++.++..+++|.+|+..+.++|.+
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            34556778999999999999999999999987643322221       34667899999999999999999999999987


Q ss_pred             HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHH-HHHHH
Q 016114           89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA-VELYK  167 (395)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~  167 (395)
                              .|....+++.-|.++..+|+++.|+..|++++++        .|..-.+...+..+-....++.+. .+.|.
T Consensus       287 --------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~  350 (397)
T KOG0543|consen  287 --------DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYA  350 (397)
T ss_pred             --------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    6778899999999999999999999999999987        333344555566655554444433 56666


Q ss_pred             HHHHHH
Q 016114          168 KALRVI  173 (395)
Q Consensus       168 ~a~~~~  173 (395)
                      .++...
T Consensus       351 ~mF~k~  356 (397)
T KOG0543|consen  351 NMFAKL  356 (397)
T ss_pred             HHhhcc
Confidence            666543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.89  E-value=1.5e-08  Score=65.81  Aligned_cols=83  Identities=23%  Similarity=0.328  Sum_probs=64.8

Q ss_pred             hCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 016114           72 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  151 (395)
Q Consensus        72 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  151 (395)
                      .|+++.|+.+++++++...     ..+ ....+..+|.+++..|++++|+..+++ ...        .+........+|.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~   66 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLAR   66 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHH
Confidence            6899999999999998731     122 455677799999999999999999998 333        2333456667799


Q ss_pred             HHHHCCCHHHHHHHHHHH
Q 016114          152 AKCANGNAEEAVELYKKA  169 (395)
Q Consensus       152 ~~~~~g~~~~A~~~~~~a  169 (395)
                      ++..+|++++|+..++++
T Consensus        67 ~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   67 CLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHTT-HHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHhcC
Confidence            999999999999999875

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=2.7e-06  Score=63.76  Aligned_cols=177  Identities=12%  Similarity=0.081  Sum_probs=116.8

Q ss_pred             HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 016114           66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  145 (395)
Q Consensus        66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  145 (395)
                      |+.|....+++.|-..|.++-++..+..  +..+.+.++...+.+|.+ ++..+|..+++++++++....  .-..-+..
T Consensus        41 an~yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~G--rf~~aAk~  115 (288)
T KOG1586|consen   41 ANMYKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMG--RFTMAAKH  115 (288)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhh--HHHHHHhh
Confidence            4445555566666666777666655543  334556666666666654 499999999999999987652  22334556


Q ss_pred             HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114          146 MCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  224 (395)
Q Consensus       146 ~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  224 (395)
                      +..+|.+|..- .++++|+.+|+++-+.++.    .........++...+..-...++|.+|+..|++.....-     +
T Consensus       116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~----ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~-----~  186 (288)
T KOG1586|consen  116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKG----EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL-----D  186 (288)
T ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c
Confidence            67889998765 8999999999999998763    233344455667778888888999999999998765321     1


Q ss_pred             Chh----HHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114          225 HPS----FVTHLLNLAASYSRSKNFVEAERLLRICL  256 (395)
Q Consensus       225 ~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~  256 (395)
                      ++.    .-..+..-|.+++-..+.-.+...+++-.
T Consensus       187 n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~  222 (288)
T KOG1586|consen  187 NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQ  222 (288)
T ss_pred             chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHH
Confidence            221    12234445666666666655554444433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.85  E-value=3e-08  Score=61.77  Aligned_cols=64  Identities=27%  Similarity=0.451  Sum_probs=59.1

Q ss_pred             hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Q 016114          101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRV  172 (395)
Q Consensus       101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~  172 (395)
                      +.++..+|.++...|++++|+.+|.+++++        +|....++.++|.++..+| ++++|+..+++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            567889999999999999999999999997        5667789999999999999 799999999999985

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.84  E-value=5.1e-08  Score=77.42  Aligned_cols=107  Identities=14%  Similarity=0.035  Sum_probs=91.6

Q ss_pred             HHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCC
Q 016114          272 FPMLHLGITL-YHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS  350 (395)
Q Consensus       272 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  350 (395)
                      ...+..|..+ ...|++++|+..|+..+..+     |+++....+++.+|.+|...|+++ +|+..|++++..+     +
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~-~A~~~f~~vv~~y-----P  211 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKD-DAAYYFASVVKNY-----P  211 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHC-----C
Confidence            4556666655 56799999999999998876     666666788999999999999999 9999999999764     5


Q ss_pred             CCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          351 ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       351 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      +++....++..+|.++...|++++|...|+++++..++.
T Consensus       212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            678889999999999999999999999999998876543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.84  E-value=1.6e-07  Score=74.66  Aligned_cols=104  Identities=14%  Similarity=0.095  Sum_probs=88.3

Q ss_pred             HHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC
Q 016114          230 THLLNLAASY-SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  308 (395)
Q Consensus       230 ~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  308 (395)
                      ...+..|..+ ...|++++|+..|+..+..+     ++++....+++.+|.+|...|++++|+..|++++..+     |+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~  212 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK  212 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            3445555544 56799999999999988743     4555667889999999999999999999999999876     78


Q ss_pred             ChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 016114          309 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ  344 (395)
Q Consensus       309 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~  344 (395)
                      ++....++..+|.++...|+.+ +|...|+++++.+
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~-~A~~~~~~vi~~y  247 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTA-KAKAVYQQVIKKY  247 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHC
Confidence            8888999999999999999999 9999999998764

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.83  E-value=4e-08  Score=61.18  Aligned_cols=64  Identities=19%  Similarity=0.378  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcC-ChHHHHHHHHHHHHH
Q 016114           59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKI  130 (395)
Q Consensus        59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~  130 (395)
                      +..+..+|.++...|++++|+..|.+++++        +|....++.++|.++..+| ++++|+..+++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            457889999999999999999999999997        5777889999999999999 799999999999986

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.82  E-value=4.8e-05  Score=63.73  Aligned_cols=152  Identities=20%  Similarity=0.113  Sum_probs=120.6

Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 016114          140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  219 (395)
Q Consensus       140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  219 (395)
                      +....+.+..+..++..|++++|...++..+..       .|+++...   ...+.++...|+..+|.+.+++++..   
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-------~P~N~~~~---~~~~~i~~~~nk~~~A~e~~~kal~l---  369 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-------QPDNPYYL---ELAGDILLEANKAKEAIERLKKALAL---  369 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh-------CCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHhc---
Confidence            344567788899999999999999999996653       35555543   55789999999999999999999885   


Q ss_pred             hhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114          220 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  299 (395)
Q Consensus       220 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  299 (395)
                           .|.......++|..+.+.|++.+|+..++..+.        +.|+....|..||..|..+|+..+|...      
T Consensus       370 -----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~A------  430 (484)
T COG4783         370 -----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALLA------  430 (484)
T ss_pred             -----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHHH------
Confidence                 344466778999999999999999999988765        5677788899999999999998776443      


Q ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114          300 IREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  343 (395)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  343 (395)
                                         .+..+...|+++ +|+..+..+.+.
T Consensus       431 -------------------~AE~~~~~G~~~-~A~~~l~~A~~~  454 (484)
T COG4783         431 -------------------RAEGYALAGRLE-QAIIFLMRASQQ  454 (484)
T ss_pred             -------------------HHHHHHhCCCHH-HHHHHHHHHHHh
Confidence                               344455678888 888888777654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.80  E-value=1.7e-05  Score=69.80  Aligned_cols=210  Identities=14%  Similarity=0.174  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHH------HHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQR------VINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   91 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   91 (395)
                      ..|-..|.+|.+..++++|+++|++      ++++.+-.++   ...+..--..|.-+...|+++.|+..|-++-.+.+.
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp---~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka  738 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP---EEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA  738 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc---HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence            4455667778888888899888765      4444433221   234444455677788889999998888665433222


Q ss_pred             hc---C-C-------------CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 016114           92 NR---G-T-------------ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC  154 (395)
Q Consensus        92 ~~---~-~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  154 (395)
                      +.   + .             +.......|-.++.-|...|+|+.|.++|.++-..                ..-..+|.
T Consensus       739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~----------------~dai~my~  802 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF----------------KDAIDMYG  802 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh----------------HHHHHHHh
Confidence            10   0 0             11111223445677778888888888887765221                12234677


Q ss_pred             HCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHH------HHHHHHHHhhhCC-----
Q 016114          155 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL------EECLLITEKYKGK-----  223 (395)
Q Consensus       155 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~-----  223 (395)
                      +.|++.+|.++..+..           .+......|...+.-+-..|++.+|..+|      .+++.++.+..-.     
T Consensus       803 k~~kw~da~kla~e~~-----------~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmir  871 (1636)
T KOG3616|consen  803 KAGKWEDAFKLAEECH-----------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIR  871 (1636)
T ss_pred             ccccHHHHHHHHHHhc-----------CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHH
Confidence            7788888776655542           12233445556666667777777776665      3455544433211     


Q ss_pred             ----CCh-hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          224 ----EHP-SFVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       224 ----~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                          .|+ ....+...+|.-+...|+...|...|-++-+
T Consensus       872 lv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  872 LVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             HHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence                122 2345667788888899999999988877654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=2.3e-06  Score=64.13  Aligned_cols=203  Identities=13%  Similarity=0.046  Sum_probs=126.5

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHH
Q 016114          152 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  231 (395)
Q Consensus       152 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  231 (395)
                      ++...+++++|.++|.++-.+++                        ...++..|-..|.++-+...+..  +..+.+.+
T Consensus        23 lfgg~~k~eeAadl~~~Aan~yk------------------------laK~w~~AG~aflkaA~~h~k~~--skhDaat~   76 (288)
T KOG1586|consen   23 LFGGSNKYEEAAELYERAANMYK------------------------LAKNWSAAGDAFLKAADLHLKAG--SKHDAATT   76 (288)
T ss_pred             ccCCCcchHHHHHHHHHHHHHHH------------------------HHHhHHHHHHHHHHHHHHHHhcC--CchhHHHH
Confidence            33445678888888887766543                        22344444445555544443332  22344555


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHcCCCCh
Q 016114          232 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEALYIREIAFGKDSL  310 (395)
Q Consensus       232 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~  310 (395)
                      +...+.+|.+ +++++|..+++++++++....  .-...+..+..+|.+|..- .++++|+.+|+++-+.+..-  ....
T Consensus        77 YveA~~cykk-~~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~s  151 (288)
T KOG1586|consen   77 YVEAANCYKK-VDPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVS  151 (288)
T ss_pred             HHHHHHHhhc-cChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhh
Confidence            6666666654 488888888888888876651  2222344556788888875 89999999999999887532  1112


Q ss_pred             HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114          311 PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE----EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  386 (395)
Q Consensus       311 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  386 (395)
                      ..-..+...+..-...+++. +|+..|++.....-     +++    ..-.-+..-|.++....+.-.+...+++-.++.
T Consensus       152 sANKC~lKvA~yaa~leqY~-~Ai~iyeqva~~s~-----~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d  225 (288)
T KOG1586|consen  152 SANKCLLKVAQYAAQLEQYS-KAIDIYEQVARSSL-----DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD  225 (288)
T ss_pred             hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc-----cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence            22345556677777888888 89999888764321     122    122334555666766677777777777766666


Q ss_pred             HHHHh
Q 016114          387 MKYKQ  391 (395)
Q Consensus       387 ~~~~~  391 (395)
                      |.+..
T Consensus       226 P~F~d  230 (288)
T KOG1586|consen  226 PAFTD  230 (288)
T ss_pred             Ccccc
Confidence            65543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.79  E-value=7.4e-06  Score=60.78  Aligned_cols=208  Identities=13%  Similarity=0.118  Sum_probs=132.8

Q ss_pred             CCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Q 016114           10 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL   89 (395)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   89 (395)
                      +-.+...+..++..|..|-..|-+.-|..-|.+++.+.        |..+.+++.+|..+...|+|+.|.+.|...+++ 
T Consensus        58 ~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~--------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-  128 (297)
T COG4785          58 ALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-  128 (297)
T ss_pred             cCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC--------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-
Confidence            34456678888899999999999999999999998873        556678888999999999999999999988886 


Q ss_pred             HHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016114           90 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  169 (395)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  169 (395)
                             +|..--+..+.|..+..-|++.-|.+-+.+-.+.     .+++|-.. .+..+   -...-++.+|..-+.+-
T Consensus       129 -------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~-LWLYl---~E~k~dP~~A~tnL~qR  192 (297)
T COG4785         129 -------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRS-LWLYL---NEQKLDPKQAKTNLKQR  192 (297)
T ss_pred             -------CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHH-HHHHH---HHhhCCHHHHHHHHHHH
Confidence                   5666667778888888889999988877665543     23344321 11111   12344666776544332


Q ss_pred             HHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHH
Q 016114          170 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  249 (395)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  249 (395)
                      .+-        .+...+.   .++..  ...|+..+ ...++++....+... .-......+++.+|..+...|+.++|.
T Consensus       193 ~~~--------~d~e~WG---~~iV~--~yLgkiS~-e~l~~~~~a~a~~n~-~~Ae~LTEtyFYL~K~~l~~G~~~~A~  257 (297)
T COG4785         193 AEK--------SDKEQWG---WNIVE--FYLGKISE-ETLMERLKADATDNT-SLAEHLTETYFYLGKYYLSLGDLDEAT  257 (297)
T ss_pred             HHh--------ccHhhhh---HHHHH--HHHhhccH-HHHHHHHHhhccchH-HHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            221        1212211   11111  22233322 223333333221000 001224567889999999999999999


Q ss_pred             HHHHHHHH
Q 016114          250 RLLRICLD  257 (395)
Q Consensus       250 ~~~~~a~~  257 (395)
                      .+|+-++.
T Consensus       258 ~LfKLaia  265 (297)
T COG4785         258 ALFKLAVA  265 (297)
T ss_pred             HHHHHHHH
Confidence            99998876

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.77  E-value=2.3e-07  Score=62.34  Aligned_cols=96  Identities=26%  Similarity=0.343  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCc
Q 016114          189 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  268 (395)
Q Consensus       189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  268 (395)
                      ++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|...+++++..        .|
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--------DP   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CC
Confidence            35778999999999999999999988752        223367889999999999999999999998873        23


Q ss_pred             chHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114          269 SISFPMLHLGITLYHLNRDKEAEKLVLEALYI  300 (395)
Q Consensus       269 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  300 (395)
                      ....++..+|.++...|++++|..++.+++..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            33467889999999999999999999888753

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.77  E-value=1.7e-05  Score=74.38  Aligned_cols=210  Identities=15%  Similarity=0.063  Sum_probs=150.0

Q ss_pred             HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114           56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  135 (395)
Q Consensus        56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  135 (395)
                      |.-...|...-....+.++.++|.+..++|+....-   ....+....|..+-++-..-|.-+.-.+.|++|.+.+.   
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~---REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--- 1528 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINF---REEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--- 1528 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc---chhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc---
Confidence            333444555556677888999999999998876411   11122233333333334444566667778888877642   


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114          136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  215 (395)
Q Consensus       136 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  215 (395)
                          +  ...+..|..+|...+++++|.++++..++-+++.          ..+|...+..+.++++-+.|...+.+|+.
T Consensus      1529 ----~--~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~----------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1529 ----A--YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT----------RKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred             ----h--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch----------hhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence                2  2467788889999999999999999988876432          45667788888899888999999999988


Q ss_pred             HHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHH
Q 016114          216 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  295 (395)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  295 (395)
                      ...+      ..........|.+-.+.|+.+.+..+|+..+.        .+|.....|.-+...-...|+.+.+..+|+
T Consensus      1593 ~lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--------ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1593 SLPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLS--------AYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred             hcch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--------hCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence            6543      12344556678888899999999999988776        356666677777778888899999999999


Q ss_pred             HHHHHH
Q 016114          296 EALYIR  301 (395)
Q Consensus       296 ~al~~~  301 (395)
                      +++...
T Consensus      1659 Rvi~l~ 1664 (1710)
T KOG1070|consen 1659 RVIELK 1664 (1710)
T ss_pred             HHHhcC
Confidence            988753

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.77  E-value=1.3e-05  Score=75.20  Aligned_cols=250  Identities=16%  Similarity=0.132  Sum_probs=178.6

Q ss_pred             ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114           97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  176 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  176 (395)
                      +|.....|...-......++.++|.+..++|+....-.-+.+...+..++.|+-..   -|.-+.-.+.|++|.+.+.. 
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~---yG~eesl~kVFeRAcqycd~- 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA---YGTEESLKKVFERACQYCDA- 1529 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh---hCcHHHHHHHHHHHHHhcch-
Confidence            56666667666677788999999999999999764111111122344455555444   45667778889998886532 


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114          177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  256 (395)
Q Consensus       177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  256 (395)
                                ..++..|..+|...+++++|.++++..++-+.        ....+|...+..++.+++-+.|..++.+|+
T Consensus      1530 ----------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1530 ----------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred             ----------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence                      34678899999999999999999999887653        345678889999999999999999999999


Q ss_pred             HHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHH
Q 016114          257 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL  336 (395)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~  336 (395)
                      ....+      ..........|.+-++.|+.+.+..+|+-.+..+        |.....|....+.-.+.|+.. .+..+
T Consensus      1592 ~~lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--------PKRtDlW~VYid~eik~~~~~-~vR~l 1656 (1710)
T KOG1070|consen 1592 KSLPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--------PKRTDLWSVYIDMEIKHGDIK-YVRDL 1656 (1710)
T ss_pred             hhcch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--------ccchhHHHHHHHHHHccCCHH-HHHHH
Confidence            85422      2345566778999999999999999999887643        555566777788888889888 89999


Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH-hcchhhhchhhHHHHHHHHHH
Q 016114          337 LKRVLRIQEREFGSESEEVMLTLKKVVSYLDK-LGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       337 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      |++++.+-      -.+..+...+..=.-|.+ .|+-+.....=.+|.+.-+..
T Consensus      1657 feRvi~l~------l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1657 FERVIELK------LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESI 1704 (1710)
T ss_pred             HHHHHhcC------CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHh
Confidence            99998752      234444444444444444 466555555555666554443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=4.8e-07  Score=73.60  Aligned_cols=138  Identities=18%  Similarity=0.184  Sum_probs=105.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh-------hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q 016114          191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP-------SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  263 (395)
Q Consensus       191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  263 (395)
                      ..-|..|++.|+|..|...|++++.......+.+..       ....++.|++.++.+++++.+|+....+++.+     
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-----  286 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-----  286 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----
Confidence            557889999999999999999999887643322211       23457889999999999999999999999983     


Q ss_pred             CCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114          264 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  343 (395)
Q Consensus       264 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  343 (395)
                         .|....+++.-|.++...|+++.|+..|++++++.     |++.   .+...|..+..+...+..+..++|.+++.-
T Consensus       287 ---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-----P~Nk---a~~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  287 ---DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-----PSNK---AARAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             ---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-----CCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence               56778899999999999999999999999999865     4443   344455555554444443556777776654


Q ss_pred             H
Q 016114          344 Q  344 (395)
Q Consensus       344 ~  344 (395)
                      .
T Consensus       356 ~  356 (397)
T KOG0543|consen  356 L  356 (397)
T ss_pred             c
Confidence            3

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.76  E-value=5.5e-06  Score=61.43  Aligned_cols=206  Identities=16%  Similarity=0.086  Sum_probs=134.9

Q ss_pred             ChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114           54 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  133 (395)
Q Consensus        54 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  133 (395)
                      .+...+..++..|..|-..|-+.-|.--|.+++.+        .|..+.+++.+|..+...|+|+.|.+.|...+++   
T Consensus        60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---  128 (297)
T COG4785          60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---  128 (297)
T ss_pred             ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---
Confidence            34567888899999999999999999999999987        6788899999999999999999999999999886   


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH-
Q 016114          134 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE-  212 (395)
Q Consensus       134 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-  212 (395)
                           +|..--+..|.|..++--|++.-|.+-+.+-.+.       .+.+|... .|..   +-...-++.+|...+.+ 
T Consensus       129 -----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-------D~~DPfR~-LWLY---l~E~k~dP~~A~tnL~qR  192 (297)
T COG4785         129 -----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-------DPNDPFRS-LWLY---LNEQKLDPKQAKTNLKQR  192 (297)
T ss_pred             -----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-------CCCChHHH-HHHH---HHHhhCCHHHHHHHHHHH
Confidence                 5665567788898999999999998887765542       34444322 1111   11233466677655433 


Q ss_pred             HHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHH
Q 016114          213 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  292 (395)
Q Consensus       213 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  292 (395)
                      +....+.     ...+..+-..+|.+       .+ ...++++....... ..-......++..||..+...|+.++|..
T Consensus       193 ~~~~d~e-----~WG~~iV~~yLgki-------S~-e~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~  258 (297)
T COG4785         193 AEKSDKE-----QWGWNIVEFYLGKI-------SE-ETLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATA  258 (297)
T ss_pred             HHhccHh-----hhhHHHHHHHHhhc-------cH-HHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            2221111     11111122222222       11 11222222211100 00011234578899999999999999999


Q ss_pred             HHHHHHHH
Q 016114          293 LVLEALYI  300 (395)
Q Consensus       293 ~~~~al~~  300 (395)
                      +|+-++.-
T Consensus       259 LfKLaian  266 (297)
T COG4785         259 LFKLAVAN  266 (297)
T ss_pred             HHHHHHHH
Confidence            99988763

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.75  E-value=7.7e-08  Score=59.01  Aligned_cols=60  Identities=25%  Similarity=0.230  Sum_probs=54.3

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          234 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       234 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      .+|..+...|++++|+..|++++.        .+|....++..+|.++..+|++++|+..|+++++..
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            578899999999999999999987        568899999999999999999999999999998754

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.75  E-value=1.7e-05  Score=61.04  Aligned_cols=170  Identities=16%  Similarity=0.096  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114          143 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  222 (395)
Q Consensus       143 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  222 (395)
                      +..+++-|......|++++|++.|+.....       .|..+....+...++..+.+.+++++|+...++-+...     
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-------~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----  101 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-------HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----  101 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----
Confidence            356778888889999999999999988753       45556667788899999999999999999999988764     


Q ss_pred             CCChhHHHHHHHHHHHHHhh-----hcH---HHHHHHHHHHHHHHHHhhCCCCcchHHH--------------HHHHHHH
Q 016114          223 KEHPSFVTHLLNLAASYSRS-----KNF---VEAERLLRICLDIMTKTVGPDDQSISFP--------------MLHLGIT  280 (395)
Q Consensus       223 ~~~~~~~~~~~~la~~~~~~-----~~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~--------------~~~la~~  280 (395)
                      +.+|+...+++..|.++...     .+.   .+|..-|+..+.   +.  |+++....+              -..+|..
T Consensus       102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~---ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~Iary  176 (254)
T COG4105         102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ---RY--PNSRYAPDAKARIVKLNDALAGHEMAIARY  176 (254)
T ss_pred             CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH---HC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777777777777766543     233   344444444443   22  333332222              2456889


Q ss_pred             HHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHH
Q 016114          281 LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE  335 (395)
Q Consensus       281 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~  335 (395)
                      |.+.|.+..|...++..++..     ++.+.+-.++..+..+|...|-.+ +|..
T Consensus       177 Y~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~-~a~~  225 (254)
T COG4105         177 YLKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTD-EAKK  225 (254)
T ss_pred             HHHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChH-HHHH
Confidence            999999999999999998876     555677788999999999999887 6643

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.74  E-value=1.3e-07  Score=63.49  Aligned_cols=96  Identities=26%  Similarity=0.390  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114           61 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  140 (395)
Q Consensus        61 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  140 (395)
                      ++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|..++++++...        |
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence            4677899999999999999999999876        23334778899999999999999999999998762        2


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      ....++..+|.++...|++++|...+.+++..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            22367889999999999999999999988764

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.72  E-value=7.1e-05  Score=67.43  Aligned_cols=265  Identities=14%  Similarity=0.059  Sum_probs=159.2

Q ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcC-CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114           62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRG-TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  140 (395)
Q Consensus        62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  140 (395)
                      ....++......++.+|.....++......... ......+...-.-|.+....|++++|+++.+.++......   ...
T Consensus       418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~~~  494 (894)
T COG2909         418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---AYR  494 (894)
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---cch
Confidence            344567778889999999999887766433110 1112233444455778889999999999999999875432   223


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q 016114          141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  220 (395)
Q Consensus       141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  220 (395)
                      ....++..+|.+..-.|++++|..+..++.++.+..    ........+....+.++..+|+...|.  -..+.......
T Consensus       495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~----~~~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~~q  568 (894)
T COG2909         495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH----DVYHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIREQ  568 (894)
T ss_pred             hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc----ccHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHH
Confidence            345677889999999999999999999999998763    223333445566788999999433222  22222222222


Q ss_pred             hCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114          221 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  300 (395)
Q Consensus       221 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  300 (395)
                      .....+.........+.++...-+++.+..-....+....... +......-.+..|+.+....|+.++|...+.+....
T Consensus       569 ~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l  647 (894)
T COG2909         569 HLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL  647 (894)
T ss_pred             HhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            1112222111122222333333336666666666655433221 111122223358999999999999999999888777


Q ss_pred             HHHHcCCCChHH-HHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114          301 REIAFGKDSLPV-GEALDCLVSIQTRLGEDDTKLLELLKR  339 (395)
Q Consensus       301 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~  339 (395)
                      ....  ..++.. +.+.......+..+|+.. +|.....+
T Consensus       648 ~~~~--~~~~~~~a~~~~v~~~lwl~qg~~~-~a~~~l~~  684 (894)
T COG2909         648 LLNG--QYHVDYLAAAYKVKLILWLAQGDKE-LAAEWLLK  684 (894)
T ss_pred             hcCC--CCCchHHHHHHHhhHHHhcccCCHH-HHHHHHHh
Confidence            6432  122222 233333344556677777 66555555

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.68  E-value=3.7e-06  Score=56.75  Aligned_cols=99  Identities=19%  Similarity=0.172  Sum_probs=86.9

Q ss_pred             HHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCc
Q 016114          104 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  183 (395)
Q Consensus       104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  183 (395)
                      +-.-|......|+.+.|++.|.+++.++        |..+.+|++.+..+.-+|+.++|+.-+++++++.      ++..
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa------g~~t  111 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA------GDQT  111 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc------Cccc
Confidence            3445778889999999999999999884        5567899999999999999999999999999984      4556


Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          184 SIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                      .....++...|.+|..+|+.+.|..-|+.+-++
T Consensus       112 rtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  112 RTACQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             hHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            677788899999999999999999999988776

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.67  E-value=0.0001  Score=60.04  Aligned_cols=255  Identities=18%  Similarity=0.091  Sum_probs=144.3

Q ss_pred             HHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHh---cccCCCC-chHH
Q 016114          112 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRVIKD---SNYMSLD-DSIM  186 (395)
Q Consensus       112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~---~~~~~~~-~~~~  186 (395)
                      ...|+++.|..++.++-.......+......+..+++.|......+ ++++|..+++++.+++..   .....++ ....
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            4689999999999999877642211122247778899999999999 999999999999999744   1112222 2456


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC
Q 016114          187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  266 (395)
Q Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  266 (395)
                      ..++..++.+|...+.++...+ ..++++..+...+ ++|...   ..--.+..+.++.+++.+.+.+++.-.      +
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~---~L~l~il~~~~~~~~~~~~L~~mi~~~------~  152 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF---LLKLEILLKSFDEEEYEEILMRMIRSV------D  152 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH---HHHHHHHhccCChhHHHHHHHHHHHhc------c
Confidence            6778899999999888765444 3344444444332 333322   112233333788888888888887621      1


Q ss_pred             Cc-chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHcCC--ch-hHHHHHHHHHH
Q 016114          267 DQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP-VGEALDCLVSIQTRLGE--DD-TKLLELLKRVL  341 (395)
Q Consensus       267 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~-~~A~~~~~~al  341 (395)
                      .+ ...........-+. ......|...+...+...   +.+. ++ ..... .+..++...+.  .. .+-++-.+..+
T Consensus       153 ~~e~~~~~~l~~i~~l~-~~~~~~a~~~ld~~l~~r---~~~~-~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~~~  226 (278)
T PF08631_consen  153 HSESNFDSILHHIKQLA-EKSPELAAFCLDYLLLNR---FKSS-EDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEELL  226 (278)
T ss_pred             cccchHHHHHHHHHHHH-hhCcHHHHHHHHHHHHHH---hCCC-hhHHHHHH-HHHHHHHHcCCccccchhHHHHHHHHH
Confidence            11 11111111111122 233456666666655433   2111 22 22222 22333333322  11 01133444444


Q ss_pred             HHHHhcc-CCCCHHHH----HHHHHHHHHHHHhcchhhhchhhHHHH
Q 016114          342 RIQEREF-GSESEEVM----LTLKKVVSYLDKLGRKEEKFPLKKRLS  383 (395)
Q Consensus       342 ~~~~~~~-~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~  383 (395)
                      +...+.. ++-.+...    ..+.+.|.-.++.++|++|..+|+-++
T Consensus       227 ~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  227 SIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            4322222 22233332    344566888999999999999999776

It is also involved in sporulation [].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.66  E-value=1.5e-07  Score=57.67  Aligned_cols=59  Identities=19%  Similarity=0.381  Sum_probs=53.9

Q ss_pred             HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      .+|..+...|++++|+..|++++..        .|....++..+|.++..+|++++|+.+|+++++.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999874        6889999999999999999999999999999986

>PRK15331 chaperone protein SicA; Provisional

Probab=98.65  E-value=6.7e-07  Score=63.84  Aligned_cols=105  Identities=15%  Similarity=0.141  Sum_probs=85.7

Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114            9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   88 (395)
Q Consensus         9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   88 (395)
                      +..-+++.-...+..|.-++..|++++|..+|+-..-.     +   +...+.+..||.++..+++|++|+..|..+..+
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l  100 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----D---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL  100 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44556777788899999999999999999999765432     2   233446789999999999999999999998876


Q ss_pred             HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHH
Q 016114           89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK  129 (395)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  129 (395)
                      .        +..+...+..|.|+..+|+.+.|...|+.++.
T Consensus       101 ~--------~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        101 L--------KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             c--------cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            2        23345578899999999999999999999986

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.63  E-value=1.2e-06  Score=67.90  Aligned_cols=102  Identities=23%  Similarity=0.239  Sum_probs=91.6

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 016114          232 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP  311 (395)
Q Consensus       232 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  311 (395)
                      .++.|.-+...|+|..|...|..-++.     .++++....+++.||.+++.+|+++.|...|..+.+-+     |++|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence            678888889999999999999988873     36778889999999999999999999999999988855     77788


Q ss_pred             HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 016114          312 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ  344 (395)
Q Consensus       312 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~  344 (395)
                      ..+++..||.+...+|+.+ +|...|+++++-+
T Consensus       214 ApdallKlg~~~~~l~~~d-~A~atl~qv~k~Y  245 (262)
T COG1729         214 APDALLKLGVSLGRLGNTD-EACATLQQVIKRY  245 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHC
Confidence            8889999999999999999 9999999998765

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.63  E-value=1.3e-06  Score=58.96  Aligned_cols=104  Identities=16%  Similarity=0.155  Sum_probs=89.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCH
Q 016114          274 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE  353 (395)
Q Consensus       274 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  353 (395)
                      +..-|......|+.+.|++.|.+++.+.        |..+.+|++-+..+.-+|+.+ +|++-+.+++++.    |+...
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e-~ALdDLn~AleLa----g~~tr  112 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDE-EALDDLNKALELA----GDQTR  112 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChH-HHHHHHHHHHHhc----Cccch
Confidence            3445777888999999999999999876        556678999999999999999 9999999999874    44555


Q ss_pred             HHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          354 EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       354 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                      ....++..-|.+|..+|+.+.|..-|+.+.+++.++.
T Consensus       113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA  149 (175)
T KOG4555|consen  113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA  149 (175)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence            5667888999999999999999999999999887764

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.63  E-value=3.4e-05  Score=59.46  Aligned_cols=174  Identities=12%  Similarity=0.059  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC
Q 016114          187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  266 (395)
Q Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  266 (395)
                      ...+.+-|......|++++|+..|+.....     .+..|..-.+...++..+.+.+++++|+...++-+...     +.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~  103 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PT  103 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CC
Confidence            345577888888999999999999987642     23445556788899999999999999999999988753     67


Q ss_pred             CcchHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHHcCCCChHHH--------------HHHHHHHHHHHHcC
Q 016114          267 DQSISFPMLHLGITLYHL-----NRDKEAEKLVLEALYIREIAFGKDSLPVG--------------EALDCLVSIQTRLG  327 (395)
Q Consensus       267 ~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~  327 (395)
                      ||+...+++..|.++...     .|...+...+...-+...+-  |+++-..              .--..+|..|.+.|
T Consensus       104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~  181 (254)
T COG4105         104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG  181 (254)
T ss_pred             CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888888888888887653     33333333333333332222  3333221              11234789999999


Q ss_pred             CchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchh
Q 016114          328 EDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPL  378 (395)
Q Consensus       328 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  378 (395)
                      .+. .|+..++.+++-++     +.+...+++..+...|..+|-.++|...
T Consensus       182 ~~~-AA~nR~~~v~e~y~-----~t~~~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         182 AYV-AAINRFEEVLENYP-----DTSAVREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             ChH-HHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHhCChHHHHHH
Confidence            999 99999999987653     4566678899999999999999998764

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.61  E-value=2.4e-05  Score=60.34  Aligned_cols=242  Identities=14%  Similarity=0.110  Sum_probs=163.0

Q ss_pred             hCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 016114           72 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  151 (395)
Q Consensus        72 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  151 (395)
                      ..+.++|+.-|++++++-    |.....-..++-.+..+++.+|++++-...|.+.+...+.....+....  +.+++-.
T Consensus        40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlD  113 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILD  113 (440)
T ss_pred             ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHH
Confidence            347899999999999873    2233344567888899999999999999999999988777654443331  2223323


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh----h
Q 016114          152 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP----S  227 (395)
Q Consensus       152 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~  227 (395)
                      .-....+.+--..+|+..++..+..    .+...+......+|.+|+..|.|.+-.+.+++.-..++...|.++.    .
T Consensus       114 yiStS~~m~LLQ~FYeTTL~ALkdA----KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ  189 (440)
T KOG1464|consen  114 YISTSKNMDLLQEFYETTLDALKDA----KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ  189 (440)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHhh----hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch
Confidence            2334455566667777777766543    3444445555779999999999999888888777666655554432    3


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Q 016114          228 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP-MLHLGITLYHLNRDKEAEKLVLEALYIREIAFG  306 (395)
Q Consensus       228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  306 (395)
                      ...++..-..+|..+.+..+-..+|++++.+...+   .||.+..+ ...=|..+.+.|+|++|-.-|=+|..-+.+.-.
T Consensus       190 LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs  266 (440)
T KOG1464|consen  190 LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS  266 (440)
T ss_pred             hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCC
Confidence            44455555678888888888889999999875544   35544333 233466788889999998888777776655322


Q ss_pred             CCChHHHHHHHHHHHHHHHcC
Q 016114          307 KDSLPVGEALDCLVSIQTRLG  327 (395)
Q Consensus       307 ~~~~~~~~~~~~l~~~~~~~~  327 (395)
                      | ......-+..||..+.+.|
T Consensus       267 p-RRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  267 P-RRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             c-chhHHHHHHHHHHHHHHcC
Confidence            2 2223333556777777665

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.59  E-value=2.7e-07  Score=71.33  Aligned_cols=105  Identities=17%  Similarity=0.119  Sum_probs=93.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCH
Q 016114          274 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE  353 (395)
Q Consensus       274 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  353 (395)
                      .++.|.-+...|+|..|...|..-++.+     |+.+....++++||.++..+|+++ .|...|..+..-+     +.+|
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~-~Aa~~f~~~~k~~-----P~s~  212 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYE-DAAYIFARVVKDY-----PKSP  212 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccch-HHHHHHHHHHHhC-----CCCC
Confidence            6788888999999999999999988866     777888899999999999999999 9999999988754     5677


Q ss_pred             HHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          354 EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       354 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      ...++++.||.+...+|+.++|...++++++-.++.
T Consensus       213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            778999999999999999999999999998766543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.56  E-value=9.4e-06  Score=71.46  Aligned_cols=136  Identities=13%  Similarity=0.052  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHH-HHHHHHHHHHHHHhcC-
Q 016114           20 LLHMGSMYSTL---ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA-VEIYHRVITILELNRG-   94 (395)
Q Consensus        20 ~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~al~~~~~~~~-   94 (395)
                      ++..|..+...   ++...|+.+|++++++        +|..+.++..++.++.....+... .....++.+...+... 
T Consensus       342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al  413 (517)
T PRK10153        342 LFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL  413 (517)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence            45566666544   4588999999999986        355566666666666544333210 0111222222211111 


Q ss_pred             CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114           95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus        95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      +..+....++..+|......|++++|...+++|+.+        .|. ..++..+|.++...|++++|+..|++|+.+
T Consensus       414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            123334567888898999999999999999999987        243 578999999999999999999999999985

>PRK15331 chaperone protein SicA; Provisional

Probab=98.54  E-value=1.3e-06  Score=62.36  Aligned_cols=101  Identities=12%  Similarity=0.068  Sum_probs=84.7

Q ss_pred             hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114           55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  134 (395)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  134 (395)
                      ++...+..+..|.-++..|++++|..+|+-....        ++.....+..||.++..+++|++|+..|..+..+.   
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~---  101 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL---  101 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence            4567788889999999999999999999876543        44556678999999999999999999999998763   


Q ss_pred             hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114          135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  171 (395)
Q Consensus       135 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  171 (395)
                        .++|.   ..+..|.++...|+.+.|...|+.+++
T Consensus       102 --~~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        102 --KNDYR---PVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             --cCCCC---ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence              23342   367789999999999999999999987

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.49  E-value=0.0001  Score=56.99  Aligned_cols=242  Identities=18%  Similarity=0.153  Sum_probs=153.4

Q ss_pred             cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHH
Q 016114          114 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL  193 (395)
Q Consensus       114 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l  193 (395)
                      ..++++|+.-|++++++-    |.....-..++..+..+++.+|++++-...|.+.+...+..  ...+..  ..+.+++
T Consensus        40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA--VTrNyS--EKsIN~I  111 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA--VTRNYS--EKSINSI  111 (440)
T ss_pred             ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH--Hhcccc--HHHHHHH
Confidence            347899999999999873    33334456788889999999999999999999998876643  111111  1111222


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC----cc
Q 016114          194 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD----QS  269 (395)
Q Consensus       194 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----~~  269 (395)
                      -..-....+.+--...|+..++..+...  +...+..+-..||.+|...++|.+-...+.+.-..++.-.|.++    ..
T Consensus       112 lDyiStS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ  189 (440)
T KOG1464|consen  112 LDYISTSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ  189 (440)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch
Confidence            2222233444444556666555544432  22333344557899999999999988888777665555444432    23


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHH-HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhcc
Q 016114          270 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGE-ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF  348 (395)
Q Consensus       270 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~  348 (395)
                      ...++..-...|..+.+..+-..+|++++.+...+   .||...- +..+=|..+.+.|+++ +|..-|=+|..-+.+.-
T Consensus       190 LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHlreg~fe-~AhTDFFEAFKNYDEsG  265 (440)
T KOG1464|consen  190 LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHLREGEFE-KAHTDFFEAFKNYDESG  265 (440)
T ss_pred             hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccccccchHH-HHHhHHHHHHhcccccC
Confidence            34455555677888888888889999999876544   4454432 2333466788889998 78777777776665532


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhc
Q 016114          349 GSESEEVMLTLKKVVSYLDKLG  370 (395)
Q Consensus       349 ~~~~~~~~~~~~~la~~~~~~g  370 (395)
                      .+ .....--+..||.++.+.|
T Consensus       266 sp-RRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  266 SP-RRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             Cc-chhHHHHHHHHHHHHHHcC
Confidence            11 1222233455666666654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.48  E-value=1.1e-05  Score=71.01  Aligned_cols=132  Identities=13%  Similarity=0.123  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHhhC---chhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChH--------HHHHHHHHHH
Q 016114           60 TSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV--------DAESVFSRIL  128 (395)
Q Consensus        60 ~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al  128 (395)
                      .-++..|..+...+   +...|+.+|++++++        +|+.+.++..++.++.....+.        .+.....+++
T Consensus       340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            33445566665544   478999999999987        6788888888777775543332        2222222222


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHH
Q 016114          129 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE  208 (395)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  208 (395)
                      .+      +..+....++..+|......|++++|...+++|+.+       .++    ...+..+|.++...|++++|++
T Consensus       412 al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-------~ps----~~a~~~lG~~~~~~G~~~eA~~  474 (517)
T PRK10153        412 AL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-------EMS----WLNYVLLGKVYELKGDNRLAAD  474 (517)
T ss_pred             hc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCC----HHHHHHHHHHHHHcCCHHHHHH
Confidence            21      112333467778888888999999999999999985       221    4578899999999999999999


Q ss_pred             HHHHHHHH
Q 016114          209 LLEECLLI  216 (395)
Q Consensus       209 ~~~~al~~  216 (395)
                      .|++|+.+
T Consensus       475 ~~~~A~~L  482 (517)
T PRK10153        475 AYSTAFNL  482 (517)
T ss_pred             HHHHHHhc
Confidence            99999886

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.47  E-value=7.3e-05  Score=54.26  Aligned_cols=132  Identities=12%  Similarity=0.011  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC
Q 016114          229 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  308 (395)
Q Consensus       229 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  308 (395)
                      ..-...||....+.|++.+|...|++++.       .--......+..+++..+..+++..|...+++..+.-..   ..
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qals-------G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa---~r  158 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALS-------GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA---FR  158 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhc-------cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc---cC
Confidence            34566789999999999999999999876       222334556788899999999999999888887664311   11


Q ss_pred             ChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHH
Q 016114          309 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  383 (395)
Q Consensus       309 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  383 (395)
                      .|   .....++.++...|.+. .|...|+.++..+.     +    .......+..+.++|+.++|..-+....
T Consensus       159 ~p---d~~Ll~aR~laa~g~~a-~Aesafe~a~~~yp-----g----~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         159 SP---DGHLLFARTLAAQGKYA-DAESAFEVAISYYP-----G----PQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             CC---CchHHHHHHHHhcCCch-hHHHHHHHHHHhCC-----C----HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            22   23567889999999998 89999999987642     1    2344556788889998888877655544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=2.1e-05  Score=61.99  Aligned_cols=103  Identities=18%  Similarity=0.218  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcC---ChHHHHHHHHHHHHHH
Q 016114           55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIY  131 (395)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~  131 (395)
                      +|..++-|..||.+|...|+++.|...|.+++++        .++....+..+|.++..+.   ...++...+.+++.. 
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-  222 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-  222 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence            3556778889999999999999999999999998        4556677777888776654   356788999999876 


Q ss_pred             HHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114          132 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus       132 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                             +|....+...||..++..|+|.+|...++..++..
T Consensus       223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence                   56667889999999999999999999999999864

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.45  E-value=0.0005  Score=56.07  Aligned_cols=255  Identities=17%  Similarity=0.149  Sum_probs=145.8

Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC-chhHHHHHHHHHHHHHHHh-c-CCCC----hh
Q 016114           27 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELN-R-GTES----AD   99 (395)
Q Consensus        27 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~-~-~~~~----~~   99 (395)
                      ...+|+++.|..++.++-.......+......+..+++.|......+ ++++|..+++++.++.... . ...+    ..
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            35789999999999999887643222333467888999999999999 9999999999999997551 1 1122    23


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  179 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  179 (395)
                      ...++..++.+|...+.++...+ ..++++..+...+ ++|.+..  ..+ .+....++.+++.+.+.+++....-    
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~--L~l-~il~~~~~~~~~~~~L~~mi~~~~~----  153 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFL--LKL-EILLKSFDEEEYEEILMRMIRSVDH----  153 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHH--HHH-HHHhccCChhHHHHHHHHHHHhccc----
Confidence            46678889999999988765444 4455555544432 3343321  122 2223388899999999988875321    


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChh-HHHHHHHHHHHHHhhh--cHHHH--HHHHHH
Q 016114          180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSK--NFVEA--ERLLRI  254 (395)
Q Consensus       180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~--~~~~A--~~~~~~  254 (395)
                       ++.+ ...+ .....-+.. .....+...+...+...-.    ..++ ..... -+..++...+  +....  ++....
T Consensus       154 -~e~~-~~~~-l~~i~~l~~-~~~~~a~~~ld~~l~~r~~----~~~~~~~e~~-vl~~~~~~~~~~~~~~~~~i~~l~~  224 (278)
T PF08631_consen  154 -SESN-FDSI-LHHIKQLAE-KSPELAAFCLDYLLLNRFK----SSEDQWLEKL-VLTRVLLTTQSKDLSSSEKIESLEE  224 (278)
T ss_pred             -ccch-HHHH-HHHHHHHHh-hCcHHHHHHHHHHHHHHhC----CChhHHHHHH-HHHHHHHHcCCccccchhHHHHHHH
Confidence             1111 1111 111111122 2345666666665543211    1121 22211 1222222222  22222  333444


Q ss_pred             HHHHHHHhhC-CCCcchH----HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114          255 CLDIMTKTVG-PDDQSIS----FPMLHLGITLYHLNRDKEAEKLVLEALY  299 (395)
Q Consensus       255 a~~~~~~~~~-~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~  299 (395)
                      .++...+..+ +-++...    ..+.+.|.-.+..++|++|..+|+-++.
T Consensus       225 ~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  225 LLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            4443333322 2222222    2345668888999999999999997763

It is also involved in sporulation [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=9.9e-06  Score=63.76  Aligned_cols=115  Identities=17%  Similarity=0.248  Sum_probs=91.0

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC---chhHHHHHHHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITI   88 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~   88 (395)
                      .+|..+.-|..||.+|+..|+++.|...|.+|+++.     ++++   ..+..+|.++....   ...++...+++++..
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n~---~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~  222 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-----GDNP---EILLGLAEALYYQAGQQMTAKARALLRQALAL  222 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence            467777889999999999999999999999999983     3334   44556676665543   457889999999886


Q ss_pred             HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 016114           89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  146 (395)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  146 (395)
                              +|....+.+.||..++..|+|.+|...++..++..    +++.|....+-
T Consensus       223 --------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie  268 (287)
T COG4235         223 --------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIE  268 (287)
T ss_pred             --------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHH
Confidence                    67778899999999999999999999999998863    44555544333

>PRK11906 transcriptional regulator; Provisional

Probab=98.45  E-value=1.6e-05  Score=66.66  Aligned_cols=161  Identities=17%  Similarity=0.081  Sum_probs=114.8

Q ss_pred             HHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh---C------chhHHHHHHHHHHHH
Q 016114           21 LHMGSMYSTLE---NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---G------RAKKAVEIYHRVITI   88 (395)
Q Consensus        21 ~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g------~~~~A~~~~~~al~~   88 (395)
                      +..|......+   ..+.|+.+|.+++...     +-+|..+.++..++.++...   |      ...+|....++|+++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel  333 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI  333 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence            55555554443   4567888888888431     23567788888888887654   2      234555666666655


Q ss_pred             HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 016114           89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  168 (395)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  168 (395)
                              ++..+.++..+|.+....++++.|...|++|+.+        +|..+.++...|.+....|+.++|.+.+++
T Consensus       334 --------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        334 --------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             --------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                    5667788999999999999999999999999987        688888999999999999999999999999


Q ss_pred             HHHHHHhcccCCCCchHHHHHHHHHHH-HHHHcCChHHHHHHHHH
Q 016114          169 ALRVIKDSNYMSLDDSIMENMRIDLAE-LLHIVGRGQEGRELLEE  212 (395)
Q Consensus       169 a~~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~  212 (395)
                      ++++.       |.  ........+-. .|+ ....+.|+.+|-+
T Consensus       398 alrLs-------P~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  432 (458)
T PRK11906        398 SLQLE-------PR--RRKAVVIKECVDMYV-PNPLKNNIKLYYK  432 (458)
T ss_pred             HhccC-------ch--hhHHHHHHHHHHHHc-CCchhhhHHHHhh
Confidence            99852       22  22222223333 343 4456777777644

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.45  E-value=0.00098  Score=59.22  Aligned_cols=211  Identities=13%  Similarity=0.046  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHH------HHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 016114          146 MCSLAHAKCANGNAEEAVELYKK------ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  219 (395)
Q Consensus       146 ~~~la~~~~~~g~~~~A~~~~~~------a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  219 (395)
                      |-.-|.+|.+..++++|+++|++      ++++.+-     .-+..+...-...|.-+...|+++.|+..|-++-...+.
T Consensus       664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarf-----afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka  738 (1636)
T KOG3616|consen  664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF-----AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA  738 (1636)
T ss_pred             HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-----hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence            44556777778888888888775      4444332     122333344456788888899999998887654332211


Q ss_pred             h---hCC-CChh-------------HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHH
Q 016114          220 Y---KGK-EHPS-------------FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY  282 (395)
Q Consensus       220 ~---~~~-~~~~-------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  282 (395)
                      .   .+. ..+.             ....+-.++.-|...|+|+-|.++|.++-..                ..-...|-
T Consensus       739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~----------------~dai~my~  802 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF----------------KDAIDMYG  802 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh----------------HHHHHHHh
Confidence            1   000 0111             1112334566666777777777766554210                11123455


Q ss_pred             hcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH------HHHHHHHHhc---------
Q 016114          283 HLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL------KRVLRIQERE---------  347 (395)
Q Consensus       283 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~------~~al~~~~~~---------  347 (395)
                      +.|+|..|.++-++..       ++  ..+...+..-+.-....|++. +|..+|      .++++++.+.         
T Consensus       803 k~~kw~da~kla~e~~-------~~--e~t~~~yiakaedldehgkf~-eaeqlyiti~~p~~aiqmydk~~~~ddmirl  872 (1636)
T KOG3616|consen  803 KAGKWEDAFKLAEECH-------GP--EATISLYIAKAEDLDEHGKFA-EAEQLYITIGEPDKAIQMYDKHGLDDDMIRL  872 (1636)
T ss_pred             ccccHHHHHHHHHHhc-------Cc--hhHHHHHHHhHHhHHhhcchh-hhhheeEEccCchHHHHHHHhhCcchHHHHH
Confidence            6666666655544332       22  223334444444455555554 444333      2333333321         


Q ss_pred             cCCCCHH-HHHHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114          348 FGSESEE-VMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  387 (395)
Q Consensus       348 ~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  387 (395)
                      .+..|++ ..++...+|.-|...|+..+|...|-++-+...
T Consensus       873 v~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~ka  913 (1636)
T KOG3616|consen  873 VEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKA  913 (1636)
T ss_pred             HHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHH
Confidence            1122332 346778889999999999999998887765543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.45  E-value=1.1e-05  Score=67.79  Aligned_cols=119  Identities=24%  Similarity=0.164  Sum_probs=97.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchH
Q 016114          192 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS  271 (395)
Q Consensus       192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  271 (395)
                      .+..++...++++.|+.++++..+        ..|.   +...++.++...++-.+|+..+.+++.        ..|...
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~--------~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~--------~~p~d~  234 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRE--------RDPE---VAVLLARVYLLMNEEVEAIRLLNEALK--------ENPQDS  234 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHh--------cCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHH--------hCCCCH
Confidence            355666677899999999888654        2344   344588999999999999999999986        345567


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHH
Q 016114          272 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK  338 (395)
Q Consensus       272 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  338 (395)
                      ..+...+..+...++++.|++..+++....        |....+|..|+.+|...|+++ .|+..+.
T Consensus       235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e-~ALlaLN  292 (395)
T PF09295_consen  235 ELLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFE-NALLALN  292 (395)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHH-HHHHHHh
Confidence            888889999999999999999999999865        667788999999999999999 8886654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.43  E-value=1.2e-05  Score=67.67  Aligned_cols=120  Identities=11%  Similarity=0.081  Sum_probs=98.6

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhh
Q 016114           23 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  102 (395)
Q Consensus        23 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  102 (395)
                      +-.++...++++.|+.++++..+.        +|.   +...++.++...++-.+|+..+.+++..        .|....
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~  235 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE  235 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence            445566678899999998886542        233   3445789999999999999999999853        455578


Q ss_pred             hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016114          103 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  169 (395)
Q Consensus       103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  169 (395)
                      .+...+..+...++++.|+...+++...        .|....+|..|+.+|...|+++.|+-.++.+
T Consensus       236 LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  236 LLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            8888999999999999999999999987        5777789999999999999999999877643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=0.0003  Score=54.88  Aligned_cols=229  Identities=14%  Similarity=0.146  Sum_probs=147.4

Q ss_pred             HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114           64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  143 (395)
Q Consensus        64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  143 (395)
                      .+++-....+++++|+..|.+.+.---........+.-.+...++.+|...|++..--+.....-+.....   ..|...
T Consensus         8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f---tk~k~~   84 (421)
T COG5159           8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF---TKPKIT   84 (421)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh---cchhHH
Confidence            34566667788899998888877531000001112334567789999999999887666665555544443   234444


Q ss_pred             HHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114          144 MAMCSLAHA-KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  222 (395)
Q Consensus       144 ~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  222 (395)
                      .+...+-.- -.....++.-+..+...++...+.    .........-..+...+...|+|.+|+......+.-.++.. 
T Consensus        85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE----kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D-  159 (421)
T COG5159          85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE----KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD-  159 (421)
T ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc-
Confidence            444333332 234567788888888888876542    11112223335678899999999999999998888777654 


Q ss_pred             CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          223 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS-FPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       223 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                       +.+.....+..-..+|....+..++...+..|.......+-|  |... ..-..-|.....-.+|..|..+|-++++-+
T Consensus       160 -DK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP--pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf  236 (421)
T COG5159         160 -DKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP--PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF  236 (421)
T ss_pred             -CccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--HHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence             455566666667788888899999888887776655444322  2221 111222555667789999999999998876


Q ss_pred             HH
Q 016114          302 EI  303 (395)
Q Consensus       302 ~~  303 (395)
                      ..
T Consensus       237 t~  238 (421)
T COG5159         237 TL  238 (421)
T ss_pred             cc
Confidence            43

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.38  E-value=0.00012  Score=53.10  Aligned_cols=136  Identities=19%  Similarity=0.182  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114           59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      ..-...+|......|++.+|...|++++.-       -.......+..++...+..+++..|...+++..+....     
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG-------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-----  156 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSG-------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-----  156 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-----
Confidence            344667899999999999999999999863       12334567788999999999999999999988765211     


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114          139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  218 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  218 (395)
                       .........+|..+...|++.+|...|+.++...       |+..    .....+..+..+|+.++|..-+....+...
T Consensus       157 -~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-------pg~~----ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~  224 (251)
T COG4700         157 -FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY-------PGPQ----ARIYYAEMLAKQGRLREANAQYVAVVDTAK  224 (251)
T ss_pred             -cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-------CCHH----HHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence             1123345668999999999999999999999864       2221    223467788899999998887776655443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.38  E-value=2.7e-05  Score=54.47  Aligned_cols=104  Identities=14%  Similarity=0.103  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC
Q 016114          188 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD  267 (395)
Q Consensus       188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  267 (395)
                      ..+..-|......|+|++|++.++......     +..+....+...|+.+|...+++++|+..+++.+++     .+.|
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~h   80 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPTH   80 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC
Confidence            345778999999999999999998765542     234555678889999999999999999999999884     4788


Q ss_pred             cchHHHHHHHHHHHHhcCC---------------hHHHHHHHHHHHHHH
Q 016114          268 QSISFPMLHLGITLYHLNR---------------DKEAEKLVLEALYIR  301 (395)
Q Consensus       268 ~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~  301 (395)
                      |.+..+++..|.++..+..               ...|...|++.++.+
T Consensus        81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y  129 (142)
T PF13512_consen   81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY  129 (142)
T ss_pred             CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence            9999999999999988766               666777776666654

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.37  E-value=1.7e-05  Score=55.51  Aligned_cols=90  Identities=17%  Similarity=0.015  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC
Q 016114          229 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  308 (395)
Q Consensus       229 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  308 (395)
                      ...++.-|.-.+..|+|++|++.|+.....+     +..+....+...|+.+|+..|++++|+..+++-+++.     |.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~   79 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PT   79 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence            3457788888999999999999998776522     4456667888999999999999999999999999876     89


Q ss_pred             ChHHHHHHHHHHHHHHHcCC
Q 016114          309 SLPVGEALDCLVSIQTRLGE  328 (395)
Q Consensus       309 ~~~~~~~~~~l~~~~~~~~~  328 (395)
                      ||.+.-+++..|.++..+..
T Consensus        80 hp~vdYa~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   80 HPNVDYAYYMRGLSYYEQDE   99 (142)
T ss_pred             CCCccHHHHHHHHHHHHHhh
Confidence            99988899999988887754

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=0.00055  Score=52.97  Aligned_cols=243  Identities=17%  Similarity=0.162  Sum_probs=140.7

Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHh
Q 016114           27 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS  106 (395)
Q Consensus        27 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  106 (395)
                      ++..|+|..++..-.+.-..         +........+.+.|..+|.+...+.-...         +. .+. ..+...
T Consensus        18 ~fY~Gnyq~~ine~~~~~~~---------~~~~e~d~y~~raylAlg~~~~~~~eI~~---------~~-~~~-lqAvr~   77 (299)
T KOG3081|consen   18 YFYLGNYQQCINEAEKFSSS---------KTDVELDVYMYRAYLALGQYQIVISEIKE---------GK-ATP-LQAVRL   77 (299)
T ss_pred             HHHhhHHHHHHHHHHhhccc---------cchhHHHHHHHHHHHHccccccccccccc---------cc-CCh-HHHHHH
Confidence            44578887777655443211         12334455667788888877654432211         11 111 122333


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHH
Q 016114          107 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM  186 (395)
Q Consensus       107 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  186 (395)
                      ++.....-++.++-+.-..+-+.      +............-|.+|...|++++|++.......+              
T Consensus        78 ~a~~~~~e~~~~~~~~~l~E~~a------~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l--------------  137 (299)
T KOG3081|consen   78 LAEYLELESNKKSILASLYELVA------DSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL--------------  137 (299)
T ss_pred             HHHHhhCcchhHHHHHHHHHHHH------hhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH--------------
Confidence            34433333333333322222221      1112222234455678899999999999988773322              


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh----hcHHHHHHHHHHHHHHHHHh
Q 016114          187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS----KNFVEAERLLRICLDIMTKT  262 (395)
Q Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~a~~~~~~~  262 (395)
                       .+...-..++.+..+.+-|++.+++..++.+.          .++..||..+...    ++..+|.-+|++.-+     
T Consensus       138 -E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided----------~tLtQLA~awv~la~ggek~qdAfyifeE~s~-----  201 (299)
T KOG3081|consen  138 -EAAALNVQILLKMHRFDLAEKELKKMQQIDED----------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-----  201 (299)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH----------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-----
Confidence             11122345677788888888888887765321          2344455554432    346666666655432     


Q ss_pred             hCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114          263 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  337 (395)
Q Consensus       263 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  337 (395)
                         ..+.+...+..++.++..+|++++|...++.++...        +....++.++..+-...|... ++.+-+
T Consensus       202 ---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--------~~dpetL~Nliv~a~~~Gkd~-~~~~r~  264 (299)
T KOG3081|consen  202 ---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--------AKDPETLANLIVLALHLGKDA-EVTERN  264 (299)
T ss_pred             ---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCCCh-HHHHHH
Confidence               235566788899999999999999999999998743        333456788888888889886 444433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.37  E-value=3.8e-06  Score=70.25  Aligned_cols=72  Identities=19%  Similarity=0.250  Sum_probs=63.4

Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      ..|.....++++|..|...|++++|+..|++++++     .++++....+++++|.+|..+|++++|+..+++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            46788899999999999999999999999999998     3334333367999999999999999999999999986

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=0.00056  Score=52.89  Aligned_cols=153  Identities=20%  Similarity=0.137  Sum_probs=106.4

Q ss_pred             hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114          102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  181 (395)
Q Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  181 (395)
                      .....-|.+|.+-|++++|+........+             .+...--.++.+..+.+-|...++++.++...      
T Consensus       109 i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------  169 (299)
T KOG3081|consen  109 IDLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED------  169 (299)
T ss_pred             HHHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH------
Confidence            34445578899999999999988763322             22222345677888899999988888776332      


Q ss_pred             CchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          182 DDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       182 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                        .    ++..||..+..    .+++.+|.-+|++.-+        ..+.+...++.++.+++.+|++++|...++.++.
T Consensus       170 --~----tLtQLA~awv~la~ggek~qdAfyifeE~s~--------k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~  235 (299)
T KOG3081|consen  170 --A----TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--------KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD  235 (299)
T ss_pred             --H----HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--------ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence              1    22344544443    3456667666665322        1334556788899999999999999999999997


Q ss_pred             HHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHH
Q 016114          258 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  295 (395)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  295 (395)
                              ..+....++.++..+-...|...++..-+-
T Consensus       236 --------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l  265 (299)
T KOG3081|consen  236 --------KDAKDPETLANLIVLALHLGKDAEVTERNL  265 (299)
T ss_pred             --------ccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence                    345557788888888889998877765443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=0.00018  Score=55.39  Aligned_cols=140  Identities=21%  Similarity=0.213  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114           59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      ..+.+.+..++.-.|+|.-+...+.+.++.       +++........||.+.++.|+.+.|..+|+++-+...+..+  
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--  247 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--  247 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--
Confidence            445667788888899999999999988774       45666677888999999999999999999987766555422  


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114          139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  217 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  217 (395)
                      -.....+..+.+.+|...+++.+|...+.+++..       .+..   ..+.++.|.|....|+..+|++.++.++++.
T Consensus       248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~-------D~~~---~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM-------DPRN---AVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             cchhHHHHhhhhhheecccchHHHHHHHhhcccc-------CCCc---hhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            2234456788899999999999999999988763       1222   2334789999999999999999999888763

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.33  E-value=1.3e-06  Score=48.01  Aligned_cols=41  Identities=32%  Similarity=0.279  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 016114          271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP  311 (395)
Q Consensus       271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  311 (395)
                      +.++.++|.+|..+|++++|..++++++.+.+..+|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            46789999999999999999999999999999999999985

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.33  E-value=2.4e-05  Score=57.35  Aligned_cols=103  Identities=17%  Similarity=0.126  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      +..+-.-|+-++..|+|++|..-|..|+.+++..   .......++.+.|.+...++.++.|+.-+.+++++        
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~---~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------  163 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPST---STEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------  163 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccc---cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------
Confidence            4456677899999999999999999999998654   22456667889999999999999999999999998        


Q ss_pred             ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      .|....++...+.+|..+.+|++|+.-|.+.++.
T Consensus       164 ~pty~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  164 NPTYEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            5677788888999999999999999999999876

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.33  E-value=4.7e-06  Score=69.69  Aligned_cols=72  Identities=14%  Similarity=0.160  Sum_probs=63.6

Q ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       138 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                      ..|.....++++|..|...|+|++|+..|++++++       .|++.....+++|+|.+|..+|++++|+..+++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35678889999999999999999999999999996       4555544466899999999999999999999999986

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.33  E-value=0.00012  Score=61.39  Aligned_cols=320  Identities=11%  Similarity=0.046  Sum_probs=175.3

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh-------
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN-------   92 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------   92 (395)
                      +...+..-+..+.|+...++.+..-.+.+     ++..+.  ++.--..|+..|.+... ...++...+....       
T Consensus        20 l~~~a~~~f~~~~~d~cl~~l~~l~t~~~-----~~~~v~--~n~av~~~~kt~~tq~~-~ll~el~aL~~~~~~~~~~~   91 (696)
T KOG2471|consen   20 LLCQAHEQFNNSEFDRCLELLQELETRGE-----SSGPVL--HNRAVVSYYKTGCTQHS-VLLKELEALTADADAPGDVS   91 (696)
T ss_pred             HHHHHHhccCCcchHHHHHHHHHHHhccc-----ccccee--eehhhHHHHhcccchhH-HHHHHHHHHHHhhccccchh
Confidence            45566667788899988887766544321     111111  22222334444443322 2222222221111       


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      .+-+.......+++.|.++.....+..|+..........+...   ....+......-.++....+.++|+.++.-.-++
T Consensus        92 ~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le---~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~  168 (696)
T KOG2471|consen   92 SGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLE---SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEI  168 (696)
T ss_pred             cchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122233345677888899989999999988777766554331   1222223333445566666777787766544333


Q ss_pred             HHhc--ccCCCC----------chHHH-----------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHH
Q 016114          173 IKDS--NYMSLD----------DSIME-----------NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  229 (395)
Q Consensus       173 ~~~~--~~~~~~----------~~~~~-----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  229 (395)
                      ....  ...+..          ++..+           .+...-...+....+..-+..-.+.++.+.        .+..
T Consensus       169 ~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a--------~~s~  240 (696)
T KOG2471|consen  169 EAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA--------QDSS  240 (696)
T ss_pred             HHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc--------CCCc
Confidence            2211  001100          00000           000111111222222222222222221111        1233


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc--hHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHcC
Q 016114          230 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS--ISFPMLHLGITLYHLNRDKEAEKLVLEALY-IREIAFG  306 (395)
Q Consensus       230 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~  306 (395)
                      .++...+..+...|++.+|.+.+... .+.+...+...|.  ....+.++|-+++..|.+.-+..+|.+|++ ...+...
T Consensus       241 ~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~  319 (696)
T KOG2471|consen  241 MALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN  319 (696)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence            45666788889999999999887643 2222222222232  233457999999999999999999999996 3333321


Q ss_pred             C---C------ChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 016114          307 K---D------SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK  368 (395)
Q Consensus       307 ~---~------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  368 (395)
                      .   .      ......++++.|..+...|++. .|.++|.+++..+..     +   +..|..+|.++..
T Consensus       320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl-~AfqCf~~av~vfh~-----n---PrlWLRlAEcCim  381 (696)
T KOG2471|consen  320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPL-LAFQCFQKAVHVFHR-----N---PRLWLRLAECCIM  381 (696)
T ss_pred             cCCCCcceehhcccchhhHHhhhHHHHhcCCcH-HHHHHHHHHHHHHhc-----C---cHHHHHHHHHHHH
Confidence            1   1      1123567899999999999999 999999999998865     2   3567788887754

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=0.00074  Score=52.17  Aligned_cols=139  Identities=17%  Similarity=0.163  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114          144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  223 (395)
Q Consensus       144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  223 (395)
                      .+.+.+..++...|.|.-....+.+.++.      .++..+.+   ...+|.+....|+.+.|..+++..-+...+..  
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~------~~e~~p~L---~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~--  246 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY------YPEQEPQL---LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD--  246 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHh------CCcccHHH---HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh--
Confidence            45677888899999999999999998873      22333333   36789999999999999999997765544443  


Q ss_pred             CChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          224 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       224 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      +-.....+..+.+.+|.-.+++.+|...+.+.+.        .++..+.+.++-|.|..-.|+...|++..+.++.+.
T Consensus       247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~--------~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR--------MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             ccchhHHHHhhhhhheecccchHHHHHHHhhccc--------cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            2233455677889999999999999999988776        355666777889999999999999999998887754

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.29  E-value=4.3e-05  Score=56.09  Aligned_cols=100  Identities=18%  Similarity=0.206  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114          145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  224 (395)
Q Consensus       145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  224 (395)
                      .+-.-|.-++..|+|++|..-|..|++++...     .......++.+.|.+...++.++.|+.-..+++++        
T Consensus        97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~-----~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------  163 (271)
T KOG4234|consen   97 SLKKEGNELFKNGDYEEANSKYQEALESCPST-----STEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------  163 (271)
T ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHHhCccc-----cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------
Confidence            44556788899999999999999999987532     33555677889999999999999999999999986        


Q ss_pred             ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                      .|....++...|.+|.+...+++|++-|.+.++
T Consensus       164 ~pty~kAl~RRAeayek~ek~eealeDyKki~E  196 (271)
T KOG4234|consen  164 NPTYEKALERRAEAYEKMEKYEEALEDYKKILE  196 (271)
T ss_pred             CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            466677888889999999999999999999887

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.26  E-value=0.0012  Score=52.90  Aligned_cols=206  Identities=22%  Similarity=0.288  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      .......+..+...+++..+...+......      ...+.....+...+..+...+++..+...+..++...       
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  125 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD-------  125 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC-------
Confidence            345566777888888888888888877653      1123455667778888888888888888888877642       


Q ss_pred             ChhhhhhHHhHHH-HHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114           97 SADLVLPLFSLGS-LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus        97 ~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                       +.........+. ++...|+++.|...+.+++...     +............+..+...++++.|+..+.+++.....
T Consensus       126 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         126 -PDPDLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             -CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence             111222333344 8889999999999999995521     101234455666666688889999999999999886432


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114          176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  255 (395)
Q Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  255 (395)
                            .   ....+..++..+...+++++|...+..++....        .....+..++..+...+.++++...+.++
T Consensus       200 ------~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (291)
T COG0457         200 ------D---DAEALLNLGLLYLKLGKYEEALEYYEKALELDP--------DNAEALYNLALLLLELGRYEEALEALEKA  262 (291)
T ss_pred             ------c---chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc--------ccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence                  0   244557888999999999999999998887532        13344556666666777789999888888


Q ss_pred             HHH
Q 016114          256 LDI  258 (395)
Q Consensus       256 ~~~  258 (395)
                      +..
T Consensus       263 ~~~  265 (291)
T COG0457         263 LEL  265 (291)
T ss_pred             HHh
Confidence            773

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.23  E-value=3.2e-06  Score=46.40  Aligned_cols=41  Identities=34%  Similarity=0.520  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc
Q 016114          229 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  269 (395)
Q Consensus       229 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  269 (395)
                      +.++.++|.+|..+|++++|..++++++.+.++.+|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            46789999999999999999999999999999999999874

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.22  E-value=0.0019  Score=52.97  Aligned_cols=299  Identities=13%  Similarity=0.053  Sum_probs=187.4

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh-h
Q 016114           23 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL-V  101 (395)
Q Consensus        23 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~  101 (395)
                      -|.+-...|+-..|..+-.++-.+...    +.+-.+..  .-+..-...|+++.|.+-|+..+.         +|+. .
T Consensus        90 tGliAagAGda~lARkmt~~~~~llss----DqepLIhl--LeAQaal~eG~~~~Ar~kfeAMl~---------dPEtRl  154 (531)
T COG3898          90 TGLIAAGAGDASLARKMTARASKLLSS----DQEPLIHL--LEAQAALLEGDYEDARKKFEAMLD---------DPETRL  154 (531)
T ss_pred             hhhhhhccCchHHHHHHHHHHHhhhhc----cchHHHHH--HHHHHHHhcCchHHHHHHHHHHhc---------ChHHHH
Confidence            344555667777888777777655432    22333322  235556678999999999987764         2332 2


Q ss_pred             hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114          102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  181 (395)
Q Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  181 (395)
                      --+..|-.--...|..+.|..+-+++....        |....+....-...+..|+++.|+++.+.......    .++
T Consensus       155 lGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v----ie~  222 (531)
T COG3898         155 LGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV----IEK  222 (531)
T ss_pred             HhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh----hch
Confidence            223333334457899999999999887763        33334444444566789999999999987765432    122


Q ss_pred             CchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 016114          182 DDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT  260 (395)
Q Consensus       182 ~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  260 (395)
                      +......+-..-+.... ...+...|...-.++.++        .|+.+..-..-+..+...|+..++-.+++.+.+.  
T Consensus       223 ~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--  292 (531)
T COG3898         223 DVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--  292 (531)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--
Confidence            22221111111122221 123567777777777665        3444455556688899999999999999988773  


Q ss_pred             HhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 016114          261 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV  340 (395)
Q Consensus       261 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a  340 (395)
                          ..||.+..       +|....--+.++.-++++-.+.     .-.++...+....+..-...|++. .|..--+.+
T Consensus       293 ----ePHP~ia~-------lY~~ar~gdta~dRlkRa~~L~-----slk~nnaes~~~va~aAlda~e~~-~ARa~Aeaa  355 (531)
T COG3898         293 ----EPHPDIAL-------LYVRARSGDTALDRLKRAKKLE-----SLKPNNAESSLAVAEAALDAGEFS-AARAKAEAA  355 (531)
T ss_pred             ----CCChHHHH-------HHHHhcCCCcHHHHHHHHHHHH-----hcCccchHHHHHHHHHHHhccchH-HHHHHHHHH
Confidence                35666544       3444444445666666665543     223555667778888888889888 777766666


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHHh-cchhhhchhhHHHHH
Q 016114          341 LRIQEREFGSESEEVMLTLKKVVSYLDKL-GRKEEKFPLKKRLSN  384 (395)
Q Consensus       341 l~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~  384 (395)
                      ..+.        | ...++..|+.+-... |+-.++..++-+++.
T Consensus       356 ~r~~--------p-res~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         356 AREA--------P-RESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             hhhC--------c-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            6532        1 134567778887765 898888888888764

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.20  E-value=7.4e-06  Score=50.68  Aligned_cols=53  Identities=23%  Similarity=0.354  Sum_probs=47.1

Q ss_pred             HhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           70 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        70 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      ...|++++|+..|++++..        .|....+...+|.++...|++++|...+.+++..
T Consensus         2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5689999999999999987        6777888999999999999999999999998865

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.20  E-value=7.6e-06  Score=50.60  Aligned_cols=54  Identities=22%  Similarity=0.171  Sum_probs=46.9

Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          240 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       240 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      ...|++++|+..|++++..        +|....++..+|.++...|++++|...+++++...
T Consensus         2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            5789999999999999883        57778888999999999999999999999987743

...

>PRK11906 transcriptional regulator; Provisional

Probab=98.19  E-value=6.9e-05  Score=63.07  Aligned_cols=133  Identities=15%  Similarity=0.149  Sum_probs=100.1

Q ss_pred             CCcHHHHHHHHHHHHHHHhh---------hcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHH
Q 016114           11 DDEPLLDAILLHMGSMYSTL---------ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI   81 (395)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~   81 (395)
                      +.+|..+.+|..++.+++..         .+..+|....++|+++     +   +..+.++..+|.+....|+++.|...
T Consensus       289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel-----d---~~Da~a~~~~g~~~~~~~~~~~a~~~  360 (458)
T PRK11906        289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI-----T---TVDGKILAIMGLITGLSGQAKVSHIL  360 (458)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc-----C---CCCHHHHHHHHHHHHhhcchhhHHHH
Confidence            66788888888888887754         2344566666666665     2   34456788899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHH-HHHHCCCH
Q 016114           82 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAH-AKCANGNA  159 (395)
Q Consensus        82 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~-~~~~~g~~  159 (395)
                      |++|+.+        +|+.+.+++..|.+....|+.++|...+++++++        +|. .......+-. .|+ ....
T Consensus       361 f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--------sP~~~~~~~~~~~~~~~~-~~~~  423 (458)
T PRK11906        361 FEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--------EPRRRKAVVIKECVDMYV-PNPL  423 (458)
T ss_pred             HHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------CchhhHHHHHHHHHHHHc-CCch
Confidence            9999987        7888999999999999999999999999999987        333 2223333333 333 4556


Q ss_pred             HHHHHHHHH
Q 016114          160 EEAVELYKK  168 (395)
Q Consensus       160 ~~A~~~~~~  168 (395)
                      ++|+.+|-+
T Consensus       424 ~~~~~~~~~  432 (458)
T PRK11906        424 KNNIKLYYK  432 (458)
T ss_pred             hhhHHHHhh
Confidence            777776644

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.19  E-value=0.0038  Score=54.95  Aligned_cols=178  Identities=16%  Similarity=0.072  Sum_probs=118.4

Q ss_pred             HCCCHHHHHHHHHHHHHHHHhcccCCCCchHH---HHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChh
Q 016114          155 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIM---ENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPS  227 (395)
Q Consensus       155 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~  227 (395)
                      -.|+-+.++..+.++.+.      .+...+..   .-.|+.....+..    ....+.|.+.+......        .|.
T Consensus       200 F~gdR~~GL~~L~~~~~~------~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~  265 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKS------ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPN  265 (468)
T ss_pred             cCCcHHHHHHHHHHHhcc------CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCC
Confidence            468888899988887651      11222221   1112222222222    23445566666655543        456


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114          228 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  307 (395)
Q Consensus       228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  307 (395)
                      ....+...|+++...|+.++|++.+++++....+.    ..-...++..++.++..+++|++|..++.+..+.       
T Consensus       266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------  334 (468)
T PF10300_consen  266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------  334 (468)
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------
Confidence            66677889999999999999999999988533222    1123456789999999999999999999888762       


Q ss_pred             CChHHHHHHHHHHHHHHHcCCc-------hhHHHHHHHHHHHHHHhccCCCCHHHHHH
Q 016114          308 DSLPVGEALDCLVSIQTRLGED-------DTKLLELLKRVLRIQEREFGSESEEVMLT  358 (395)
Q Consensus       308 ~~~~~~~~~~~l~~~~~~~~~~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~  358 (395)
                      +....+...+..|.++...|+.       + +|.+++.++-.+..+..+...|-..-+
T Consensus       335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~-~a~~l~~~vp~l~~k~~gk~lp~E~Fv  391 (468)
T PF10300_consen  335 SKWSKAFYAYLAAACLLMLGREEEAKEHKK-EAEELFRKVPKLKQKKAGKSLPLEKFV  391 (468)
T ss_pred             cccHHHHHHHHHHHHHHhhccchhhhhhHH-HHHHHHHHHHHHHhhhccCCCChHHHH
Confidence            2233444566788899999988       7 888899988888877666555543333

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.19  E-value=1.6e-05  Score=49.95  Aligned_cols=59  Identities=25%  Similarity=0.295  Sum_probs=52.4

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          235 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       235 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      |..+|...+++++|+.++++++.+        +|.....+...|.++...|++.+|...++++++..
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            356789999999999999999984        56677788999999999999999999999999754

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.18  E-value=1.9e-05  Score=49.64  Aligned_cols=57  Identities=14%  Similarity=0.190  Sum_probs=52.4

Q ss_pred             HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      ..+|...+++++|+..+++++.+        +|.....+...|.++..+|++.+|...++++++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            56788999999999999999987        5667888999999999999999999999999976

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.17  E-value=0.00097  Score=58.57  Aligned_cols=175  Identities=19%  Similarity=0.126  Sum_probs=115.7

Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhcCcChHHH---HHHHHHHHHHHHh----hCchhHHHHHHHHHHHHHHHhcCCCChhhh
Q 016114           29 TLENYEKSMLVYQRVINVLESRYGKTSILL---VTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELNRGTESADLV  101 (395)
Q Consensus        29 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  101 (395)
                      -.||-+.++..+.++.+- .   +-..|..   .-.++.....+..    ....+.|.+.+......        .|.-.
T Consensus       200 F~gdR~~GL~~L~~~~~~-~---~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~  267 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKS-E---NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSA  267 (468)
T ss_pred             cCCcHHHHHHHHHHHhcc-C---CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcH
Confidence            347888888888877541 1   1112211   1112221111211    23445566666555543        46667


Q ss_pred             hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114          102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  181 (395)
Q Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  181 (395)
                      ..+...|.++...|+.++|++.+++++......    ..-....+..++.++..+.+|++|..++.+..+..        
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--------  335 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--------  335 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--------
Confidence            778889999999999999999999988543222    12234568899999999999999999999987732        


Q ss_pred             CchHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHhhhCCCChhH
Q 016114          182 DDSIMENMRIDLAELLHIVGRG-------QEGRELLEECLLITEKYKGKEHPSF  228 (395)
Q Consensus       182 ~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~  228 (395)
                       ....+...+..|.++...|+.       ++|..++.++-....+..+...|..
T Consensus       336 -~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E  388 (468)
T PF10300_consen  336 -KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLE  388 (468)
T ss_pred             -ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChH
Confidence             222334446788999999999       8888888888777766555444543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=0.0016  Score=52.26  Aligned_cols=166  Identities=13%  Similarity=0.092  Sum_probs=116.8

Q ss_pred             HHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 016114           65 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  144 (395)
Q Consensus        65 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  144 (395)
                      -+.+....|++.+|...+.+.++-        .|....+...--..++..|+.......+++.+...    .++-|-...
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sY  176 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSY  176 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHH
Confidence            345566788999988888887763        45445555555677888898888888888776432    234454455


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114          145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  224 (395)
Q Consensus       145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  224 (395)
                      ....++..+...|-|++|.+..++++++.+       .+   ..+...++.++...|++.++.+...+.-...+.    .
T Consensus       177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN~-------~D---~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s  242 (491)
T KOG2610|consen  177 VHGMYAFGLEECGIYDDAEKQADRALQINR-------FD---CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----S  242 (491)
T ss_pred             HHHHHHhhHHHhccchhHHHHHHhhccCCC-------cc---hHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----h
Confidence            666778888999999999999999988632       22   233466888999999999999988775443321    1


Q ss_pred             ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114          225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICL  256 (395)
Q Consensus       225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  256 (395)
                      ......-+-..|.++...+.++.|+++|..-+
T Consensus       243 ~mlasHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  243 WMLASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             hHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            11223334566788888899999999997643

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.08  E-value=0.00094  Score=44.54  Aligned_cols=122  Identities=16%  Similarity=0.183  Sum_probs=86.7

Q ss_pred             hhhHHhHHH--HHHHcCChHHHHHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114          101 VLPLFSLGS--LFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  174 (395)
Q Consensus       101 ~~~~~~l~~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  174 (395)
                      +.+|..|+.  -...-|-|++|...+.+++++.+.+.....-    -.+.++..|+..+..+|+|++++....+++..+.
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            344444443  3455688999999999999997765332211    1456778899999999999999999999999887


Q ss_pred             hcccCCCC-chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114          175 DSNYMSLD-DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  222 (395)
Q Consensus       175 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  222 (395)
                      +......+ -..+..+..+.+..+...|+.++|+..|+.+-++..+..|
T Consensus        87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG  135 (144)
T PF12968_consen   87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG  135 (144)
T ss_dssp             HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred             hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence            75434443 2445566688999999999999999999999888765544

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=98.08  E-value=0.0053  Score=52.44  Aligned_cols=285  Identities=15%  Similarity=0.075  Sum_probs=153.3

Q ss_pred             HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHH
Q 016114           66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGM  144 (395)
Q Consensus        66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~  144 (395)
                      +.+....|+++.-..+....           ..........-+......++++++..+.+++.............. ...
T Consensus         5 ~eaaWrl~~Wd~l~~~~~~~-----------~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~   73 (352)
T PF02259_consen    5 AEAAWRLGDWDLLEEYLSQS-----------NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQR   73 (352)
T ss_pred             HHHHHhcCChhhHHHHHhhc-----------cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            45667888888733322211           111113334445555588999999999999887755433221111 112


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC--
Q 016114          145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG--  222 (395)
Q Consensus       145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--  222 (395)
                      .+..+..+ ....+.+++..+.....          ........+..   .--.+...........+..+........  
T Consensus        74 ~y~~l~~l-q~L~Elee~~~~~~~~~----------~~~~~~~~l~~---~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~  139 (352)
T PF02259_consen   74 AYPSLVKL-QQLVELEEIIELKSNLS----------QNPQDLKSLLK---RWRSRLPNMQDDFSVWEPILSLRRLVLSLI  139 (352)
T ss_pred             HHHHHHHH-hHHHHHHHHHHHHHhhc----------ccHHHHHHHHH---HHHHHHHHhccchHHHHHHHHHHHHHHhcc
Confidence            22222211 12222333333321110          00111111100   0001111112223334444444333332  


Q ss_pred             CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HH
Q 016114          223 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY-IR  301 (395)
Q Consensus       223 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~  301 (395)
                      .........+..++.+..+.|+++.|...+.++.....    ........+....+.+....|+..+|+..++..+. ..
T Consensus       140 ~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~----~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~  215 (352)
T PF02259_consen  140 LLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP----SSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL  215 (352)
T ss_pred             cchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC----cccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            11445677889999999999999999999988765211    11112344566778999999999999999988887 22


Q ss_pred             HHHc-------------------------CCCChHHHHHHHHHHHHHHHc------CCchhHHHHHHHHHHHHHHhccCC
Q 016114          302 EIAF-------------------------GKDSLPVGEALDCLVSIQTRL------GEDDTKLLELLKRVLRIQEREFGS  350 (395)
Q Consensus       302 ~~~~-------------------------~~~~~~~~~~~~~l~~~~~~~------~~~~~~A~~~~~~al~~~~~~~~~  350 (395)
                      ....                         .......+.++..+|......      +..+ ++...|++++.+       
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~-~~~~~~~~a~~~-------  287 (352)
T PF02259_consen  216 SKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSD-EILKYYKEATKL-------  287 (352)
T ss_pred             hhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHH-HHHHHHHHHHHh-------
Confidence            2210                         011133455666677776666      6666 788888888875       


Q ss_pred             CCHHHHHHHHHHHHHHHHhcch-----------------hhhchhhHHHHHHHHH
Q 016114          351 ESEEVMLTLKKVVSYLDKLGRK-----------------EEKFPLKKRLSNLRMK  388 (395)
Q Consensus       351 ~~~~~~~~~~~la~~~~~~g~~-----------------~~A~~~~~~a~~~~~~  388 (395)
                       .|....++..+|..+...=+.                 ..|+..|-+++..+++
T Consensus       288 -~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  288 -DPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             -ChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence             344456777777766554221                 2356666666665554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.04  E-value=0.0042  Score=49.97  Aligned_cols=165  Identities=13%  Similarity=0.001  Sum_probs=123.5

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHH
Q 016114          108 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME  187 (395)
Q Consensus       108 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  187 (395)
                      +.+....|++.+|-...++.++-        .|....+...--..++..|+...-...+++.+..      -+++.|...
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~------wn~dlp~~s  175 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK------WNADLPCYS  175 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc------cCCCCcHHH
Confidence            44566788999998888888764        5555555555667788899998888888887653      246667777


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC
Q 016114          188 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD  267 (395)
Q Consensus       188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  267 (395)
                      .+....+..+...|-|++|++..++++++        ++....+...++.++...|++.++.++..+.-+..+..    .
T Consensus       176 Yv~GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~  243 (491)
T KOG2610|consen  176 YVHGMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----W  243 (491)
T ss_pred             HHHHHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----h
Confidence            77778899999999999999999999986        34456677788999999999999999887654433211    1


Q ss_pred             cchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016114          268 QSISFPMLHLGITLYHLNRDKEAEKLVLEAL  298 (395)
Q Consensus       268 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  298 (395)
                      ......|..-|.++...+.++.|++.|.+-+
T Consensus       244 mlasHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  244 MLASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            1122334556788888899999999998654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.04  E-value=0.0041  Score=49.76  Aligned_cols=230  Identities=27%  Similarity=0.337  Sum_probs=161.7

Q ss_pred             hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHH
Q 016114           30 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  109 (395)
Q Consensus        30 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  109 (395)
                      .+.+..+...+...+.....      ..........+..+...+.+..+...+......      ...+.....+...+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  103 (291)
T COG0457          36 LGELAEALELLEEALELLPN------SDLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGL  103 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHH
Confidence            34555555555555443211      012455667788899999999999999888764      124566677888899


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHH
Q 016114          110 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH-AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN  188 (395)
Q Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  188 (395)
                      .+...+++..+...+.+++....      .+  .......+. ++...|+++.|...+.+++...       +.......
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~  168 (291)
T COG0457         104 LLEALGKYEEALELLEKALALDP------DP--DLAEALLALGALYELGDYEEALELYEKALELD-------PELNELAE  168 (291)
T ss_pred             HHHHHhhHHHHHHHHHHHHcCCC------Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCccchHH
Confidence            99999999999999988876421      11  122233333 8999999999999999995521       11112233


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCc
Q 016114          189 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  268 (395)
Q Consensus       189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  268 (395)
                      .....+..+...++++.++..+.+++......       ....+..++..+...++++.|...+..++...        +
T Consensus       169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~  233 (291)
T COG0457         169 ALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELD--------P  233 (291)
T ss_pred             HHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------c
Confidence            44556666888899999999999988863221       45667888999999999999999999988742        2


Q ss_pred             chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          269 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       269 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      .....+..++..+...+.++++...+.+++...
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (291)
T COG0457         234 DNAEALYNLALLLLELGRYEEALEALEKALELD  266 (291)
T ss_pred             ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            244556677777777778999999988887754

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.03  E-value=0.0051  Score=50.59  Aligned_cols=279  Identities=15%  Similarity=0.070  Sum_probs=178.8

Q ss_pred             hhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHH
Q 016114            7 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI   86 (395)
Q Consensus         7 ~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   86 (395)
                      ..+..+.+.+..++  -+..-...|+++.|.+-|+-++.-        .....--+..|-.--...|..+.|..+-+++.
T Consensus       112 ~llssDqepLIhlL--eAQaal~eG~~~~Ar~kfeAMl~d--------PEtRllGLRgLyleAqr~GareaAr~yAe~Aa  181 (531)
T COG3898         112 KLLSSDQEPLIHLL--EAQAALLEGDYEDARKKFEAMLDD--------PETRLLGLRGLYLEAQRLGAREAARHYAERAA  181 (531)
T ss_pred             hhhhccchHHHHHH--HHHHHHhcCchHHHHHHHHHHhcC--------hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            34555655555443  355566789999999999887642        12222233444444567899999999999887


Q ss_pred             HHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-HHCCCHHHHHHH
Q 016114           87 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK-CANGNAEEAVEL  165 (395)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~  165 (395)
                      ..        .|....+....-......|+++.|+++.+......  ..+++..+...+-..-+... ....+...|...
T Consensus       182 ~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~  251 (531)
T COG3898         182 EK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAERSRAVLLTAKAMSLLDADPASARDD  251 (531)
T ss_pred             hh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            75        34555555555566778999999999998776542  22222222222221112211 223457778887


Q ss_pred             HHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcH
Q 016114          166 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF  245 (395)
Q Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  245 (395)
                      ..++.++.       ++.   .-.-..-+..++..|+..++-.+++.+.+.      ..||+....       |....--
T Consensus       252 A~~a~KL~-------pdl---vPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~l-------Y~~ar~g  308 (531)
T COG3898         252 ALEANKLA-------PDL---VPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIALL-------YVRARSG  308 (531)
T ss_pred             HHHHhhcC-------Ccc---chHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHHH-------HHHhcCC
Confidence            77777753       221   112244678999999999999999887663      256665443       4443334


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 016114          246 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR  325 (395)
Q Consensus       246 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~  325 (395)
                      +.+..-++++-.+.     .-.|+........+..-...|++..|..--+.+..+.        | ....+..|+.+-..
T Consensus       309 dta~dRlkRa~~L~-----slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~--------p-res~~lLlAdIeeA  374 (531)
T COG3898         309 DTALDRLKRAKKLE-----SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA--------P-RESAYLLLADIEEA  374 (531)
T ss_pred             CcHHHHHHHHHHHH-----hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC--------c-hhhHHHHHHHHHhh
Confidence            45566666665532     2245666777888999999999999988877776543        1 22456778888766


Q ss_pred             c-CCchhHHHHHHHHHHHH
Q 016114          326 L-GEDDTKLLELLKRVLRI  343 (395)
Q Consensus       326 ~-~~~~~~A~~~~~~al~~  343 (395)
                      . |+.. +....+.+++..
T Consensus       375 etGDqg-~vR~wlAqav~A  392 (531)
T COG3898         375 ETGDQG-KVRQWLAQAVKA  392 (531)
T ss_pred             ccCchH-HHHHHHHHHhcC
Confidence            5 8877 899999888863

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.99  E-value=0.00051  Score=57.82  Aligned_cols=245  Identities=12%  Similarity=0.003  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH----
Q 016114           59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV----  134 (395)
Q Consensus        59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----  134 (395)
                      ....++.|.+++....+.+|+..........+...   ....+......-..+....+.++|+.++.-.-.+....    
T Consensus       100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le---~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~  176 (696)
T KOG2471|consen  100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLE---SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKL  176 (696)
T ss_pred             hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            44577788888888899999888777666554432   11222333344455666677778877654333322111    


Q ss_pred             hC----------CCChhHHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHH
Q 016114          135 YG----------ENDGRVGMA-----------MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL  193 (395)
Q Consensus       135 ~~----------~~~~~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l  193 (395)
                      .|          ..+|..+..           ...-...+....+..-+..-.+.++.+.       .+.+   ......
T Consensus       177 ~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-------~~s~---~~l~LK  246 (696)
T KOG2471|consen  177 VGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-------QDSS---MALLLK  246 (696)
T ss_pred             cccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-------CCCc---HHHHHH
Confidence            01          001111110           1111112222223333333333332221       1222   223456


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChh--HHHHHHHHHHHHHhhhcHHHHHHHHHHHHH-HHHHhhCCCC---
Q 016114          194 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICLD-IMTKTVGPDD---  267 (395)
Q Consensus       194 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~---  267 (395)
                      +..++..|++.+|.+.+... .+.+...+.-.|.  ....++++|.++...|.+.-+..+|.+|+. ...+....-.   
T Consensus       247 sq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~  325 (696)
T KOG2471|consen  247 SQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK  325 (696)
T ss_pred             HHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence            78888999999999887643 2222222222333  334568999999999999999999999995 4333322111   


Q ss_pred             ------cchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 016114          268 ------QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR  325 (395)
Q Consensus       268 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~  325 (395)
                            .....++++.|..|...|++-.|.++|.++...+..     .|   ..|..++.++..
T Consensus       326 ~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~-----nP---rlWLRlAEcCim  381 (696)
T KOG2471|consen  326 TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR-----NP---RLWLRLAECCIM  381 (696)
T ss_pred             ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc-----Cc---HHHHHHHHHHHH
Confidence                  123457889999999999999999999999998743     23   346677777654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.99  E-value=0.0016  Score=43.44  Aligned_cols=118  Identities=16%  Similarity=0.115  Sum_probs=84.5

Q ss_pred             HHHHHHHHHH--HHHhhCchhHHHHHHHHHHHHHHHhcCCCChh----hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114           58 LVTSLLGMAK--VLGSIGRAKKAVEIYHRVITILELNRGTESAD----LVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  131 (395)
Q Consensus        58 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  131 (395)
                      ++.+|..|+.  -....|-|++|...++++.++.+.++.....+    .+.++..|+..+..+|+|++++....+++..+
T Consensus         6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF   85 (144)
T PF12968_consen    6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF   85 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            3444444443  34556899999999999999987765332211    24577789999999999999999999999988


Q ss_pred             HHHhCCCChh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114          132 TKVYGENDGR----VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  176 (395)
Q Consensus       132 ~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  176 (395)
                      .+.. .-+.+    .+.+.++.+..+...|+.++|+..|+.+-++....
T Consensus        86 NRRG-EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER  133 (144)
T PF12968_consen   86 NRRG-ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER  133 (144)
T ss_dssp             HHH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred             hhcc-ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            7763 22222    45566788999999999999999999999987654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.96  E-value=8.4e-05  Score=59.41  Aligned_cols=94  Identities=16%  Similarity=0.137  Sum_probs=82.9

Q ss_pred             HHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhH
Q 016114           63 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV  142 (395)
Q Consensus        63 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  142 (395)
                      -..|+-|+.+|.|++|+.+|.+++..        .|..+..+.+.+..|++..+|..|+.-+..|+.+        +...
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y  164 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLY  164 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHH
Confidence            45688999999999999999999876        5666778889999999999999999999999987        3445


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          143 GMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       143 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      ..+|...+..-..+|...+|.+-++.++++
T Consensus       165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  165 VKAYSRRMQARESLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence            678889999999999999999999999985

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.96  E-value=4.2e-05  Score=61.05  Aligned_cols=95  Identities=16%  Similarity=0.088  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      +-..|+-|+.+|.|++|+.+|.+++...        |.....+.+.+..|+....|..|+.-+..|+.+        +..
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~  163 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKL  163 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHH
Confidence            4567999999999999999999998863        333445678899999999999999999999987        345


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      ...+|...+..-..+|+..+|.+-++.++++
T Consensus       164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  164 YVKAYSRRMQARESLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence            6788999999999999999999999999987

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=0.0001  Score=55.76  Aligned_cols=103  Identities=16%  Similarity=0.188  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   95 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   95 (395)
                      .+.-+..-|+.++....|+.|+..|.+++.+        +|..+..+.+-+.++.+..+++.+..-..+++++       
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-------   73 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-------   73 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-------
Confidence            3444567788899999999999999999986        3566677888999999999999999999999997       


Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  134 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  134 (395)
                       .|..+..++.+|........|++|+..++++..+.+..
T Consensus        74 -~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   74 -DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             -ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence             67888999999999999999999999999999887664

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.92  E-value=0.0017  Score=47.23  Aligned_cols=111  Identities=14%  Similarity=0.181  Sum_probs=82.4

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcCh--------------HHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS--------------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRV   85 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   85 (395)
                      +...|......|+.+.++..+.+++.+.+..+-++.              .....+...++..+...|++++|+..++++
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~   88 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA   88 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            344566666778999999999999988754332221              134556777888889999999999999999


Q ss_pred             HHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114           86 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      +..        +|..-.++..+..++...|+..+|...|++......+-+|..
T Consensus        89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~  133 (146)
T PF03704_consen   89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE  133 (146)
T ss_dssp             HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred             Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence            987        677778889999999999999999999999999888766543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.86  E-value=0.005  Score=52.46  Aligned_cols=142  Identities=18%  Similarity=0.094  Sum_probs=78.9

Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHH
Q 016114          111 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  190 (395)
Q Consensus       111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  190 (395)
                      ..+..+...-++.-.+|+++        +|+.+.++..|+.  .......+|..+++++++..+..              
T Consensus       178 AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~--------------  233 (539)
T PF04184_consen  178 AWRERNPQARIKAAKEALEI--------NPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEAS--------------  233 (539)
T ss_pred             HHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHh--------------
Confidence            34555666677777777766        3555556655553  22334677788888877765432              


Q ss_pred             HHHHHHH--HHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCc
Q 016114          191 IDLAELL--HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  268 (395)
Q Consensus       191 ~~la~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  268 (395)
                        ++...  ...|..-+..  ..           .+......+...+|.+..+.|+.++|++.++..++..      ...
T Consensus       234 --lg~s~~~~~~g~~~e~~--~~-----------Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~  292 (539)
T PF04184_consen  234 --LGKSQFLQHHGHFWEAW--HR-----------RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNL  292 (539)
T ss_pred             --hchhhhhhcccchhhhh--hc-----------cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------Ccc
Confidence              11100  0111110000  00           0111123445567777788888888888777766521      112


Q ss_pred             chHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016114          269 SISFPMLHLGITLYHLNRDKEAEKLVLEA  297 (395)
Q Consensus       269 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a  297 (395)
                      +...+..+|..++...+.+.++...+.+-
T Consensus       293 ~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  293 DNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             chhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            34556777778888888887777666653

The molecular function of this protein is uncertain.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.84  E-value=0.0019  Score=47.06  Aligned_cols=109  Identities=23%  Similarity=0.153  Sum_probs=77.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC--C------------hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114          193 LAELLHIVGRGQEGRELLEECLLITEKYKGKE--H------------PSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  258 (395)
Q Consensus       193 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  258 (395)
                      .|......|+.+.++..+++++.++...+-++  .            .....+...++..+...|++++|+..+++++..
T Consensus        12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~   91 (146)
T PF03704_consen   12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL   91 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence            35555566788888888888887765332111  0            122345667788889999999999999999984


Q ss_pred             HHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCC
Q 016114          259 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  309 (395)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  309 (395)
                              +|..-.++..+..++...|+..+|...|++......+-+|...
T Consensus        92 --------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P  134 (146)
T PF03704_consen   92 --------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP  134 (146)
T ss_dssp             --------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred             --------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence                    6777788899999999999999999999999998887766544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.83  E-value=0.00028  Score=54.38  Aligned_cols=102  Identities=17%  Similarity=0.119  Sum_probs=80.0

Q ss_pred             hcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCC-----CHHHHH
Q 016114          283 HLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE-----SEEVML  357 (395)
Q Consensus       283 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~  357 (395)
                      ....+++|++.|.-|+-...- .+..+...+..+..+|.+|...|+.+ ....++++|++.+.+.+...     ..+...
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~-~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~  166 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEE-NEKRFLRKALEFYEEAYENEDFPIEGMDEAT  166 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHH-HHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence            345678899999888876543 34455577888899999999999977 78888888888777655322     235567


Q ss_pred             HHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114          358 TLKKVVSYLDKLGRKEEKFPLKKRLSNLR  386 (395)
Q Consensus       358 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~  386 (395)
                      +++.+|.+..+.|++++|..+|.+++...
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            88999999999999999999999988644

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.83  E-value=0.0015  Score=50.53  Aligned_cols=102  Identities=24%  Similarity=0.202  Sum_probs=81.6

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC-----Chh
Q 016114          153 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-----HPS  227 (395)
Q Consensus       153 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~  227 (395)
                      +.....+++|+..|.-|+-...-   .+.++...+.++..+|.+|...|+.+....++++|+..+.+.....     ..+
T Consensus        87 ~~~~Rt~~~ai~~YkLAll~~~~---~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~  163 (214)
T PF09986_consen   87 FSGERTLEEAIESYKLALLCAQI---KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD  163 (214)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence            34456788999999988877654   3456667788899999999999998888888888888877665322     224


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          228 FVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                      ....++.+|.+..+.|++++|..+|.+++.
T Consensus       164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~  193 (214)
T PF09986_consen  164 EATLLYLIGELNRRLGNYDEAKRWFSRVIG  193 (214)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence            566788999999999999999999999887

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00073  Score=51.58  Aligned_cols=107  Identities=15%  Similarity=0.165  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCc---ChH-------HHHHHHHHHHHHHHhhCchhHHHHHHHHH
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK---TSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRV   85 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   85 (395)
                      ...++..-|+-++..|+|.+|...|+.|+...+...-.   ..|       .....+.+.+.|+...|+|-++++.....
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            34567889999999999999999999999877655322   222       23456788999999999999999999988


Q ss_pred             HHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           86 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      +..        +|....+++..|......-+..+|..-|.+++++
T Consensus       257 L~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  257 LRH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             Hhc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            875        7888899999999999999999999999999986

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.81  E-value=0.0041  Score=45.98  Aligned_cols=100  Identities=17%  Similarity=0.047  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC
Q 016114          188 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD  267 (395)
Q Consensus       188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  267 (395)
                      .....++..+...|++++|+..++.++....     +......+-.+|+.+...+|.+++|...+.....         +
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~  155 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTIKE---------E  155 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------c
Confidence            3446788999999999999999999885421     2223445567899999999999999988765432         2


Q ss_pred             cchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          268 QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       268 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      ..........|.++...|+-++|+..|++++...
T Consensus       156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            2333445667999999999999999999999864

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.00017  Score=54.64  Aligned_cols=99  Identities=17%  Similarity=0.150  Sum_probs=88.6

Q ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 016114           62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  141 (395)
Q Consensus        62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  141 (395)
                      +..-|..++...+|..|+..|.+++.+        +|..+..+.+-+.++++..+++.+..-..+++++        .|.
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N   76 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPN   76 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChH
Confidence            444577788888999999999999886        6777788999999999999999999999999987        677


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114          142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  176 (395)
Q Consensus       142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  176 (395)
                      .+...+.+|........+++|+..+.++..+.+..
T Consensus        77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            88899999999999999999999999999998875

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.011  Score=46.44  Aligned_cols=228  Identities=14%  Similarity=0.095  Sum_probs=150.3

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh
Q 016114           21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  100 (395)
Q Consensus        21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  100 (395)
                      ..+++-....+++++|+..|.+.+.-............-.+...++.+|...|++..--+......+......   .|..
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k~k~   83 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---KPKI   83 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---chhH
Confidence            3466677788999999999998876411110011123345677899999999999877777666666554432   3444


Q ss_pred             hhhHHhHHHHH-HHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114          101 VLPLFSLGSLF-IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  179 (395)
Q Consensus       101 ~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  179 (395)
                      ..+...+-.-+ .....++.-+..+...++...+..  ...-....-..+..+++..|+|.+|+......+.-+++.   
T Consensus        84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk--r~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~---  158 (421)
T COG5159          84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK--RKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY---  158 (421)
T ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh---
Confidence            44444333322 234567777788888777765420  011122334567889999999999999999988877764   


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHH-HHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114          180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL-LNLAASYSRSKNFVEAERLLRICLDI  258 (395)
Q Consensus       180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~a~~~  258 (395)
                       .+.+.+..++..-..+|....+..++...+..|.......+  -+|....-+ ..-|..++...+|..|..+|-++++-
T Consensus       159 -DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y--CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         159 -DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY--CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             -cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC--CCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence             45556666777778899999999888888877766655444  223322212 22256667788999999999999874


Q ss_pred             H
Q 016114          259 M  259 (395)
Q Consensus       259 ~  259 (395)
                      +
T Consensus       236 f  236 (421)
T COG5159         236 F  236 (421)
T ss_pred             c
Confidence            4

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.77  E-value=0.0069  Score=44.83  Aligned_cols=137  Identities=20%  Similarity=0.208  Sum_probs=96.6

Q ss_pred             HHHHHHHhhhcHH---HHHHHHHHHHHHHHHhcC-----------c--ChHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Q 016114           22 HMGSMYSTLENYE---KSMLVYQRVINVLESRYG-----------K--TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV   85 (395)
Q Consensus        22 ~l~~~~~~~g~~~---~A~~~~~~al~~~~~~~~-----------~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   85 (395)
                      ..|+-|+...+.+   +|-..|++++........           .  ....-..+...++..+...|++++|+..++.+
T Consensus        36 lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~  115 (207)
T COG2976          36 LFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQA  115 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            4455666555444   677777777765432111           0  11122334556788899999999999999998


Q ss_pred             HHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 016114           86 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL  165 (395)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  165 (395)
                      +...     .|......+-.+|+.+...+|.+++|+..+....         ++..........|.++...|+-++|...
T Consensus       116 l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~~w~~~~~elrGDill~kg~k~~Ar~a  181 (207)
T COG2976         116 LAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK---------EESWAAIVAELRGDILLAKGDKQEARAA  181 (207)
T ss_pred             Hccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cccHHHHHHHHhhhHHHHcCchHHHHHH
Confidence            8652     2333445567789999999999999998877543         2333445566789999999999999999


Q ss_pred             HHHHHHH
Q 016114          166 YKKALRV  172 (395)
Q Consensus       166 ~~~a~~~  172 (395)
                      |+++++.
T Consensus       182 y~kAl~~  188 (207)
T COG2976         182 YEKALES  188 (207)
T ss_pred             HHHHHHc
Confidence            9999985

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.76  E-value=4e-05  Score=40.07  Aligned_cols=33  Identities=12%  Similarity=0.101  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          358 TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       358 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                      ++..||.+|..+|++++|+.+|++++.+.++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~   33 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE   33 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            467899999999999999999999998887654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.75  E-value=0.018  Score=48.16  Aligned_cols=207  Identities=13%  Similarity=0.139  Sum_probs=122.3

Q ss_pred             hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHH
Q 016114           30 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  109 (395)
Q Consensus        30 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  109 (395)
                      ...+..+..-..+.+...+..++...........++-..|....+|+.-+.+.+..-.+    ...+-+....+....|.
T Consensus       112 re~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yaf  187 (374)
T PF13281_consen  112 RERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAF  187 (374)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHH
Confidence            33444444445555555554444322233445556667788888888888777654433    11122334455667788


Q ss_pred             HHHH---cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHhcc
Q 016114          110 LFIK---EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---------NGNAEEAVELYKKALRVIKDSN  177 (395)
Q Consensus       110 ~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~~~~~a~~~~~~~~  177 (395)
                      ++.+   .|+.++|+..+..++..       .......++..+|.+|-.         ....++|+..|.++.++.    
T Consensus       188 ALnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~----  256 (374)
T PF13281_consen  188 ALNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE----  256 (374)
T ss_pred             HHhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC----
Confidence            8888   89999999999887543       233344567777777643         224677888888877642    


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHH---hhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114          178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL-LITE---KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  253 (395)
Q Consensus       178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~---~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  253 (395)
                         +  ...  .-.|++.++...|...+...-+++.. .+..   +....+.....+....++.+..-.|++++|.+.++
T Consensus       257 ---~--~~Y--~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e  329 (374)
T PF13281_consen  257 ---P--DYY--SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAE  329 (374)
T ss_pred             ---c--ccc--chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence               1  111  11567777777776444433333332 1111   11111222334555677888888999999999999


Q ss_pred             HHHHH
Q 016114          254 ICLDI  258 (395)
Q Consensus       254 ~a~~~  258 (395)
                      ++...
T Consensus       330 ~~~~l  334 (374)
T PF13281_consen  330 KAFKL  334 (374)
T ss_pred             HHhhc
Confidence            98873

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.74  E-value=0.029  Score=50.08  Aligned_cols=125  Identities=13%  Similarity=0.035  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHH-----HHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINV-----LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      ..|..++......-.++.|...|-++-+.     .++. +    ....--...+.+-.--|+|++|++.|-.+-..    
T Consensus       693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-~----~i~s~~~q~aei~~~~g~feeaek~yld~drr----  763 (1189)
T KOG2041|consen  693 RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-R----TIHSKEQQRAEISAFYGEFEEAEKLYLDADRR----  763 (1189)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-h----hhhhHHHHhHhHhhhhcchhHhhhhhhccchh----
Confidence            34556677666666677776666554221     1110 0    00000112344444557788887777543211    


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  169 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  169 (395)
                            +.+      ..++...|++-.-.++++..-      .+.++.....++.++|..+..+..+++|.++|...
T Consensus       764 ------DLA------ielr~klgDwfrV~qL~r~g~------~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  764 ------DLA------IELRKKLGDWFRVYQLIRNGG------SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             ------hhh------HHHHHhhhhHHHHHHHHHccC------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  111      123344455444333332210      01223335567777777777777777777777664

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.72  E-value=0.024  Score=48.54  Aligned_cols=128  Identities=17%  Similarity=0.154  Sum_probs=95.0

Q ss_pred             HHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh-------
Q 016114           68 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-------  140 (395)
Q Consensus        68 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------  140 (395)
                      -..+..+...-++.-.+|+++        .|+.+.+|..|+.-  ......+|+.+++++++..+..++.+..       
T Consensus       177 ~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~  246 (539)
T PF04184_consen  177 KAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHF  246 (539)
T ss_pred             HHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccch
Confidence            334566777888888888887        56777777776642  2344789999999999988776554311       


Q ss_pred             ----------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHH
Q 016114          141 ----------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL  210 (395)
Q Consensus       141 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  210 (395)
                                ....+...+|.+..+.|+.++|++.++..++..       + ......++.+|..++...+.|.++..++
T Consensus       247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-------p-~~~~l~IrenLie~LLelq~Yad~q~lL  318 (539)
T PF04184_consen  247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-------P-NLDNLNIRENLIEALLELQAYADVQALL  318 (539)
T ss_pred             hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-------C-ccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence                      123455779999999999999999999988742       1 2233557899999999999999999887


Q ss_pred             HHH
Q 016114          211 EEC  213 (395)
Q Consensus       211 ~~a  213 (395)
                      .+-
T Consensus       319 ~kY  321 (539)
T PF04184_consen  319 AKY  321 (539)
T ss_pred             HHh
Confidence            763

The molecular function of this protein is uncertain.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.70  E-value=0.023  Score=47.67  Aligned_cols=205  Identities=12%  Similarity=0.100  Sum_probs=118.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHH
Q 016114          116 KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE  195 (395)
Q Consensus       116 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~  195 (395)
                      .+..+.....+.+...+..++........+..++-..|....+|+.-+.+.+..-.+      +..+......+....|.
T Consensus       114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~------p~~~~~~~~~i~~~yaf  187 (374)
T PF13281_consen  114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL------PTCDVANQHNIKFQYAF  187 (374)
T ss_pred             HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc------CccchhcchHHHHHHHH
Confidence            344444555555555555443222223445566667788888988877777665443      11112223344567788


Q ss_pred             HHHH---cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh---------hcHHHHHHHHHHHHHHHHHhh
Q 016114          196 LLHI---VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS---------KNFVEAERLLRICLDIMTKTV  263 (395)
Q Consensus       196 ~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~~~~~  263 (395)
                      ++.+   .|+.++|+..+..++..       .......++..+|.+|...         ...++|+..|.++.++     
T Consensus       188 ALnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~-----  255 (374)
T PF13281_consen  188 ALNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI-----  255 (374)
T ss_pred             HHhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC-----
Confidence            8888   89999999998886543       2233345666778777543         2355666666666553     


Q ss_pred             CCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC----CChHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114          264 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK----DSLPVGEALDCLVSIQTRLGEDDTKLLELLKR  339 (395)
Q Consensus       264 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  339 (395)
                        + ++ ...-.|++.++...|...+...-.++.........+.    +..........++.+..-.|+++ +|...+++
T Consensus       256 --~-~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~-ka~~a~e~  330 (374)
T PF13281_consen  256 --E-PD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYE-KAIQAAEK  330 (374)
T ss_pred             --C-cc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHH-HHHHHHHH
Confidence              2 22 1233567777777776554443344433111111111    11122233455677778889999 99999999


Q ss_pred             HHHH
Q 016114          340 VLRI  343 (395)
Q Consensus       340 al~~  343 (395)
                      ++.+
T Consensus       331 ~~~l  334 (374)
T PF13281_consen  331 AFKL  334 (374)
T ss_pred             Hhhc
Confidence            8865

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.68  E-value=0.0068  Score=45.43  Aligned_cols=110  Identities=19%  Similarity=0.202  Sum_probs=84.7

Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114          139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  218 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  218 (395)
                      ...+..++..+|..|.+.|+.++|++.|.++.+..       ........++.++..+....+++.....+..++-....
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-------~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-------TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE  104 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            45577889999999999999999999999987743       34455667778899999999999999999999988876


Q ss_pred             hhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          219 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       219 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                      ...  +..........-|..++..++|.+|...|-.+..
T Consensus       105 ~~~--d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  105 KGG--DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             ccc--hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            522  2222222333456667788999999998877654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.00085  Score=53.64  Aligned_cols=107  Identities=10%  Similarity=0.036  Sum_probs=92.2

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      +...+.-+-.-|+-|+...+|..|+..|.+.+..-    .++....+..|.+.+.+....|+|..|+.-+.+++.+    
T Consensus        77 p~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----  148 (390)
T KOG0551|consen   77 PHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----  148 (390)
T ss_pred             hHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            34477778889999999999999999999998752    3344456778999999999999999999999999886    


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  131 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  131 (395)
                          .|....+++.-+.++..+.++.+|..+++..+.+.
T Consensus       149 ----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  149 ----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             ----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence                67788999999999999999999999999887663

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.66  E-value=0.0087  Score=44.87  Aligned_cols=111  Identities=16%  Similarity=0.096  Sum_probs=88.0

Q ss_pred             ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114           97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  176 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  176 (395)
                      ......++..+|..|...|+.++|.+.|.++.+.+.     ........+.++..+....+++.....+..++-..... 
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-  105 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-  105 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-
Confidence            456677899999999999999999999999877532     23456778888999999999999999999999988764 


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                         +.+..........-|..+...++|.+|-..|-.+...
T Consensus       106 ---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  106 ---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             ---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence               2344444445556677788889999999988776543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.64  E-value=5e-05  Score=39.20  Aligned_cols=32  Identities=19%  Similarity=0.114  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114          357 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  388 (395)
Q Consensus       357 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  388 (395)
                      .++..+|.++..+|++++|+..|++++++.|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            57899999999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.00069  Score=51.69  Aligned_cols=113  Identities=16%  Similarity=0.019  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC---CCChHH-------HHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 016114          272 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG---KDSLPV-------GEALDCLVSIQTRLGEDDTKLLELLKRVL  341 (395)
Q Consensus       272 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~al  341 (395)
                      .++..-|+-++..|++.+|...|..|+...+...-   |..|..       ...+.+.+.++...|++- ++++.....+
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~y-evleh~seiL  257 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYY-EVLEHCSEIL  257 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHH-HHHHHHHHHH
Confidence            45566788899999999999999999988765532   223332       334677889999999888 8887777776


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhhh
Q 016114          342 RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKV  393 (395)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  393 (395)
                      .        .+|.+..+++.-|.+....=+..+|..-|.+++++.+.+..++
T Consensus       258 ~--------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  258 R--------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             h--------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            4        4677889999999999999999999999999999999887765

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.025  Score=45.75  Aligned_cols=299  Identities=13%  Similarity=0.119  Sum_probs=184.4

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChH----HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114           22 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI----LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   97 (395)
Q Consensus        22 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   97 (395)
                      ..+.......++++++..+.+.+......  ..++    ..-.+...+|..+...|+..+-..........+....   .
T Consensus         9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~--~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---K   83 (411)
T KOG1463|consen    9 ERAQNLVSVNQVEEAINILKSVLNKAQGA--SSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---K   83 (411)
T ss_pred             HHHHHhcccchhhhhHHHHHHHhhhhccc--cCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---h
Confidence            34444556667788888888877642211  1111    2345677899999999999888777777666554432   3


Q ss_pred             hhhhhhHHhHHHHHH-HcCChHHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114           98 ADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      +..+.....+-..+. ..+..+.-+.++..+++...+.   .... .-..-..+..+|...++|.+|+......+.-.++
T Consensus        84 akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e---kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKK  160 (411)
T KOG1463|consen   84 AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE---KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKK  160 (411)
T ss_pred             HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            334444444444333 3345667778888888876552   1111 2223456888999999999999999999888877


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHH-HHHHHHHHhhhcHHHHHHHHHH
Q 016114          176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL-LNLAASYSRSKNFVEAERLLRI  254 (395)
Q Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~  254 (395)
                      .    .+...+..++..-..+|....+..+|...+..|.......+  -+|..-..+ ..-|.++....+|..|..+|-+
T Consensus       161 l----DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiY--cpPqlQa~lDLqSGIlha~ekDykTafSYFyE  234 (411)
T KOG1463|consen  161 L----DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIY--CPPQLQATLDLQSGILHAAEKDYKTAFSYFYE  234 (411)
T ss_pred             c----ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccc--cCHHHHHHHHHhccceeecccccchHHHHHHH
Confidence            4    45556666677778899999999999988887776655544  233332222 2336667777899999999999


Q ss_pred             HHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHH
Q 016114          255 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL  334 (395)
Q Consensus       255 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~  334 (395)
                      |.+-+...  .+++....++..+-.+-...+..++--..+.-=..+.  .   ..+ ...++..++..+.+      ..+
T Consensus       235 AfEgf~s~--~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y---~g~-~i~AmkavAeA~~n------RSL  300 (411)
T KOG1463|consen  235 AFEGFDSL--DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--Y---AGR-DIDAMKAVAEAFGN------RSL  300 (411)
T ss_pred             HHcccccc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--c---cCc-chHHHHHHHHHhcC------CcH
Confidence            98855443  2233444555555556666677766544443211111  1   111 22445556655533      233


Q ss_pred             HHHHHHHHHHHhcc
Q 016114          335 ELLKRVLRIQEREF  348 (395)
Q Consensus       335 ~~~~~al~~~~~~~  348 (395)
                      .-|++|+.-++..+
T Consensus       301 kdF~~AL~~yk~eL  314 (411)
T KOG1463|consen  301 KDFEKALADYKKEL  314 (411)
T ss_pred             HHHHHHHHHhHHHH
Confidence            45666665554433

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.59  E-value=0.0025  Score=42.07  Aligned_cols=81  Identities=19%  Similarity=0.247  Sum_probs=61.4

Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHH
Q 016114          111 FIKEGKAVDAESVFSRILKIYTKVYGEN-DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  189 (395)
Q Consensus       111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  189 (395)
                      ....|++.+|.+.+.+..+......... ......+..++|.++...|++++|+..+++++.+.++.    .|...+..+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~----~D~~~l~~a   83 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN----GDRRCLAYA   83 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH----CCHHHHHHH
Confidence            4578999999999999998876643222 11355678889999999999999999999999999874    455555555


Q ss_pred             HHHHHH
Q 016114          190 RIDLAE  195 (395)
Q Consensus       190 ~~~la~  195 (395)
                      +..+..
T Consensus        84 l~~~~~   89 (94)
T PF12862_consen   84 LSWLAN   89 (94)
T ss_pred             HHHHHH
Confidence            444443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.57  E-value=0.00031  Score=36.67  Aligned_cols=31  Identities=32%  Similarity=0.538  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114          145 AMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus       145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      ++.+||.+|...|++++|+.+|++++.+...
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4788999999999999999999999877653

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.57  E-value=0.063  Score=49.38  Aligned_cols=191  Identities=18%  Similarity=0.171  Sum_probs=108.1

Q ss_pred             HcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHH
Q 016114          113 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID  192 (395)
Q Consensus       113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  192 (395)
                      ..+++.+|.....+.+.-        +|....+...-|.+..++|+.++|..+++..-.       ..+++..   .+..
T Consensus        21 d~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~-------~~~~D~~---tLq~   82 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEALYG-------LKGTDDL---TLQF   82 (932)
T ss_pred             hhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhcc-------CCCCchH---HHHH
Confidence            456788888877777654        566666666778889999999999966554322       2233332   3456


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHH
Q 016114          193 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF  272 (395)
Q Consensus       193 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  272 (395)
                      +-.+|..+|++++|..+|++++..        .|. -..+..+-.+|.+.+.|.+-.+   .++++++..  +..+... 
T Consensus        83 l~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQk---aa~~LyK~~--pk~~yyf-  147 (932)
T KOG2053|consen   83 LQNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQK---AALQLYKNF--PKRAYYF-  147 (932)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhC--CcccchH-
Confidence            788999999999999999999874        233 3445555566777666654332   233333322  2333332 


Q ss_pred             HHHHHHHHHHhcCChHHHHH-H-HHHHHHHHHHHcCCC-ChH-HHHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114          273 PMLHLGITLYHLNRDKEAEK-L-VLEALYIREIAFGKD-SLP-VGEALDCLVSIQTRLGEDDTKLLELLKR  339 (395)
Q Consensus       273 ~~~~la~~~~~~g~~~~A~~-~-~~~al~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~  339 (395)
                       |..+..+.......++... . .--|-.+....+... ... .++. ...-.+...+|+++ +|.+.+..
T Consensus       148 -WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~-~Lyl~iL~~~~k~~-eal~~l~~  215 (932)
T KOG2053|consen  148 -WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI-ILYLLILELQGKYQ-EALEFLAI  215 (932)
T ss_pred             -HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH-HHHHHHHHhcccHH-HHHHHHHH
Confidence             3333444444444444433 1 111111222222222 111 1221 22234566778888 88887743

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.57  E-value=0.0018  Score=42.78  Aligned_cols=82  Identities=20%  Similarity=0.238  Sum_probs=60.9

Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Q 016114          239 YSRSKNFVEAERLLRICLDIMTKTVGPD-DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD  317 (395)
Q Consensus       239 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  317 (395)
                      ....|++.+|.+.+.+..+......... ......++.++|.++...|++++|...+++++++.++.  .+......++.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~   85 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS   85 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence            3567999999999999998766553222 11345677889999999999999999999999999886  34444444555


Q ss_pred             HHHHH
Q 016114          318 CLVSI  322 (395)
Q Consensus       318 ~l~~~  322 (395)
                      .+..+
T Consensus        86 ~~~~l   90 (94)
T PF12862_consen   86 WLANL   90 (94)
T ss_pred             HHHHH
Confidence            54443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.0026  Score=50.97  Aligned_cols=105  Identities=15%  Similarity=0.120  Sum_probs=91.4

Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q 016114          141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  220 (395)
Q Consensus       141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  220 (395)
                      ..+..+..-|+-|+..++|..|...|.++++.      ..+++...+..|.|.|.+....|+|..|+.-..+++.+    
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~------kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----  148 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKK------KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----  148 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh------cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            36777888899999999999999999999885      34677788889999999999999999999999998874    


Q ss_pred             hCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114          221 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  259 (395)
Q Consensus       221 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  259 (395)
                          .|....+++.-|.++....++.+|..+.+..+.+.
T Consensus       149 ----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  149 ----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             ----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence                56677888899999999999999999998877643

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.49  E-value=0.066  Score=48.55  Aligned_cols=283  Identities=12%  Similarity=0.021  Sum_probs=163.9

Q ss_pred             cHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh-----CchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHh
Q 016114           32 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI-----GRAKKAVEIYHRVITILELNRGTESADLVLPLFS  106 (395)
Q Consensus        32 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  106 (395)
                      +...|..+++.+.+.          ....+...+|.++..-     .+.+.|+.+++.+...+++..   ......+.+.
T Consensus       227 ~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~  293 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYG  293 (552)
T ss_pred             hhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccH
Confidence            356777787776553          2344566677776544     689999999999987322211   1123457788


Q ss_pred             HHHHHHHcC-----ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhccc
Q 016114          107 LGSLFIKEG-----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVELYKKALRVIKDSNY  178 (395)
Q Consensus       107 l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~  178 (395)
                      +|.+|....     +...|..++.++-..       ++|   .+...+|.++....   ++..|..+|..|....     
T Consensus       294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-----  358 (552)
T KOG1550|consen  294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-----  358 (552)
T ss_pred             HHHHHhcCCCCccccHHHHHHHHHHHHhc-------CCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-----
Confidence            999998754     667788888888764       233   46777888887655   5789999999987631     


Q ss_pred             CCCCchHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh-hcHHHHHHHHH
Q 016114          179 MSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-KNFVEAERLLR  253 (395)
Q Consensus       179 ~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~  253 (395)
                         .    ..+...+|.+|..-    -+...|..++.++.+.       .++.   +...++.++..- ++++.+...+.
T Consensus       359 ---~----~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-------g~~~---A~~~~~~~~~~g~~~~~~~~~~~~  421 (552)
T KOG1550|consen  359 ---H----ILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-------GNPS---AAYLLGAFYEYGVGRYDTALALYL  421 (552)
T ss_pred             ---C----hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-------cChh---hHHHHHHHHHHccccccHHHHHHH
Confidence               1    23446677776542    3678999999988764       2222   222233322211 66666655554


Q ss_pred             HHHHHHHHhhCCCCcchHHHHH-HHHHHHHhc----CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc--
Q 016114          254 ICLDIMTKTVGPDDQSISFPML-HLGITLYHL----NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL--  326 (395)
Q Consensus       254 ~a~~~~~~~~~~~~~~~~~~~~-~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  326 (395)
                      .......+     .+.....+. .........    .+...+...+.++..       ..+   ..+...|+.+|..-  
T Consensus       422 ~~a~~g~~-----~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-------~g~---~~a~~~lgd~y~~g~g  486 (552)
T KOG1550|consen  422 YLAELGYE-----VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA-------QGN---ADAILKLGDYYYYGLG  486 (552)
T ss_pred             HHHHhhhh-----HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh-------ccC---HHHHhhhcceeeecCC
Confidence            44332111     111111111 111111111    133344444444322       222   23456777777654  


Q ss_pred             -C-CchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh-c--chhhhchhhHHHHHHH
Q 016114          327 -G-EDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL-G--RKEEKFPLKKRLSNLR  386 (395)
Q Consensus       327 -~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g--~~~~A~~~~~~a~~~~  386 (395)
                       + +++ .|...|.++..-         .  .....++|.++..- |  +...|..++.++.+..
T Consensus       487 ~~~d~~-~a~~~y~~a~~~---------~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~  539 (552)
T KOG1550|consen  487 TGRDPE-KAAAQYARASEQ---------G--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED  539 (552)
T ss_pred             CCCChH-HHHHHHHHHHHh---------h--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence             3 355 788888877642         1  67788888887652 1  1567777777776543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.49  E-value=0.052  Score=46.38  Aligned_cols=131  Identities=15%  Similarity=0.115  Sum_probs=87.7

Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HH
Q 016114          139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL-IT  217 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~  217 (395)
                      .......+...+.+....|+++.|...+.++......      .......+....+.+....|+..+|+..++..+. ..
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~------~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~  215 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS------SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL  215 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc------ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            3456778899999999999999999999988764321      1111233446678999999999999999988887 22


Q ss_pred             Hhhh-------------------------CCCChhHHHHHHHHHHHHHhh------hcHHHHHHHHHHHHHHHHHhhCCC
Q 016114          218 EKYK-------------------------GKEHPSFVTHLLNLAASYSRS------KNFVEAERLLRICLDIMTKTVGPD  266 (395)
Q Consensus       218 ~~~~-------------------------~~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~  266 (395)
                      ....                         .......+.++..+|......      +..+++...|..+..+        
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------  287 (352)
T PF02259_consen  216 SKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------  287 (352)
T ss_pred             hhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------
Confidence            2210                         011123345556666666666      6777777777777764        


Q ss_pred             CcchHHHHHHHHHHHHh
Q 016114          267 DQSISFPMLHLGITLYH  283 (395)
Q Consensus       267 ~~~~~~~~~~la~~~~~  283 (395)
                      .|....++..+|..+..
T Consensus       288 ~~~~~k~~~~~a~~~~~  304 (352)
T PF02259_consen  288 DPSWEKAWHSWALFNDK  304 (352)
T ss_pred             ChhHHHHHHHHHHHHHH
Confidence            34455566767665554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.49  E-value=0.00036  Score=35.88  Aligned_cols=30  Identities=27%  Similarity=0.595  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINV   46 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   46 (395)
                      +.+++.+|.+|..+|++++|+..|++++++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            467899999999999999999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.43  E-value=0.00011  Score=37.94  Aligned_cols=32  Identities=16%  Similarity=0.049  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114          357 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  388 (395)
Q Consensus       357 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  388 (395)
                      .++..+|.++..+|++++|+.+|++++.+.|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            57889999999999999999999999998764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.42  E-value=0.0088  Score=48.87  Aligned_cols=136  Identities=14%  Similarity=0.142  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHHcCCCC
Q 016114          231 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIAFGKDS  309 (395)
Q Consensus       231 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  309 (395)
                      +|..+.....+.+..+.|..+|.+|+.        .......+|...|.+-.. .++.+.|...|+.+++.+     +..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~   69 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSD   69 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCC
Confidence            455666777778889999999999864        334455677888888666 566666999999999876     333


Q ss_pred             hHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114          310 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  388 (395)
Q Consensus       310 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  388 (395)
                      +.   .+......+...++.+ .|..+|++++...     +.......++......-...|+.+....+.+++.+..++
T Consensus        70 ~~---~~~~Y~~~l~~~~d~~-~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   70 PD---FWLEYLDFLIKLNDIN-NARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HH---HHHHHHHHHHHTT-HH-HHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HH---HHHHHHHHHHHhCcHH-HHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            43   3445556778889888 9999999998531     111213567777788888889999998888888876544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.39  E-value=0.00055  Score=35.18  Aligned_cols=31  Identities=19%  Similarity=0.444  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVL   47 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   47 (395)
                      +.+++.+|.+++..|++++|+.+|++++.+.
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            4678999999999999999999999999873

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.38  E-value=0.00062  Score=37.49  Aligned_cols=42  Identities=17%  Similarity=0.316  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHH
Q 016114           60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  109 (395)
Q Consensus        60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  109 (395)
                      .++..+|..|...|++++|+..|+++++.        .|+...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            35778999999999999999999999987        5666667766664

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.37  E-value=0.00054  Score=37.74  Aligned_cols=42  Identities=24%  Similarity=0.313  Sum_probs=33.5

Q ss_pred             hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 016114          102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  151 (395)
Q Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  151 (395)
                      .++..+|..|...|++++|+..|+++++.        +|+...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            46788999999999999999999999987        3444455665553

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.35  E-value=0.048  Score=48.77  Aligned_cols=63  Identities=21%  Similarity=0.083  Sum_probs=32.7

Q ss_pred             hhHHhHHHHHHHcCChHHHHHHHHHHHHH-----HHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016114          102 LPLFSLGSLFIKEGKAVDAESVFSRILKI-----YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  169 (395)
Q Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  169 (395)
                      ..+..++......-.++-|+..|-+.-..     .++..     ....--...+.+-.--|++++|.+.|-.+
T Consensus       693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~-----~i~s~~~q~aei~~~~g~feeaek~yld~  760 (1189)
T KOG2041|consen  693 RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLR-----TIHSKEQQRAEISAFYGEFEEAEKLYLDA  760 (1189)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhh-----hhhhHHHHhHhHhhhhcchhHhhhhhhcc
Confidence            45666677666666777777776654221     11110     00001122344445567788887777543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.15  Score=47.98  Aligned_cols=90  Identities=11%  Similarity=-0.018  Sum_probs=53.1

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHH--HHH---------------hhCCCCcchHHHHHHHHHHHHhcCChHHHHHHH
Q 016114          232 LLNLAASYSRSKNFVEAERLLRICLDI--MTK---------------TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  294 (395)
Q Consensus       232 ~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~---------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  294 (395)
                      +..|+..+...|+|..|.+..++|-.+  +++               +.|-+-.-.+.-+-.+...|...|-+++-+.++
T Consensus      1223 ~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence            456677777778888887777665321  111               111111122334556777888889888888888


Q ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCch
Q 016114          295 LEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD  330 (395)
Q Consensus       295 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  330 (395)
                      +.++.+-+..        .-.+..||.+|.+-. ++
T Consensus      1303 Ea~LGLERAH--------MgmfTELaiLYskyk-p~ 1329 (1666)
T KOG0985|consen 1303 EAGLGLERAH--------MGMFTELAILYSKYK-PE 1329 (1666)
T ss_pred             HhhhchhHHH--------HHHHHHHHHHHHhcC-HH
Confidence            8777654332        123445676766543 44

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.30  E-value=0.00028  Score=36.15  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 016114          124 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV  163 (395)
Q Consensus       124 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  163 (395)
                      |++++++        +|....+++++|.+|...|++++|+
T Consensus         2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            6777776        6777889999999999999999986

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.25  E-value=0.0041  Score=50.79  Aligned_cols=135  Identities=13%  Similarity=0.073  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHHHhhCCCC
Q 016114          189 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIMTKTVGPDD  267 (395)
Q Consensus       189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~  267 (395)
                      +|..+.....+.+..+.|..+|.+|..        .......+|...|.+... .++.+.|..+|+.+++.+        
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--------   66 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--------   66 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------
Confidence            345566667777778999999999863        223344567778888666 566666999999999853        


Q ss_pred             cchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 016114          268 QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE  345 (395)
Q Consensus       268 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~  345 (395)
                      +.....+......+...|+.+.|..+|++++...     +........+......-...|+.+ ....+.+++.+.+.
T Consensus        67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~-~v~~v~~R~~~~~~  138 (280)
T PF05843_consen   67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLE-SVRKVEKRAEELFP  138 (280)
T ss_dssp             TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HH-HHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhh
Confidence            2233445556677888999999999999998753     111213345666777778889888 78888888877653

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.22  E-value=0.013  Score=42.99  Aligned_cols=79  Identities=16%  Similarity=0.168  Sum_probs=51.0

Q ss_pred             ChhHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC----ChHHHHHHHHHH
Q 016114          225 HPSFVTHLLNLAASYSRSKNF---VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN----RDKEAEKLVLEA  297 (395)
Q Consensus       225 ~~~~~~~~~~la~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a  297 (395)
                      +|.....+++-|.++..+.++   .++..+++.++.-+++.+.- +|....++.++|.+|..++    +..+|..+|++|
T Consensus        21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            455677788888888777655   44666677766655554322 5777889999999998765    445666777777


Q ss_pred             HHHHHHH
Q 016114          298 LYIREIA  304 (395)
Q Consensus       298 l~~~~~~  304 (395)
                      ...+++.
T Consensus       100 ~~~FqkA  106 (186)
T PF06552_consen  100 TEYFQKA  106 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.22  E-value=0.00045  Score=35.52  Aligned_cols=31  Identities=16%  Similarity=0.165  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114          357 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  387 (395)
Q Consensus       357 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  387 (395)
                      .++..+|.+|...|++++|...|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5688999999999999999999999999887

...

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.12  Score=44.84  Aligned_cols=258  Identities=18%  Similarity=0.128  Sum_probs=140.1

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh
Q 016114           21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  100 (395)
Q Consensus        21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  100 (395)
                      +.....+...++++.  ....+++...+....++    +.....-+..+...|+.+.|+..++.+++..-      ..-.
T Consensus       235 ~~~~~~~~~~p~~d~--~~~~~~Ll~~~~~~p~g----a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~------kQ~~  302 (546)
T KOG3783|consen  235 YQFISFVLGTPNPDG--EECEKALKKYRKRYPKG----ALWLLMEARILSIKGNSEAAIDMESLSIPIRM------KQVK  302 (546)
T ss_pred             HHHHHHHcCCCCccH--HHHHHHhHHHHHhCCCC----ccHHHHHHHHHHHcccHHHHHHHHHhcccHHH------HHHH
Confidence            344445555555555  44455555444443332    22334456666777777778888877776211      1123


Q ss_pred             hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH-HHH--------HHCCCHHHHHHHHHHHHH
Q 016114          101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA-HAK--------CANGNAEEAVELYKKALR  171 (395)
Q Consensus       101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~--------~~~g~~~~A~~~~~~a~~  171 (395)
                      .-.++.+|.++..+.+|.+|-..+....+..       +...+ .|..++ .++        ...|+-+.|..+++...+
T Consensus       303 ~l~~fE~aw~~v~~~~~~~aad~~~~L~des-------dWS~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~  374 (546)
T KOG3783|consen  303 SLMVFERAWLSVGQHQYSRAADSFDLLRDES-------DWSHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEE  374 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-------hhhHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHH
Confidence            3466778888888888888888877766541       11111 222222 222        223466666666665555


Q ss_pred             HHHhcccCCCCch------------------H-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHH
Q 016114          172 VIKDSNYMSLDDS------------------I-MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL  232 (395)
Q Consensus       172 ~~~~~~~~~~~~~------------------~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  232 (395)
                      .........|-..                  . .+..+..++.++..-...  +..-..+.........-.+..+..--+
T Consensus       375 l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~--s~~~l~k~~~~~~~~~~~d~Dd~~lk~  452 (546)
T KOG3783|consen  375 LLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRM--SKNELEKMRAELENPKIDDSDDEGLKY  452 (546)
T ss_pred             HHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccC--ChhhHHHHHHHHhccCCCCchHHHHHH
Confidence            5443100000000                  0 000112222222221111  111111211111111111233344456


Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHH
Q 016114          233 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR-DKEAEKLVLEALYIR  301 (395)
Q Consensus       233 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~  301 (395)
                      ..+|.++...|+...|..+|...++- ......+..-...+++.+|.++...|. ..++.+++.+|-+..
T Consensus       453 lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~  521 (546)
T KOG3783|consen  453 LLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA  521 (546)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence            67899999999999999999988864 222334555667899999999999998 999999999987643

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.20  E-value=0.00041  Score=35.54  Aligned_cols=32  Identities=19%  Similarity=0.406  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHH
Q 016114           82 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE  121 (395)
Q Consensus        82 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  121 (395)
                      |++++++        +|....+++++|.+|...|++++|+
T Consensus         2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            5677776        6888999999999999999999986

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.13  E-value=0.035  Score=48.53  Aligned_cols=95  Identities=18%  Similarity=0.115  Sum_probs=73.1

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHH
Q 016114          278 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML  357 (395)
Q Consensus       278 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  357 (395)
                      |..+..+|+...|.+++..|+....       ......+.+|+.+..+.|-.. .|-.++.+++.+...     .   .-
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p-------~~~~v~~v~la~~~~~~~~~~-da~~~l~q~l~~~~s-----e---pl  677 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAP-------LQQDVPLVNLANLLIHYGLHL-DATKLLLQALAINSS-----E---PL  677 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccCh-------hhhcccHHHHHHHHHHhhhhc-cHHHHHHHHHhhccc-----C---ch
Confidence            4444458999999999999976431       122234678999999999777 899999999987421     2   34


Q ss_pred             HHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114          358 TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  388 (395)
Q Consensus       358 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  388 (395)
                      ..+.+|+++....+.+.|++.|++|++..++
T Consensus       678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~  708 (886)
T KOG4507|consen  678 TFLSLGNAYLALKNISGALEAFRQALKLTTK  708 (886)
T ss_pred             HHHhcchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence            5778899999999999999999999876543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.09  E-value=0.0017  Score=33.31  Aligned_cols=31  Identities=16%  Similarity=0.540  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVL   47 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   47 (395)
                      +.+++.+|.+|...|++++|..+|++++++.
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            3578999999999999999999999999874

...

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.27  Score=46.38  Aligned_cols=187  Identities=17%  Similarity=0.158  Sum_probs=95.5

Q ss_pred             hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114          102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  181 (395)
Q Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  181 (395)
                      .+|..+|......|...+|++.|-++          ++|   ..+.....+....|.|++-++++.-+.+..++.     
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~----- 1166 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREP----- 1166 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc-----
Confidence            34555555555555555555555443          222   123444445555566666665555554433221     


Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114          182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  261 (395)
Q Consensus       182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  261 (395)
                      .      +-..|...|.+.++..+-++.+          .|+++..    ....|.-+...|.|+.|.-+|...      
T Consensus      1167 ~------id~eLi~AyAkt~rl~elE~fi----------~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~~v------ 1220 (1666)
T KOG0985|consen 1167 Y------IDSELIFAYAKTNRLTELEEFI----------AGPNVAN----IQQVGDRCFEEKMYEAAKLLYSNV------ 1220 (1666)
T ss_pred             c------chHHHHHHHHHhchHHHHHHHh----------cCCCchh----HHHHhHHHhhhhhhHHHHHHHHHh------
Confidence            0      0012333444445444433221          1222221    223455556666666665555432      


Q ss_pred             hhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-----------------HHHcCCCChHHHHHHHHHHHHHH
Q 016114          262 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR-----------------EIAFGKDSLPVGEALDCLVSIQT  324 (395)
Q Consensus       262 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------~~~~~~~~~~~~~~~~~l~~~~~  324 (395)
                                .-+..|+..+...|+|..|...-++|-...                 .++.|-+-.-.+.-+..+...|.
T Consensus      1221 ----------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq 1290 (1666)
T KOG0985|consen 1221 ----------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQ 1290 (1666)
T ss_pred             ----------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHH
Confidence                      234567788888888888888877764331                 11112111111333556677777


Q ss_pred             HcCCchhHHHHHHHHHHHH
Q 016114          325 RLGEDDTKLLELLKRVLRI  343 (395)
Q Consensus       325 ~~~~~~~~A~~~~~~al~~  343 (395)
                      ..|-++ +-+.+++.++.+
T Consensus      1291 ~rGyFe-ElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1291 DRGYFE-ELISLLEAGLGL 1308 (1666)
T ss_pred             hcCcHH-HHHHHHHhhhch
Confidence            888777 777777666643

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.08  E-value=0.0077  Score=44.06  Aligned_cols=78  Identities=13%  Similarity=0.147  Sum_probs=48.8

Q ss_pred             ChhhhhhHHhHHHHHHHcCCh---HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC----CHHHHHHHHHHH
Q 016114           97 SADLVLPLFSLGSLFIKEGKA---VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG----NAEEAVELYKKA  169 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a  169 (395)
                      +|..+..+++-|..+..+.++   .++..+++.++.-++..+. -+|....++.++|.+|...+    +..+|..+|++|
T Consensus        21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            456677777778777766554   4466666666665554432 25777788999999987654    455666777777


Q ss_pred             HHHHHh
Q 016114          170 LRVIKD  175 (395)
Q Consensus       170 ~~~~~~  175 (395)
                      .+.+++
T Consensus       100 ~~~Fqk  105 (186)
T PF06552_consen  100 TEYFQK  105 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.15  Score=41.51  Aligned_cols=283  Identities=11%  Similarity=-0.005  Sum_probs=169.8

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHH-HhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL-GSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      .....+|..+...|+.++=..........+...   ..+..+.....+-..+ ...+....-+..+..+++...+..  .
T Consensus        49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v---~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--R  123 (411)
T KOG1463|consen   49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSV---SKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--R  123 (411)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--H
Confidence            456789999999999888777776665554433   1233333333333333 233556677777777777665421  1


Q ss_pred             ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114           97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  176 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  176 (395)
                      .......-..+..+|...++|.+|+......+.-.++.  .+.+....++..=...|....+..+|...+..|.......
T Consensus       124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai  201 (411)
T KOG1463|consen  124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI  201 (411)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc
Confidence            12223345568899999999999999999998888876  3445556666667788899999999988888776654332


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114          177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  256 (395)
Q Consensus       177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  256 (395)
                         -.++...+..=..-|..+....+|..|..+|-+|.+-+....  +++....++..+-.+-...+..++--.++..-.
T Consensus       202 ---YcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~--~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~  276 (411)
T KOG1463|consen  202 ---YCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD--DDVKALTSLKYMLLCKIMLNLPDDVAALLSAKL  276 (411)
T ss_pred             ---ccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccC--CcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHH
Confidence               112222233323446666777899999999999988765443  334445555555555555566665544443222


Q ss_pred             HHHHHhhCCCCcchHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc
Q 016114          257 DIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL  326 (395)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~  326 (395)
                      .+.  .   .. ....++...+..+..  ..+|+.|+.-|..-+.        .+|-+..-+..|-.....+
T Consensus       277 ~l~--y---~g-~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~--------~D~ivr~Hl~~Lyd~lLEk  334 (411)
T KOG1463|consen  277 ALK--Y---AG-RDIDAMKAVAEAFGNRSLKDFEKALADYKKELA--------EDPIVRSHLQSLYDNLLEK  334 (411)
T ss_pred             HHh--c---cC-cchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh--------cChHHHHHHHHHHHHHHHH
Confidence            211  1   12 234566667776654  3455555555544332        3344444444454444443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.73  E-value=0.44  Score=43.39  Aligned_cols=263  Identities=16%  Similarity=0.063  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHh-----hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC-----chhHHHHHHHHHHH
Q 016114           18 AILLHMGSMYST-----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-----RAKKAVEIYHRVIT   87 (395)
Q Consensus        18 ~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~   87 (395)
                      .....+|.+|..     ..|.+.|+.++..+.....+...   .....+.+.+|.+|....     ++..|..++.++-+
T Consensus       245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~---~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~  321 (552)
T KOG1550|consen  245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT---KGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE  321 (552)
T ss_pred             HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh---hcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence            344566666653     36899999999999873211100   012235778899988754     66778888888766


Q ss_pred             HHHHhcCCCChhhhhhHHhHHHHHHHcC---ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCHH
Q 016114           88 ILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAE  160 (395)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~  160 (395)
                      .          ....+.+.+|.++..-.   ++..|..+|..|...       .+   ..+...++.+|..    ..+..
T Consensus       322 ~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-------G~---~~A~~~la~~y~~G~gv~r~~~  381 (552)
T KOG1550|consen  322 L----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-------GH---ILAIYRLALCYELGLGVERNLE  381 (552)
T ss_pred             c----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-------CC---hHHHHHHHHHHHhCCCcCCCHH
Confidence            4          34467788888887765   567899999888754       22   2466777777764    35789


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhhhCCCChhH-HHHHHHHHHH
Q 016114          161 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKGKEHPSF-VTHLLNLAAS  238 (395)
Q Consensus       161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~  238 (395)
                      .|..++.++.+..         ++.   +...++..+..- ++++.+...+....+..-+     .+.. ...+......
T Consensus       382 ~A~~~~k~aA~~g---------~~~---A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~-----~~q~~a~~l~~~~~~  444 (552)
T KOG1550|consen  382 LAFAYYKKAAEKG---------NPS---AAYLLGAFYEYGVGRYDTALALYLYLAELGYE-----VAQSNAAYLLDQSEE  444 (552)
T ss_pred             HHHHHHHHHHHcc---------Chh---hHHHHHHHHHHccccccHHHHHHHHHHHhhhh-----HHhhHHHHHHHhccc
Confidence            9999999998742         111   112233332222 6777766665544443211     1111 1111111111


Q ss_pred             HHhh----hcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHHcCCCCh
Q 016114          239 YSRS----KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL----NRDKEAEKLVLEALYIREIAFGKDSL  310 (395)
Q Consensus       239 ~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~  310 (395)
                      ....    .+...+...+.++..          .....+...+|.+|..-    .+++.|...|.++....         
T Consensus       445 ~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---------  505 (552)
T KOG1550|consen  445 DLFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---------  505 (552)
T ss_pred             cccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---------
Confidence            1111    134445555544433          23345667788877654    45888988888876521         


Q ss_pred             HHHHHHHHHHHHHHHcCC---chhHHHHHHHHHHH
Q 016114          311 PVGEALDCLVSIQTRLGE---DDTKLLELLKRVLR  342 (395)
Q Consensus       311 ~~~~~~~~l~~~~~~~~~---~~~~A~~~~~~al~  342 (395)
                        +...+++|.++..---   .. .|..++.++.+
T Consensus       506 --~~~~~nlg~~~e~g~g~~~~~-~a~~~~~~~~~  537 (552)
T KOG1550|consen  506 --AQALFNLGYMHEHGEGIKVLH-LAKRYYDQASE  537 (552)
T ss_pred             --hHHHhhhhhHHhcCcCcchhH-HHHHHHHHHHh
Confidence              5678889988765321   34 67777776654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.73  E-value=0.5  Score=43.92  Aligned_cols=231  Identities=15%  Similarity=0.066  Sum_probs=127.8

Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhH
Q 016114           28 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL  107 (395)
Q Consensus        28 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  107 (395)
                      ...+++.+|.....+.++-        +|....+...-|..+.++|+.++|..+++. +..       ..+..-.++..+
T Consensus        20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~-------~~~~D~~tLq~l   83 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEA-LYG-------LKGTDDLTLQFL   83 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhh-hcc-------CCCCchHHHHHH
Confidence            4678888888888877664        344444455567788999999999955543 322       112234567778


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHH
Q 016114          108 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME  187 (395)
Q Consensus       108 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  187 (395)
                      -.+|..+|++++|..+|++++..        .|. -..+..+=.+|.+.+.|.+-.+.   ++++++.   . |..+.. 
T Consensus        84 ~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~---~-pk~~yy-  146 (932)
T KOG2053|consen   84 QNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKN---F-PKRAYY-  146 (932)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh---C-Ccccch-
Confidence            89999999999999999999875        233 34445555666666666543333   3344443   1 232322 


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHH--HHHHHHHHhhhCCC-Ch-hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q 016114          188 NMRIDLAELLHIVGRGQEGRELL--EECLLITEKYKGKE-HP-SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  263 (395)
Q Consensus       188 ~~~~~la~~~~~~g~~~~A~~~~--~~al~~~~~~~~~~-~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  263 (395)
                       .|..+..+.......+....-.  --|-.......... .. ...... ..-.+...+|++++|.+.+..-+.  ... 
T Consensus       147 -fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la--~~l-  221 (932)
T KOG2053|consen  147 -FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLA--EKL-  221 (932)
T ss_pred             -HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHH--Hhc-
Confidence             2233444555554444444311  01111111211111 11 111221 122456678899999998854332  111 


Q ss_pred             CCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114          264 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  299 (395)
Q Consensus       264 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  299 (395)
                         .+........-...+...++|.+-.+...+.+.
T Consensus       222 ---~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  222 ---TSANLYLENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             ---cccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence               122222223345566677788777666666555

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.64  E-value=0.07  Score=33.05  Aligned_cols=70  Identities=7%  Similarity=0.047  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           19 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        19 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      -...-|.-++...+.++|+..++++++..     .+.+....++..+..+|...|+|.+.+.+..+=+++.+...
T Consensus         8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele   77 (80)
T PF10579_consen    8 QQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE   77 (80)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            34455666778999999999999999864     34567888899999999999999999999888888876653

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.62  E-value=0.48  Score=42.42  Aligned_cols=149  Identities=22%  Similarity=0.200  Sum_probs=83.4

Q ss_pred             hHHHHHHHcCChHHHHHHHHHH------HHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114          106 SLGSLFIKEGKAVDAESVFSRI------LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  179 (395)
Q Consensus       106 ~l~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  179 (395)
                      .++.++...|+|.+|.++|.+.      ++++..          .-++..+.-+...|..++-....++-.+.....   
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~---  703 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI---  703 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---
Confidence            4678888899999999988753      333221          124556677777777777666666655555432   


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHHHHH------HHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114          180 SLDDSIMENMRIDLAELLHIVGRGQEGRELL------EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  253 (395)
Q Consensus       180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  253 (395)
                        ..|..      -|..+...|+.++|+...      +-++++..+..    ......+..++..+.....+.-|.+.|.
T Consensus       704 --kePka------AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~  771 (1081)
T KOG1538|consen  704 --KEPKA------AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFL  771 (1081)
T ss_pred             --CCcHH------HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHH
Confidence              22221      355667778888887653      34455544332    1222334445555555555555555555


Q ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHH
Q 016114          254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  295 (395)
Q Consensus       254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  295 (395)
                      +.-+.                ..+..++...++|++|..+.+
T Consensus       772 k~gD~----------------ksiVqlHve~~~W~eAFalAe  797 (1081)
T KOG1538|consen  772 KMGDL----------------KSLVQLHVETQRWDEAFALAE  797 (1081)
T ss_pred             HhccH----------------HHHhhheeecccchHhHhhhh
Confidence            43221                123344555666666655443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.61  E-value=0.0074  Score=31.58  Aligned_cols=35  Identities=17%  Similarity=0.334  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG   52 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   52 (395)
                      .++..||.+-...++|++|+.-|.+++++.++..+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~   36 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP   36 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence            56788999999999999999999999999877654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.53  E-value=0.31  Score=39.11  Aligned_cols=152  Identities=20%  Similarity=0.164  Sum_probs=89.8

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh
Q 016114          147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  226 (395)
Q Consensus       147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  226 (395)
                      ..-+.-....|++.+|...+..++....+       .   ..+...++.+|...|+.+.|...+...-.-.       ..
T Consensus       138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~-------~---~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-------~~  200 (304)
T COG3118         138 LAEAKELIEAEDFGEAAPLLKQALQAAPE-------N---SEAKLLLAECLLAAGDVEAAQAILAALPLQA-------QD  200 (304)
T ss_pred             HHHhhhhhhccchhhHHHHHHHHHHhCcc-------c---chHHHHHHHHHHHcCChHHHHHHHHhCcccc-------hh
Confidence            33455667899999999999999986432       2   3445779999999999999988876521110       00


Q ss_pred             hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Q 016114          227 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG  306 (395)
Q Consensus       227 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  306 (395)
                      .....+.....++.......+....-.+.         ..+|+....-..+|..+...|+.++|.+.+-..+..   ..+
T Consensus       201 ~~~~~l~a~i~ll~qaa~~~~~~~l~~~~---------aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~  268 (304)
T COG3118         201 KAAHGLQAQIELLEQAAATPEIQDLQRRL---------AADPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRG  268 (304)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCHHHHHHHH---------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ccc
Confidence            11111111112222222222222221111         135767778889999999999999998877555443   233


Q ss_pred             CCChHHHHHHHHHHHHHHHcCCch
Q 016114          307 KDSLPVGEALDCLVSIQTRLGEDD  330 (395)
Q Consensus       307 ~~~~~~~~~~~~l~~~~~~~~~~~  330 (395)
                      ..+..   ....+-.++...|..+
T Consensus       269 ~~d~~---~Rk~lle~f~~~g~~D  289 (304)
T COG3118         269 FEDGE---ARKTLLELFEAFGPAD  289 (304)
T ss_pred             ccCcH---HHHHHHHHHHhcCCCC
Confidence            33333   2344555666666555

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.42  E-value=0.0027  Score=32.23  Aligned_cols=31  Identities=23%  Similarity=0.184  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114          357 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  387 (395)
Q Consensus       357 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  387 (395)
                      ++++.+|.++...|++++|+..|+++++..|
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            3678999999999999999999999987655

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.38  E-value=0.11  Score=32.23  Aligned_cols=66  Identities=18%  Similarity=0.088  Sum_probs=52.8

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Q 016114          149 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  221 (395)
Q Consensus       149 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  221 (395)
                      -|.-++...+.++|+..++++++..       .+++....++..+..+|...|++.+.+.+...-+++.++..
T Consensus        12 ~GlkLY~~~~~~~Al~~W~~aL~k~-------~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele   77 (80)
T PF10579_consen   12 KGLKLYHQNETQQALQKWRKALEKI-------TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE   77 (80)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhhc-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3444567888999999999999854       34556677888899999999999999999888888776553

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PRK14707 hypothetical protein; Provisional

Probab=96.38  E-value=1.5  Score=45.29  Aligned_cols=297  Identities=9%  Similarity=-0.003  Sum_probs=155.6

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHH--HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           22 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS--LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        22 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      .++++.-..++|.++..+-.-+..+......  ++.....  -..++.++...++|.+...+-.-+..+...+.  +++.
T Consensus       836 ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~--e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~--~d~~  911 (2710)
T PRK14707        836 HVATVLNAMSKWPDNAVCAAAAGAMAERLAD--EPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLA--DEPE  911 (2710)
T ss_pred             HHHHHHHHhccCCCchHHHHHHHHHHHHHhc--ChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHh--cCHH
Confidence            4566666666776666655555555444322  1222111  23457777778888887777777777766654  3333


Q ss_pred             hhh--hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114          100 LVL--PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus       100 ~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      ...  .-..++.++....++.++..+-.-+..+...+.  ..+....  .-..+++++...++|.+...+-.-+..+...
T Consensus       912 Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa--~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~r  989 (2710)
T PRK14707        912 LRKALSAHRVATALNALSKWPDIPVCATAASALAERLS--DDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAER  989 (2710)
T ss_pred             HHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhc--cChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHH
Confidence            333  234577888888888887666666666666553  2333322  2345677777777877766655555554443


Q ss_pred             cccCCCCchH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHH--HHHHHHHHHhhhcHHHHHHHH
Q 016114          176 SNYMSLDDSI-MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH--LLNLAASYSRSKNFVEAERLL  252 (395)
Q Consensus       176 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~  252 (395)
                      .   ..+... ....-..++.++....++.++-.+-.-+..+.....  ..+.....  -..++.++....+|.+...+-
T Consensus       990 L---~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa--~ep~L~~amdaQ~lan~LNALSKWPde~~Cr 1064 (2710)
T PRK14707        990 L---VDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS--NDPGLCKALSSQGLTTVLNALCKWPEMPVCL 1064 (2710)
T ss_pred             H---hccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc--cCHhhhhhcchHHHHHHHHhhccCCCchhHH
Confidence            2   111100 001113466677777777665555555555555443  22222221  224555666666665544444


Q ss_pred             HHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCc
Q 016114          253 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED  329 (395)
Q Consensus       253 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  329 (395)
                      .-+..+.........-.....-..++.++....+|.+.-.+-+-++.+....-....+........++.+.....++
T Consensus      1065 ~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKW 1141 (2710)
T PRK14707       1065 AAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKW 1141 (2710)
T ss_pred             HHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcC
Confidence            44444333331111101111223566677777777776666666666666654333333322333444444444443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.32  E-value=0.76  Score=41.25  Aligned_cols=115  Identities=18%  Similarity=0.129  Sum_probs=59.0

Q ss_pred             HHHHHHcCChHHHHHHH------HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114          108 GSLFIKEGKAVDAESVF------SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  181 (395)
Q Consensus       108 ~~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  181 (395)
                      +.++...|+.++|+...      +-++++.+++    +......+..++..+.....+.-|.+.|.+.-+.         
T Consensus       710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------  776 (1081)
T KOG1538|consen  710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------  776 (1081)
T ss_pred             HHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence            45566667777766543      3344444332    1222233444555555555555555555543221         


Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114          182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  255 (395)
Q Consensus       182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  255 (395)
                               ..+...+...+++.+|..+.++--+           ....++...|..+....+|++|.+.|.+|
T Consensus       777 ---------ksiVqlHve~~~W~eAFalAe~hPe-----------~~~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  777 ---------KSLVQLHVETQRWDEAFALAEKHPE-----------FKDDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             ---------HHHhhheeecccchHhHhhhhhCcc-----------ccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence                     2234455666777777665443111           12234455566666666777776666554

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.30  E-value=0.019  Score=30.03  Aligned_cols=36  Identities=19%  Similarity=-0.065  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114          272 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  307 (395)
Q Consensus       272 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  307 (395)
                      .++..||.+-...++|++|..-|++++++.++.+.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~   37 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP   37 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            467889999999999999999999999999887643

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.22  E-value=0.008  Score=30.40  Aligned_cols=30  Identities=23%  Similarity=0.507  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINVL   47 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   47 (395)
                      .+++.+|.++...|++++|+..|++.++..
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            367899999999999999999999988753

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.20  E-value=0.78  Score=40.19  Aligned_cols=252  Identities=14%  Similarity=0.055  Sum_probs=141.8

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHH
Q 016114          107 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM  186 (395)
Q Consensus       107 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  186 (395)
                      ....+...+..+.  +...+++...+...    |..+.....-+.++...|+.+.|+..++.+++..-        ....
T Consensus       237 ~~~~~~~~p~~d~--~~~~~~Ll~~~~~~----p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~--------kQ~~  302 (546)
T KOG3783|consen  237 FISFVLGTPNPDG--EECEKALKKYRKRY----PKGALWLLMEARILSIKGNSEAAIDMESLSIPIRM--------KQVK  302 (546)
T ss_pred             HHHHHcCCCCccH--HHHHHHhHHHHHhC----CCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHH--------HHHH
Confidence            3344445555554  44445554444443    33334455667788888888888888888776211        1233


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHH
Q 016114          187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--------SKNFVEAERLLRICLDI  258 (395)
Q Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~  258 (395)
                      .-++..+|.++..+.+|..|-..+....+..       +...+..-+..|.++..        .|+-++|..+++.....
T Consensus       303 ~l~~fE~aw~~v~~~~~~~aad~~~~L~des-------dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l  375 (546)
T KOG3783|consen  303 SLMVFERAWLSVGQHQYSRAADSFDLLRDES-------DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEEL  375 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-------hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHH
Confidence            4556788888988999999988887766542       22222222222333322        33555555555544443


Q ss_pred             HHHhhCCCCcch--------------------HH--HHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHcCCCChHHHH
Q 016114          259 MTKTVGPDDQSI--------------------SF--PMLHLGITLYHL--NRDKEAEKLVLEALYIREIAFGKDSLPVGE  314 (395)
Q Consensus       259 ~~~~~~~~~~~~--------------------~~--~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  314 (395)
                      .... +.+.|..                    ..  -+..++.++..-  ...++..    ++........-.+..+..-
T Consensus       376 ~~~a-~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~l  450 (546)
T KOG3783|consen  376 LANA-GKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGL  450 (546)
T ss_pred             HHhc-cccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHH
Confidence            3321 1111111                    00  122333222221  1112222    1111111111112233344


Q ss_pred             HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc-hhhhchhhHHHHHHH
Q 016114          315 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR-KEEKFPLKKRLSNLR  386 (395)
Q Consensus       315 ~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~  386 (395)
                      -+..+|.++..+|+.. .|..+|..+++-... ...++.-.+.+++.+|.+|..+|. ..++..++.+|.+..
T Consensus       451 k~lL~g~~lR~Lg~~~-~a~~~f~i~~~~e~~-~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~  521 (546)
T KOG3783|consen  451 KYLLKGVILRNLGDSE-VAPKCFKIQVEKESK-RTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA  521 (546)
T ss_pred             HHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence            4567899999999888 999999988865222 234455667899999999999999 999999999997755

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.07  E-value=0.62  Score=39.67  Aligned_cols=154  Identities=15%  Similarity=0.115  Sum_probs=104.7

Q ss_pred             CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCc---------------------ChHHHHHHHHHHHHHH
Q 016114           11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK---------------------TSILLVTSLLGMAKVL   69 (395)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------------------~~~~~~~~~~~l~~~~   69 (395)
                      ..+|....++..++.++..+|+++.|.++.++|+-.++....+                     .+.....+++......
T Consensus        34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L  113 (360)
T PF04910_consen   34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL  113 (360)
T ss_pred             HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence            5567788889999999999999999999999999776643211                     1224455677777888


Q ss_pred             HhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 016114           70 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  149 (395)
Q Consensus        70 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  149 (395)
                      .+.|-+..|.++.+-.+.+     .+. .+-..+...+-....+.++++--++.++.......+.   .........+..
T Consensus       114 ~~RG~~rTAlE~~KlLlsL-----dp~-~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~  184 (360)
T PF04910_consen  114 GRRGCWRTALEWCKLLLSL-----DPD-EDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSI  184 (360)
T ss_pred             HhcCcHHHHHHHHHHHHhc-----CCC-CCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHH
Confidence            8999999999999888876     222 0223345555556667788876666666544421110   000111334556


Q ss_pred             HHHHHHCCCH---------------HHHHHHHHHHHHHH
Q 016114          150 AHAKCANGNA---------------EEAVELYKKALRVI  173 (395)
Q Consensus       150 a~~~~~~g~~---------------~~A~~~~~~a~~~~  173 (395)
                      +.++...++-               ++|...+.+|+...
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f  223 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF  223 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence            6677777777               88999999998865

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.05  E-value=0.6  Score=37.59  Aligned_cols=127  Identities=19%  Similarity=0.094  Sum_probs=80.5

Q ss_pred             HhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCch
Q 016114          105 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS  184 (395)
Q Consensus       105 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  184 (395)
                      ..-+.-....|++.+|...+..++..        .+....+...++.+|...|+.+.|...+...=.-.+       +..
T Consensus       138 ~~~~~~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-------~~~  202 (304)
T COG3118         138 LAEAKELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-------DKA  202 (304)
T ss_pred             HHHhhhhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-------hhH
Confidence            34455677889999999999999987        333456778899999999999999988876322111       011


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                      ..  ........+.......+....-.++ .        .+|+.......+|..+...|+.++|.+.+-..+.
T Consensus       203 ~~--~l~a~i~ll~qaa~~~~~~~l~~~~-a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~  264 (304)
T COG3118         203 AH--GLQAQIELLEQAAATPEIQDLQRRL-A--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLR  264 (304)
T ss_pred             HH--HHHHHHHHHHHHhcCCCHHHHHHHH-H--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            10  0111112222222222222221111 1        3566667788999999999999999988766554

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.03  E-value=0.76  Score=38.59  Aligned_cols=149  Identities=13%  Similarity=0.069  Sum_probs=92.0

Q ss_pred             CChhHHHHHHHHHHHHHhhhc------------HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHH
Q 016114          224 EHPSFVTHLLNLAASYSRSKN------------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  291 (395)
Q Consensus       224 ~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  291 (395)
                      .+|....++..+...--..-.            .+.-+.++++|++       . +|.....+..+-.+.....+.++..
T Consensus        14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~-------~-np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen   14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALK-------H-NPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH-------h-CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            456666666666554333221            2344455555555       2 4555555555555666667777777


Q ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCC----------CHHHHHHHHH
Q 016114          292 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE----------SEEVMLTLKK  361 (395)
Q Consensus       292 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~  361 (395)
                      +-+++++...     ++.+.....+...-......-.+. .....|.+++..........          ......+...
T Consensus        86 ~~we~~l~~~-----~~~~~LW~~yL~~~q~~~~~f~v~-~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r  159 (321)
T PF08424_consen   86 KKWEELLFKN-----PGSPELWREYLDFRQSNFASFTVS-DVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR  159 (321)
T ss_pred             HHHHHHHHHC-----CCChHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence            7777777642     444444333333332223333466 78888999887766554332          2345667778


Q ss_pred             HHHHHHHhcchhhhchhhHHHHHHH
Q 016114          362 VVSYLDKLGRKEEKFPLKKRLSNLR  386 (395)
Q Consensus       362 la~~~~~~g~~~~A~~~~~~a~~~~  386 (395)
                      +...+...|-.+.|...++-.+++.
T Consensus       160 ~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  160 LCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHCCchHHHHHHHHHHHHHH
Confidence            8888999999999999999988764

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=96.01  E-value=0.46  Score=35.96  Aligned_cols=99  Identities=22%  Similarity=0.272  Sum_probs=63.7

Q ss_pred             HHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114          258 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  337 (395)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  337 (395)
                      +..+..+..+|....       .++.+-.-++|...|-++       -+....+.+.....||..|.+. +.+ +++.++
T Consensus       100 L~~~tk~S~dP~llY-------y~Wsr~~d~~A~~~fL~~-------E~~~~l~t~elq~aLAtyY~kr-D~~-Kt~~ll  163 (203)
T PF11207_consen  100 LQEETKNSQDPYLLY-------YHWSRFGDQEALRRFLQL-------EGTPELETAELQYALATYYTKR-DPE-KTIQLL  163 (203)
T ss_pred             HHHHHccCCCccHHH-------HHhhccCcHHHHHHHHHH-------cCCCCCCCHHHHHHHHHHHHcc-CHH-HHHHHH
Confidence            334444456665432       233343335555555433       2344445567788899888754 566 999999


Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhc
Q 016114          338 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF  376 (395)
Q Consensus       338 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  376 (395)
                      -+++++...    ++.-.++++..|+.++..+|+++.|-
T Consensus       164 ~~~L~l~~~----~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  164 LRALELSNP----DDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHhcCC----CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            999998654    22233577888999999999999874

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.01  E-value=0.025  Score=48.08  Aligned_cols=93  Identities=15%  Similarity=0.055  Sum_probs=80.5

Q ss_pred             HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114           64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  143 (395)
Q Consensus        64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  143 (395)
                      .-+...+..+.|+.|+..|.+++++        +|..+..+.+.+..+.+.+++..|+.-+.++++.        +|...
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~   72 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI   72 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence            3456677889999999999999987        6777777788889999999999999999999986        58888


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          144 MAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      .+|...|..+...+++.+|...|+....+
T Consensus        73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l  101 (476)
T KOG0376|consen   73 KAYVRRGTAVMALGEFKKALLDLEKVKKL  101 (476)
T ss_pred             heeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence            88999999999999999999999887764

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=95.96  E-value=0.62  Score=36.97  Aligned_cols=182  Identities=14%  Similarity=0.060  Sum_probs=100.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH-hhhcHHHHHHHHHHHHHHHHHhhCCCCcc
Q 016114          191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS-RSKNFVEAERLLRICLDIMTKTVGPDDQS  269 (395)
Q Consensus       191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  269 (395)
                      ..+|.+....|+|++...++++++...       ......-.+.++.+|- ..|....+...+........   +..++.
T Consensus         5 i~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~---~~~~~~   74 (236)
T PF00244_consen    5 IYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE---NKGNEK   74 (236)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc---ccchhH
Confidence            568899999999999999999988761       1112223334444442 23444444444433322111   111111


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH-HHHHHHHHc-----CC----chhHHHHHH
Q 016114          270 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD--SLPVGEALD-CLVSIQTRL-----GE----DDTKLLELL  337 (395)
Q Consensus       270 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~-~l~~~~~~~-----~~----~~~~A~~~~  337 (395)
                      ..    .+..-|.. .=-++=......++.+....+-|.  .+.....+. ..|..|.-.     |+    ..++|...|
T Consensus        75 ~~----~~i~~yk~-kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY  149 (236)
T PF00244_consen   75 QV----KLIKDYKK-KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAY  149 (236)
T ss_dssp             HH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             HH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhh
Confidence            11    11111111 111223344555555555433222  222211122 133333211     11    113899999


Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHH-hcchhhhchhhHHHHHHHH
Q 016114          338 KRVLRIQEREFGSESEEVMLTLKKVVSYLDK-LGRKEEKFPLKKRLSNLRM  387 (395)
Q Consensus       338 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~  387 (395)
                      ++|+++....+++.+|.......+.+..|+. .|+.++|+.+.+++..-.-
T Consensus       150 ~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~  200 (236)
T PF00244_consen  150 EEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI  200 (236)
T ss_dssp             HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            9999999998899999999888888887754 8999999999888876543

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.95  E-value=0.88  Score=38.62  Aligned_cols=195  Identities=17%  Similarity=0.122  Sum_probs=133.1

Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      +-....+.....+.++....++..|...+.+..-.+.+  +.+......++..++.++.+.+..-.+..+.-.++....+
T Consensus       268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se  345 (482)
T KOG4322|consen  268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE  345 (482)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence            34455667777899999999999999999988765543  2234456677788888888888888888887777776654


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhH-----HHHHHHHHHHHHhhhcHHHHHH
Q 016114          176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF-----VTHLLNLAASYSRSKNFVEAER  250 (395)
Q Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-----~~~~~~la~~~~~~~~~~~A~~  250 (395)
                      -   . .+...+..-.+++......|-.++|...+..++....-..|-+....     +.++..-+.. ....+.+.+.+
T Consensus       346 y---~-ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s-~~~e~ld~~~~  420 (482)
T KOG4322|consen  346 Y---S-LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALS-CANESLDGFPR  420 (482)
T ss_pred             h---c-cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhh-hhhhhHHhhHH
Confidence            2   2 22223344467888899999999999999999887654433221110     1111111111 15567888888


Q ss_pred             HHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHH---HHHHHHHHHH
Q 016114          251 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE---AEKLVLEALY  299 (395)
Q Consensus       251 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~  299 (395)
                      +++++-+++.+.  ..+..+..+.+.++..|-..|+.++   +...|+++..
T Consensus       421 ~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~  470 (482)
T KOG4322|consen  421 YLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR  470 (482)
T ss_pred             HHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence            899888887776  4456677888899999999998654   4445555543

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=95.79  E-value=0.78  Score=36.83  Aligned_cols=91  Identities=15%  Similarity=0.105  Sum_probs=68.8

Q ss_pred             CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHH
Q 016114          158 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  237 (395)
Q Consensus       158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  237 (395)
                      .-...++.+.+|.+.++..    ........+...+|..|...|++++|.++++.+...+++..  ...-...++..+..
T Consensus       153 hs~~iI~lL~~A~~~f~~~----~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg--W~~l~~~~l~~l~~  226 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKY----GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG--WWSLLTEVLWRLLE  226 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHH
Confidence            4456688889999888764    33556666778999999999999999999999977665432  23445566778888


Q ss_pred             HHHhhhcHHHHHHHHHH
Q 016114          238 SYSRSKNFVEAERLLRI  254 (395)
Q Consensus       238 ~~~~~~~~~~A~~~~~~  254 (395)
                      ++...|+.+..+.+.-+
T Consensus       227 Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  227 CAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             HHHHhCCHHHHHHHHHH
Confidence            99999998887765544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.78  E-value=0.21  Score=33.52  Aligned_cols=102  Identities=20%  Similarity=0.104  Sum_probs=60.6

Q ss_pred             HHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHc----CChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114           65 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE----GKAVDAESVFSRILKIYTKVYGENDG  140 (395)
Q Consensus        65 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~  140 (395)
                      .+..++..|++-+|+++.+..+.....     +......+..-|.++..+    .+.+-=..++.-+++-+.+.. .-.|
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~-~Lsp   75 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGE-----DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAV-ELSP   75 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccC-----CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHh-ccCh
Confidence            356788999999999999998776322     222224455556666443    344433444444444443332 1255


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      ..+..++.+|.-+.....|+++..-.++++.+
T Consensus        76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            66777777777666666666666666666553

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.67  E-value=0.45  Score=34.57  Aligned_cols=87  Identities=18%  Similarity=0.203  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCC
Q 016114          186 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  265 (395)
Q Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  265 (395)
                      +...+..+..+-...++.+++..++.-. ...       .|.....-..-|.++...|+|.+|+.+++....        
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~AL-rvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~--------   72 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDAL-RVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE--------   72 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHH-HHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc--------
Confidence            3445567777777888999988877643 332       355555666788999999999999999998654        


Q ss_pred             CCcchHHHHHHHHHHHHhcCChH
Q 016114          266 DDQSISFPMLHLGITLYHLNRDK  288 (395)
Q Consensus       266 ~~~~~~~~~~~la~~~~~~g~~~  288 (395)
                      ..+....+--.++.|+..+|+.+
T Consensus        73 ~~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   73 RAPGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             cCCCChHHHHHHHHHHHHcCChH
Confidence            45666666677888998888864

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.65  E-value=0.024  Score=48.20  Aligned_cols=95  Identities=11%  Similarity=0.075  Sum_probs=80.8

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      +-.-+..++.-+.|+.|+..|.+|+++        +|..+..+.+.+..+...+++..|+.-+.++++.        +|.
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~   70 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPT   70 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cch
Confidence            345667788889999999999999987        3444555666778889999999999999999886        588


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      ...+|..-|..+...+++.+|...|+....+
T Consensus        71 ~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l  101 (476)
T KOG0376|consen   71 YIKAYVRRGTAVMALGEFKKALLDLEKVKKL  101 (476)
T ss_pred             hhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence            8999999999999999999999999988766

>PRK14707 hypothetical protein; Provisional

Probab=95.62  E-value=3.4  Score=42.99  Aligned_cols=299  Identities=11%  Similarity=0.023  Sum_probs=160.4

Q ss_pred             HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhh--HHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 016114           64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP--LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  141 (395)
Q Consensus        64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  141 (395)
                      .+++++...++|.++..+-.-+..+.....  ..+.....  -..++.++...+++.+...+-.-+..+...+.  +++.
T Consensus       836 ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa--~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~--~d~~  911 (2710)
T PRK14707        836 HVATVLNAMSKWPDNAVCAAAAGAMAERLA--DEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLA--DEPE  911 (2710)
T ss_pred             HHHHHHHHhccCCCchHHHHHHHHHHHHHh--cChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHh--cCHH
Confidence            466777777888877777766666665543  23333222  33467778888888888888777777777664  3343


Q ss_pred             HHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHH--HHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114          142 VGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM--RIDLAELLHIVGRGQEGRELLEECLLIT  217 (395)
Q Consensus       142 ~~~--~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~  217 (395)
                      ...  .-..+++++-...+|.++-.+-.-+..+....   ..+ +.+...  -..++.++...+++-+...+-.-+..+.
T Consensus       912 Lrqal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rL---a~d-~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA  987 (2710)
T PRK14707        912 LRKALSAHRVATALNALSKWPDIPVCATAASALAERL---SDD-PDLREALDASNLPQVLNALSKWPDVPAGGEVVDALA  987 (2710)
T ss_pred             HHhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHh---ccC-hhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence            333  23466777777777776555544444444432   111 111111  1346777777788777666555555554


Q ss_pred             HhhhCCCChhHHHH--HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHH--HHHHHHHHHHhcCChHHHHHH
Q 016114          218 EKYKGKEHPSFVTH--LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF--PMLHLGITLYHLNRDKEAEKL  293 (395)
Q Consensus       218 ~~~~~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~  293 (395)
                      ....  +++.....  -..++.++....+|.++-.+-.-+..+...+.  ..+....  .-..++.++...++|.+.-.+
T Consensus       988 ~rL~--~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa--~ep~L~~amdaQ~lan~LNALSKWPde~~C 1063 (2710)
T PRK14707        988 ERLV--DEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS--NDPGLCKALSSQGLTTVLNALCKWPEMPVC 1063 (2710)
T ss_pred             HHHh--ccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc--cCHhhhhhcchHHHHHHHHhhccCCCchhH
Confidence            4432  11221111  22455666666677665555555555555442  2222222  123567777777777765555


Q ss_pred             HHHHHHHHHHHcCCCChHH--HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc
Q 016114          294 VLEALYIREIAFGKDSLPV--GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR  371 (395)
Q Consensus       294 ~~~al~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  371 (395)
                      -.-+..+.....  +++..  ...-..++.++....++. +.-.+-+-++.+...+-...++........++.++-...+
T Consensus      1064 r~Aa~aLA~rL~--~d~~Lr~Al~aQ~vAN~LNaLSKWP-~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSK 1140 (2710)
T PRK14707       1064 LAAASALAERLS--DDLVLRNALDSQGFGNALNALSKWP-DSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSK 1140 (2710)
T ss_pred             HHHHHHHHHHhh--ccHHHHHhhchHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhc
Confidence            544444444332  22221  122234566666666665 4445555566666555444444333334455555555555


Q ss_pred             hhhhch
Q 016114          372 KEEKFP  377 (395)
Q Consensus       372 ~~~A~~  377 (395)
                      |.....
T Consensus      1141 Wp~~~~ 1146 (2710)
T PRK14707       1141 WPGTQA 1146 (2710)
T ss_pred             CCCchH
Confidence            554333

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.58  E-value=0.0065  Score=49.08  Aligned_cols=91  Identities=21%  Similarity=0.143  Sum_probs=79.0

Q ss_pred             HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 016114           66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  145 (395)
Q Consensus        66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  145 (395)
                      +.-.+..|.+++|++.|..++.+        .|..+..+...+.++..+++...|+.-+..++.+        +++.+.-
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~  184 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKG  184 (377)
T ss_pred             HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccc
Confidence            45556788999999999999876        6777888999999999999999999999999987        5666677


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          146 MCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       146 ~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      +-..+.....+|++++|...+..+.++
T Consensus       185 ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  185 YKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             cchhhHHHHHhhchHHHHHHHHHHHhc
Confidence            777888899999999999999998875

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.45  E-value=1.4  Score=37.53  Aligned_cols=154  Identities=14%  Similarity=0.084  Sum_probs=100.7

Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc-------------------ccCCCCchHHHHHHHHHHHHHHH
Q 016114          139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS-------------------NYMSLDDSIMENMRIDLAELLHI  199 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~la~~~~~  199 (395)
                      +|.-..++..++.++..+|++..|.+++++|+-.++..                   .+..+.+.....+.......+.+
T Consensus        36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~  115 (360)
T PF04910_consen   36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR  115 (360)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence            56677889999999999999999999999998766532                   01112233444556677788889


Q ss_pred             cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 016114          200 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  279 (395)
Q Consensus       200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  279 (395)
                      .|-+..|.++.+-.+.+-    ...+|.  .++..+=....+.++++--++.++.......+..-..-|   ...+..+.
T Consensus       116 RG~~rTAlE~~KlLlsLd----p~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP---n~a~S~aL  186 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSLD----PDEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP---NFAFSIAL  186 (360)
T ss_pred             cCcHHHHHHHHHHHHhcC----CCCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc---cHHHHHHH
Confidence            999999999998877752    111333  233344444556677766666665543310000000122   23456677


Q ss_pred             HHHhcCCh---------------HHHHHHHHHHHHHH
Q 016114          280 TLYHLNRD---------------KEAEKLVLEALYIR  301 (395)
Q Consensus       280 ~~~~~g~~---------------~~A~~~~~~al~~~  301 (395)
                      ++...++-               ++|...+.+|+..+
T Consensus       187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f  223 (360)
T PF04910_consen  187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF  223 (360)
T ss_pred             HHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence            77777777               89999999998765

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=95.29  E-value=1.3  Score=36.16  Aligned_cols=129  Identities=16%  Similarity=0.139  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh
Q 016114          163 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS  242 (395)
Q Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  242 (395)
                      ++-+++.++-..+.    ........++.+.|..|.+.|+-+.|.+.+.+..+-.....  ...+...+...+|..|...
T Consensus        84 i~eld~~iedaeen----lGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~  157 (393)
T KOG0687|consen   84 IKELDEKIEDAEEN----LGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDH  157 (393)
T ss_pred             HHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccH
Confidence            34444444444432    12344567788999999999999999999998776544332  3345666777888888765


Q ss_pred             hcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114          243 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  302 (395)
Q Consensus       243 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  302 (395)
                      .-..+.++   ++-.+.++  |.+....-..-..-|.......++.+|..+|-.++..+.
T Consensus       158 ~lV~~~ie---kak~liE~--GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt  212 (393)
T KOG0687|consen  158 DLVTESIE---KAKSLIEE--GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT  212 (393)
T ss_pred             HHHHHHHH---HHHHHHHh--CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence            44443333   33333332  222222222233446666778899999998888776543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.24  E-value=0.021  Score=32.59  Aligned_cols=37  Identities=19%  Similarity=0.024  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhhh
Q 016114          357 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKV  393 (395)
Q Consensus       357 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  393 (395)
                      +.++.+|..+.+.|++++|..+.+.++++.|+..+..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            4578899999999999999999999999998877654

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.14  E-value=1.6  Score=36.20  Aligned_cols=166  Identities=17%  Similarity=0.209  Sum_probs=106.8

Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh----CchhHHHHHHHHHHHHHHHhcCCCChhhhhh
Q 016114           28 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI----GRAKKAVEIYHRVITILELNRGTESADLVLP  103 (395)
Q Consensus        28 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  103 (395)
                      ...+++..+...+..+-..       ..+   .....++.+|...    .+..+|..+|+.+.+          ......
T Consensus        52 ~~~~~~~~a~~~~~~a~~~-------~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a  111 (292)
T COG0790          52 AYPPDYAKALKSYEKAAEL-------GDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEA  111 (292)
T ss_pred             cccccHHHHHHHHHHhhhc-------CCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHH
Confidence            3556777777777776541       111   4556666666543    457778888874433          244567


Q ss_pred             HHhHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHH
Q 016114          104 LFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-------NAEEAVELYKKALRV  172 (395)
Q Consensus       104 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~a~~~  172 (395)
                      .+.+|.+|..    ..+..+|..+|.++...       .++.-..+...++.+|..-.       +...|...|.++-..
T Consensus       112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~  184 (292)
T COG0790         112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL  184 (292)
T ss_pred             HHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence            7778988877    45899999999999875       22322345677777776642       223677777777654


Q ss_pred             HHhcccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh
Q 016114          173 IKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK  243 (395)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~  243 (395)
                      .            ...+...+|.+|..    ..++.+|..+|.++-+.       .+   ......++ ++...|
T Consensus       185 ~------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g  236 (292)
T COG0790         185 G------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG  236 (292)
T ss_pred             c------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence            2            13455778877755    33789999999998764       22   45666777 555555

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.01  E-value=0.81  Score=33.31  Aligned_cols=89  Identities=18%  Similarity=0.129  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114           56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  135 (395)
Q Consensus        56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  135 (395)
                      ...+..+..+..+-...++.+++...+.-..-+        .|.....-..-|.++...|++.+|+..++....      
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------   72 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE------   72 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc------
Confidence            355666777777888888999998887654443        567777778889999999999999999998643      


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHH
Q 016114          136 GENDGRVGMAMCSLAHAKCANGNAE  160 (395)
Q Consensus       136 ~~~~~~~~~~~~~la~~~~~~g~~~  160 (395)
                        ..+....+-..++.++...|+.+
T Consensus        73 --~~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   73 --RAPGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             --cCCCChHHHHHHHHHHHHcCChH
Confidence              24444445556788888888764

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.93  E-value=0.017  Score=46.77  Aligned_cols=94  Identities=14%  Similarity=0.044  Sum_probs=79.3

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh
Q 016114           21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  100 (395)
Q Consensus        21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  100 (395)
                      ...+.-.+..|.+++|++.|..++.+        .|..+..+...+.++..+++...|+.-+..++.+        +++.
T Consensus       118 k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Ds  181 (377)
T KOG1308|consen  118 KVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDS  181 (377)
T ss_pred             HHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Cccc
Confidence            44555677889999999999999875        3555667888899999999999999999999887        5677


Q ss_pred             hhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          101 VLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus       101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      +.-|-..+.....+|++.+|...+..+.++
T Consensus       182 a~~ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  182 AKGYKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             ccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence            777777888899999999999999998876

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=94.91  E-value=0.1  Score=45.76  Aligned_cols=96  Identities=21%  Similarity=0.281  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      ++..|..|...|+...|+.++..|+.....       .....+.+++.+....|-..+|-.++.+++.+.        ..
T Consensus       610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~-------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~s  674 (886)
T KOG4507|consen  610 LNEAGLYWRAVGNSTFAIACLQRALNLAPL-------QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SS  674 (886)
T ss_pred             eecccceeeecCCcHHHHHHHHHHhccChh-------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------cc
Confidence            344566777899999999999999875322       223346788999999999999999999999884        12


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      .+-..+.+|..+....+.+.|++.|.+|++.
T Consensus       675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~  705 (886)
T KOG4507|consen  675 EPLTFLSLGNAYLALKNISGALEAFRQALKL  705 (886)
T ss_pred             CchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence            2345778899999999999999999999986

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.86  E-value=1.6  Score=35.00  Aligned_cols=135  Identities=18%  Similarity=0.087  Sum_probs=86.1

Q ss_pred             CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHH
Q 016114          157 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA  236 (395)
Q Consensus       157 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  236 (395)
                      ..-++-++-+.+.++-.+..    ........++.++|..|...++.+.+.+++.+.+.-.....  -..+...+...+|
T Consensus        89 kkneeki~Elde~i~~~eed----ngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg  162 (412)
T COG5187          89 KKNEEKIEELDERIREKEED----NGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLG  162 (412)
T ss_pred             HhhHHHHHHHHHHHHHHhhc----ccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHH
Confidence            33455566666666554432    12344567889999999999999999999998877554332  3345556667888


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114          237 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  302 (395)
Q Consensus       237 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  302 (395)
                      .+|..+.-.++.++.....++   +  |.+....-..-...|.......++.+|..++-..+..+.
T Consensus       163 ~~y~d~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~  223 (412)
T COG5187         163 LIYGDRKVVEESLEVADDIIE---K--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE  223 (412)
T ss_pred             HhhccHHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence            888777666666555554444   2  222222222233446666777888888888877766543

>smart00028 TPR Tetratricopeptide repeats

Probab=94.83  E-value=0.048  Score=26.90  Aligned_cols=29  Identities=21%  Similarity=0.629  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINV   46 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~   46 (395)
                      .++..+|.++...|++++|...+++++++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            45788999999999999999999998865

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.71  E-value=2.4  Score=36.18  Aligned_cols=196  Identities=14%  Similarity=0.070  Sum_probs=132.7

Q ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114          138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  217 (395)
Q Consensus       138 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  217 (395)
                      +-....+.....+.++....++..|...+.+..-.+.+    +........+...++.++.+.+..-.+..+.-.++...
T Consensus       268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k----~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~  343 (482)
T KOG4322|consen  268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK----GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKR  343 (482)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            33444566777899999999999999999988765543    34455667777888888888888778887777776665


Q ss_pred             HhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc-----hHHHHHHHHHHHHhcCChHHHHH
Q 016114          218 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-----ISFPMLHLGITLYHLNRDKEAEK  292 (395)
Q Consensus       218 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~  292 (395)
                      .+..  .+......-..++..+...|-.+.|...+..++....-..|-++..     .+.++..-+..+ ...+.+.+..
T Consensus       344 sey~--ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~  420 (482)
T KOG4322|consen  344 SEYS--LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPR  420 (482)
T ss_pred             HHhc--cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHH
Confidence            5432  2222334455788888899999999999999988655443322111     111111112222 4567788888


Q ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchh--HHHHHHHHHHH
Q 016114          293 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT--KLLELLKRVLR  342 (395)
Q Consensus       293 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~A~~~~~~al~  342 (395)
                      +++++-++..+.  .-+..+.++.+.++..|-..|+.++  ++...|+++..
T Consensus       421 ~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~  470 (482)
T KOG4322|consen  421 YLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR  470 (482)
T ss_pred             HHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence            888888887765  4566677888899999999998751  44455555543

>smart00028 TPR Tetratricopeptide repeats

Probab=94.71  E-value=0.018  Score=28.60  Aligned_cols=31  Identities=19%  Similarity=0.144  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114          357 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  387 (395)
Q Consensus       357 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  387 (395)
                      .++..+|.++...|++++|...+++++.+.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            3577899999999999999999999987654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.53  E-value=1.6  Score=33.23  Aligned_cols=77  Identities=17%  Similarity=0.205  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHH
Q 016114          117 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL  196 (395)
Q Consensus       117 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~  196 (395)
                      -++|...|.++-       +......+.....+|..|. ..+.++|+.++-+++++...      +...-..++..|+.+
T Consensus       122 d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~------~~~~n~eil~sLas~  187 (203)
T PF11207_consen  122 DQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP------DDNFNPEILKSLASI  187 (203)
T ss_pred             cHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC------CCCCCHHHHHHHHHH
Confidence            355666555442       3334456777888887776 67899999999999998643      222224556889999


Q ss_pred             HHHcCChHHHH
Q 016114          197 LHIVGRGQEGR  207 (395)
Q Consensus       197 ~~~~g~~~~A~  207 (395)
                      +...|+++.|-
T Consensus       188 ~~~~~~~e~AY  198 (203)
T PF11207_consen  188 YQKLKNYEQAY  198 (203)
T ss_pred             HHHhcchhhhh
Confidence            99999999875

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.46  E-value=0.034  Score=26.29  Aligned_cols=25  Identities=20%  Similarity=0.100  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHhcchhhhchhhHH
Q 016114          357 LTLKKVVSYLDKLGRKEEKFPLKKR  381 (395)
Q Consensus       357 ~~~~~la~~~~~~g~~~~A~~~~~~  381 (395)
                      .+...+|.++..+|++++|...+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            3567899999999999999988763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=94.46  E-value=2.1  Score=34.40  Aligned_cols=186  Identities=12%  Similarity=0.025  Sum_probs=110.4

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCc---Ch-------HHHHHHHHHHHHHHHhhC--------------chh
Q 016114           21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGK---TS-------ILLVTSLLGMAKVLGSIG--------------RAK   76 (395)
Q Consensus        21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~-------~~~~~~~~~l~~~~~~~g--------------~~~   76 (395)
                      +.+..+++..|+..+|+.-+++=+....+..++   ..       ...+.-+..+|.......              -|.
T Consensus        14 ~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy~   93 (247)
T PF11817_consen   14 FKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYYQ   93 (247)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHHH
Confidence            567789999999999999999988888776544   11       112222333444433222              122


Q ss_pred             HHHHHHHHHHHHHHHhcC-CC-Ch-h-----------------hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114           77 KAVEIYHRVITILELNRG-TE-SA-D-----------------LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        77 ~A~~~~~~al~~~~~~~~-~~-~~-~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  136 (395)
                      .|-.+...-...++.... |+ .+ .                 ....+......-.....-...++++.+|+..+.+.. 
T Consensus        94 ~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~-  172 (247)
T PF11817_consen   94 IAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG-  172 (247)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc-
Confidence            232222222222333210 01 00 0                 000000000001112234456788888888877642 


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114          137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  212 (395)
Q Consensus       137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  212 (395)
                       ...........+|..|...|++++|..+++.+...+++    ..-......++..+..++...|+.+..+.+.-+
T Consensus       173 -~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~----egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  173 -QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR----EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             -cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh----CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence             23445556778999999999999999999999887765    244556677778899999999998877665433

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.45  E-value=0.067  Score=25.26  Aligned_cols=24  Identities=29%  Similarity=0.261  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHH
Q 016114          272 FPMLHLGITLYHLNRDKEAEKLVL  295 (395)
Q Consensus       272 ~~~~~la~~~~~~g~~~~A~~~~~  295 (395)
                      .+...+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356789999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.45  E-value=0.49  Score=27.08  Aligned_cols=30  Identities=23%  Similarity=0.194  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          272 FPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       272 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      .+++.+|..+.+.|++++|..+.+.++++.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e   31 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE   31 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            356889999999999999999999999865

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.35  E-value=0.16  Score=35.35  Aligned_cols=75  Identities=12%  Similarity=0.001  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHh
Q 016114          313 GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG-SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  391 (395)
Q Consensus       313 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  391 (395)
                      ..+.++++.++.+..+.+     ..++.+.+++.++. .......+.++.|+..+.+.++|++++.+....++..++..+
T Consensus        32 ~~s~f~lAwaLV~S~~~~-----dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q  106 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTE-----DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ  106 (149)
T ss_pred             HHHHHHHHHHHHcccchH-----HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence            456788888888877654     23444555555443 233345677889999999999999999999998888776655


Q ss_pred             h
Q 016114          392 K  392 (395)
Q Consensus       392 ~  392 (395)
                      +
T Consensus       107 a  107 (149)
T KOG3364|consen  107 A  107 (149)
T ss_pred             H
Confidence            4

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.30  E-value=1.5  Score=32.25  Aligned_cols=123  Identities=12%  Similarity=-0.068  Sum_probs=81.6

Q ss_pred             hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH--HHH
Q 016114          242 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEAL--DCL  319 (395)
Q Consensus       242 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~l  319 (395)
                      .+..++|+.-|...-+    .  .....-..+....+.+....|+...|+..|.++-.-      ...|....-+  ..-
T Consensus        71 ~~k~d~Alaaf~~lek----t--g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlra  138 (221)
T COG4649          71 ENKTDDALAAFTDLEK----T--GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLRA  138 (221)
T ss_pred             cCCchHHHHHHHHHHh----c--CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHHH
Confidence            4566677766654432    1  111222345677889999999999999999876442      1223333222  233


Q ss_pred             HHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHH
Q 016114          320 VSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  384 (395)
Q Consensus       320 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  384 (395)
                      +.++...|.++        ......+.+-++.+|-...+...||..-.+.|++.+|..+|.+...
T Consensus       139 a~lLvD~gsy~--------dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         139 AYLLVDNGSYD--------DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHhccccHH--------HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            44555666555        3444444555678888888999999999999999999999998764

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=93.94  E-value=4.1  Score=35.77  Aligned_cols=178  Identities=13%  Similarity=-0.081  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcH-------HHHHHHHHHHHHHHHH
Q 016114          189 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF-------VEAERLLRICLDIMTK  261 (395)
Q Consensus       189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------~~A~~~~~~a~~~~~~  261 (395)
                      ....+|...+..|+|+-|...|+.+..-+....  .....+.+....|.+....+..       ++...+++.++..+.+
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk--aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~  287 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK--AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK  287 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch--hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence            346799999999999999999998877553211  1223344444555555555532       4777888888887776


Q ss_pred             hhC---CCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH---HHHHHHHHHHHH--HHcCCchhHH
Q 016114          262 TVG---PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP---VGEALDCLVSIQ--TRLGEDDTKL  333 (395)
Q Consensus       262 ~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~l~~~~--~~~~~~~~~A  333 (395)
                      ...   ........+....+.++...|.+.+|...+-+.....-    .....   .+..+..++.++  ....... .-
T Consensus       288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~~~~~~~~~~-~~  362 (414)
T PF12739_consen  288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCYASLRSNRPS-PG  362 (414)
T ss_pred             hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhhcccccCCCC-cc
Confidence            321   11224556777788888889998888777666655421    01111   334455555555  2221110 00


Q ss_pred             HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114          334 LELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  388 (395)
Q Consensus       334 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  388 (395)
                      ..-+               ...+--+..-|.-|...|+...|..+|.+++.+.+.
T Consensus       363 ~~r~---------------RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  363 LTRF---------------RKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG  402 (414)
T ss_pred             chhh---------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence            0001               122233344567889999999999999999887653

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.73  E-value=3.7  Score=34.57  Aligned_cols=148  Identities=13%  Similarity=0.069  Sum_probs=89.8

Q ss_pred             CChhhhhhHHhHHHHHHHcCC------------hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 016114           96 ESADLVLPLFSLGSLFIKEGK------------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV  163 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  163 (395)
                      .+|....++..+.......-.            .+.-+.++++|++.        +|.....+..+-.......+.++..
T Consensus        14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen   14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            355556666655544433322            23344555666554        2333333333334445666777777


Q ss_pred             HHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC----------ChhHHHHHH
Q 016114          164 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE----------HPSFVTHLL  233 (395)
Q Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~  233 (395)
                      +-+++++..       .+....+...|...-..-...-.++.....|.+++..........          ......++.
T Consensus        86 ~~we~~l~~-------~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~  158 (321)
T PF08424_consen   86 KKWEELLFK-------NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL  158 (321)
T ss_pred             HHHHHHHHH-------CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence            777777764       344455444444433333444568899999999988776554322          223456677


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114          234 NLAASYSRSKNFVEAERLLRICLDI  258 (395)
Q Consensus       234 ~la~~~~~~~~~~~A~~~~~~a~~~  258 (395)
                      .+.......|..+.|+..++-.+++
T Consensus       159 r~~~fl~~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  159 RLCRFLRQAGYTERAVALWQALLEF  183 (321)
T ss_pred             HHHHHHHHCCchHHHHHHHHHHHHH
Confidence            7888888999999999999998885

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.65  E-value=1.9  Score=30.97  Aligned_cols=85  Identities=14%  Similarity=0.104  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC
Q 016114          188 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD  267 (395)
Q Consensus       188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  267 (395)
                      ..+..+...-...++.+++..++... ...       .|.....-..-|.++...|+|.+|+..++...+        +.
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdAL-rvL-------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~--------~~   74 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDAL-RVL-------RPNLKELDMFDGWLLIARGNYDEAARILRELLS--------SA   74 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHH-HHh-------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc--------cC
Confidence            33445555555688888888877643 332       244444555678899999999999999988765        23


Q ss_pred             cchHHHHHHHHHHHHhcCChH
Q 016114          268 QSISFPMLHLGITLYHLNRDK  288 (395)
Q Consensus       268 ~~~~~~~~~la~~~~~~g~~~  288 (395)
                      +......-.++.|+..+||.+
T Consensus        75 ~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        75 GAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             CCchHHHHHHHHHHHhcCChH
Confidence            333445566788888888754

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.60  E-value=0.78  Score=38.64  Aligned_cols=107  Identities=14%  Similarity=0.091  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh--
Q 016114           15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN--   92 (395)
Q Consensus        15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--   92 (395)
                      .+..++..+|..|...|+++.|+..|.++.+.+..     ....+..+.++-.+-...|+|..-..+..+|.......  
T Consensus       148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~  222 (466)
T KOG0686|consen  148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN  222 (466)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence            34667889999999999999999999998776543     34677788888888889999998888888877652100  


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  128 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  128 (395)
                      ....-+....+..  |.+....++|..|..+|-.+.
T Consensus       223 ~~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  223 LAQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             HHHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhCC
Confidence            0001122233444  444455568999888886653

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.55  E-value=5.6  Score=36.08  Aligned_cols=106  Identities=16%  Similarity=0.178  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      ..++.+-+.-.+...+|..++++|...+......  ..+...+.....++.||....+.+.|.+++++|-+.        
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--------  423 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--------  423 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence            3445566777788899999999999998765432  223456788899999999999999999999998775        


Q ss_pred             ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114           97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  132 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  132 (395)
                      +|...-....+..+....|.-++|+...........
T Consensus       424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED  459 (872)
T ss_pred             ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence            344444555566667778888899888877766543

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=93.50  E-value=4.9  Score=35.27  Aligned_cols=179  Identities=16%  Similarity=0.037  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHH
Q 016114          144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG-------QEGRELLEECLLI  216 (395)
Q Consensus       144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~  216 (395)
                      .....+|.+++..|+|+-|...|+.+.+-+..    .......+.+....|.+....+..       ++...+++.|+..
T Consensus       209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~----Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~  284 (414)
T PF12739_consen  209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKN----DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYT  284 (414)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh----chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHH
Confidence            35678999999999999999999998886643    123344555666666666666643       4777888888887


Q ss_pred             HHhhhC---CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc---hHHHHHHHHHHH--HhcCChH
Q 016114          217 TEKYKG---KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS---ISFPMLHLGITL--YHLNRDK  288 (395)
Q Consensus       217 ~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~  288 (395)
                      +.+...   ........+....+.++...|.+.+|...+-+.....-    .....   .+..+..+|.++  .......
T Consensus       285 Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~~~~~~~~~~  360 (414)
T PF12739_consen  285 YLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCYASLRSNRPS  360 (414)
T ss_pred             HHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhhcccccCCCC
Confidence            766321   11224455667778888888998888777666554311    01111   333444555555  1110000


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114          289 EAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  346 (395)
Q Consensus       289 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  346 (395)
                      .-..               .....+.-+..-|.-|.+.|+.. .|..+|.+++.++..
T Consensus       361 ~~~~---------------r~RK~af~~vLAg~~~~~~~~~~-~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  361 PGLT---------------RFRKYAFHMVLAGHRYSKAGQKK-HALRCYKQALQVYEG  402 (414)
T ss_pred             ccch---------------hhHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHhCC
Confidence            0000               01122223344577899999999 999999999998864

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=93.46  E-value=1.7  Score=29.79  Aligned_cols=73  Identities=14%  Similarity=0.058  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcCh---H----HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS---I----LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      +..+|...+..+++-.++-.|++|+.+.++....+.   .    ..+....++|..+...|+.+-.+++++-|-+.....
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            456888999999999999999999999877631111   1    234567899999999999999999998887665443

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.31  E-value=3.1  Score=35.33  Aligned_cols=106  Identities=14%  Similarity=0.144  Sum_probs=73.6

Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-
Q 016114          141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK-  219 (395)
Q Consensus       141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-  219 (395)
                      .+-.++..+|.-|...|+++.|++.|.++...+..       ...+..++.++-.+-...|+|..-..+..+|...... 
T Consensus       148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~  220 (466)
T KOG0686|consen  148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-------AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDAN  220 (466)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhh
Confidence            35678899999999999999999999998877643       3455677788888888999998888888777664210 


Q ss_pred             -hhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114          220 -YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  255 (395)
Q Consensus       220 -~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  255 (395)
                       ......+....+...+  +....+++..|..+|-.+
T Consensus       221 ~~~~q~v~~kl~C~agL--a~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  221 ENLAQEVPAKLKCAAGL--ANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             hhHHHhcCcchHHHHHH--HHHHHHHHHHHHHHHHhC
Confidence             0001122233444444  444556888888877554

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.29  E-value=3.9  Score=33.49  Aligned_cols=111  Identities=12%  Similarity=-0.037  Sum_probs=70.8

Q ss_pred             chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhcc
Q 016114          269 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF  348 (395)
Q Consensus       269 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~  348 (395)
                      ..+.+...||.+|...++|..|...+.- +.........+.......+..++++|...++.. +|..+..++--..... 
T Consensus       101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~v-eae~~inRaSil~a~~-  177 (399)
T KOG1497|consen  101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKV-EAEAYINRASILQAES-  177 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHhhhcc-
Confidence            4556778899999999999998776642 222111111122334566788999999999988 8888887775433221 


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHH
Q 016114          349 GSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  383 (395)
Q Consensus       349 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  383 (395)
                       .+..-.......-|+++-..+++-||...|-+..
T Consensus       178 -~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels  211 (399)
T KOG1497|consen  178 -SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS  211 (399)
T ss_pred             -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2222223334445778888888888877666543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.19  E-value=0.21  Score=42.57  Aligned_cols=137  Identities=13%  Similarity=0.004  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhhhC----CC--ChhHHHHHH----HHHHHHHhhhcHHHHHHHHHHH
Q 016114          187 ENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKG----KE--HPSFVTHLL----NLAASYSRSKNFVEAERLLRIC  255 (395)
Q Consensus       187 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~----~~--~~~~~~~~~----~la~~~~~~~~~~~A~~~~~~a  255 (395)
                      ..++..+|..+... .+.-.|..++.++++.......    ..  .|....-+.    +...+-.-.++.++   .--++
T Consensus       245 iealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~---~Rmqa  321 (615)
T KOG0508|consen  245 IEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPDE---MRMQA  321 (615)
T ss_pred             HHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHH---HHHHH
Confidence            33444555555433 3466788888888877554110    01  111111111    11111111222221   22356


Q ss_pred             HHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc
Q 016114          256 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL  326 (395)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~  326 (395)
                      +-+.+.++|+.||++.......|-+|...|+++.-++++.-|+.+.++.+.|-.|.+...+...+.++...
T Consensus       322 LiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~m  392 (615)
T KOG0508|consen  322 LIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFM  392 (615)
T ss_pred             HHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Confidence            67778899999999887777889999999999999999999999999999999999988888888776543

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=93.19  E-value=1.9  Score=29.57  Aligned_cols=74  Identities=12%  Similarity=-0.006  Sum_probs=56.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHH-------HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114          274 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV-------GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  346 (395)
Q Consensus       274 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  346 (395)
                      +..+|......+++-.++-.|++|+.+.++....+..+.       ..+..+||..+...|+.+ -.+.+++-|-+.-..
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~-yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSD-YELKYLQLASEKVLT   82 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChH-HHHHHHHHHHHHHHH
Confidence            456788889999999999999999999888742222111       334668999999999999 888888877665444


Q ss_pred             cc
Q 016114          347 EF  348 (395)
Q Consensus       347 ~~  348 (395)
                      +.
T Consensus        83 Li   84 (140)
T PF10952_consen   83 LI   84 (140)
T ss_pred             hc
Confidence            43

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.11  E-value=4.2  Score=33.32  Aligned_cols=108  Identities=14%  Similarity=0.052  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Q 016114          227 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG  306 (395)
Q Consensus       227 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  306 (395)
                      ..+.+...||.+|.+.++|..|...+.-.-. -.-....+.......+..+|.+|...++..+|..+..++--.....  
T Consensus       101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~-~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~--  177 (399)
T KOG1497|consen  101 QVASIRLHLASIYEKEQNWRDAAQVLVGIPL-DTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES--  177 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhccCc-ccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc--
Confidence            4566778999999999999999877643211 0000001112334567789999999999999999988874433221  


Q ss_pred             CCChHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114          307 KDSLPVGEALDCLVSIQTRLGEDDTKLLELL  337 (395)
Q Consensus       307 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  337 (395)
                      .+..-....-..-|++.-..+++-+.|..+|
T Consensus       178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYy  208 (399)
T KOG1497|consen  178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYY  208 (399)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1212222233345666666777763444444

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.99  E-value=2.8  Score=30.98  Aligned_cols=149  Identities=17%  Similarity=0.116  Sum_probs=95.2

Q ss_pred             HHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 016114           67 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  146 (395)
Q Consensus        67 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  146 (395)
                      ..|+..+.-+.+-..|..++++.                       ..++.++|+.-|...-+.    .-..-|  ..+.
T Consensus        47 y~yw~~s~as~sgd~flaAL~lA-----------------------~~~k~d~Alaaf~~lekt----g~g~Yp--vLA~   97 (221)
T COG4649          47 YTYWQTSRASKSGDAFLAALKLA-----------------------QENKTDDALAAFTDLEKT----GYGSYP--VLAR   97 (221)
T ss_pred             eehhcccccccchHHHHHHHHHH-----------------------HcCCchHHHHHHHHHHhc----CCCcch--HHHH
Confidence            44566666666666666666653                       335566777666654332    111223  2356


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh
Q 016114          147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  226 (395)
Q Consensus       147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  226 (395)
                      ...+.+....|+-..|+..|.++-....     .|. ...-.+...-+.++...|.|++-....+       ...++.+|
T Consensus        98 mr~at~~a~kgdta~AV~aFdeia~dt~-----~P~-~~rd~ARlraa~lLvD~gsy~dV~srve-------pLa~d~n~  164 (221)
T COG4649          98 MRAATLLAQKGDTAAAVAAFDEIAADTS-----IPQ-IGRDLARLRAAYLLVDNGSYDDVSSRVE-------PLAGDGNP  164 (221)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHhccCC-----Ccc-hhhHHHHHHHHHHHhccccHHHHHHHhh-------hccCCCCh
Confidence            6778889999999999999988754211     111 1112233445667777888776544332       33455677


Q ss_pred             hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          227 SFVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       227 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                      ....+...||..-.+.|++.+|...|.+...
T Consensus       165 mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            7777888899999999999999999987765

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=92.89  E-value=1.7  Score=28.31  Aligned_cols=72  Identities=21%  Similarity=0.131  Sum_probs=44.8

Q ss_pred             CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114          267 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  346 (395)
Q Consensus       267 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  346 (395)
                      +|....+.+.+|..+...|++++|++.+-.++...        +..               +.+ .|...+-..+++   
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d--------r~~---------------~~~-~ar~~ll~~f~~---   70 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRD--------RDY---------------EDD-AARKRLLDIFEL---   70 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---------TTC---------------CCC-HHHHHHHHHHHH---
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------ccc---------------ccc-HHHHHHHHHHHH---
Confidence            56677888999999999999999988887766532        110               122 455444444433   


Q ss_pred             ccCCCCHHHHHHHHHHHHHH
Q 016114          347 EFGSESEEVMLTLKKVVSYL  366 (395)
Q Consensus       347 ~~~~~~~~~~~~~~~la~~~  366 (395)
                       +|+.+|.+......|+.++
T Consensus        71 -lg~~~plv~~~RRkL~~lL   89 (90)
T PF14561_consen   71 -LGPGDPLVSEYRRKLASLL   89 (90)
T ss_dssp             -H-TT-HHHHHHHHHHHHHH
T ss_pred             -cCCCChHHHHHHHHHHHHh
Confidence             3566777777777776654

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.87  E-value=4.8  Score=33.36  Aligned_cols=167  Identities=15%  Similarity=0.056  Sum_probs=108.1

Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcccCCCCchHH
Q 016114          111 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIM  186 (395)
Q Consensus       111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  186 (395)
                      ....+++..+...+.++-..       ..+   .....++.+|..    ..+..+|..+|+.+.+.         ..   
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~-------~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~---------g~---  108 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAEL-------GDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD---------GL---  108 (292)
T ss_pred             ccccccHHHHHHHHHHhhhc-------CCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc---------cc---
Confidence            34556777787777776542       112   456677777765    34678899988855442         11   


Q ss_pred             HHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh-------cHHHHHHHHHHH
Q 016114          187 ENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-------NFVEAERLLRIC  255 (395)
Q Consensus       187 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~a  255 (395)
                      .....++|..|..    ..++.+|..+|+++...       .++....+...++..|..-.       +...|...|.++
T Consensus       109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a  181 (292)
T COG0790         109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA  181 (292)
T ss_pred             HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence            2344678888877    44889999999998774       22222344667777776542       233677777776


Q ss_pred             HHHHHHhhCCCCcchHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC
Q 016114          256 LDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG  327 (395)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  327 (395)
                      ...          ....+...+|.+|..    ..++.+|..+|.++-+.       .+   ......++ ++...|
T Consensus       182 a~~----------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g  236 (292)
T COG0790         182 AEL----------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHh----------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence            652          144577888888865    34889999999998763       22   44567777 666555

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=92.86  E-value=3.6  Score=35.16  Aligned_cols=102  Identities=9%  Similarity=0.036  Sum_probs=75.7

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcCh------HH----HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114           22 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS------IL----LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   91 (395)
Q Consensus        22 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   91 (395)
                      .=|..++.+++|..|..-|..+++++.+......      .+    .......+..||...++.+-|+....+.+.+   
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l---  257 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL---  257 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc---
Confidence            3455667888999999999999988866421111      11    1223456889999999999999998888765   


Q ss_pred             hcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114           92 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  131 (395)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  131 (395)
                           +|....-+...|.++..+.+|.+|-..+--+.-++
T Consensus       258 -----nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy  292 (569)
T PF15015_consen  258 -----NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY  292 (569)
T ss_pred             -----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 56667777788999999999999988776665544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.60  E-value=8.2  Score=36.27  Aligned_cols=49  Identities=20%  Similarity=0.192  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114           39 VYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   88 (395)
Q Consensus        39 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   88 (395)
                      +|.-|+.+.+.. +.+.......+...|..++..|++++|...|-+++..
T Consensus       349 ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  349 LYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             hHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            344455555443 3344567788889999999999999999999988765

>PRK10941 hypothetical protein; Provisional

Probab=92.51  E-value=3.5  Score=33.50  Aligned_cols=79  Identities=14%  Similarity=0.019  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114          228 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  307 (395)
Q Consensus       228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  307 (395)
                      ....+.++-.+|...++++.|..+.+..+.+        .|+...-+...|.+|.+.|.+..|..-++..++..     |
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P  246 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----P  246 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----C
Confidence            3456778889999999999999999998874        34444556778999999999999999998888765     5


Q ss_pred             CChHHHHHHHHH
Q 016114          308 DSLPVGEALDCL  319 (395)
Q Consensus       308 ~~~~~~~~~~~l  319 (395)
                      +.|........+
T Consensus       247 ~dp~a~~ik~ql  258 (269)
T PRK10941        247 EDPISEMIRAQI  258 (269)
T ss_pred             CchhHHHHHHHH
Confidence            666554433333

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.50  E-value=3.9  Score=39.63  Aligned_cols=103  Identities=12%  Similarity=0.075  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHhhhC--CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh
Q 016114          206 GRELLEECLLITEKYKG--KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH  283 (395)
Q Consensus       206 A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  283 (395)
                      |.+.|++|+..++++..  +....--.+.+.+|.....+-.-..-.+.|.+|+..+....  +.+...--|..-|.+|.+
T Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  564 (932)
T PRK13184        487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH--GGVGAPLEYLGKALVYQR  564 (932)
T ss_pred             hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc--CCCCCchHHHhHHHHHHH
Confidence            44555555554444321  11223345666777776655443333366777777666663  344455556777889999


Q ss_pred             cCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 016114          284 LNRDKEAEKLVLEALYIREIAFGKDSLPVGEA  315 (395)
Q Consensus       284 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  315 (395)
                      .|++++-++++.-|++.+     +.||.....
T Consensus       565 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  591 (932)
T PRK13184        565 LGEYNEEIKSLLLALKRY-----SQHPEISRL  591 (932)
T ss_pred             hhhHHHHHHHHHHHHHhc-----CCCCccHHH
Confidence            999999999999999877     666765443

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=92.49  E-value=4.9  Score=32.57  Aligned_cols=207  Identities=15%  Similarity=0.073  Sum_probs=102.1

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHhhhCCCChhH
Q 016114          150 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ-EGRELLEECLLITEKYKGKEHPSF  228 (395)
Q Consensus       150 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~  228 (395)
                      +..+.+.|++..|.+...-.++.+.+.  ..+.+.   ....+++.+....+.-+ +-..+.++++... + .+......
T Consensus        17 a~~ll~~~Q~~sg~DL~~lliev~~~~--~~~~~~---~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~~~~Gd   89 (260)
T PF04190_consen   17 ALILLKHGQYGSGADLALLLIEVYEKS--EDPVDE---ESIARLIELISLFPPEEPERKKFIKAAIKWS-K-FGSYKFGD   89 (260)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHHHHHT--T---SH---HHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-H-TSS-TT--
T ss_pred             HHHHHHCCCcchHHHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-c-cCCCCCCC
Confidence            344455555666666555555555542  111111   11244555555554332 3456667777766 2 23333445


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHH--------HHHHhhCCCCcchHHHH-HHHHHHHHhcCChHHHHHHHHHHHH
Q 016114          229 VTHLLNLAASYSRSKNFVEAERLLRICLD--------IMTKTVGPDDQSISFPM-LHLGITLYHLNRDKEAEKLVLEALY  299 (395)
Q Consensus       229 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~--------~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~  299 (395)
                      ...+..+|..+.+.|++.+|..+|-.+-+        +.........+.....+ .....-|...++...|...+..-.+
T Consensus        90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~  169 (260)
T PF04190_consen   90 PELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS  169 (260)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            66788899999999999999988732211        11111111112222222 3333456778999999988887776


Q ss_pred             HHHHH----------cCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 016114          300 IREIA----------FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL  369 (395)
Q Consensus       300 ~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  369 (395)
                      ...+.          ..+..|.. .-...|-.+ ...+     +...|....+.++..+. .+|.....+..+|..|+..
T Consensus       170 ~~~~~~p~~~~~~~~~~~~~Pll-nF~~lLl~t-~e~~-----~~~~F~~L~~~Y~~~L~-rd~~~~~~L~~IG~~yFgi  241 (260)
T PF04190_consen  170 KLIESHPKLENSDIEYPPSYPLL-NFLQLLLLT-CERD-----NLPLFKKLCEKYKPSLK-RDPSFKEYLDKIGQLYFGI  241 (260)
T ss_dssp             HHHHH---EEEEEEEEESS-HHH-HHHHHHHHH-HHHT------HHHHHHHHHHTHH----HHHHTHHHHHHHHHHHH--
T ss_pred             HHhccCcchhccccCCCCCCchH-HHHHHHHHH-HhcC-----cHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHHHCCC
Confidence            53332          11222321 111122222 2222     33567666666655443 3467788889999999875


Q ss_pred             cc
Q 016114          370 GR  371 (395)
Q Consensus       370 g~  371 (395)
                      ..
T Consensus       242 ~~  243 (260)
T PF04190_consen  242 QP  243 (260)
T ss_dssp             -S
T ss_pred             CC
Confidence            54

; PDB: 3LKU_E 2WPV_G.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=92.44  E-value=7.5  Score=34.56  Aligned_cols=212  Identities=19%  Similarity=0.208  Sum_probs=116.0

Q ss_pred             HHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhcccCC
Q 016114          104 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVELYKKALRVIKDSNYMS  180 (395)
Q Consensus       104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~  180 (395)
                      +...+.++...|+...|...-.++..++++............+..++..-...-   .++.....+++++.+...     
T Consensus       289 l~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~-----  363 (656)
T KOG1914|consen  289 LIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDI-----  363 (656)
T ss_pred             HHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhcc-----
Confidence            344566777777766665555555555544321111222223333333222222   255566667776665322     


Q ss_pred             CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 016114          181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT  260 (395)
Q Consensus       181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  260 (395)
                       +...   ++.++-..-.+..-...|...|.+|-+.-.      .+..+.+...+-. |...++..-|...|+-.+..+ 
T Consensus       364 -~~tL---v~~~~mn~irR~eGlkaaR~iF~kaR~~~r------~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf-  431 (656)
T KOG1914|consen  364 -DLTL---VYCQYMNFIRRAEGLKAARKIFKKAREDKR------TRHHVFVAAALME-YYCSKDKETAFRIFELGLKKF-  431 (656)
T ss_pred             -CCce---ehhHHHHHHHHhhhHHHHHHHHHHHhhccC------CcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhc-
Confidence             2222   223344444455556778888887765321      1111222222222 456789999999999887732 


Q ss_pred             HhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 016114          261 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV  340 (395)
Q Consensus       261 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a  340 (395)
                          ++.|...   ......+...|+-..|..+|++++...     -........|..+-..-...|+.. ..+++-++-
T Consensus       432 ----~d~p~yv---~~YldfL~~lNdd~N~R~LFEr~l~s~-----l~~~ks~~Iw~r~l~yES~vGdL~-si~~lekR~  498 (656)
T KOG1914|consen  432 ----GDSPEYV---LKYLDFLSHLNDDNNARALFERVLTSV-----LSADKSKEIWDRMLEYESNVGDLN-SILKLEKRR  498 (656)
T ss_pred             ----CCChHHH---HHHHHHHHHhCcchhHHHHHHHHHhcc-----CChhhhHHHHHHHHHHHHhcccHH-HHHHHHHHH
Confidence                3344433   334556778899999999999998751     111233455666666667777776 565555555


Q ss_pred             HHHHH
Q 016114          341 LRIQE  345 (395)
Q Consensus       341 l~~~~  345 (395)
                      ...++
T Consensus       499 ~~af~  503 (656)
T KOG1914|consen  499 FTAFP  503 (656)
T ss_pred             HHhcc
Confidence            54444

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=92.43  E-value=0.31  Score=41.59  Aligned_cols=73  Identities=19%  Similarity=0.215  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114           61 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  133 (395)
Q Consensus        61 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  133 (395)
                      ++..+.+++.-.|+|..|++.++..---.+.......+-...+++.+|.+|..+++|.+|+..|...+-...+
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r  196 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR  196 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456678889999999999887653211111222334556678999999999999999999999998876544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.33  E-value=5.2  Score=32.52  Aligned_cols=77  Identities=17%  Similarity=0.064  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114          228 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  307 (395)
Q Consensus       228 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  307 (395)
                      ...++..++..+...|+++.+.+.+++.+.        .+|..-..+..+-..|...|+...|+..|++.-....+-+|.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~--------~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi  223 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIE--------LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI  223 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHh--------cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence            456788899999999999999999998877        467777888999999999999999999999998876666666


Q ss_pred             CChHH
Q 016114          308 DSLPV  312 (395)
Q Consensus       308 ~~~~~  312 (395)
                      +....
T Consensus       224 ~P~~~  228 (280)
T COG3629         224 DPAPE  228 (280)
T ss_pred             CccHH
Confidence            55443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=92.20  E-value=2.2  Score=27.84  Aligned_cols=33  Identities=18%  Similarity=0.139  Sum_probs=27.1

Q ss_pred             ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                      +|....+.+.+|..+...|++++|++.+-.++.
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~   50 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVR   50 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            566678899999999999999999998887765

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=92.04  E-value=0.13  Score=43.84  Aligned_cols=138  Identities=18%  Similarity=0.227  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhc--ccC--CCCchHHHHHHH----HHHHHHHHcCChHHHHHHHHHH
Q 016114          143 GMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDS--NYM--SLDDSIMENMRI----DLAELLHIVGRGQEGRELLEEC  213 (395)
Q Consensus       143 ~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~--~~~--~~~~~~~~~~~~----~la~~~~~~g~~~~A~~~~~~a  213 (395)
                      ..++-.+|..|... .+.-.|..++.++++.....  ...  .+..+....-+.    +....-.-.++.++   +--++
T Consensus       245 iealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~---~Rmqa  321 (615)
T KOG0508|consen  245 IEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPDE---MRMQA  321 (615)
T ss_pred             HHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHH---HHHHH
Confidence            44555566655433 35667888888888765431  001  111121111110    11111111222221   22356


Q ss_pred             HHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh
Q 016114          214 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH  283 (395)
Q Consensus       214 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  283 (395)
                      +-+.+++.|+.+++........|-+|..+|+++..++++.-|+++.++.+.+-+|.+...+...++++..
T Consensus       322 LiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~  391 (615)
T KOG0508|consen  322 LIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF  391 (615)
T ss_pred             HHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence            7777888999999987777778899999999999999999999999999999999999988888887654

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=91.88  E-value=2.8  Score=28.36  Aligned_cols=101  Identities=12%  Similarity=0.018  Sum_probs=58.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc----CCchhHHHHHHHHHHHHHHhccCCCC
Q 016114          277 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL----GEDDTKLLELLKRVLRIQEREFGSES  352 (395)
Q Consensus       277 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~  352 (395)
                      .+.-++..|++-+|+++.++.+....     ++......+..-|.++..+    .+++ -=..++.-+++-+.+... -.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~-----~~~~~~~lh~~QG~if~~lA~~ten~d-~k~~yLl~sve~~s~a~~-Ls   74 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHG-----EDESSWLLHRLQGTIFYKLAKKTENPD-VKFRYLLGSVECFSRAVE-LS   74 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHcc-----CCCchHHHHHHHhHHHHHHHHhccCch-HHHHHHHHhHHHHHHHhc-cC
Confidence            35678899999999999999887652     2222223444455555433    3444 334455555555554332 24


Q ss_pred             HHHHHHHHHHHHHHHHhcchhhhchhhHHHHH
Q 016114          353 EEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  384 (395)
Q Consensus       353 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  384 (395)
                      |..+..++.+|.-+....-|+++..-.++++.
T Consensus        75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            55566666666665555555555555555443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=91.82  E-value=9  Score=34.11  Aligned_cols=68  Identities=10%  Similarity=0.046  Sum_probs=50.9

Q ss_pred             CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHH
Q 016114           11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT   87 (395)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   87 (395)
                      +++|....+|+.|-.-+..+ -+++....|++.+..+        |....++...........+|+.-+.+|.+++.
T Consensus        14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F--------P~s~r~W~~yi~~El~skdfe~VEkLF~RCLv   81 (656)
T KOG1914|consen   14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF--------PSSPRAWKLYIERELASKDFESVEKLFSRCLV   81 (656)
T ss_pred             hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC--------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            45677778888888888777 8999999999887753        33334455556666778889999999988875

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=91.80  E-value=5  Score=34.32  Aligned_cols=107  Identities=14%  Similarity=0.003  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCC---h---h----HHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114          187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH---P---S----FVTHLLNLAASYSRSKNFVEAERLLRICL  256 (395)
Q Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~---~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~  256 (395)
                      ..+-..-|...+++++|..|..-|..+++++.+......   +   +    ...+-..|..||...++.+-|+....+++
T Consensus       176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI  255 (569)
T PF15015_consen  176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI  255 (569)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence            333345577788889999999999999988765421111   1   1    12234578899999999999999888877


Q ss_pred             HHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          257 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      .        -+|....-+...|.++..+.+|.+|...+--+.-++
T Consensus       256 ~--------lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymy  292 (569)
T PF15015_consen  256 N--------LNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY  292 (569)
T ss_pred             h--------cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6        356666677778889999999999887766555444

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.52  E-value=3.9  Score=29.39  Aligned_cols=87  Identities=20%  Similarity=0.177  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 016114           58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  137 (395)
Q Consensus        58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  137 (395)
                      ....+..+...-...++.+++...+...--+        .|.....-..-|.++...|++.+|+..++...+-       
T Consensus         9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-------   73 (153)
T TIGR02561         9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS-------   73 (153)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-------
Confidence            3444555555555688888888777654333        5666677777899999999999999999887542       


Q ss_pred             CChhHHHHHHHHHHHHHHCCCHH
Q 016114          138 NDGRVGMAMCSLAHAKCANGNAE  160 (395)
Q Consensus       138 ~~~~~~~~~~~la~~~~~~g~~~  160 (395)
                       .+........++.++..+|+.+
T Consensus        74 -~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        74 -AGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             -CCCchHHHHHHHHHHHhcCChH
Confidence             2222334445677777777753

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=91.37  E-value=6.2  Score=31.41  Aligned_cols=186  Identities=16%  Similarity=0.121  Sum_probs=101.5

Q ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHH-cCChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114           62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDG  140 (395)
Q Consensus        62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  140 (395)
                      +..++.+....|+|++...+.++++..       +......=.+.++.+|-. .|....+...+.......+   +..++
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~-------~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~---~~~~~   73 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEM-------NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE---NKGNE   73 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHT-------SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHcc-------CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc---ccchh
Confidence            456788999999999999999998876       122222223334444421 2223333333332222111   11112


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC-CchHHHHHHHHHHHHHHHc-----C-----ChHHHHHH
Q 016114          141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL-DDSIMENMRIDLAELLHIV-----G-----RGQEGREL  209 (395)
Q Consensus       141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~  209 (395)
                      ......    .-|. ..=-++=...+..++.+......+.. +.......+-..|..|...     |     -.++|...
T Consensus        74 ~~~~~i----~~yk-~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a  148 (236)
T PF00244_consen   74 KQVKLI----KDYK-KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA  148 (236)
T ss_dssp             HHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence            111111    1110 00012334455556665554311111 2222223333345554432     1     13689999


Q ss_pred             HHHHHHHHHhhhCCCChhHHHHHHHHHHHHH-hhhcHHHHHHHHHHHHHHHHHh
Q 016114          210 LEECLLITEKYKGKEHPSFVTHLLNLAASYS-RSKNFVEAERLLRICLDIMTKT  262 (395)
Q Consensus       210 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~  262 (395)
                      |++|+.+.....++.+|.......+.+..|. -.|+.++|..+.+++++-....
T Consensus       149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~  202 (236)
T PF00244_consen  149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE  202 (236)
T ss_dssp             HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred             hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence            9999999999888899988887778877764 5899999999999988755443

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.31  E-value=2.3  Score=26.40  Aligned_cols=43  Identities=28%  Similarity=0.250  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchH
Q 016114          143 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  185 (395)
Q Consensus       143 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  185 (395)
                      +..+...|.-+-..|++.+|+.+|+++++.+.+.....||.+.
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~   48 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence            3445566777888999999999999999988765334444443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PRK10941 hypothetical protein; Provisional

Probab=91.09  E-value=7  Score=31.80  Aligned_cols=76  Identities=12%  Similarity=0.043  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114           57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  136 (395)
                      -....+.++-.++...++++.|+.+.+..+.+        .|+.+.-+...|.+|.+.|.+..|..-++.-++.+     
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----  245 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----  245 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----
Confidence            45667788889999999999999999999987        34445556778999999999999999999888774     


Q ss_pred             CCChhHHHH
Q 016114          137 ENDGRVGMA  145 (395)
Q Consensus       137 ~~~~~~~~~  145 (395)
                      ++.|.....
T Consensus       246 P~dp~a~~i  254 (269)
T PRK10941        246 PEDPISEMI  254 (269)
T ss_pred             CCchhHHHH
Confidence            445554333

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=90.85  E-value=21  Score=36.52  Aligned_cols=156  Identities=15%  Similarity=0.071  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCC-------------------
Q 016114          142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR-------------------  202 (395)
Q Consensus       142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------  202 (395)
                      .++....+|..+...|++.+|+..|.+|+...+..    .|.-+.+.++-.++.+..-.+-                   
T Consensus       241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~----~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~  316 (1185)
T PF08626_consen  241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS----NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISS  316 (1185)
T ss_pred             hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc----CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCC
Confidence            45567789999999999999999999999998864    5665556555555443322110                   


Q ss_pred             -------------------------------------hHHHHHHHHHHHHHHHhhh---CCCChh--HHHHHHHHHHHHH
Q 016114          203 -------------------------------------GQEGRELLEECLLITEKYK---GKEHPS--FVTHLLNLAASYS  240 (395)
Q Consensus       203 -------------------------------------~~~A~~~~~~al~~~~~~~---~~~~~~--~~~~~~~la~~~~  240 (395)
                                                           .+.-...+++++..+.+..   .+..|.  ...+...++.++.
T Consensus       317 ~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~  396 (1185)
T PF08626_consen  317 STSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV  396 (1185)
T ss_pred             ccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Confidence                                                 1111224455555554442   111222  3455666777777


Q ss_pred             hhh--------------------cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114          241 RSK--------------------NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  300 (395)
Q Consensus       241 ~~~--------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  300 (395)
                      ...                    .-.++...+.+++......  -...+....+..+|.+|...|-..++.-+++.++..
T Consensus       397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~--l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~  474 (1185)
T PF08626_consen  397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD--LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ  474 (1185)
T ss_pred             HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh--CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            776                    6777888888887754332  123456778899999999999999988888888776


Q ss_pred             HHH
Q 016114          301 REI  303 (395)
Q Consensus       301 ~~~  303 (395)
                      ...
T Consensus       475 ~~~  477 (1185)
T PF08626_consen  475 LVP  477 (1185)
T ss_pred             hcc
Confidence            643

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=90.81  E-value=0.85  Score=39.09  Aligned_cols=73  Identities=16%  Similarity=0.183  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q 016114          190 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  262 (395)
Q Consensus       190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  262 (395)
                      ...|.+++...|+|..|++.++..---.........+-...+++.+|-+|+..++|.+|++.|...+-...+.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~  197 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT  197 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567889999999999999876431111112222234456778899999999999999999999998765544

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=90.56  E-value=27  Score=37.43  Aligned_cols=110  Identities=14%  Similarity=0.102  Sum_probs=75.3

Q ss_pred             CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114          267 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  346 (395)
Q Consensus       267 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  346 (395)
                      ......+|...|++....|+++.|...+-.|.+..          ...+....|..+...|+.. .|+..+++.++....
T Consensus      1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~-~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDEL-NALSVLQEILSKNFP 1734 (2382)
T ss_pred             cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHH-HHHHHHHHHHHhhcc
Confidence            45678899999999999999999998887776532          2346778899999999999 999999999966543


Q ss_pred             c-cCCC--CHH------HHHHHHHHHHHHHHhcchh--hhchhhHHHHHHHH
Q 016114          347 E-FGSE--SEE------VMLTLKKVVSYLDKLGRKE--EKFPLKKRLSNLRM  387 (395)
Q Consensus       347 ~-~~~~--~~~------~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~  387 (395)
                      - .++.  .|.      ...+...++......|+++  +-+.+|..+.++.+
T Consensus      1735 ~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1735 DLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred             cccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence            2 1110  111      1234445555566666632  23455666666655

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.32  E-value=9.5  Score=33.75  Aligned_cols=83  Identities=20%  Similarity=0.126  Sum_probs=51.5

Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  179 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  179 (395)
                      ....|..||.....+|+++-|+.+|+++-+                +..|..+|...|+-+.=.+..+.+...       
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------~~~L~lLy~~~g~~~~L~kl~~~a~~~-------  402 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKAKD----------------FSGLLLLYSSTGDREKLSKLAKIAEER-------  402 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------HHHHHHHHHHCT-HHHHHHHHHHHHHT-------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------ccccHHHHHHhCCHHHHHHHHHHHHHc-------
Confidence            445789999999999999999999998643                234566777788865444443333221       


Q ss_pred             CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016114          180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  213 (395)
Q Consensus       180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  213 (395)
                       .+.       +..-.++...|+.++.++.+.++
T Consensus       403 -~~~-------n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  403 -GDI-------NIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             -T-H-------HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             -cCH-------HHHHHHHHHcCCHHHHHHHHHHc
Confidence             110       11223455668888777777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.28  E-value=1.8  Score=23.64  Aligned_cols=25  Identities=32%  Similarity=0.363  Sum_probs=23.0

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114          147 CSLAHAKCANGNAEEAVELYKKALR  171 (395)
Q Consensus       147 ~~la~~~~~~g~~~~A~~~~~~a~~  171 (395)
                      ..+|..|...|+.+.|...+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5789999999999999999999885

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.19  E-value=9  Score=31.24  Aligned_cols=76  Identities=20%  Similarity=0.314  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114           57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  136 (395)
                      ....++..++..+...|+++.++..+++.+..        +|..-..+..+-..|...|+...|+..|.+.-.....-.|
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg  222 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG  222 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence            45678888999999999999999999988875        5666677888899999999999999999998886555444


Q ss_pred             CCCh
Q 016114          137 ENDG  140 (395)
Q Consensus       137 ~~~~  140 (395)
                      .++.
T Consensus       223 i~P~  226 (280)
T COG3629         223 IDPA  226 (280)
T ss_pred             CCcc
Confidence            4433

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=90.11  E-value=1.3  Score=35.91  Aligned_cols=60  Identities=18%  Similarity=0.307  Sum_probs=51.6

Q ss_pred             HHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           63 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        63 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      ...+.-....|+.++|..+|+.|+.+        .|....++..+|......++.-+|-.+|-+|+.+
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti  179 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI  179 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence            34455567889999999999999987        5677788999999999999999999999999876

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.01  E-value=1.7  Score=23.72  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=22.8

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114           21 LHMGSMYSTLENYEKSMLVYQRVIN   45 (395)
Q Consensus        21 ~~l~~~~~~~g~~~~A~~~~~~al~   45 (395)
                      +.++..|...|+.+.|...+++.+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5789999999999999999999885

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.83  E-value=16  Score=33.47  Aligned_cols=106  Identities=15%  Similarity=0.102  Sum_probs=78.1

Q ss_pred             hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016114          101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  180 (395)
Q Consensus       101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  180 (395)
                      ...+++-|.-.++..+|..+.++|...+.....-  ..+...+....+++.+|..+.+.+.|.+++++|-+.-       
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-------  424 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-------  424 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------
Confidence            3456677888889999999999999998765331  2234467788999999999999999999999998742       


Q ss_pred             CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114          181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  218 (395)
Q Consensus       181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  218 (395)
                      +..+.   ....+..+....|.-++|+...........
T Consensus       425 ~~~~l---~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  425 RQSPL---CQLLMLQSFLAEDKSEEALTCLQKIKSSED  459 (872)
T ss_pred             cccHH---HHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence            22222   223445566677888999988877666543

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=89.66  E-value=9.7  Score=30.88  Aligned_cols=131  Identities=16%  Similarity=0.064  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHc
Q 016114           35 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE  114 (395)
Q Consensus        35 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~  114 (395)
                      +-+.-+.+.++-.+...  ......+++.++|..|.+.++.+.+.+...+.++-.-...  -..+..-+...+|.+|..+
T Consensus        93 eki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~y~d~  168 (412)
T COG5187          93 EKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLIYGDR  168 (412)
T ss_pred             HHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHhhccH
Confidence            33444544444443322  2346788999999999999999999999998877544322  2334445566677777655


Q ss_pred             CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114          115 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  174 (395)
Q Consensus       115 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  174 (395)
                      .-.++.++.....+   ++  |.+....-..-...|.......++.+|-..+...+..+.
T Consensus       169 ~vV~e~lE~~~~~i---Ek--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~  223 (412)
T COG5187         169 KVVEESLEVADDII---EK--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE  223 (412)
T ss_pred             HHHHHHHHHHHHHH---Hh--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence            44444444433333   33  233222222233345556667788888888877776543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=89.66  E-value=0.47  Score=38.28  Aligned_cols=65  Identities=9%  Similarity=0.058  Sum_probs=50.9

Q ss_pred             HHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhh
Q 016114          319 LVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  392 (395)
Q Consensus       319 l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  392 (395)
                      .+.-..+.|+.+ +|..+|+.|+.+     .+.+   ..++..+|......++.-+|-.+|-+|+.+.+.+.+.
T Consensus       122 ~A~~~~~~Gk~e-kA~~lfeHAlal-----aP~~---p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA  186 (472)
T KOG3824|consen  122 AAGRSRKDGKLE-KAMTLFEHALAL-----APTN---PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA  186 (472)
T ss_pred             HHHHHHhccchH-HHHHHHHHHHhc-----CCCC---HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence            344456678888 999999999986     3444   4667888998888899999999999999887766554

>PF12854 PPR_1: PPR repeat

Probab=89.62  E-value=0.93  Score=23.02  Aligned_cols=26  Identities=23%  Similarity=0.226  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016114          229 VTHLLNLAASYSRSKNFVEAERLLRI  254 (395)
Q Consensus       229 ~~~~~~la~~~~~~~~~~~A~~~~~~  254 (395)
                      ..+++.+...+.+.|+.++|.+++++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            45788899999999999999999875

>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.38  E-value=2.1  Score=35.56  Aligned_cols=65  Identities=14%  Similarity=0.158  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHH
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE   80 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~   80 (395)
                      ...-+...|+-.+.++++++|...|..|..++...+|..+.....+++..|..++..++.....-
T Consensus        40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL  104 (400)
T KOG4563|consen   40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL  104 (400)
T ss_pred             HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34456789999999999999999999999999999999999999999999999999888776653

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=89.30  E-value=14  Score=32.21  Aligned_cols=71  Identities=17%  Similarity=0.050  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChH----------HHHHHHHHHHHHHHhhCchhHHHHHHHHH
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI----------LLVTSLLGMAKVLGSIGRAKKAVEIYHRV   85 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   85 (395)
                      .+....-.|...+..+.+.+|++.+..--......   .++          .....-...+.++...|++.++...+++.
T Consensus        78 s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~---~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i  154 (549)
T PF07079_consen   78 SAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGT---ESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI  154 (549)
T ss_pred             chHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhccc---ccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            33444556778889999999998776544332111   111          11112234578889999999999999987


Q ss_pred             HHHH
Q 016114           86 ITIL   89 (395)
Q Consensus        86 l~~~   89 (395)
                      ....
T Consensus       155 ~~~l  158 (549)
T PF07079_consen  155 IERL  158 (549)
T ss_pred             HHHH
Confidence            7654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=89.17  E-value=6.1  Score=27.88  Aligned_cols=67  Identities=19%  Similarity=0.135  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHhhCCCCc-chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          228 FVTHLLNLAASYSRSKN---FVEAERLLRICLDIMTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       228 ~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      ...+.++++.++....+   ..+.+.+++..+.       ..+| ....+.+.|+..+.+.++|+.++.+.+..++..
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-------~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e  101 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-------SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE  101 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-------hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            44567788888876654   4556666665543       2233 445677889999999999999999998887753

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=88.99  E-value=12  Score=30.98  Aligned_cols=131  Identities=12%  Similarity=0.072  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHC
Q 016114           77 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN  156 (395)
Q Consensus        77 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  156 (395)
                      +-++-+.+.++-.++..|  ......++.+.|..|.+.|+-+.|.+.+.+..+-.-..  ....++......+|..|...
T Consensus        82 eki~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D~  157 (393)
T KOG0687|consen   82 EKIKELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLDH  157 (393)
T ss_pred             HHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhccH
Confidence            334445555555544332  34667889999999999999999999998876643332  12334555566677776554


Q ss_pred             CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114          157 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  218 (395)
Q Consensus       157 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  218 (395)
                      .-..   +..+++-.+.++    +.|.....+.-..-|.......++.+|-.+|-.++..+.
T Consensus       158 ~lV~---~~iekak~liE~----GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt  212 (393)
T KOG0687|consen  158 DLVT---ESIEKAKSLIEE----GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT  212 (393)
T ss_pred             HHHH---HHHHHHHHHHHh----CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence            3333   333444444432    444444444445567777778889999998888776543

>PF12854 PPR_1: PPR repeat

Probab=88.91  E-value=1.4  Score=22.31  Aligned_cols=27  Identities=26%  Similarity=0.503  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016114          143 GMAMCSLAHAKCANGNAEEAVELYKKA  169 (395)
Q Consensus       143 ~~~~~~la~~~~~~g~~~~A~~~~~~a  169 (395)
                      ..+++.+-..|.+.|+.++|.+++++.
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            357888999999999999999998763

>PF13041 PPR_2: PPR repeat family

Probab=88.90  E-value=2.7  Score=23.51  Aligned_cols=28  Identities=21%  Similarity=0.332  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          230 THLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       230 ~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                      .+++.+-..+.+.|++++|.++|++..+
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKK   31 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4678888999999999999999998876

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=88.87  E-value=8.3  Score=31.33  Aligned_cols=73  Identities=15%  Similarity=0.167  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114           60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  139 (395)
Q Consensus        60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  139 (395)
                      ..+...+..|...|.+.+|+.+.++++.+        +|..-..+..+-.++...|+--.+.+.|++.-+..+..+|-+.
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v  351 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV  351 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence            34455677888999999999999999886        5666677778888899999999999999988877776665443


Q ss_pred             h
Q 016114          140 G  140 (395)
Q Consensus       140 ~  140 (395)
                      .
T Consensus       352 d  352 (361)
T COG3947         352 D  352 (361)
T ss_pred             c
Confidence            3

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.69  E-value=17  Score=32.29  Aligned_cols=100  Identities=19%  Similarity=0.101  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCC
Q 016114          146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH  225 (395)
Q Consensus       146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  225 (395)
                      ...++..+...|.++.|+.+.+.-              ..    .+.   +....|+++.|.+..++             
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D~--------------~~----rFe---LAl~lg~L~~A~~~a~~-------------  343 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTDP--------------DH----RFE---LALQLGNLDIALEIAKE-------------  343 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS-H--------------HH----HHH---HHHHCT-HHHHHHHCCC-------------
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCCh--------------HH----HhH---HHHhcCCHHHHHHHHHh-------------
Confidence            455667777888887777654321              11    122   33467887777665432             


Q ss_pred             hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHH
Q 016114          226 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  295 (395)
Q Consensus       226 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  295 (395)
                      ......|..||...+.+|+++-|+++|+++-+                +..|..+|...|+.+.=.++.+
T Consensus       344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------~~~L~lLy~~~g~~~~L~kl~~  397 (443)
T PF04053_consen  344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKD----------------FSGLLLLYSSTGDREKLSKLAK  397 (443)
T ss_dssp             CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------ccccHHHHHHhCCHHHHHHHHH
Confidence            11234688889999999999999888887543                2455667777777654444333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=87.88  E-value=11  Score=30.78  Aligned_cols=73  Identities=22%  Similarity=0.082  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 016114          231 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL  310 (395)
Q Consensus       231 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  310 (395)
                      .+...+..|...|.+.+|+++.++++..        +|-....+..+-.++...|+--.+.+.|++.-+..+.-+|-+..
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd  352 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD  352 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence            3445577889999999999999999873        56666677888889999999999999999988877776665544


Q ss_pred             H
Q 016114          311 P  311 (395)
Q Consensus       311 ~  311 (395)
                      +
T Consensus       353 d  353 (361)
T COG3947         353 D  353 (361)
T ss_pred             h
Confidence            3

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.78  E-value=17  Score=31.42  Aligned_cols=147  Identities=13%  Similarity=-0.019  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhC---CCCcchHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHH
Q 016114          231 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG---PDDQSISFPMLHLGITLYHLNR---DKEAEKLVLEALYIREIA  304 (395)
Q Consensus       231 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~  304 (395)
                      .+...|...+....|++|+.++-.|-+.+.....   ..-...+..-..+.+||+...+   ...|..-+..+-+-+...
T Consensus       165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s  244 (568)
T KOG2561|consen  165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS  244 (568)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence            3455677777888888888877766554432210   0001112222344566776654   345555555544444333


Q ss_pred             c-----------CCCChHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH------
Q 016114          305 F-----------GKDSLPVGE---ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS------  364 (395)
Q Consensus       305 ~-----------~~~~~~~~~---~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~------  364 (395)
                      +           |+..|+.+-   ....-|.+.+++|+.+ +|.++++.+...+.+..-++.  ....+..+|.      
T Consensus       245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~d-eAye~le~a~~~l~elki~d~--~lsllv~mGfeesdaR  321 (568)
T KOG2561|consen  245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRD-EAYEALESAHAKLLELKINDE--TLSLLVGMGFEESDAR  321 (568)
T ss_pred             hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHeeccch--HHHHHHHcCCCchHHH
Confidence            3           444555432   3334588899999999 999999999887766433221  2222222221      


Q ss_pred             --HHHHhcchhhhchhhH
Q 016114          365 --YLDKLGRKEEKFPLKK  380 (395)
Q Consensus       365 --~~~~~g~~~~A~~~~~  380 (395)
                        +-...|+.+.|..++.
T Consensus       322 laLRsc~g~Vd~AvqfI~  339 (568)
T KOG2561|consen  322 LALRSCNGDVDSAVQFII  339 (568)
T ss_pred             HHHHhccccHHHHHHHHH
Confidence              1223467777777654

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=87.50  E-value=10  Score=28.44  Aligned_cols=133  Identities=14%  Similarity=0.110  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHH-----hhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHc-----C--ChHHHHHHH
Q 016114           57 LLVTSLLGMAKVLG-----SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE-----G--KAVDAESVF  124 (395)
Q Consensus        57 ~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~A~~~~  124 (395)
                      ....+.+.+|..+.     ..++...|++.+..+-+.          ..+.+...+|.++..-     +  +..+|++++
T Consensus        66 ~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~  135 (248)
T KOG4014|consen   66 SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYM  135 (248)
T ss_pred             CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHH
Confidence            34455666665554     235678888888776542          2334555666655432     2  256777887


Q ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHH------------------------HCCCHHHHHHHHHHHHHHHHhcccCC
Q 016114          125 SRILKIYTKVYGENDGRVGMAMCSLAHAKC------------------------ANGNAEEAVELYKKALRVIKDSNYMS  180 (395)
Q Consensus       125 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~------------------------~~g~~~~A~~~~~~a~~~~~~~~~~~  180 (395)
                      .++.++          ....+.++|+..|.                        ...+.+.|..+.-+|-++        
T Consensus       136 traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel--------  197 (248)
T KOG4014|consen  136 TRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL--------  197 (248)
T ss_pred             HHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--------
Confidence            777653          11223344444433                        335566666666666553        


Q ss_pred             CCchHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHhhh
Q 016114          181 LDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYK  221 (395)
Q Consensus       181 ~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~  221 (395)
                       +.+   .+..|+.+.|-.-    .+.++|..+-.+|.++.+...
T Consensus       198 -~~~---~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~  238 (248)
T KOG4014|consen  198 -DIP---QACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELR  238 (248)
T ss_pred             -CCh---HHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence             222   2234566655432    256788888888888876654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=87.38  E-value=1.4  Score=34.05  Aligned_cols=55  Identities=24%  Similarity=0.471  Sum_probs=48.9

Q ss_pred             HHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           68 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        68 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      .....|+.+.|.+.|.+++.+        .|.....+..+|....+.|+++.|...|++.+++
T Consensus         4 ~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l   58 (287)
T COG4976           4 MLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL   58 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence            445678999999999999987        5777888999999999999999999999999987

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=86.97  E-value=23  Score=32.03  Aligned_cols=177  Identities=11%  Similarity=-0.031  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC
Q 016114          187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  266 (395)
Q Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  266 (395)
                      ...+......-...|+++...-.+++++--+.        .....|...+......|+.+-|...+..+.++.       
T Consensus       297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-------  361 (577)
T KOG1258|consen  297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCA--------LYDEFWIKYARWMESSGDVSLANNVLARACKIH-------  361 (577)
T ss_pred             HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-------
Confidence            34455666667788999999999998876432        234567777777788899999988888887753       


Q ss_pred             CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114          267 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  346 (395)
Q Consensus       267 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  346 (395)
                      .+....+...-+......|++..|...++...+-.        |....+-..-.......|+.+ .+.. +........ 
T Consensus       362 ~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~-~~~~-~~~l~s~~~-  430 (577)
T KOG1258|consen  362 VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLE-DANY-KNELYSSIY-  430 (577)
T ss_pred             CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchh-hhhH-HHHHHHHhc-
Confidence            34444455556777788999999999998876633        333333333444555667666 5553 222222211 


Q ss_pred             ccCCCCHHH-HHHHHHHHHH-HHHhcchhhhchhhHHHHHHHHHHH
Q 016114          347 EFGSESEEV-MLTLKKVVSY-LDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       347 ~~~~~~~~~-~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                       .+..++.. ...+...++. +.-.++.+.|...+.+++++.+..+
T Consensus       431 -~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k  475 (577)
T KOG1258|consen  431 -EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCK  475 (577)
T ss_pred             -ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccH
Confidence             12333322 2334444544 4446788888888888887765543

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.83  E-value=20  Score=31.09  Aligned_cols=116  Identities=12%  Similarity=-0.010  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC---cChHHHHHHHHHHHHHHHhhCc---hhHHHHHHHHHHHHHHHh
Q 016114           19 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---KTSILLVTSLLGMAKVLGSIGR---AKKAVEIYHRVITILELN   92 (395)
Q Consensus        19 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~   92 (395)
                      .++..|...+....|++|+.++-.|-+.+.....   .....++..-..+-+||+...+   .++|..-+..+-.-+...
T Consensus       165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s  244 (568)
T KOG2561|consen  165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS  244 (568)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence            3566777888889999999888777665433200   0011223333445577776654   456666655555544443


Q ss_pred             c-----------CCCChhhh---hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114           93 R-----------GTESADLV---LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  134 (395)
Q Consensus        93 ~-----------~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  134 (395)
                      .           |+..|..+   ..+..-|.+.+++|+-++|.++++.+...+...
T Consensus       245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el  300 (568)
T KOG2561|consen  245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL  300 (568)
T ss_pred             hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence            3           34445443   345566999999999999999999998776654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.81  E-value=29  Score=32.96  Aligned_cols=50  Identities=22%  Similarity=0.287  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114          165 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  217 (395)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  217 (395)
                      .|.-|+.+.+.   .+.+...+..++...|..++..|++++|...|-+++...
T Consensus       349 ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l  398 (933)
T KOG2114|consen  349 LYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL  398 (933)
T ss_pred             hHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence            34445555554   355667778888899999999999999999999987653

>PF13041 PPR_2: PPR repeat family

Probab=86.62  E-value=3.7  Score=22.93  Aligned_cols=28  Identities=21%  Similarity=-0.008  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114          272 FPMLHLGITLYHLNRDKEAEKLVLEALY  299 (395)
Q Consensus       272 ~~~~~la~~~~~~g~~~~A~~~~~~al~  299 (395)
                      .++..+-..+.+.|++++|.++|++..+
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKK   31 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4677888899999999999999998875

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.62  E-value=3.6  Score=25.93  Aligned_cols=59  Identities=12%  Similarity=0.041  Sum_probs=34.7

Q ss_pred             HHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114          317 DCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  387 (395)
Q Consensus       317 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  387 (395)
                      ...|..+...|+.+ .|+.+|++++....+.+.-..+           .......+++|..+-++......
T Consensus        12 I~kaL~~dE~g~~e-~Al~~Y~~gi~~l~eg~ai~~~-----------~~~~~~~w~~ar~~~~Km~~~~~   70 (79)
T cd02679          12 ISKALRADEWGDKE-QALAHYRKGLRELEEGIAVPVP-----------SAGVGSQWERARRLQQKMKTNLN   70 (79)
T ss_pred             HHHHhhhhhcCCHH-HHHHHHHHHHHHHHHHcCCCCC-----------cccccHHHHHHHHHHHHHHHHHH
Confidence            34444455568888 8999999999888775543332           11222345555555555544433

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=86.41  E-value=3.2  Score=34.62  Aligned_cols=67  Identities=13%  Similarity=0.090  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHH
Q 016114           58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF  124 (395)
Q Consensus        58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  124 (395)
                      .+.-+...|+-.+.++++++|...|..|..+....+|..+.....+++..|..++..+++...+-.+
T Consensus        40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n  106 (400)
T KOG4563|consen   40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN  106 (400)
T ss_pred             HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4555777899999999999999999999999999999899999999999999999998887765544

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=86.41  E-value=53  Score=35.56  Aligned_cols=111  Identities=12%  Similarity=0.028  Sum_probs=77.9

Q ss_pred             ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 016114          225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  304 (395)
Q Consensus       225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  304 (395)
                      ......+|.+.|++....|+++.|...+-+|.+.          ....+....|..++.+|+...|+..+++.++....-
T Consensus      1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKES----------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred             cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence            4567889999999999999999999988887662          244577889999999999999999999999765332


Q ss_pred             cCCC---Ch------HHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHHHH
Q 016114          305 FGKD---SL------PVGEALDCLVSIQTRLGEDDT-KLLELLKRVLRIQE  345 (395)
Q Consensus       305 ~~~~---~~------~~~~~~~~l~~~~~~~~~~~~-~A~~~~~~al~~~~  345 (395)
                      ....   .|      ....+...++......++.+. .-+.+|+.+.++..
T Consensus      1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred             ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence            1111   01      112234455556666666542 33566777776654

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=86.16  E-value=1.7  Score=21.01  Aligned_cols=27  Identities=30%  Similarity=0.460  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114          145 AMCSLAHAKCANGNAEEAVELYKKALR  171 (395)
Q Consensus       145 ~~~~la~~~~~~g~~~~A~~~~~~a~~  171 (395)
                      +++.+-..|.+.|++++|.+.+++..+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence            467788899999999999999998764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=85.88  E-value=2.6  Score=33.05  Aligned_cols=108  Identities=16%  Similarity=0.023  Sum_probs=64.3

Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHHcCCCC---h-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHH
Q 016114          279 ITLYHLNRDKEAEKLVLEALYIREIAFGKDS---L-PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE  354 (395)
Q Consensus       279 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  354 (395)
                      ...+..|+++.|+++..-+++.-..++....   | .+++....-+......|+.- +. .+......+. ....-...-
T Consensus        91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~-e~-~~~~~~~~l~-~~~dmpd~v  167 (230)
T PHA02537         91 VWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESV-EP-YFLRVFLDLT-TEWDMPDEV  167 (230)
T ss_pred             eeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCC-Ch-HHHHHHHHHH-hcCCCChHH
Confidence            3567899999999999999886544322111   1 12233333445555666543 11 1233333332 222333344


Q ss_pred             HHHHHHHHHHHHH---------HhcchhhhchhhHHHHHHHHHH
Q 016114          355 VMLTLKKVVSYLD---------KLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       355 ~~~~~~~la~~~~---------~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      .+..+..+|..+.         ..++...|..++++|+.+.++.
T Consensus       168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~  211 (230)
T PHA02537        168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC  211 (230)
T ss_pred             HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence            5566777777773         4567889999999999987664

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=85.74  E-value=2  Score=33.28  Aligned_cols=55  Identities=13%  Similarity=0.240  Sum_probs=48.1

Q ss_pred             HHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114           26 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   88 (395)
Q Consensus        26 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   88 (395)
                      .....++.+.|.+.|.+++.+.        |.....|+.+|....+.|+++.|...|++.+++
T Consensus         4 ~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l   58 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL   58 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence            4457789999999999999874        566778999999999999999999999999987

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=85.49  E-value=1.3  Score=22.95  Aligned_cols=30  Identities=17%  Similarity=0.122  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHhcchhhhchhhH--HHHHHH
Q 016114          357 LTLKKVVSYLDKLGRKEEKFPLKK--RLSNLR  386 (395)
Q Consensus       357 ~~~~~la~~~~~~g~~~~A~~~~~--~a~~~~  386 (395)
                      +.+..+|-.+..+|++++|+..|.  -+..+.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld   33 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALD   33 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            346778999999999999999944  655443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=85.13  E-value=25  Score=30.57  Aligned_cols=65  Identities=6%  Similarity=-0.032  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHH--HHHhhCchhHHHHHHHHHHHH
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK--VLGSIGRAKKAVEIYHRVITI   88 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~al~~   88 (395)
                      ......+...+..++|..|...+......   . .+.. . ...+..++.  .++...++.+|.+.++..+..
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l-~~~~-~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRR---L-PGRE-E-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---C-Cchh-h-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            44566777888999999999999988763   1 1211 2 344555544  456678889999999887654

>PRK09169 hypothetical protein; Validated

Probab=83.69  E-value=70  Score=34.69  Aligned_cols=16  Identities=13%  Similarity=0.088  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHh
Q 016114          354 EVMLTLKKVVSYLDKL  369 (395)
Q Consensus       354 ~~~~~~~~la~~~~~~  369 (395)
                      ....+.+.++++....
T Consensus       794 ~laq~aNa~aR~~~~~  809 (2316)
T PRK09169        794 GLAQLANAMARLILKL  809 (2316)
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            3344455555555433

>PRK09169 hypothetical protein; Validated

Probab=83.23  E-value=74  Score=34.56  Aligned_cols=27  Identities=11%  Similarity=0.100  Sum_probs=12.0

Q ss_pred             HHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114          362 VVSYLDKLGRKEEKFPLKKRLSNLRMK  388 (395)
Q Consensus       362 la~~~~~~g~~~~A~~~~~~a~~~~~~  388 (395)
                      ++..+....+|.+.-.+-+-++.+...
T Consensus       753 lAnsLNaLsKwp~~~~c~~a~~~La~~  779 (2316)
T PRK09169        753 LANSLNALSKWPQEPACQQAALLLAER  779 (2316)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            344444444444444444444444443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=82.99  E-value=3.8  Score=20.27  Aligned_cols=27  Identities=37%  Similarity=0.644  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114          145 AMCSLAHAKCANGNAEEAVELYKKALR  171 (395)
Q Consensus       145 ~~~~la~~~~~~g~~~~A~~~~~~a~~  171 (395)
                      +++.+-..|.+.|++++|...|.+..+
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~   28 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLE   28 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            356677889999999999999998765

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=82.79  E-value=27  Score=29.22  Aligned_cols=94  Identities=16%  Similarity=0.256  Sum_probs=65.9

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHH
Q 016114          152 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  231 (395)
Q Consensus       152 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  231 (395)
                      +....++.++|++++++..+..+..    ..+..+..+...+|.++...|+..++.+.+...-+......+- .+.....
T Consensus        84 ~~~~~~D~~~al~~Le~i~~~~~~~----~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v-~~~Vh~~  158 (380)
T KOG2908|consen   84 VSEQISDKDEALEFLEKIIEKLKEY----KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV-TSNVHSS  158 (380)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC-Chhhhhh
Confidence            3455669999999999999887653    2334556677889999999999999999999887776655432 2324444


Q ss_pred             HHHHHH-HHHhhhcHHHHHH
Q 016114          232 LLNLAA-SYSRSKNFVEAER  250 (395)
Q Consensus       232 ~~~la~-~~~~~~~~~~A~~  250 (395)
                      ++.++. .|...|++.....
T Consensus       159 fY~lssqYyk~~~d~a~yYr  178 (380)
T KOG2908|consen  159 FYSLSSQYYKKIGDFASYYR  178 (380)
T ss_pred             HHHHHHHHHHHHHhHHHHHH
Confidence            555554 4555677765443

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=82.24  E-value=25  Score=28.54  Aligned_cols=138  Identities=16%  Similarity=0.103  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcC-----hHHHHHHHHHHH-HHHHhhCchhHHHHHHHHHHHHH
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-----SILLVTSLLGMA-KVLGSIGRAKKAVEIYHRVITIL   89 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~   89 (395)
                      ....+-.-+....-..||..|+..++++++........+     ..+.--.+..+| .++..++++.+.+.+.-+-...-
T Consensus        34 a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~p  113 (309)
T PF07163_consen   34 AVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVP  113 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCc
Confidence            345566778888888999999999999998873321111     112233344444 46778899999988776654432


Q ss_pred             HHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH-----HHHHHHCCCHHHHHH
Q 016114           90 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL-----AHAKCANGNAEEAVE  164 (395)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-----a~~~~~~g~~~~A~~  164 (395)
                      ++.    +   +.++-.-...|.+.+++....+.-..-+..      +++..... |..+     -.++.=.|.+++|.+
T Consensus       114 Ekl----P---pkIleLCILLysKv~Ep~amlev~~~WL~~------p~Nq~lp~-y~~vaELyLl~VLlPLG~~~eAee  179 (309)
T PF07163_consen  114 EKL----P---PKILELCILLYSKVQEPAAMLEVASAWLQD------PSNQSLPE-YGTVAELYLLHVLLPLGHFSEAEE  179 (309)
T ss_pred             ccC----C---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhC------cccCCchh-hHHHHHHHHHHHHhccccHHHHHH
Confidence            221    2   233444456788889888777766555542      22222211 3334     445556899999998


Q ss_pred             HHH
Q 016114          165 LYK  167 (395)
Q Consensus       165 ~~~  167 (395)
                      +..
T Consensus       180 lv~  182 (309)
T PF07163_consen  180 LVV  182 (309)
T ss_pred             HHh
Confidence            873

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=81.96  E-value=12  Score=33.19  Aligned_cols=100  Identities=15%  Similarity=0.037  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh---CchhHHHHHHHHHHHHHH
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---GRAKKAVEIYHRVITILE   90 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~   90 (395)
                      |...+....-|.-.+..+....|+..|.+++..        .|.....+.+.+.++...   |+.-.|+.-...++++  
T Consensus       371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--  440 (758)
T KOG1310|consen  371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--  440 (758)
T ss_pred             hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--
Confidence            344454555566566667788888888888764        244556666777777665   3444555555555544  


Q ss_pred             HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHH
Q 016114           91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK  129 (395)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  129 (395)
                            +|....+++.|+.++...+++.+|+.....+..
T Consensus       441 ------n~s~~kah~~la~aL~el~r~~eal~~~~alq~  473 (758)
T KOG1310|consen  441 ------NPSIQKAHFRLARALNELTRYLEALSCHWALQM  473 (758)
T ss_pred             ------ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence                  677888999999999999999999988765543

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.90  E-value=10  Score=23.82  Aligned_cols=31  Identities=16%  Similarity=0.229  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114          146 MCSLAHAKCANGNAEEAVELYKKALRVIKDS  176 (395)
Q Consensus       146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  176 (395)
                      +...|.-.-..|++++|+.+|.++++.+...
T Consensus         9 l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~   39 (77)
T cd02683           9 VLKRAVELDQEGRFQEALVCYQEGIDLLMQV   39 (77)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            3444556678899999999999999987654

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=80.99  E-value=28  Score=28.28  Aligned_cols=219  Identities=13%  Similarity=0.040  Sum_probs=115.2

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchh-HHHHHHHHHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK-KAVEIYHRVITILE   90 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~   90 (395)
                      ...+..+.++.=+..+.+.|++..|.++..-.++...+...+.+   ......++.+....+.-+ +-.++..+++... 
T Consensus         5 ky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~---~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-   80 (260)
T PF04190_consen    5 KYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVD---EESIARLIELISLFPPEEPERKKFIKAAIKWS-   80 (260)
T ss_dssp             -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---S---HHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-
Confidence            44566777888888999999999999988888888766422222   223345566665554332 4566777777776 


Q ss_pred             HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHH--------HHHHHhCCCChh-HHHHHHHHHHHHHHCCCHHH
Q 016114           91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK--------IYTKVYGENDGR-VGMAMCSLAHAKCANGNAEE  161 (395)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~  161 (395)
                      + .+......+..+..+|..+.+.|++.+|..+|-.+-.        +.........+. ...........|...++...
T Consensus        81 ~-~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~  159 (260)
T PF04190_consen   81 K-FGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRD  159 (260)
T ss_dssp             H-TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHH
T ss_pred             c-cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHH
Confidence            2 2334445677888999999999999999988843211        111111111122 22222233345677899999


Q ss_pred             HHHHHHHHHHHHHhc--------ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHH
Q 016114          162 AVELYKKALRVIKDS--------NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL  233 (395)
Q Consensus       162 A~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  233 (395)
                      |...+..-.+.....        ....+..|.+..++. +-.+ ...+    +...|....+.+..... .+|.....+.
T Consensus       160 A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l-Ll~t-~e~~----~~~~F~~L~~~Y~~~L~-rd~~~~~~L~  232 (260)
T PF04190_consen  160 ANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL-LLLT-CERD----NLPLFKKLCEKYKPSLK-RDPSFKEYLD  232 (260)
T ss_dssp             HHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH-HHHH-HHHT-----HHHHHHHHHHTHH----HHHHTHHHHH
T ss_pred             HHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH-HHHH-HhcC----cHHHHHHHHHHhCcccc-ccHHHHHHHH
Confidence            988887766653221        011223343332222 2222 2223    23455555444433321 1344555666


Q ss_pred             HHHHHHHhh
Q 016114          234 NLAASYSRS  242 (395)
Q Consensus       234 ~la~~~~~~  242 (395)
                      .+|..|...
T Consensus       233 ~IG~~yFgi  241 (260)
T PF04190_consen  233 KIGQLYFGI  241 (260)
T ss_dssp             HHHHHHH--
T ss_pred             HHHHHHCCC
Confidence            677776654

; PDB: 3LKU_E 2WPV_G.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.49  E-value=18  Score=32.85  Aligned_cols=50  Identities=18%  Similarity=0.165  Sum_probs=35.2

Q ss_pred             HHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114           69 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  131 (395)
Q Consensus        69 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  131 (395)
                      ..+.|+++.|..+..++-.             ..-+..||......|++..|.+++.++....
T Consensus       647 al~lgrl~iA~~la~e~~s-------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~  696 (794)
T KOG0276|consen  647 ALKLGRLDIAFDLAVEANS-------------EVKWRQLGDAALSAGELPLASECFLRARDLG  696 (794)
T ss_pred             hhhcCcHHHHHHHHHhhcc-------------hHHHHHHHHHHhhcccchhHHHHHHhhcchh
Confidence            3456777777665544322             2346678999999999999999999887653

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=80.29  E-value=39  Score=29.39  Aligned_cols=139  Identities=15%  Similarity=-0.009  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHH--HHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114          145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE--LLHIVGRGQEGRELLEECLLITEKYKG  222 (395)
Q Consensus       145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~  222 (395)
                      .....+.-.+..++|..|...+.......      ++...  ...+..++.  .++...++++|.+.++..+......  
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl------~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l--  202 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRL------PGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL--  202 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhC------Cchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh--
Confidence            44556777889999999999999987641      12222  233445544  4455668889999998876542110  


Q ss_pred             CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114          223 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  302 (395)
Q Consensus       223 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  302 (395)
                         ......+..+..+       -++...+...............+.....+..-|.--...|+|+.|...+-+++++..
T Consensus       203 ---~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~  272 (379)
T PF09670_consen  203 ---NQEREGLKELVEV-------LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLA  272 (379)
T ss_pred             ---HhHHHHHHHHHHH-------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence               0011111111111       122222222111111100000111222233334334468999999999989988765


Q ss_pred             H
Q 016114          303 I  303 (395)
Q Consensus       303 ~  303 (395)
                      +
T Consensus       273 Q  273 (379)
T PF09670_consen  273 Q  273 (379)
T ss_pred             H
Confidence            4

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	395
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		3e-09
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		2e-07
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		3e-07
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		4e-05

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 6/142 (4%)
Query: 216 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 275
           I EK  GK+HP+    L NLA  Y +   + EAE L +  L+I  K +G D   ++  + 
Sbjct: 98  IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157
Query: 276 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI---QTRLGEDDTK 332
           +L +   +  + +E E     AL I +   G D   V +  + L S    Q +  + +T 
Sbjct: 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETL 217
Query: 333 LLELLKRVLRIQEREFGSESEE 354
             E+L R     EREFGS  +E
Sbjct: 218 YKEILTRA---HEREFGSVDDE 236

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 1/165 (0%)
Query: 218 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 277
           EK  G +HP   T L  LA  Y     + EA  LL   L I  KT+G D  +++  + +L
Sbjct: 32  EKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91
Query: 278 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 337
            +      + KEAE L   AL IRE   GK    V + L+ L  +    G+ + ++    
Sbjct: 92  AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE-EVEYYY 150
Query: 338 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 382
           +R L I     G +   V  T   + S   K G+ ++   L K +
Sbjct: 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 1/165 (0%)
Query: 218 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 277
           EK  G +HP   T L  LA  Y     + EA  LL   L I  KT+G D  +++  + +L
Sbjct: 32  EKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91
Query: 278 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 337
            +      + KEAE L   AL IRE   GK    V + L  L  +    G+ + ++    
Sbjct: 92  AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAE-EVEYYY 150
Query: 338 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 382
           +R L I     G +   V  T   + S   K G+ ++   L K +
Sbjct: 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 26/154 (16%)
Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
             ++G+ Y    +Y++++  YQ+ +  L+ R          +   +       G   +A+
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALE-LDPR-------SAEAWYNLGNAYYKQGDYDEAI 55
Query: 80  EIYHRVITILELN-RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138
           E Y +    LEL+ R  E+       ++LG+ + K+G   +A   + + L++        
Sbjct: 56  EYYQKA---LELDPRSAEA------WYNLGNAYYKQGDYDEAIEYYQKALEL-------- 98
Query: 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172
           D R   A  +L +A    G+ +EA+E Y+KAL +
Sbjct: 99  DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	395
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-34
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-29
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-28
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-11
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-33
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-33
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	6e-27
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-22
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-17
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-19
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-19
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-17
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-17
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-16
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	7e-15
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	4e-15
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	2e-13
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-15
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	6e-12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	6e-12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	6e-09
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-14
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-14
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-09
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	9e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	7e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	5e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	8e-09
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	9e-06
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	9e-06
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	3e-04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	1e-08
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	1e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-04
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	2e-07
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	2e-06
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	8e-05
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	2e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	4e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	7e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	7e-04

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  127 bits (321), Expect = 4e-34
 Identities = 59/290 (20%), Positives = 100/290 (34%), Gaps = 17/290 (5%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
             H     S L     ++ + ++ +  LE   G     + T L  +A V     + K+A 
Sbjct: 4   SHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAA 63

Query: 80  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 139
            + +  + I E   G +   +   L +L  L+ K GK  +AE +  R L+I  KV G+  
Sbjct: 64  HLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123

Query: 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD------SIMENMRIDL 193
             V   + +LA      G AEE    Y++AL +        L            N    L
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT----RLGPDDPNVAKTKNN----L 175

Query: 194 AELLHIVGRGQEGRELLEECL-LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 252
           A      G+ Q+   L +E L    EK  G  +       ++            ++    
Sbjct: 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235

Query: 253 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 302
                   K    D  +++  +  LG       + + A  L   A   R+
Sbjct: 236 EYGSWY--KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNRK 283

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  115 bits (290), Expect = 1e-29
 Identities = 57/292 (19%), Positives = 102/292 (34%), Gaps = 18/292 (6%)

Query: 61  SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 120
           S          +     AV +  + +  LE   G +  D+   L  L  ++  + K  +A
Sbjct: 3   SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62

Query: 121 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 180
             + +  L I  K  G++   V   + +LA      G  +EA  L K+AL + +      
Sbjct: 63  AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK----V 118

Query: 181 LDD------SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 234
           L          + N    LA L    G+ +E        L I     G + P+      N
Sbjct: 119 LGKFHPDVAKQLNN----LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174

Query: 235 LAASYSRSKNFVEAERLLRICLDIM-TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 293
           LA+ Y +   + +AE L +  L     K  G  +       +H        ++ +++   
Sbjct: 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234

Query: 294 VLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 345
                + +  A   DS  V   L  L ++  R G+ +     L     R ++
Sbjct: 235 GEYGSWYK--ACKVDSPTVNTTLRSLGALYRRQGKLE-AAHTLEDCASRNRK 283

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  112 bits (282), Expect = 1e-28
 Identities = 57/276 (20%), Positives = 92/276 (33%), Gaps = 22/276 (7%)

Query: 115 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174
                A  +  + L+   K  G +   V   +  LA         +EA  L   AL  I+
Sbjct: 15  VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALA-IR 73

Query: 175 DSNY--------MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 226
           +            +L++         LA L    G+ +E   L +  L I EK  GK HP
Sbjct: 74  EKTLGKDHPAVAATLNN---------LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124

Query: 227 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 286
                L NLA          E E   R  L+I    +GPDD +++    +L        +
Sbjct: 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184

Query: 287 DKEAEKLVLEALY-IREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 345
            ++AE L  E L    E  FG  +             +    +         +       
Sbjct: 185 YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR-DSAPYGEYGSW--Y 241

Query: 346 REFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 381
           +    +S  V  TL+ + +   + G+ E    L+  
Sbjct: 242 KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 98.0 bits (245), Expect = 2e-23
 Identities = 57/249 (22%), Positives = 92/249 (36%), Gaps = 22/249 (8%)

Query: 149 LAHAKCANGNAEEAVELYKKALRVIKDSNY--------MSLDDSIMENMRIDLAELLHIV 200
             H          AV L K+AL    +             L+          LA +    
Sbjct: 7   HHHHSSGLVPRGSAVPLCKQALE-DLEKTSGHDHPDVATMLNI---------LALVYRDQ 56

Query: 201 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 260
            + +E   LL + L I EK  GK+HP+    L NLA  Y +   + EAE L +  L+I  
Sbjct: 57  NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116

Query: 261 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 320
           K +G     ++  + +L +   +  + +E E     AL I     G D   V +  + L 
Sbjct: 117 KVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176

Query: 321 SIQTRLGEDDTKLLELLKRVL-RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK 379
           S   + G+       L K +L R  E+EFGS + +            +   ++ +  P  
Sbjct: 177 SCYLKQGKYQ-DAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235

Query: 380 KRLSNLRMK 388
           +       K
Sbjct: 236 EY--GSWYK 242

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 1/150 (0%)

Query: 232 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 291
             +     S       A  L +  L+ + KT G D   ++  +  L +     N+ KEA 
Sbjct: 4   SHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAA 63

Query: 292 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE 351
            L+ +AL IRE   GKD   V   L+ L  +  + G+   +   L KR L I+E+  G  
Sbjct: 64  HLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK-EAEPLCKRALEIREKVLGKF 122

Query: 352 SEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 381
             +V   L  +       G+ EE     +R
Sbjct: 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRR 152

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 28/109 (25%), Positives = 39/109 (35%), Gaps = 1/109 (0%)

Query: 273 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 332
              H       L     A  L  +AL   E   G D   V   L+ L  +     +   +
Sbjct: 3   SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK-E 61

Query: 333 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 381
              LL   L I+E+  G +   V  TL  +     K G+ +E  PL KR
Sbjct: 62  AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 110

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  124 bits (315), Expect = 4e-33
 Identities = 65/326 (19%), Positives = 119/326 (36%), Gaps = 25/326 (7%)

Query: 30  LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 89
           + ++           N+     G      + +L  +     S GR + AV +  + +  L
Sbjct: 1   MHHHHHH---SSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDL 57

Query: 90  ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 149
           E   G +  D+   L  L  ++  + K  DA ++ +  L I  K  G++   V   + +L
Sbjct: 58  EKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNL 117

Query: 150 AHAKCANGNAEEAVELYKKALRVIKDSNY--------MSLDDSIMENMRIDLAELLHIVG 201
           A      G  +EA  L K+AL  I++             L++         LA L    G
Sbjct: 118 AVLYGKRGKYKEAEPLCKRALE-IREKVLGKDHPDVAKQLNN---------LALLCQNQG 167

Query: 202 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 261
           + +E     +  L I +   G + P+      NLA+ Y +   F +AE L +  L    +
Sbjct: 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227

Query: 262 TV-GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 320
              G  D       +H         + K+         + +  A   DS  V   L  L 
Sbjct: 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK--ACKVDSPTVTTTLKNLG 285

Query: 321 SIQTRLGEDDTKLLELLKRVLRIQER 346
           ++  R G+ +     L +  +R +++
Sbjct: 286 ALYRRQGKFE-AAETLEEAAMRSRKQ 310

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  124 bits (315), Expect = 5e-33
 Identities = 59/293 (20%), Positives = 106/293 (36%), Gaps = 18/293 (6%)

Query: 18  AILLH-MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK 76
              LH +   Y++   YE ++ + ++ +  LE   G     + T L  +A V     + K
Sbjct: 27  LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86

Query: 77  KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 136
            A  + +  + I E   G +   +   L +L  L+ K GK  +AE +  R L+I  KV G
Sbjct: 87  DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146

Query: 137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD------SIMENMR 190
           ++   V   + +LA      G  EE    Y++AL + +      L            N  
Sbjct: 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT----KLGPDDPNVAKTKNN-- 200

Query: 191 IDLAELLHIVGRGQEGRELLEECLLIT-EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 249
             LA      G+ ++   L +E L    E+  G          ++            +  
Sbjct: 201 --LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258

Query: 250 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 302
                      K    D  +++  + +LG       + + AE L   A+  R+
Sbjct: 259 SFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  108 bits (272), Expect = 6e-27
 Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 3/239 (1%)

Query: 23  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 82
           +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G  G+ K+A  + 
Sbjct: 75  LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 134

Query: 83  HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 142
            R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY    G +D  V
Sbjct: 135 KRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV 194

Query: 143 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR 202
                +LA      G  ++A  LYK+ L    +  + S+DD           E     G+
Sbjct: 195 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM-HAEEREECKGK 253

Query: 203 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 261
            ++G    E       K    + P+  T L NL A Y R   F  AE L    +    +
Sbjct: 254 QKDGTSFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 94.5 bits (236), Expect = 5e-22
 Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 1/190 (0%)

Query: 192 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 251
           +L       GR +    L ++ L   EK  G +HP   T L  LA  Y     + +A  L
Sbjct: 32  NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANL 91

Query: 252 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 311
           L   L I  KT+G D  +++  + +L +      + KEAE L   AL IRE   GKD   
Sbjct: 92  LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD 151

Query: 312 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 371
           V + L+ L  +    G+ + ++    +R L I + + G +   V  T   + S   K G+
Sbjct: 152 VAKQLNNLALLCQNQGKYE-EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK 210

Query: 372 KEEKFPLKKR 381
            ++   L K 
Sbjct: 211 FKQAETLYKE 220

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 81.0 bits (201), Expect = 3e-17
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 1/168 (0%)

Query: 207 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 266
                    +  +  G E P+ +  L NL   Y+    +  A  L +  L+ + KT G D
Sbjct: 5   HHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD 64

Query: 267 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL 326
              ++  +  L +     N+ K+A  L+ +AL IRE   GKD   V   L+ L  +  + 
Sbjct: 65  HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR 124

Query: 327 GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE 374
           G+   +   L KR L I+E+  G +  +V   L  +       G+ EE
Sbjct: 125 GKYK-EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 60/357 (16%), Positives = 119/357 (33%), Gaps = 38/357 (10%)

Query: 10  KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 69
            +D   L AI   +G+ Y  L +Y K++  +   + +  +   +       +   +   L
Sbjct: 40  TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE--AKASGNLGNTL 97

Query: 70  GSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVD--------- 119
             +G   +A+    R + I  ELN     A     L++LG+++  +GK+           
Sbjct: 98  KVLGNFDEAIVCCQRHLDISRELNDKVGEARA---LYNLGNVYHAKGKSFGCPGPQDVGE 154

Query: 120 -----------AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 168
                      A   +   L + T +        G A  +L +     GN  +AV  +++
Sbjct: 155 FPEEVRDALQAAVDFYEENLSLVTALGDRAA--QGRAFGNLGNTHYLLGNFRDAVIAHEQ 212

Query: 169 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 228
            L + K+      D +       +L      +G  +   E  ++ LL+  + K       
Sbjct: 213 RLLIAKEFG----DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--RAVE 266

Query: 229 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK 288
                +L  +Y+  +++ +A       L I  +      +  +     LG     L    
Sbjct: 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC--WSLGNAYTALGNHD 324

Query: 289 EAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 345
           +A     + L I       D      A   L  +Q  LG   +    ++     I  
Sbjct: 325 QAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDS 379

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 65/378 (17%), Positives = 127/378 (33%), Gaps = 45/378 (11%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
           L   G       +    +  ++  + V      +    L      +      +    KA+
Sbjct: 12  LALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYLHDYAKAL 67

Query: 80  EIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138
           E +H  +T+   +      A       +LG+     G   +A     R L I  ++  + 
Sbjct: 68  EYHHHDLTLARTIGDQLGEAKA---SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 124

Query: 139 DGRVGMAMCSLAHAKCANGNA--------------------EEAVELYKKALRVIKDSNY 178
                 A+ +L +   A G +                    + AV+ Y++ L ++     
Sbjct: 125 G--EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG- 181

Query: 179 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 238
              D +       +L    +++G  ++     E+ LLI +++   +  +      NL  +
Sbjct: 182 ---DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNA 236

Query: 239 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 298
           Y     F  A    +  L +  +      ++ S     LG T   L   ++A    L+ L
Sbjct: 237 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC--YSLGNTYTLLQDYEKAIDYHLKHL 294

Query: 299 YI-REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML 357
            I +E+    D +  G A   L +  T LG  D + +   ++ L I  RE G +S E+  
Sbjct: 295 AIAQEL---NDRIGEGRACWSLGNAYTALGNHD-QAMHFAEKHLEIS-REVGDKSGELT- 348

Query: 358 TLKKVVSYLDKLGRKEEK 375
               +      LG     
Sbjct: 349 ARLNLSDLQMVLGLSYST 366

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 7/147 (4%)

Query: 12  DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 71
           D  +       +G+ Y+ L++YEK++  + + + + +    +       +   +     +
Sbjct: 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE--GRACWSLGNAYTA 319

Query: 72  IGRAKKAVEIYHRVITILE--LNRGTESA---DLVLPLFSLGSLFIKEGKAVDAESVFSR 126
           +G   +A+    + + I     ++  E     +L      LG  +      +   +    
Sbjct: 320 LGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDS 379

Query: 127 ILKIYTKVYGENDGRVGMAMCSLAHAK 153
            L       G       M +  L   K
Sbjct: 380 SLNGVRPKLGRRHSMENMELMKLTPEK 406

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 35/244 (14%), Positives = 65/244 (26%), Gaps = 43/244 (17%)

Query: 136 GENDGRVGMAMC--SLAHAKCANGNAEEAVELYKKALRVIKDSNY---MSLDDSIMENMR 190
           G         +         C +G+    V  ++ A++V  +                  
Sbjct: 1   GPGS-MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYS-------- 51

Query: 191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 250
             L      +    +  E     L +       +         NL  +     NF EA  
Sbjct: 52  -QLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIV 108

Query: 251 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL--------------------NRDKEA 290
             +  LDI  +      ++ +    +LG   +                      +  + A
Sbjct: 109 CCQRHLDISRELNDKVGEARAL--YNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166

Query: 291 EKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS 350
                E L +       D    G A   L +    LG      +   ++ L I  +EFG 
Sbjct: 167 VDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFR-DAVIAHEQRLLIA-KEFGD 222

Query: 351 ESEE 354
           ++ E
Sbjct: 223 KAAE 226

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 87.4 bits (217), Expect = 4e-19
 Identities = 54/351 (15%), Positives = 102/351 (29%), Gaps = 35/351 (9%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
                     L +       +           G +S+     L    + L + G  +  V
Sbjct: 11  ASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSM--CLELALEGERLCNAGDCRAGV 68

Query: 80  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 139
             +   I     +  T SA        LG+ +   G    A       L +   +     
Sbjct: 69  AFFQAAIQAGTEDLRTLSAI----YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124

Query: 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKAL---RVIKD--------SN----YMSLDDS 184
                +  +L +     G  +EA    ++ L   R + D         N    Y +    
Sbjct: 125 --EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKH 182

Query: 185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 244
           + +           +        E  +E L +       +  +      NL  +Y    +
Sbjct: 183 LGQRNPGKFG--DDVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGD 238

Query: 245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI-REI 303
           F  A    +  L I  +  G D  +      +LG +   L + ++A +     L +  E+
Sbjct: 239 FQAAIEHHQERLRIA-REFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL 296

Query: 304 AFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE 354
               +     ++   L +  T L E +   +E   R L I  +E G    E
Sbjct: 297 ---GEREVEAQSCYSLGNTYTLLHEFN-TAIEYHNRHLAIA-QELGDRIGE 342

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 55/351 (15%), Positives = 113/351 (32%), Gaps = 38/351 (10%)

Query: 11  DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV-LESRYGKTSILLVTSLLGMAKVL 69
           D    +   L   G       +    +  +Q  I    E         L      +    
Sbjct: 42  DGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRT-----LSAIYSQLGNAY 96

Query: 70  GSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 128
             +G   KA++ +   +T+   +N     A       +LG+     G+  +A     R L
Sbjct: 97  FYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS---SGNLGNTLKVMGRFDEAAICCERHL 153

Query: 129 KIYTKVYGEND---------------GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173
            +  ++                    G+                    AVE Y++ L+++
Sbjct: 154 TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213

Query: 174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL 233
           +D      D         +L    +++G  Q   E  +E L I  ++   +  +      
Sbjct: 214 RDLG----DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANS 267

Query: 234 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 293
           NL  S+     F +A    +  L +    +G + +  +     LG T   L+    A + 
Sbjct: 268 NLGNSHIFLGQFEDAAEHYKRTLALA-VELG-EREVEAQSCYSLGNTYTLLHEFNTAIEY 325

Query: 294 VLEALYI-REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 343
               L I +E+    D +    A   L +  + +G  + + L+  ++ L++
Sbjct: 326 HNRHLAIAQEL---GDRIGEARACWSLGNAHSAIGGHE-RALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 80.8 bits (200), Expect = 7e-17
 Identities = 52/309 (16%), Positives = 110/309 (35%), Gaps = 33/309 (10%)

Query: 10  KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 69
            +D   L AI   +G+ Y  L +Y K+M  ++  + + +S   +       S   +   L
Sbjct: 79  TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE--AKSSGNLGNTL 136

Query: 70  GSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVD--------- 119
             +GR  +A     R +T+  +L            L++LG+++  +GK +          
Sbjct: 137 KVMGRFDEAAICCERHLTLARQLGDRLSEGRA---LYNLGNVYHAKGKHLGQRNPGKFGD 193

Query: 120 --------AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171
                   A   +   LK+   +        G A  +L +     G+ + A+E +++ LR
Sbjct: 194 DVKEALTRAVEFYQENLKLMRDLGDRGA--QGRACGNLGNTYYLLGDFQAAIEHHQERLR 251

Query: 172 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 231
           + ++      D +       +L      +G+ ++  E  +  L +  +    E       
Sbjct: 252 IAREFG----DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQS 305

Query: 232 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 291
             +L  +Y+    F  A       L I  +      ++ +     LG     +   + A 
Sbjct: 306 CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARAC--WSLGNAHSAIGGHERAL 363

Query: 292 KLVLEALYI 300
           K   + L +
Sbjct: 364 KYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 58/312 (18%), Positives = 90/312 (28%), Gaps = 37/312 (11%)

Query: 61  SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 120
           S          +G        +         + G     + L L   G      G     
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGS--SMCLELALEGERLCNAGDCRAG 67

Query: 121 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 180
            + F   ++  T    E+   +      L +A    G+  +A++ +K  L + K  N   
Sbjct: 68  VAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN--- 120

Query: 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 240
            D         +L   L ++GR  E     E  L +  +    +  S    L NL   Y 
Sbjct: 121 -DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYH 177

Query: 241 R-----------------SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH-LGITLY 282
                              +    A    +  L +M        Q  +      LG T Y
Sbjct: 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRA---CGNLGNTYY 234

Query: 283 HLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR 342
            L   + A +   E L I    FG D      A   L +    LG+ +    E  KR L 
Sbjct: 235 LLGDFQAAIEHHQERLRIAR-EFG-DRAAERRANSNLGNSHIFLGQFE-DAAEHYKRTLA 291

Query: 343 IQEREFGSESEE 354
           +   E G    E
Sbjct: 292 LA-VELGEREVE 302

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 79.2 bits (196), Expect = 1e-16
 Identities = 50/313 (15%), Positives = 107/313 (34%), Gaps = 34/313 (10%)

Query: 10  KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 69
            +D   L AI   +G+ Y  L +Y K++  +   + +  +   +       +   +   L
Sbjct: 36  TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE--AKASGNLGNTL 93

Query: 70  GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD---------- 119
             +G   +A+    R + I               L++LG+++  +GK+            
Sbjct: 94  KVLGNFDEAIVCCQRHLDISRELNDKV--GEARALYNLGNVYHAKGKSFGCPGPQDTGEF 151

Query: 120 ----------AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 169
                     A  ++   L + T + G+     G A  +L +     GN  +AV  +++ 
Sbjct: 152 PEDVRNALQAAVDLYEENLSLVTAL-GDRAA-QGRAFGNLGNTHYLLGNFRDAVIAHEQR 209

Query: 170 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 229
           L + K+      D +       +L      +G  +   E  ++ LL+  + K        
Sbjct: 210 LLIAKEFG----DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--RAVEA 263

Query: 230 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 289
               +L  +Y+  +++ +A       L I  +      +  +     LG     L    +
Sbjct: 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC--WSLGNAYTALGNHDQ 321

Query: 290 AEKLVLEALYIRE 302
           A     + L I  
Sbjct: 322 AMHFAEKHLEISR 334

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 74.2 bits (183), Expect = 7e-15
 Identities = 59/348 (16%), Positives = 117/348 (33%), Gaps = 41/348 (11%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
           L   G       +    +  ++  + V      +    L      +      +    KA+
Sbjct: 8   LALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63

Query: 80  EIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138
           E +H  +T+   +      A       +LG+     G   +A     R L I  ++  + 
Sbjct: 64  EYHHHDLTLARTIGDQLGEAKA---SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 120

Query: 139 DGRVGMAMCSLAHAKCANGNA--------------------EEAVELYKKALRVIKDSNY 178
                 A+ +L +   A G +                    + AV+LY++ L ++     
Sbjct: 121 G--EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG- 177

Query: 179 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 238
              D +       +L    +++G  ++     E+ LLI +++   +  +      NL  +
Sbjct: 178 ---DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNA 232

Query: 239 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 298
           Y     F  A    +  L +  +      ++ S     LG T   L   ++A    L+ L
Sbjct: 233 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC--YSLGNTYTLLQDYEKAIDYHLKHL 290

Query: 299 YIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 346
            I +    KD +  G A   L +  T LG  D + +   ++ L I   
Sbjct: 291 AIAQEL--KDRIGEGRACWSLGNAYTALGNHD-QAMHFAEKHLEISRE 335

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 61.9 bits (151), Expect = 8e-11
 Identities = 44/271 (16%), Positives = 97/271 (35%), Gaps = 32/271 (11%)

Query: 12  DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 71
           D+        ++G+    L N++++++  QR +++      K       +L  +  V  +
Sbjct: 78  DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE--ARALYNLGNVYHA 135

Query: 72  IGRA--------------------KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 111
            G++                    + AV++Y   ++++      + A       +LG+  
Sbjct: 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT--ALGDRAAQGRAFGNLGNTH 193

Query: 112 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171
              G   DA     + L I  + +G+       A  +L +A    G  E A E YKK L 
Sbjct: 194 YLLGNFRDAVIAHEQRLLIAKE-FGDKAA-ERRAYSNLGNAYIFLGEFETASEYYKKTLL 251

Query: 172 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 231
           + +       D ++       L     ++   ++  +   + L I ++ K  +       
Sbjct: 252 LARQLK----DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRA 305

Query: 232 LLNLAASYSRSKNFVEAERLLRICLDIMTKT 262
             +L  +Y+   N  +A       L+I  + 
Sbjct: 306 CWSLGNAYTALGNHDQAMHFAEKHLEISREV 336

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 6/117 (5%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
             ++G+ Y  L  +E +   Y++ + +      +       S   +      +   +KA+
Sbjct: 226 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEKAI 283

Query: 80  EIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 135
           + + + + I  EL    +        +SLG+ +   G    A     + L+I  +V 
Sbjct: 284 DYHLKHLAIAQELK---DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 75.4 bits (185), Expect = 4e-15
 Identities = 38/338 (11%), Positives = 93/338 (27%), Gaps = 20/338 (5%)

Query: 11  DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 70
            ++ +          +     N +++  + +     LE          + +   + +VL 
Sbjct: 8   REDTMHAEFNALRAQVAINDGNPDEAERLAKLA---LEELPPGWFYSRIVATSVLGEVLH 64

Query: 71  SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130
             G   +++ +  +   +    +       +  L     +   +G    A     +  ++
Sbjct: 65  CKGELTRSLALMQQTEQMAR--QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122

Query: 131 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 190
             + + E        +   A    A    +EA    +  + V+                 
Sbjct: 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS-----YQPQQQLQCL 177

Query: 191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-NFVEAE 249
             L +     G     R  L     +     GK H  ++++   +   Y +   +   A 
Sbjct: 178 AMLIQCSLARGDLDNARSQLNRLENLLG--NGKYHSDWISNANKVRVIYWQMTGDKAAAA 235

Query: 250 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 309
             LR       K    ++  +     ++      L   + AE ++ E             
Sbjct: 236 NWLRHTA----KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 291

Query: 310 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQERE 347
           L     L  L  +  + G        +L   L++  R 
Sbjct: 292 LN--RNLLLLNQLYWQAGRKS-DAQRVLLDALKLANRT 326

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 69.6 bits (170), Expect = 2e-13
 Identities = 39/232 (16%), Positives = 68/232 (29%), Gaps = 14/232 (6%)

Query: 145 AMCSLAHAKCAN--GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR 202
           A  +   A+ A   GN +EA  L K AL  +    + S            L E+LH  G 
Sbjct: 14  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSR-----IVATSVLGEVLHCKGE 68

Query: 203 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 262
                 L+++   +  ++        +  L+  +           A         ++ + 
Sbjct: 69  LTRSLALMQQTEQMARQHD--VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 126

Query: 263 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI 322
                    F +      L+   R  EAE      + +      +  L     L  L+  
Sbjct: 127 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC---LAMLIQC 183

Query: 323 QTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE 374
               G+ D      L R+  +        S+ +    K  V Y    G K  
Sbjct: 184 SLARGDLD-NARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAA 233

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 75.2 bits (185), Expect = 4e-15
 Identities = 37/291 (12%), Positives = 89/291 (30%), Gaps = 19/291 (6%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
           L   G      + Y +++  Y+     L                 +A+    + +   ++
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEK--AEFHFKVAEAYYHMKQTHVSM 161

Query: 80  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 139
               + + I + N    S   +  LF +   +        A       L++   +  +  
Sbjct: 162 YHILQALDIYQ-NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220

Query: 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 199
             + +++ ++A++   +G+ + AVE ++KA +V ++     L   +       L+  L  
Sbjct: 221 --IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL-----FGLSWTLCK 273

Query: 200 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 259
            G+ Q+  + +EE L        K +      L  +       +   +        L   
Sbjct: 274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL-------LSYF 326

Query: 260 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL 310
            K                          ++A     + L  +E     + L
Sbjct: 327 EKKNLHAYIEACA--RSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECL 375

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 65.6 bits (160), Expect = 6e-12
 Identities = 41/276 (14%), Positives = 83/276 (30%), Gaps = 15/276 (5%)

Query: 32  NYEKSMLVYQRVINVLESRYGKTSILLVTSLLG-----MAKVLGSIGRAKKAVEIYHRVI 86
           +   + ++   V   ++       +L+  SL+      M   L           +   + 
Sbjct: 27  SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86

Query: 87  TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 146
           TI    +          LF  G     + + V+A   +    K    V  + +       
Sbjct: 87  TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE--KAEFH 144

Query: 147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEG 206
             +A A         ++    +AL + ++    S+       +   +A          + 
Sbjct: 145 FKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV---IAGNYDDFKHYDKA 201

Query: 207 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 266
              LE  L +      +        LLN+A SY RS +   A    +    +  + V   
Sbjct: 202 LPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259

Query: 267 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 302
              + F    L  TL    + ++A + + E L    
Sbjct: 260 LPKVLF---GLSWTLCKAGQTQKAFQFIEEGLDHIT 292

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 65.6 bits (160), Expect = 6e-12
 Identities = 41/290 (14%), Positives = 89/290 (30%), Gaps = 21/290 (7%)

Query: 15  LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT-SLLGMAKVLGSIG 73
           L+      M       + Y         ++  +E+   K + LL   SL           
Sbjct: 57  LMCFRHQLMLDYLEPGKTYGNR-PTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQK 115

Query: 74  RAKKAVEIYHRVITIL-ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 132
              +A+  Y      L  ++   E A+     F +   +    +   +     + L IY 
Sbjct: 116 EYVEAIGYYREAEKELPFVSDDIEKAEF---HFKVAEAYYHMKQTHVSMYHILQALDIYQ 172

Query: 133 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 192
                   R   ++  +A       + ++A+   + AL +  D          + N    
Sbjct: 173 NHP-LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN---- 227

Query: 193 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 252
           +A      G  Q   E  ++   ++ +      P     L  L+ +  ++    +A + +
Sbjct: 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV---LFGLSWTLCKAGQTQKAFQFI 284

Query: 253 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 302
              LD +T                L + L  + ++   E+ + + L   E
Sbjct: 285 EEGLDHITARSHKF-------YKELFLFLQAVYKETVDERKIHDLLSYFE 327

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 56.4 bits (136), Expect = 6e-09
 Identities = 30/221 (13%), Positives = 64/221 (28%), Gaps = 16/221 (7%)

Query: 5   IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 64
           I  +           L  +   Y   ++Y+K++   +  + +         I    SLL 
Sbjct: 170 IYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA--ISLLN 227

Query: 65  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 124
           +A      G  + AVE + +     +++R      L   LF L     K G+   A    
Sbjct: 228 IANSYDRSGDDQMAVEHFQKA---AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFI 284

Query: 125 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 184
              L   T    +    + + + ++           + +  ++K               +
Sbjct: 285 EEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-----------KNLHA 333

Query: 185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 225
            +E      A +       ++      + L   E     E 
Sbjct: 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGEC 374

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 30/194 (15%), Positives = 58/194 (29%), Gaps = 7/194 (3%)

Query: 156 NGNAEEAVELYKKALRVIK---DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 212
             +  +A  L  +  + I+   +   + +  S+M      + + L           + E 
Sbjct: 25  QFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84

Query: 213 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 272
              I    K          L          K +VEA    R     +      DD   + 
Sbjct: 85  LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAE 142

Query: 273 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 332
               +    YH+ +   +   +L+AL I +      S+   ++L  +          D K
Sbjct: 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQ-NHPLYSIRTIQSLFVIAGNYDDFKHYD-K 200

Query: 333 LLELLKRVLRIQER 346
            L  L+  L +   
Sbjct: 201 ALPHLEAALELAMD 214

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 73.3 bits (180), Expect = 2e-14
 Identities = 32/255 (12%), Positives = 80/255 (31%), Gaps = 16/255 (6%)

Query: 12  DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 71
           D          M   Y  ++    SM   ++   + +      +I L+      A     
Sbjct: 138 DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY-NIRLLQCHSLFATNFLD 196

Query: 72  IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 131
           + + + A+  + +  ++ E  +  +   +   L+++G     + +  DA   F R + ++
Sbjct: 197 LKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254

Query: 132 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 191
            +        +  A   +       G  ++A E + K +   + +          + + +
Sbjct: 255 EES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG---------DVIYL 303

Query: 192 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 251
              E L  +       E ++      E      +       +++A  Y   KNF +A   
Sbjct: 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAY 361

Query: 252 LRICLDIMTKTVGPD 266
                 +     G  
Sbjct: 362 FLKVEQVRQLIQGGV 376

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 72.5 bits (178), Expect = 3e-14
 Identities = 37/291 (12%), Positives = 100/291 (34%), Gaps = 18/291 (6%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
               G        Y  ++  +++  + L   + K  I        M++    + +   ++
Sbjct: 106 NFFRGMYELDQREYLSAIKFFKKAESKL--IFVKDRIEKAEFFFKMSESYYYMKQTYFSM 163

Query: 80  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 139
           +   +   I +      +  L+       + F+   +  DA S F +   +      +  
Sbjct: 164 DYARQAYEIYK-EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQP 220

Query: 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 199
             +G  + ++   K +    E+A+  +K+A+ V ++SN +             + ++ + 
Sbjct: 221 QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL----ITQIHYK 276

Query: 200 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 259
           +G+  +  E   + +  ++K     + S    L +L  S    +        L   +   
Sbjct: 277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY- 335

Query: 260 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL 310
                 D +  +   + +    +     ++A    L+   +R++  G  SL
Sbjct: 336 -----ADLEDFA---IDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSL 378

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 56.4 bits (136), Expect = 5e-09
 Identities = 33/221 (14%), Positives = 73/221 (33%), Gaps = 15/221 (6%)

Query: 5   IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG 64
           I    +     L        + +  L+ YE ++  +Q+  ++ E+      +    +L  
Sbjct: 172 IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG--RTLYN 229

Query: 65  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 124
           +     S  + + A+  + R I + E         L    F +  +  K GK   A    
Sbjct: 230 IGLCKNSQSQYEDAIPYFKRAIAVFE--ESNILPSLPQAYFLITQIHYKLGKIDKAHEYH 287

Query: 125 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 184
           S+ +    K        + ++      +   +G  EEA++ +   L              
Sbjct: 288 SKGMAYSQKA----GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYAD------ 337

Query: 185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH 225
            +E+  ID+A+  H     Q+      +   + +  +G   
Sbjct: 338 -LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVS 377

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 18/196 (9%), Positives = 60/196 (30%), Gaps = 9/196 (4%)

Query: 156 NGNAEEAVELYKKALRVIK---DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 212
             +  +A  L ++  + +    +   + L  S+ME     + E L  + + +   +    
Sbjct: 25  RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLS 84

Query: 213 CLLITEKYKGKEHPSFVT--HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 270
            LL+    K       +               + ++ A +  +     +      D    
Sbjct: 85  DLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEK 142

Query: 271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD 330
           +     +  + Y++ +   +     +A  I +      ++ + +      +    L + +
Sbjct: 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYK-EHEAYNIRLLQCHSLFATNFLDLKQYE 201

Query: 331 TKLLELLKRVLRIQER 346
              +   ++   + E 
Sbjct: 202 -DAISHFQKAYSMAEA 216

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 44/269 (16%), Positives = 77/269 (28%), Gaps = 42/269 (15%)

Query: 23  MGSMYSTLEN-YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 81
           +G  Y  + +  E +     +    LE  YG        + +             +A+  
Sbjct: 96  VGCYYLMVGHKNEHARRYLSKATT-LEKTYGP-------AWIAYGHSFAVESEHDQAMAA 147

Query: 82  YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 141
           Y     +             LP+  +G  +     +  AE  FS+ L I           
Sbjct: 148 YFTAAQL--------MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APE 191

Query: 142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 201
               M  +      NG  + A + +  AL  IK        D   E +  +L  +   + 
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK-WEPLLNNLGHVCRKLK 250

Query: 202 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 261
           +  E  +   + L++         P   +    +   +S   NF  A       L +   
Sbjct: 251 KYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--- 299

Query: 262 TVGPDDQSISFPMLHLGITLYHLNRDKEA 290
               DD         LG  +     D EA
Sbjct: 300 --RRDDTFSVT---MLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 31/285 (10%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 19  ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 78
           +++ +   +    +++    +   V+           + +          L  + +A + 
Sbjct: 24  VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG--------TLVELNKANEL 75

Query: 79  VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRILKIYTKVYGE 137
             + H+++   +L          +  F++G  ++  G   + A    S+   +       
Sbjct: 76  FYLSHKLV---DLYP-----SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL------- 120

Query: 138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 197
            +   G A  +  H+       ++A+  Y  A + +    ++ +         + +    
Sbjct: 121 -EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ-LMKGCHLPM---------LYIGLEY 169

Query: 198 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 257
            +    +       + L I         P     +  +     ++  +  AE+     L+
Sbjct: 170 GLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221

Query: 258 IMTKTVGPDDQSISFPML-HLGITLYHLNRDKEAEKLVLEALYIR 301
            +             P+L +LG     L +  EA     +AL + 
Sbjct: 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 22/154 (14%), Positives = 51/154 (33%), Gaps = 17/154 (11%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
           +L++G  Y    N + +   + + ++ +              +  +  V    G  K A 
Sbjct: 162 MLYIGLEYGLTNNSKLAERFFSQALS-IAPED-------PFVMHEVGVVAFQNGEWKTAE 213

Query: 80  EIYHRVITIL-ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138
           + +   +  +  +            L +LG +  K  K  +A     + L +        
Sbjct: 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-------- 265

Query: 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172
             +      ++ +     GN E AV+ +  AL +
Sbjct: 266 IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 16/152 (10%), Positives = 48/152 (31%), Gaps = 18/152 (11%)

Query: 17  DAILLH-MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL-GMAKVLGSIGR 74
           D  ++H +G +      ++ +   +   +  +++   + ++     LL  +  V   + +
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251

Query: 75  AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 134
             +A++ + + + +                 ++G +    G   +A   F   L +    
Sbjct: 252 YAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL---- 299

Query: 135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELY 166
                     ++  L H         EA    
Sbjct: 300 ----RRDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 61.1 bits (149), Expect = 4e-11
 Identities = 28/212 (13%), Positives = 58/212 (27%), Gaps = 11/212 (5%)

Query: 117 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 176
           A +A        +    +   +      A   L +        +EA   ++   +  + S
Sbjct: 2   AFEAHDYALAERQAQALL--AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS 59

Query: 177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 236
                D +        +  +  + G     R    E   +      ++  +   +   +A
Sbjct: 60  G----DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVA 114

Query: 237 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 296
                  +   A +     L    +    D  +I+     LG          EA++  L 
Sbjct: 115 TVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172

Query: 297 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGE 328
           A  I       DS  V E +  L  ++     
Sbjct: 173 ARDIFA-ELE-DSEAVNELMTRLNGLEHHHHH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 18/162 (11%), Positives = 52/162 (32%), Gaps = 5/162 (3%)

Query: 11  DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 70
                       +G +Y+ ++ ++++   +Q +    +     T+     +L  +  V  
Sbjct: 20  AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAE--HRALHQVGMVER 77

Query: 71  SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130
             G    A   +     +L  +   +        + + ++ +  G    A   + + L  
Sbjct: 78  MAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136

Query: 131 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172
             +   ++   +  A   L        N  EA + + +A  +
Sbjct: 137 AQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 48.4 bits (116), Expect = 9e-07
 Identities = 23/219 (10%), Positives = 55/219 (25%), Gaps = 24/219 (10%)

Query: 30  LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI- 88
            +               L             +   +  V   + R  +A   +  +    
Sbjct: 6   HDYALAERQAQAL----LAHPAT-----ASGARFMLGYVYAFMDRFDEARASFQALQQQA 56

Query: 89  --LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 146
                +     A     L  +G +    G    A   F    ++   +  E+        
Sbjct: 57  QKSGDHTAEHRA-----LHQVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANA 110

Query: 147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEG 206
             +A      G+   A + Y+K+L   + ++    D   +      L +L        E 
Sbjct: 111 YEVATVALHFGDLAGARQEYEKSLVYAQQAD----DQVAIACAFRGLGDLAQQEKNLLEA 166

Query: 207 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF 245
           ++       I  +   ++  +    +  L        + 
Sbjct: 167 QQHWLRARDIFAEL--EDSEAVNELMTRLNGLEHHHHHH 203

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 44/287 (15%), Positives = 92/287 (32%), Gaps = 60/287 (20%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
             ++G++Y      ++++  Y+  +  L+  +       +   + +A  L + G  + AV
Sbjct: 70  YSNLGNVYKERGQLQEAIEHYRHALR-LKPDF-------IDGYINLAAALVAAGDMEGAV 121

Query: 80  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 136
           + Y   +          + DL      LG+L    G+  +A++ + + ++    +   + 
Sbjct: 122 QAYVSALQY--------NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW- 172

Query: 137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL 196
                      +L     A G    A+  ++KA+  +  +   +          I+L  +
Sbjct: 173 ----------SNLGCVFNAQGEIWLAIHHFEKAVT-LDPNFLDAY---------INLGNV 212

Query: 197 LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 256
           L                L +         P+      NLA  Y        A    R  +
Sbjct: 213 LKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264

Query: 257 DIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYIR 301
           ++      P      FP  +  L   L       EAE     AL + 
Sbjct: 265 EL-----QPH-----FPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 48/283 (16%), Positives = 97/283 (34%), Gaps = 56/283 (19%)

Query: 22  HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 81
            +G++   L   E++   Y + I   +  +         +   +  V  + G    A+  
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIE-TQPNF-------AVAWSNLGCVFNAQGEIWLAIHH 191

Query: 82  YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEN 138
           + + +T+          + +    +LG++  +      A + + R L +   +  V+G  
Sbjct: 192 FEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG-- 241

Query: 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH 198
                    +LA      G  + A++ Y++A+  ++     +           +LA  L 
Sbjct: 242 ---------NLACVYYEQGLIDLAIDTYRRAIE-LQPHFPDAY---------CNLANALK 282

Query: 199 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 258
             G   E  +     L +         P+    L NLA       N  EA RL R  L++
Sbjct: 283 EKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 259 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301
                 P+  +      +L   L    + +EA     EA+ I 
Sbjct: 335 F-----PEFAAAHS---NLASVLQQQGKLQEALMHYKEAIRIS 369

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.5 bits (145), Expect = 6e-10
 Identities = 40/284 (14%), Positives = 84/284 (29%), Gaps = 60/284 (21%)

Query: 23  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 82
           + +      + E ++  Y   +                    +  +L ++GR ++A   Y
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQ-YNPDL-------YCVRSDLGNLLKALGRLEEAKACY 158

Query: 83  HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 139
            + I            +  +   +LG +F  +G+   A   F + + +   +   Y    
Sbjct: 159 LKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY---- 206

Query: 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 199
                   +L +        + AV  Y +AL  +  ++ +            +LA + + 
Sbjct: 207 -------INLGNVLKEARIFDRAVAAYLRALS-LSPNHAVVH---------GNLACVYYE 249

Query: 200 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 259
            G      +     + +         P F     NLA +     +  EAE      L + 
Sbjct: 250 QGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

Query: 260 TKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYIR 301
                P             L          +EA +L  +AL + 
Sbjct: 302 -----PT-----HADSLNNLANIKREQGNIEEAVRLYRKALEVF 335

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.8 bits (138), Expect = 4e-09
 Identities = 45/265 (16%), Positives = 96/265 (36%), Gaps = 56/265 (21%)

Query: 23  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 82
           +G +++       ++  +++ +  L+  +       + + + +  VL       +AV  Y
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVT-LDPNF-------LDAYINLGNVLKEARIFDRAVAAY 226

Query: 83  HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 139
            R +++        S +  +   +L  ++ ++G    A   + R +++   +   Y    
Sbjct: 227 LRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY---- 274

Query: 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 199
                  C+LA+A    G+  EA + Y  ALR +  ++  SL          +LA +   
Sbjct: 275 -------CNLANALKEKGSVAEAEDCYNTALR-LCPTHADSL---------NNLANIKRE 317

Query: 200 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 259
            G  +E   L  + L +         P F     NLA+   +     EA    +  + I 
Sbjct: 318 QGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369

Query: 260 TKTVGPDDQSISFPMLHLGITLYHL 284
                P          ++G TL  +
Sbjct: 370 -----PTFADAYS---NMGNTLKEM 386

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.8 bits (138), Expect = 4e-09
 Identities = 41/288 (14%), Positives = 85/288 (29%), Gaps = 60/288 (20%)

Query: 19  ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 78
           +LL + S++      ++S       I                +   +  V    G+ ++A
Sbjct: 35  VLLLLSSIHFQCRRLDRSAHFSTLAIK-QNPLL-------AEAYSNLGNVYKERGQLQEA 86

Query: 79  VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVY 135
           +E Y   + +          D +    +L +  +  G    A   +   L+       V 
Sbjct: 87  IEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138

Query: 136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 195
                        L +   A G  EEA   Y KA+   + +  ++           +L  
Sbjct: 139 -----------SDLGNLLKALGRLEEAKACYLKAIE-TQPNFAVAW---------SNLGC 177

Query: 196 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 255
           + +  G         E+ + +         P+F+   +NL      ++ F  A       
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229

Query: 256 LDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYIR 301
           L +      P+       ++H  L    Y       A      A+ ++
Sbjct: 230 LSLS-----PN-----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 34/195 (17%)

Query: 107 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 166
           L     + G    AE    ++ +                +  L+         + +    
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNT--------GVLLLLSSIHFQCRRLDRSAHFS 56

Query: 167 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 226
             A++        +           +L  +    G+ QE  E     L +         P
Sbjct: 57  TLAIK-QNPLLAEAY---------SNLGNVYKERGQLQEAIEHYRHALRL--------KP 98

Query: 227 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 286
            F+   +NLAA+   + +   A +     L        PD   +      LG  L  L R
Sbjct: 99  DFIDGYINLAAALVAAGDMEGAVQAYVSALQY-----NPDLYCV---RSDLGNLLKALGR 150

Query: 287 DKEAEKLVLEALYIR 301
            +EA+   L+A+  +
Sbjct: 151 LEEAKACYLKAIETQ 165

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 35/242 (14%), Positives = 66/242 (27%), Gaps = 46/242 (19%)

Query: 62  LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 121
            + +A      G  + A     ++             D    L  L S+  +  +   + 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCRRLDRSA 53

Query: 122 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 181
              +  +K    +          A  +L +     G  +EA+E Y+ ALR +K       
Sbjct: 54  HFSTLAIKQNPLLA--------EAYSNLGNVYKERGQLQEAIEHYRHALR-LKPDFIDGY 104

Query: 182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 241
                    I+LA  L   G  +   +     L          +P       +L      
Sbjct: 105 ---------INLAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVRSDLGNLLKA 147

Query: 242 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALY 299
                EA+      ++       P+     F +    LG           A     +A+ 
Sbjct: 148 LGRLEEAKACYLKAIET-----QPN-----FAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

Query: 300 IR 301
           + 
Sbjct: 198 LD 199

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 43/324 (13%), Positives = 115/324 (35%), Gaps = 28/324 (8%)

Query: 26  MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV 85
           +       E++ + +++ +   + +  + +  L  +       L +   ++ A++   + 
Sbjct: 147 LKCGGNQNERAKVCFEKALE-KKPKNPEFTSGLAIASY----RLDNWPPSQNAIDPLRQA 201

Query: 86  ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA 145
           I    LN   +    VL    L  +  +  +  + E +    L+    V           
Sbjct: 202 I---RLNPDNQYL-KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT--------DV 249

Query: 146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSN--YMSLDDSIMENMRIDLAELLHIVGRG 203
           + S A         ++A+EL KKAL  I ++   +  +       +   +    + +   
Sbjct: 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309

Query: 204 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 263
           ++  EL+   +   +K   + + +       LA+ ++ +  + EAE   +          
Sbjct: 310 RKLLELIGHAVAHLKKAD-EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK----- 363

Query: 264 GPDDQSISFPMLHLGITL-YHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI 322
                +     L  G    Y +  + +A    +E + I + +  K+ +   + L  +  +
Sbjct: 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM--KDKLQKIAKM 421

Query: 323 QTRLGEDDTKLLELLKRVLRIQER 346
           +      D++ L +L  +  + E+
Sbjct: 422 RLSKNGADSEALHVLAFLQELNEK 445

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 17/185 (9%)

Query: 110 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 169
           L   E    D E       K++ +   +N          LA+ K   G  E A+E  +KA
Sbjct: 24  LMEGENSLDDFED------KVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKA 77

Query: 170 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 229
             +I+  +    +   +     + A + + +GR  + +  +++   + EK+         
Sbjct: 78  EELIQQEHADQAEIRSLVTW-GNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136

Query: 230 THLLNLAASYSR--SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD 287
                   +  +        A+      L+       P +   +     L I  Y L+  
Sbjct: 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTS---GLAIASYRLDNW 188

Query: 288 KEAEK 292
             ++ 
Sbjct: 189 PPSQN 193

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 24/174 (13%), Positives = 50/174 (28%), Gaps = 30/174 (17%)

Query: 15  LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR 74
           +++     M      LE    ++   ++                      +A +     +
Sbjct: 298 VMNLRENGMYGKRKLLELIGHAVAHLKKADE-ANDNL-------FRVCSILASLHALADQ 349

Query: 75  AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRILKIYTK 133
            ++A   + +  +  EL          L     G+  + + K  D A   F   +KI  K
Sbjct: 350 YEEAEYYFQKEFS-KELT----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404

Query: 134 VYG----------------ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171
                                +G    A+  LA  +  N   ++A E  ++ L 
Sbjct: 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 24/195 (12%), Positives = 64/195 (32%), Gaps = 13/195 (6%)

Query: 65  MAKVLGSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESV 123
            A    +  + ++A + Y +             +A         G +     +  +A   
Sbjct: 42  AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKA---FEQAGMMLKDLQRMPEAVQY 98

Query: 124 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 183
             +   +Y +    +     MA+           +  +AV LY++A  V ++   +    
Sbjct: 99  IEKASVMYVENGTPD--TAAMALDRAGKL-MEPLDLSKAVHLYQQAAAVFENEERLRQAA 155

Query: 184 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 243
            ++       + LL    +  E    L++   + ++ +   +P+     +          
Sbjct: 156 ELIGKA----SRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRA 209

Query: 244 NFVEAERLLRICLDI 258
           ++V A++ +R    I
Sbjct: 210 DYVAAQKCVRESYSI 224

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 29/219 (13%), Positives = 64/219 (29%), Gaps = 18/219 (8%)

Query: 155 ANGNAEEAVELYKKALRVIKDSNYMSLDD-----SIMENMRIDLAELLHIVGRGQEGREL 209
           A     EA E   KA + +K S      D     S         A       + ++ ++ 
Sbjct: 3   AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKA----AVAFKNAKQLEQAKDA 58

Query: 210 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 269
             +        +   H +               +   EA + +     +  +   PD  +
Sbjct: 59  YLQEAEAHANNRSLFHAA--KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116

Query: 270 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED 329
           ++   L     L       +A  L  +A  + E    +      E +     +  R  + 
Sbjct: 117 MA---LDRAGKLMEPLDLSKAVHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKF 171

Query: 330 DTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK 368
           D +    L++   + + E  +        + +V+  L +
Sbjct: 172 D-EAAASLQKEKSMYK-EMENYPTCYKKCIAQVLVQLHR 208

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 11/165 (6%)

Query: 18  AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 77
           A+ L          +  K++ +YQ+   V E+            +   +++L    +  +
Sbjct: 116 AMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQA--AELIGKASRLLVRQQKFDE 173

Query: 78  AVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 136
           A     +  ++  E+              +   + +     V A+            + G
Sbjct: 174 AAASLQKEKSMYKEMENYPTCYKK---CIAQVLVQLHRADYVAAQKCVRE----SYSIPG 226

Query: 137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 181
            +      A+  L  A     + E+ + + +  L    D++Y  L
Sbjct: 227 FSGSEDCAALEDLLQA-YDEQDEEQLLRVCRSPLVTYMDNDYAKL 270

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 8/159 (5%)

Query: 18  AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 77
               ++G+ +  L N+  +++ +++ + + +    K +     +   +      +G  + 
Sbjct: 10  RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RIAYSNLGNAYIFLGEFET 67

Query: 78  AVEIYHRVITILELNRGT-ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 136
           A E Y +    L L R   + A      +SLG+ +        A     + L I  ++  
Sbjct: 68  ASEYYKKT---LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175
                 G A  SL +A  A GN ++A+   +K L + ++
Sbjct: 125 RIG--EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 11/169 (6%)

Query: 136 GENDGRVGMAMC--SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 193
           G    R        +L +     GN  +AV  +++ L + K+    + +     N    L
Sbjct: 1   GPGS-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSN----L 55

Query: 194 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 253
                 +G  +   E  ++ LL+  + K            +L  +Y+  +++ +A     
Sbjct: 56  GNAYIFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHL 113

Query: 254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 302
             L I  +      +  +     LG     L    +A     + L I  
Sbjct: 114 KHLAIAQELKDRIGEGRAC--WSLGNAYTALGNHDQAMHFAEKHLEISR 160

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 8/158 (5%)

Query: 104 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 163
             +LG+     G   DA     + L I  +   +      +A  +L +A    G  E A 
Sbjct: 12  FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ERIAYSNLGNAYIFLGEFETAS 69

Query: 164 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 223
           E YKK L + +     +++     +    L     ++   ++  +   + L I ++ K  
Sbjct: 70  EYYKKTLLLARQLKDRAVEAQSCYS----LGNTYTLLQDYEKAIDYHLKHLAIAQELK-- 123

Query: 224 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 261
           +         +L  +Y+   N  +A       L+I  +
Sbjct: 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 18/125 (14%), Positives = 45/125 (36%), Gaps = 6/125 (4%)

Query: 11  DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 70
            D+        ++G+ Y  L  +E +   Y++ + +      +       S   +     
Sbjct: 43  GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE--AQSCYSLGNTYT 100

Query: 71  SIGRAKKAVEIYHRVITILELNRGT-ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 129
            +   +KA++ + +    L + +   +        +SLG+ +   G    A     + L+
Sbjct: 101 LLQDYEKAIDYHLKH---LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157

Query: 130 IYTKV 134
           I  +V
Sbjct: 158 ISREV 162

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 40/293 (13%), Positives = 85/293 (29%), Gaps = 44/293 (15%)

Query: 9   LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 68
           L+ D   LD   LH  +         K  L+   +++               + L +   
Sbjct: 332 LEIDPYNLDVYPLH-LASLHESGEKNKLYLISNDLVD-RHPEK-------AVTWLAVGIY 382

Query: 69  LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 128
              + +  +A   + +      ++     A            F  EG+   A S ++   
Sbjct: 383 YLCVNKISEARRYFSKSS---TMDPQFGPA-----WIGFAHSFAIEGEHDQAISAYTTAA 434

Query: 129 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 188
           +++   +        +    L       GN   A E  + +   +   + + L       
Sbjct: 435 RLFQGTH--------LPYLFLGMQHMQLGNILLANEYLQSSYA-LFQYDPLLL------- 478

Query: 189 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 248
              +L  +       Q      +  LL+ +K        +     NL  +Y + K +  A
Sbjct: 479 --NELGVVAFNKSDMQTAINHFQNALLLVKKT-QSNEKPWAATWANLGHAYRKLKMYDAA 535

Query: 249 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301
              L   L +       +D ++      + +   H      A   + E+L I 
Sbjct: 536 IDALNQGLLL-----STNDANVHT---AIALVYLHKKIPGLAITHLHESLAIS 580

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 36/283 (12%), Positives = 81/283 (28%), Gaps = 43/283 (15%)

Query: 19  ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 78
           +LL           +   + +  +++ +            +         L   G   K 
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYN--------LDVYPLHLASLHESGEKNKL 358

Query: 79  VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138
             I + ++   + +      +  +   ++G  ++   K  +A   FS+   +        
Sbjct: 359 YLISNDLV---DRHP-----EKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-------- 402

Query: 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH 198
           D + G A    AH+    G  ++A+  Y  A R +    ++           + L     
Sbjct: 403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR-LFQGTHLPY---------LFLGMQHM 452

Query: 199 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 258
            +G      E L+    +               L  L        +   A    +  L +
Sbjct: 453 QLGNILLANEYLQSSYAL--------FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504

Query: 259 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301
           + KT   +    +    +LG     L     A   + + L + 
Sbjct: 505 VKKTQSNEKPWAA-TWANLGHAYRKLKMYDAAIDALNQGLLLS 546

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 44/395 (11%), Positives = 110/395 (27%), Gaps = 86/395 (21%)

Query: 3   SGIVDSLKDDEPLLDAILLH-MGSMYSTLENYEKSMLVYQRVIN---------------- 45
           +     ++D    L+A + +  G +Y+ L N++++   Y+  +                 
Sbjct: 185 NANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244

Query: 46  ----------VLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 95
                     VL+  Y   S      L  +  +  +    +  +      ++ +      
Sbjct: 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE-- 302

Query: 96  ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 155
           +S+DL   L           + +D  ++ ++IL+I      +              +   
Sbjct: 303 KSSDL---LLCKADTLFVRSRFIDVLAITTKILEIDPY-NLD-------VYPLHLASLHE 351

Query: 156 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 215
           +G   +   +    +        ++          + +      V +  E R    +   
Sbjct: 352 SGEKNKLYLISNDLVD-RHPEKAVTW---------LAVGIYYLCVNKISEARRYFSKSST 401

Query: 216 ITEKY------KG------KEH--------------PSFVTHLLNLAASYSRSKNFVEAE 249
           +  ++               EH                     L L   + +  N + A 
Sbjct: 402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461

Query: 250 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 309
             L+    +        D      +  LG+  ++ +  + A      AL + +     + 
Sbjct: 462 EYLQSSYALF-----QYD---PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513

Query: 310 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 344
            P       L     +L   D   ++ L + L + 
Sbjct: 514 -PWAATWANLGHAYRKLKMYD-AAIDALNQGLLLS 546

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 2e-09
 Identities = 60/431 (13%), Positives = 134/431 (31%), Gaps = 98/431 (22%)

Query: 10  KDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILL-----VTSLL 63
             + P  + +L  +  +   ++ N+         +   + S   +   LL        LL
Sbjct: 191 NCNSP--ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 64  GMAKVLGSIGRAK--KAVEIYHRVITILELNRGTESADLV-------LPLFSLGSLFIKE 114
               VL ++  AK   A  +  +   IL   R  +  D +       + L         +
Sbjct: 249 ----VLLNVQNAKAWNAFNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 115 GKAVDAESVFSRILKIYTK-----VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 169
               + +S+  + L    +     V   N  R+ +   S+        N +       K 
Sbjct: 302 ----EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--NCDKL 355

Query: 170 LRVIKDSNYMSLDDSIMENMRIDLA----------ELLHIV---GRGQEGRELLEEC--- 213
             +I+ S    L+ +    M   L+           LL ++       +   ++ +    
Sbjct: 356 TTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 214 LLITEKYKGKEHPSFVTHLLNLAASYSRS--------KNFVEAERLLRICLDIMTKTVGP 265
            L+ ++ K          + ++               ++ V+   + +   D        
Sbjct: 415 SLVEKQPK-----ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPY 468

Query: 266 DDQSISFPMLHLGITLYHLNRDKEAEKLVL-EALYIREIAFGKDSL-PVGEALDCLVSIQ 323
            DQ       H+G   +HL   +  E++ L   +++ +  F +  +     A +   SI 
Sbjct: 469 LDQYFYS---HIG---HHLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDSTAWNASGSIL 521

Query: 324 TRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS 383
             L +     L+  K  +   + ++           + V + LD L + EE         
Sbjct: 522 NTLQQ-----LKFYKPYICDNDPKYE----------RLVNAILDFLPKIEENL------- 559

Query: 384 NLRMKYKQKVQ 394
            +  KY   ++
Sbjct: 560 -ICSKYTDLLR 569

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 4e-07
 Identities = 66/365 (18%), Positives = 113/365 (30%), Gaps = 90/365 (24%)

Query: 40  YQRVINVLESRYGKTSILLVTSLLGMAK-VLGS-----IGRAKKAVEIYHRVITILELNR 93
           Y+ +++V E  +          +  M K +L       I  +K AV    R+   L L++
Sbjct: 18  YKDILSVFEDAFVDN--FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL-LSK 74

Query: 94  GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY------TKVYGE------NDGR 141
             E              F++E   ++ + + S I          T++Y E      ND +
Sbjct: 75  QEEMVQK----------FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 201
           V             N +  +     ++AL  ++ +  +                L+   G
Sbjct: 125 VFAKY---------NVSRLQPYLKLRQALLELRPAKNV----------------LID--G 157

Query: 202 RGQEGRELL--EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 259
               G+  +  + CL     YK +    F    LNL      S   V  E L ++   I 
Sbjct: 158 VLGSGKTWVALDVCL----SYKVQCKMDFKIFWLNLK--NCNSPETV-LEMLQKLLYQID 210

Query: 260 TKTVGPDDQSISFPMLHLGITLYHLNR---DKEAEK--LVLEALYIREI--AFGKDSLPV 312
                  D S +   L +      L R    K  E   LVL  +   +   AF       
Sbjct: 211 PNWTSRSDHSSNIK-LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN------ 263

Query: 313 GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRK 372
              L C + + TR  +    L       + +         +EV   L K       L  +
Sbjct: 264 ---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY------LDCR 314

Query: 373 EEKFP 377
            +  P
Sbjct: 315 PQDLP 319

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 56.0 bits (134), Expect = 8e-09
 Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 3/119 (2%)

Query: 204 QEGRELLEECLLITEKYKGKEHPSFVTHL---LNLAASYSRSKNFVEAERLLRICLDIMT 260
           +   ELLE C L  EK       S V  L             +++  A +  +  +   +
Sbjct: 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS 371

Query: 261 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCL 319
           K       +++   L LG     L      EK + +A+ I E+A GKD   + E    +
Sbjct: 372 KHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 46.4 bits (109), Expect = 9e-06
 Identities = 10/79 (12%), Positives = 33/79 (41%)

Query: 19  ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 78
           ++     +   ++++E ++   Q++I      Y   S+ + +  L + ++   +      
Sbjct: 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAG 401

Query: 79  VEIYHRVITILELNRGTES 97
            +   + I I+E+  G + 
Sbjct: 402 EKALKKAIAIMEVAHGKDH 420

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 46.4 bits (109), Expect = 9e-06
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 156 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 215
             +  E +E+ + +    K S+     +  M +M      +   +   +   +  ++ + 
Sbjct: 311 YKSPSELLEICELSQE--KMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368

Query: 216 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 266
              K+      +  +  L L   Y   +N    E+ L+  + IM    G D
Sbjct: 369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD 419

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 14/104 (13%), Positives = 32/104 (30%)

Query: 71  SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130
                 + +EI       +       +  ++  ++    + +       A     +I+K 
Sbjct: 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369

Query: 131 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174
           Y+K Y      V      L        N     +  KKA+ +++
Sbjct: 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 55.7 bits (133), Expect = 1e-08
 Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 3/168 (1%)

Query: 153 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 212
            C  G  ++     K+  +  ++     +  S     +ID A    +     E  +L  E
Sbjct: 278 HCQKGLKDDLFLAAKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLY---HEVVKLCRE 334

Query: 213 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 272
           CL   E      +   +  L   +   S  + + EA    R  +D   K    ++  +  
Sbjct: 335 CLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394

Query: 273 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 320
            ++  G+T +H    +    ++ +A  I  +  G       +     +
Sbjct: 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRM 442

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 46.1 bits (108), Expect = 1e-05
 Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 9/162 (5%)

Query: 71  SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130
           S G   + V++    +   E      +  ++  L     +        +A     R++  
Sbjct: 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG 380

Query: 131 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI-----KDSNYMSLDDSI 185
           Y K+Y  N+ ++GMA+          G+ E    +  KA  ++                 
Sbjct: 381 YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT----KD 436

Query: 186 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS 227
           +E MR+     L +  + +     + E  L  +  +    PS
Sbjct: 437 LEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQVMAEPS 478

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 41/290 (14%), Positives = 84/290 (28%), Gaps = 43/290 (14%)

Query: 13  EPLLDAILLHMGSMYSTLENYEKSMLVYQRVI-------NVLESRYGKTSILLVTSLLGM 65
           +    A  L  G +       +++   +++V+          E+         +  L   
Sbjct: 67  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ 126

Query: 66  AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS 125
           A           A+    +++ +                      FIKEG+   A S   
Sbjct: 127 ALDAFDGADYTAAITFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLK 178

Query: 126 RILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--YMS 180
              K+    T+ +             ++      G+ E ++   ++ L++ +D    +  
Sbjct: 179 AASKLKSDNTEAF-----------YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227

Query: 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 240
                  N  I+ AE L   GR  +     E  +    K +       V     +   +S
Sbjct: 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVM----KTEPSVAEYTVRSKERICHCFS 283

Query: 241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 290
           + +  VEA R+    L +      PD+      +              EA
Sbjct: 284 KDEKPVEAIRICSEVLQME-----PDN---VNALKDRAEAYLIEEMYDEA 325

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 43/298 (14%), Positives = 84/298 (28%), Gaps = 57/298 (19%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
            L +G           ++  +   ++  +            +    A V  ++G++K A+
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAVD-GDPDN-------YIAYYRRATVFLAMGKSKAAL 57

Query: 80  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 136
               +VI    L     +A         G L +K+GK  +AE  F ++LK      +   
Sbjct: 58  PDLTKVI---ALKMDFTAA-----RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK- 108

Query: 137 ENDGRVGMAMCSLAHAKCA-----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 191
           E + ++  A         A       +   A+    K L V        L        R 
Sbjct: 109 EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAEL--------RE 158

Query: 192 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 251
             AE     G  ++    L+           K           ++  Y +  +   +   
Sbjct: 159 LRAECFIKEGEPRKAISDLKAAS--------KLKSDNTEAFYKISTLYYQLGDHELSLSE 210

Query: 252 LRICLDIMTKTVGPDDQS---------ISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300
           +R CL +       D +              ++     L    R  +A       +  
Sbjct: 211 VRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 33/275 (12%), Positives = 79/275 (28%), Gaps = 44/275 (16%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
           L           +Y  ++    +++  +                  A+     G  +KA+
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILE-VCVWD-------AELRELRAECFIKEGEPRKAI 174

Query: 80  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 136
                   +         +D     + + +L+ + G    + S     LK+   + + + 
Sbjct: 175 SDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF- 225

Query: 137 ENDGRVGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 194
            +  +V     +   A     +G   +A   Y+  ++   + +         E     + 
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKER----IC 279

Query: 195 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 254
                  +  E   +  E L +         P  V  L + A +Y   + + EA +    
Sbjct: 280 HCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEA 331

Query: 255 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 289
             +        +DQ I      L      L + ++
Sbjct: 332 AQEHN-----ENDQQIRE---GLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 32/246 (13%), Positives = 70/246 (28%), Gaps = 43/246 (17%)

Query: 61  SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 120
             L + K L + G+   A+  +H  +   + +      D  +  +   ++F+  GK+  A
Sbjct: 5   KHLELGKKLLAAGQLADALSQFHAAV---DGD-----PDNYIAYYRRATVFLAMGKSKAA 56

Query: 121 ESVFSRILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD-- 175
               ++++ +   +T                  H     G  +EA + +KK L+      
Sbjct: 57  LPDLTKVIALKMDFTAAR-----------LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105

Query: 176 ---SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 232
                   L  +         A               L++ L +                
Sbjct: 106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELR 157

Query: 233 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 292
              A  + +     +A   L+    +       D+   +     +    Y L   + +  
Sbjct: 158 ELRAECFIKEGEPRKAISDLKAASKLK-----SDN---TEAFYKISTLYYQLGDHELSLS 209

Query: 293 LVLEAL 298
            V E L
Sbjct: 210 EVRECL 215

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 34/195 (17%)

Query: 104 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 163
           L +L ++  ++G   +A  ++ + L++              A  +LA      G  +EA+
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 164 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 223
             YK+A+R+     +         +   ++   L  +   Q   +     + I       
Sbjct: 64  MHYKEAIRI--SPTFA--------DAYSNMGNTLKEMQDVQGALQCYTRAIQI------- 106

Query: 224 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 283
            +P+F     NLA+ +  S N  EA    R  L +      PD         +L   L  
Sbjct: 107 -NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-----PDFPDA---YCNLAHCLQI 157

Query: 284 LNRDKEAEKLVLEAL 298
           +    + ++ + + +
Sbjct: 158 VCDWTDYDERMKKLV 172

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 26/157 (16%)

Query: 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 204
           ++ +LA+ K   GN EEAV LY+KAL V     +             +LA +L   G+ Q
Sbjct: 11  SLNNLANIKREQGNIEEAVRLYRKALEV--FPEFA--------AAHSNLASVLQQQGKLQ 60

Query: 205 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 264
           E     +E + I         P+F     N+  +    ++   A +     + I      
Sbjct: 61  EALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----N 107

Query: 265 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301
           P          +L           EA      AL ++
Sbjct: 108 PAFADA---HSNLASIHKDSGNIPEAIASYRTALKLK 141

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 24/173 (13%)

Query: 13  EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI 72
            P   A   ++ S+       +++++ Y+  I  +   +         +   M   L  +
Sbjct: 39  FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-ISPTF-------ADAYSNMGNTLKEM 90

Query: 73  GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 132
              + A++ Y R I I        +        +L S+    G   +A + +   LK+  
Sbjct: 91  QDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-- 140

Query: 133 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 185
                       A C+LAH      +  +  E  KK + ++ D    +   S+
Sbjct: 141 ------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSV 187

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 33/228 (14%), Positives = 77/228 (33%), Gaps = 34/228 (14%)

Query: 65  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 124
           +A +    G  ++AV +Y + + +          +      +L S+  ++GK  +A   +
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHY 66

Query: 125 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 184
              ++I              A  ++ +      + + A++ Y +A++ I  +   +    
Sbjct: 67  KEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ-INPAFADAH--- 114

Query: 185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 244
                  +LA +    G   E        L +         P F     NLA       +
Sbjct: 115 ------SNLASIHKDSGNIPEAIASYRTALKLK--------PDFPDAYCNLAHCLQIVCD 160

Query: 245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 292
           + + +  ++  + I+   +  +      P   +   L H  R   AE+
Sbjct: 161 WTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAER 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 31/234 (13%), Positives = 70/234 (29%), Gaps = 41/234 (17%)

Query: 65  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 124
           +       G  ++A     + + I                 +L  +F  E +   A+  +
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEY 94

Query: 125 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 184
            + L          D R    + +           EEA +   +A +             
Sbjct: 95  RKALAS--------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER----SR 142

Query: 185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 244
           + EN+ +   ++     +  + +E  E+ L +        + +  +  L +A    + + 
Sbjct: 143 VFENLGLVSLQM----KKPAQAKEYFEKSLRL--------NRNQPSVALEMADLLYKERE 190

Query: 245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 298
           +V A +   +         G      +   L LGI L  +  D++        L
Sbjct: 191 YVPARQYYDLFAQG-----GGQ----NARSLLLGIRLAKVFEDRDTAASYGLQL 235

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 18/154 (11%), Positives = 44/154 (28%), Gaps = 22/154 (14%)

Query: 23  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 82
           +  ++ T    + +   Y++ +   +SR  +        L      L    R ++A +  
Sbjct: 77  LAVVFQTEMEPKLADEEYRKALA-SDSRNARV-------LNNYGGFLYEQKRYEEAYQRL 128

Query: 83  HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 142
                   L              +LG + ++  K   A+  F + L++        +   
Sbjct: 129 LEASQDT-LYPERSRV-----FENLGLVSLQMKKPAQAKEYFEKSLRL--------NRNQ 174

Query: 143 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 176
                 +A           A + Y    +    +
Sbjct: 175 PSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 40/240 (16%), Positives = 67/240 (27%), Gaps = 47/240 (19%)

Query: 107 LGSLFIKEGKAVDAESVFSRILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 163
           LG  +++ G    A+    + L+I       +            +LA         + A 
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKALEIDPSSADAH-----------AALAVVFQTEMEPKLAD 91

Query: 164 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 223
           E Y+KAL      N   L+     N    L E      R +E  + L E    T      
Sbjct: 92  EEYRKALA-SDSRNARVLN-----NYGGFLYEQ----KRYEEAYQRLLEASQDTLY---- 137

Query: 224 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 283
             P       NL     + K   +A+      L +       +  S     L +   LY 
Sbjct: 138 --PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-----NRNQPS---VALEMADLLYK 187

Query: 284 LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 343
                 A        Y      G  +     +L   + +     + D        ++ R+
Sbjct: 188 EREYVPA-----RQYYDLFAQGGGQNA---RSLLLGIRLAKVFEDRD-TAASYGLQLKRL 238

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 12/127 (9%), Positives = 38/127 (29%), Gaps = 4/127 (3%)

Query: 201 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 260
            + ++   + +  +    +     +   +  L     +        EA       ++   
Sbjct: 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR 360

Query: 261 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEAL---- 316
                        ++ +G    H     +A K +  A  I  +  G++   + + +    
Sbjct: 361 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE 420

Query: 317 DCLVSIQ 323
           +C  +I+
Sbjct: 421 ECDANIR 427

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 2/112 (1%)

Query: 155 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 214
           A+   E+ + + +  +    +S  +   +     +     +    +G  +E        +
Sbjct: 299 AHWKWEQVLAMCQAIIS--SNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356

Query: 215 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 266
                +    HP     ++ +         F +A + LR+  DIM  T G +
Sbjct: 357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 43.7 bits (102), Expect = 8e-05
 Identities = 10/79 (12%), Positives = 27/79 (34%)

Query: 19  ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 78
           +L         L   E+++    R +      +  +  +    ++ + K+    G   +A
Sbjct: 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQA 390

Query: 79  VEIYHRVITILELNRGTES 97
           ++       I+ +  G E 
Sbjct: 391 MKNLRLAFDIMRVTHGREH 409

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 14/116 (12%), Positives = 42/116 (36%)

Query: 59  VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV 118
           V   L   + L +  + ++ + +   +I+         +   +  L       I  G   
Sbjct: 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLE 346

Query: 119 DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174
           +A    +R ++ Y   +  +    G+ +  +   +   G   +A++  + A  +++
Sbjct: 347 EALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 23/146 (15%), Positives = 40/146 (27%), Gaps = 26/146 (17%)

Query: 156 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 215
             +    +   + A+R                   + LA+    +G    G   ++  L 
Sbjct: 2   TADGPRELLQLRAAVRH--RPQDFVA--------WLMLADAELGMGDTTAGEMAVQRGLA 51

Query: 216 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 275
           +        HP     +  L       +   EA  LL+   D       P+   I    L
Sbjct: 52  L--------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-----APEHPGI---AL 95

Query: 276 HLGITLYHLNRDKEAEKLVLEALYIR 301
            LG  L    + + A      A  + 
Sbjct: 96  WLGHALEDAGQAEAAAAAYTRAHQLL 121

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 25/205 (12%), Positives = 42/205 (20%), Gaps = 37/205 (18%)

Query: 73  GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 132
               + +      +               +    L    +  G     E    R L +  
Sbjct: 3   ADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-- 52

Query: 133 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 192
                       A+  L   +       EA  L ++A     +         I       
Sbjct: 53  ------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE------HPGIALW---- 96

Query: 193 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 252
           L   L   G+ +           +       E P     LLN        +        +
Sbjct: 97  LGHALEDAGQAEAAAAAYTRAHQLLP-----EEPYITAQLLNWRRRLCDWRALDVLSAQV 151

Query: 253 RICLDIMTKTVGPDDQSISFPMLHL 277
           R  +      V P      F  L  
Sbjct: 152 RAAVAQGVGAVEP------FAFLSE 170

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 20/186 (10%), Positives = 42/186 (22%), Gaps = 34/186 (18%)

Query: 115 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174
                        ++           +  +A   LA A+   G+        ++ L +  
Sbjct: 3   ADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-- 52

Query: 175 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 234
              +              L  +     R  E   LL++             P      L 
Sbjct: 53  HPGHP--------EAVARLGRVRWTQQRHAEAAVLLQQASDA--------APEHPGIALW 96

Query: 235 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 294
           L  +   +     A         ++     P++  I      L      L   +  + L 
Sbjct: 97  LGHALEDAGQAEAAAAAYTRAHQLL-----PEEPYI---TAQLLNWRRRLCDWRALDVLS 148

Query: 295 LEALYI 300
            +    
Sbjct: 149 AQVRAA 154

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 16/110 (14%)

Query: 62  LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 121
            L +A     +G          R + +               +  LG +   + +  +A 
Sbjct: 26  WLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRVRWTQQRHAEAA 77

Query: 122 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171
            +  +                      L HA    G AE A   Y +A +
Sbjct: 78  VLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 35/289 (12%), Positives = 82/289 (28%), Gaps = 51/289 (17%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
           L + G  +    N   + ++ Q  IN L             S + +A  L     +++  
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESIN-LHPTP--------NSYIFLALTLADKENSQEFF 296

Query: 80  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 139
           + + + +   +LN   E        +  G ++       +A+  F +   +  +      
Sbjct: 297 KFFQKAV---DLNP--EYPPT---YYHRGQMYFILQDYKNAKEDFQKAQSLNPENV---- 344

Query: 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 199
                    LA      G   E+   + +     K           +       AE+L  
Sbjct: 345 ----YPYIQLACLLYKQGKFTESEAFFNETKL--KFPTL-----PEVPTFF---AEILTD 390

Query: 200 VGRGQEGRELLEECLLITEKYKG--------KEHPSFVTHLLNLAASYSRSKNFVEAERL 251
            G      +  +    + E  +             + +    +   +    + F  A +L
Sbjct: 391 RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450

Query: 252 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300
           L    ++        D       + L      + +  EA +L  ++  +
Sbjct: 451 LTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 41/306 (13%), Positives = 88/306 (28%), Gaps = 53/306 (17%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA------------- 66
           LL   S   +L N+  +M     +    +        +L  +L   A             
Sbjct: 96  LLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEG 155

Query: 67  ---KVLGSIGRAKKAVEIYHRVITILELNRGTE---------SADLVLPLFSLGSLFIKE 114
              +VL S         I+   + +  +N  +           A   L   +     +  
Sbjct: 156 RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAN 215

Query: 115 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 174
                +  ++  +L   T           +A+C          N  +A  L ++++ +  
Sbjct: 216 DLLTKSTDMYHSLLSANTVD-DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-- 272

Query: 175 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 234
                S          I LA  L      QE  +  ++ + +        +P +     +
Sbjct: 273 HPTPNSY---------IFLALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYH 315

Query: 235 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 294
               Y   +++  A+   +    +      P++    +P + L   LY   +  E+E   
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSL-----NPEN---VYPYIQLACLLYKQGKFTESEAFF 367

Query: 295 LEALYI 300
            E    
Sbjct: 368 NETKLK 373

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 46/309 (14%), Positives = 91/309 (29%), Gaps = 50/309 (16%)

Query: 8   SLKDDEPLLDAILLH-MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 66
            L   +    A+ L   G+ + T +N+ +++  YQ  I  L+                ++
Sbjct: 15  GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE-LDPNE-------PVFYSNIS 66

Query: 67  KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 126
               S G  +K +E   + +   E+       D    L    S     G   DA    S 
Sbjct: 67  ACYISTGDLEKVIEFTTKAL---EIK-----PDHSKALLRRASANESLGNFTDAMFDLSV 118

Query: 127 I-----------------------LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 163
           +                       +K+  +   +++GR    + S        G  +  +
Sbjct: 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178

Query: 164 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 223
           E+         D+ Y  L D++           L       +  ++    L         
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDP 237

Query: 224 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 283
              +    L      +    N ++A+ LL+  +++      P   S       L +TL  
Sbjct: 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-----HPTPNSYI----FLALTLAD 288

Query: 284 LNRDKEAEK 292
               +E  K
Sbjct: 289 KENSQEFFK 297

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 31/206 (15%), Positives = 64/206 (31%), Gaps = 34/206 (16%)

Query: 19  ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 78
              H G MY  L++Y+ +   +Q+  + L           V   + +A +L   G+  ++
Sbjct: 312 TYYHRGQMYFILQDYKNAKEDFQKAQS-LNPEN-------VYPYIQLACLLYKQGKFTES 363

Query: 79  VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVY 135
              ++                L         +    G    A   +    ++     K++
Sbjct: 364 EAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415

Query: 136 -----GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 190
                      +     S    +        A++L  KA  +  D           E  +
Sbjct: 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRS--------EQAK 465

Query: 191 IDLAELLHIVGRGQEGRELLEECLLI 216
           I LA+L   + +  E  EL E+  ++
Sbjct: 466 IGLAQLKLQMEKIDEAIELFEDSAIL 491

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 43/290 (14%)

Query: 13  EPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN-------VLESRYGKTSILLVTSLLGM 65
           +    A  L  G +       +++   +++V+          E++        +  L   
Sbjct: 90  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149

Query: 66  AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS 125
           A      G    A+    +++ +                      FIKEG+   A S   
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLK 201

Query: 126 RILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--YMS 180
              K+    T+ +             ++      G+ E ++   ++ L++ +D    +  
Sbjct: 202 AASKLKNDNTEAF-----------YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 250

Query: 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 240
                  N  I+ AE L   GR  +     E  +    K +       V     +   +S
Sbjct: 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVM----KTEPSIAEYTVRSKERICHCFS 306

Query: 241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 290
           + +  VEA R+    L +      PD+      +              EA
Sbjct: 307 KDEKPVEAIRVCSEVLQME-----PDN---VNALKDRAEAYLIEEMYDEA 348

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 33/276 (11%), Positives = 79/276 (28%), Gaps = 44/276 (15%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
           L           +Y  ++    +++  +                  A+     G  +KA+
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILE-VCVWD-------AELRELRAECFIKEGEPRKAI 197

Query: 80  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 136
                   +          D     + + +L+ + G    + S     LK+   + + + 
Sbjct: 198 SDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF- 248

Query: 137 ENDGRVGMAMCSLAHAKCA--NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 194
            +  +V      +  A+    +G   +A   Y+  ++   + +         E     + 
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKER----IC 302

Query: 195 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 254
                  +  E   +  E L +         P  V  L + A +Y   + + EA +    
Sbjct: 303 HCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYET 354

Query: 255 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 290
             +        +DQ I      L      L + ++ 
Sbjct: 355 AQEHN-----ENDQQIRE---GLEKAQRLLKQSQKR 382

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 35/250 (14%), Positives = 74/250 (29%), Gaps = 43/250 (17%)

Query: 59  VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV 118
           V   L + K L + G+   A+  +H  +   + +      D  +  +   ++F+  GK+ 
Sbjct: 26  VEKHLELGKKLLAAGQLADALSQFHAAV---DGD-----PDNYIAYYRRATVFLAMGKSK 77

Query: 119 DAESVFSRILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 175
            A    ++++++   +T                  H     G  +EA + +KK L+    
Sbjct: 78  AALPDLTKVIQLKMDFTAAR-----------LQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126

Query: 176 S-----NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT 230
                     L  S         A      G        L++ L +              
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--------VWDAE 178

Query: 231 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 290
                A  + +     +A   L+    +       D+   +     +    Y L   + +
Sbjct: 179 LRELRAECFIKEGEPRKAISDLKAASKLK-----NDN---TEAFYKISTLYYQLGDHELS 230

Query: 291 EKLVLEALYI 300
              V E L +
Sbjct: 231 LSEVRECLKL 240

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 16/159 (10%), Positives = 49/159 (30%), Gaps = 21/159 (13%)

Query: 23  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 82
           +GS +    N+  ++   ++ I    +               + +         KA   +
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIR-PTTTD-------PKVFYELGQAYYYNKEYVKADSSF 165

Query: 83  HRVITILELNRGTESADLVLPLFSLGSLFIK---EGKAVDAESVFSRILKIYTKVYGEND 139
            +V+ +          ++ +              + K   A+  + +++++      +  
Sbjct: 166 VKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217

Query: 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 178
             +  A   +A+    N +  +A   +K  L +  D   
Sbjct: 218 DELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTN 254

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 27/166 (16%)

Query: 23  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 82
            G +         ++  YQ  ++  ++         +     +     + G    A++  
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAVD-RDTTR-------LDMYGQIGSYFYNKGNFPLAIQYM 131

Query: 83  HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 139
            + I                  + LG  +    + V A+S F ++L++       Y    
Sbjct: 132 EKQI---RPTTTDPKV-----FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGY-LWR 182

Query: 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 185
            R   A          +     A   Y+K + V         D+ I
Sbjct: 183 ARANAAQDP-------DTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 24/256 (9%), Positives = 63/256 (24%), Gaps = 48/256 (18%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
                       NY +++ V+ ++    +                 A     + +   A 
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEA-KKYNS-------PYIYNRRAVCYYELAKYDLAQ 57

Query: 80  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 139
           +      + +   +   +          G + +K+G+   A   +   +   T       
Sbjct: 58  KDIETYFSKVNATKAKSAD-----FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL---- 108

Query: 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--YMSLDDSIMENMRIDLA--- 194
                    +       GN   A++  +K +R        +  L  +   N     A   
Sbjct: 109 ----DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164

Query: 195 ----------------------ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 232
                                        +    +   E+ + +      K     +   
Sbjct: 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN 224

Query: 233 LNLAASYSRSKNFVEA 248
             +A  Y+ +++ V+A
Sbjct: 225 EYIAYYYTINRDKVKA 240

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 48.6 bits (116), Expect = 7e-07
 Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 23/164 (14%)

Query: 8   SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 67
           ++  +  +   +   +   Y    NY+K+ L Y+ ++              V  L   A+
Sbjct: 45  NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-KAPNN-------VDCLEACAE 96

Query: 68  VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 127
           +    G+ K A+ +Y +++   +L     +A        LG+ +    +    +      
Sbjct: 97  MQVCRGQEKDALRMYEKIL---QLEADNLAA-----NIFLGNYYYLTAEQEKKK------ 142

Query: 128 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171
           L+   K    +  ++  A      +K      E+A    +K + 
Sbjct: 143 LETDYKKL-SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 22/161 (13%), Positives = 50/161 (31%), Gaps = 25/161 (15%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINV--------LESRYGKTSILLVTSLLGMAKVLGS 71
           +L   S         +++  +++ I +          +   K S +       +A     
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 72  IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 131
                KA   Y  ++   +        + V  L +   + +  G+  DA  ++ +IL++ 
Sbjct: 67  NRNYDKAYLFYKELL---QKAP-----NNVDCLEACAEMQVCRGQEKDALRMYEKILQL- 117

Query: 132 TKVYGENDGRVGMAMCSLAHAKCANGNAE-EAVELYKKALR 171
                  +     A   L +        E + +E   K L 
Sbjct: 118 -------EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 22/206 (10%), Positives = 61/206 (29%), Gaps = 35/206 (16%)

Query: 62  LLGMAKVLGSIGRAKKAVEIYHRVITI------LELNRGTESADLVLP--LFSLGSLFIK 113
           +L         G+  +AV  + + I +      +      +    +       L   + K
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 114 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 173
                 A   +  +L+                + + A  +   G  ++A+ +Y+K L++ 
Sbjct: 67  NRNYDKAYLFYKELLQKAPNNVD--------CLEACAEMQVCRGQEKDALRMYEKILQL- 117

Query: 174 KDSNYMSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEKYKGKEHPSFVTHL 232
            +++ ++          I L    ++   + ++  E   + L                  
Sbjct: 118 -EADNLAA--------NIFLGNYYYLTAEQEKKKLETDYKKLSS--------PTKMQYAR 160

Query: 233 LNLAASYSRSKNFVEAERLLRICLDI 258
                S   +  + +A   L+  +  
Sbjct: 161 YRDGLSKLFTTRYEKARNSLQKVILR 186

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 23/163 (14%)

Query: 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDS----NYMSLDDSIMENMRI--DLAELLH 198
            M     A    G   +AV  +++ + +  D      + ++D +   + ++  +LA    
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65

Query: 199 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 258
                 +     +E L        ++ P+ V  L   A          +A R+    L +
Sbjct: 66  KNRNYDKAYLFYKELL--------QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117

Query: 259 MTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYI 300
                  D+ +     + LG   Y    ++K+  +   + L  
Sbjct: 118 -----EADNLAA---NIFLGNYYYLTAEQEKKKLETDYKKLSS 152

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 39/314 (12%), Positives = 88/314 (28%), Gaps = 66/314 (21%)

Query: 22  HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 81
            +G   +  E    +++        L+ +        +     +A    +   A  A+  
Sbjct: 60  SLGLTQAENEKDGLAIIALNHARM-LDPKD-------IAVHAALAVSHTNEHNANAALAS 111

Query: 82  YHRVITI------LELNRGTESADL-VLPLFSLGSLFIKEGKAVDAESVFSRILKI---Y 131
               +        L         D+  L + S    F    +  +  ++    L++    
Sbjct: 112 LRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171

Query: 132 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 191
            +++            SL      + N + A    ++A+  ++  +    +      +  
Sbjct: 172 AQLH-----------ASLGVLYNLSNNYDSAAANLRRAVE-LRPDDAQLWN-----KLGA 214

Query: 192 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 251
            LA       R QE  +     L I        +P +V  + N+A SYS    +  A + 
Sbjct: 215 TLANG----NRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQ 262

Query: 252 LRICLDIMTKTVGPDDQSISFPMLH---------LGITLYHLNRDKEAEKLVLEALYIRE 302
           L   + +          + +                + L  +NR         E  Y + 
Sbjct: 263 LVRAIYMQ-----VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV-----ELTYAQN 312

Query: 303 IAFGKDSLPVGEAL 316
           +        +   L
Sbjct: 313 VEPFAKEFGLQSML 326

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 42/235 (17%), Positives = 70/235 (29%), Gaps = 41/235 (17%)

Query: 65  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 124
               +  +    +A   +  V           + +      SLG    +  K   A    
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIAL 78

Query: 125 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD-----SNYM 179
           +    +        D +      +LA +     NA  A+   +  L          S  +
Sbjct: 79  NHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130

Query: 180 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 239
             D  I +                +E R LL   L +        +P+      +L   Y
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--------NPNDAQLHASLGVLY 182

Query: 240 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEK 292
           + S N+  A   LR  +++      PDD       L   LG TL + NR +EA  
Sbjct: 183 NLSNNYDSAAANLRRAVELR-----PDD-----AQLWNKLGATLANGNRPQEALD 227

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 44/295 (14%), Positives = 81/295 (27%), Gaps = 48/295 (16%)

Query: 11  DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 70
           ++           G       +   ++L  +  I   +            +   +     
Sbjct: 59  ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAIL-QDPGD-------AEAWQFLGITQA 110

Query: 71  SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 130
                + A+    R +   EL       + +  L +L   +       DA       +K 
Sbjct: 111 ENENEQAAIVALQRCL---ELQ-----PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162

Query: 131 ---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 187
              Y  +  +N          ++ +   +   E   ELY +A       N   +D  +  
Sbjct: 163 NPKYKYLV-KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ----NGDMIDPDLQT 217

Query: 188 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE 247
                L  L H+ G      +     L +         P   +    L A+ +      E
Sbjct: 218 G----LGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEE 265

Query: 248 AERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYI 300
           A       L+I      P      F      LGI+  +L   +EA    L AL +
Sbjct: 266 AVEAYTRALEIQ-----PG-----FIRSRYNLGISCINLGAYREAVSNFLTALSL 310

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 38/242 (15%), Positives = 65/242 (26%), Gaps = 40/242 (16%)

Query: 65  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 124
                   G     +      I     + G   A        LG    +      A    
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAI---LQDPGDAEA-----WQFLGITQAENENEQAAIVAL 122

Query: 125 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN---YMSL 181
            R L++              A+ +LA +     + ++A E  K  ++           + 
Sbjct: 123 QRCLEL--------QPNNLKALMALAVSYTNTSHQQDACEALKNWIK-QNPKYKYLVKNK 173

Query: 182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 241
             S     R+  +         +  +EL  E           +          L   +  
Sbjct: 174 KGSPGLTRRMSKS--PVDSSVLEGVKELYLEAAHQNGDMIDPD------LQTGLGVLFHL 225

Query: 242 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALY 299
           S  F  A       L +      P+D       L   LG TL + +R +EA +    AL 
Sbjct: 226 SGEFNRAIDAFNAALTVR-----PED-----YSLWNRLGATLANGDRSEEAVEAYTRALE 275

Query: 300 IR 301
           I+
Sbjct: 276 IQ 277

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 47.3 bits (112), Expect = 4e-06
 Identities = 24/184 (13%), Positives = 55/184 (29%), Gaps = 12/184 (6%)

Query: 77  KAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 135
            A + + +      +     E+ +           F   G +V+A       ++I+T   
Sbjct: 55  LAGDSFLKAADYQKKAGNEDEAGNT---YVEAYKCFKSGGNSVNAVDSLENAIQIFTH-- 109

Query: 136 GENDGRVGMAMCSLA-HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 194
                R       L    +    +  +A++ Y+ A         ++L +          A
Sbjct: 110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK----CA 165

Query: 195 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 254
           +L  + G+  E  ++  + +            S   + L        + + V A R L+ 
Sbjct: 166 DLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224

Query: 255 CLDI 258
               
Sbjct: 225 GQSE 228

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 36/290 (12%), Positives = 79/290 (27%), Gaps = 60/290 (20%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
           L H G       +   +    ++ I  L  R          S + MA ++     + +  
Sbjct: 240 LEHTGIFKFLKNDPLGAHEDIKKAIE-LFPRV--------NSYIYMALIMADRNDSTEYY 290

Query: 80  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 139
             + + +   +L+    ++ +    +  G +         A   F +  ++        D
Sbjct: 291 NYFDKAL---KLDS--NNSSV---YYHRGQMNFILQNYDQAGKDFDKAKEL--------D 334

Query: 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 199
                    LA         ++   L+ +A R  K              +    AE+L  
Sbjct: 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEA--------PEVPNFFAEILTD 384

Query: 200 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS---------KNFVEAER 250
                +  +  +  + +                + +A    ++         +NF+EA  
Sbjct: 385 KNDFDKALKQYDLAIEL--------ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436

Query: 251 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300
           LL     +        D       + L           EA  L  E+  +
Sbjct: 437 LLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 18/163 (11%), Positives = 47/163 (28%), Gaps = 23/163 (14%)

Query: 19  ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 78
           +  H G M   L+NY+++   + +    L+          +   + +A +     +    
Sbjct: 306 VYYHRGQMNFILQNYDQAGKDFDKAKE-LDPEN-------IFPYIQLACLAYRENKFDDC 357

Query: 79  VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVY 135
             ++                +          +   +     A   +   +++      +Y
Sbjct: 358 ETLFSEAKRK--------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409

Query: 136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 178
                 + +   +L        N  EA  L +KA ++  D   
Sbjct: 410 V-GIAPL-VGKATLLTRNPTVENFIEATNLLEKASKL--DPRS 448

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 35/287 (12%), Positives = 81/287 (28%), Gaps = 38/287 (13%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 79
           +L        +   ++                 + S           + L S+       
Sbjct: 113 MLERNLNKQAMSKLKEKFGDIDTATATPT----ELSTQPAKERKDKQENLPSVTSMASFF 168

Query: 80  EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV----- 134
            I+   +T    +   E AD  L                 A+  F++  +++ +      
Sbjct: 169 GIFKPELTFANYDESNE-ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227

Query: 135 -YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 193
              +   ++ +++      K    +   A E  KKA+ +       S          I +
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--FPRVNSY---------IYM 276

Query: 194 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 253
           A ++       E     ++ L +          +  +   +        +N+ +A +   
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFD 328

Query: 254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300
              ++      P++    FP + L    Y  N+  + E L  EA   
Sbjct: 329 KAKEL-----DPEN---IFPYIQLACLAYRENKFDDCETLFSEAKRK 367

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 222 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 281
           G +        L L +++     + +AE +L   +        P+ Q++    +   + L
Sbjct: 20  GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-----PNHQAL---RVFYAMVL 71

Query: 282 YHLNRDKEAEKLVLEAL 298
           Y+L R ++  +L+L+ +
Sbjct: 72  YNLGRYEQGVELLLKII 88

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 70  GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 129
           G +G   +AV  Y + I       G +  DL      LGS F   G+   AE+V +  +K
Sbjct: 1   GVLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK 55

Query: 130 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 170
            +                  A      G  E+ VEL  K +
Sbjct: 56  QFPNHQA--------LRVFYAMVLYNLGRYEQGVELLLKII 88

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 33/239 (13%), Positives = 66/239 (27%), Gaps = 43/239 (17%)

Query: 61  SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 120
           ++   A+ L S  R    V    R     E++R  +  +    L    S++  +     A
Sbjct: 67  AVRMFAEYLASHSRRDAIVAELDR-----EMSRSVDVTNTTF-LLMAASIYFYDQNPDAA 120

Query: 121 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 180
                +   +               M             + A +  KK            
Sbjct: 121 LRTLHQGDSLE-------------CMAMTVQILLKLDRLDLARKELKKMQDQ-------- 159

Query: 181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 240
            +D+ +  +      L     + Q+   + +E           +    +  L   AA + 
Sbjct: 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA--------DKCSPTLLLLNGQAACHM 211

Query: 241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 299
               +  AE +L+  LD                +++L +   HL +  E     L  L 
Sbjct: 212 AQGRWEAAEGVLQEALDK-----DSGHPET---LINLVVLSQHLGKPPEVTNRYLSQLK 262

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 46/301 (15%), Positives = 87/301 (28%), Gaps = 54/301 (17%)

Query: 22  HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 81
           ++G+  +  E    ++   +R +  L+           T+L+ +A    +    ++A EI
Sbjct: 103 YLGTTQAENEQELLAISALRRCLE-LKPDN-------QTALMALAVSFTNESLQRQACEI 154

Query: 82  YHRVITI--------LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 133
               +               G   A L      LGSL   +   ++ + +F   +++   
Sbjct: 155 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPT 213

Query: 134 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 193
              + D       C L      +G  ++AV+ +  AL V    N   L       +   L
Sbjct: 214 -SIDPD-----VQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLL----WNKLGATL 261

Query: 194 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 253
           A       + +E        L +         P ++    NL  S        EA     
Sbjct: 262 ANG----NQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFL 309

Query: 254 ICLDIMTKTVGPDDQSISFPMLH--------LGITLYHLNRDKEAEKLVLEALYIREIAF 305
             L++         +                L + L  L +           L      F
Sbjct: 310 EALNMQ-----RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF 364

Query: 306 G 306
           G
Sbjct: 365 G 365

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 34/231 (14%), Positives = 69/231 (29%), Gaps = 35/231 (15%)

Query: 78  AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 137
               Y +     E N   +        F  G   ++EG   +A  +F   ++   K + E
Sbjct: 45  TSATYDKGYQFEEENPLRDHPQP----FEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HME 99

Query: 138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 197
                  A   L   +  N     A+   ++ L +    +      + +  + +      
Sbjct: 100 -------AWQYLGTTQAENEQELLAISALRRCLEL--KPDN----QTALMALAVSFTNE- 145

Query: 198 HIVGRGQEGRELLEECLLITEKYK-------GKEHPSFVTHLLNLAASYSRSKNFVEAER 250
                 ++  E+L + L  T  Y             + +     +  S      F+E + 
Sbjct: 146 ---SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKE 202

Query: 251 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301
           L    + +   ++ PD Q        LG+         +A      AL +R
Sbjct: 203 LFLAAVRLDPTSIDPDVQCG------LGVLFNLSGEYDKAVDCFTAALSVR 247

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 33/232 (14%)

Query: 65  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 124
                   G    AV ++   +              +     LG+   +  + + A S  
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISAL 121

Query: 125 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 184
            R L++              A+ +LA +        +A E+ +  LR    +    +  +
Sbjct: 122 RRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLR-YTPAYAHLVTPA 172

Query: 185 IMENMRIDLAELLHIVGRGQEGRELLE--ECLLITEKYKGKEHPSFVTHLLNLAASYSRS 242
                   L     I+G        LE  E  L   +         V     L   ++ S
Sbjct: 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV--QCGLGVLFNLS 230

Query: 243 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEK 292
             + +A       L +      P+D      +L   LG TL + N+ +EA  
Sbjct: 231 GEYDKAVDCFTAALSVR-----PND-----YLLWNKLGATLANGNQSEEAVA 272

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 22/162 (13%), Positives = 55/162 (33%), Gaps = 27/162 (16%)

Query: 20  LLHMGSMYSTLENYEKSMLVYQRVI-------NVLESRYGKTSILLVTSLLGMAKVLGSI 72
           L+ +   ++      ++  + +  +       +++           +     +   L S 
Sbjct: 135 LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194

Query: 73  GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI-- 130
               +  E++   +    L+  +   D+      LG LF   G+   A   F+  L +  
Sbjct: 195 SLFLEVKELFLAAV---RLDPTSIDPDV---QCGLGVLFNLSGEYDKAVDCFTAALSVRP 248

Query: 131 -YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171
               ++     ++G  + +          +EEAV  Y++AL 
Sbjct: 249 NDYLLWN----KLGATLANG-------NQSEEAVAAYRRALE 279

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 32/159 (20%)

Query: 23  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 82
            G++Y   E Y+++  ++++ +                    +  VL  + + K A+   
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKALR-AGMEN-------GDLFYMLGTVLVKLEQPKLALPYL 148

Query: 83  HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 139
            R +   ELN      +     F  G     EG   +A S F+ + +    +   +    
Sbjct: 149 QRAV---ELN-----ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF---- 196

Query: 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 178
                   +         N E+A+E+  KA+ +    ++
Sbjct: 197 -------YNAGVTYAYKENREKALEMLDKAIDI--QPDH 226

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 15/151 (9%), Positives = 44/151 (29%), Gaps = 24/151 (15%)

Query: 22  HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 81
             G     LE  ++ + V  +    L  +        V ++   +    ++   ++ + +
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHG-LTPQQ-------VVAIASNSGGKQALETVQRLLPV 298

Query: 82  YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 141
             +   +        +   V+ + S G              V  +   +  +        
Sbjct: 299 LCQAHGL--------TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV------ 344

Query: 142 VGMAMCSLAHAKCANGNAEEAVELYKKALRV 172
             +A+ S    K A    +  + +  +A  +
Sbjct: 345 --VAIASHDGGKQALETVQRLLPVLCQAHGL 373

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 23/160 (14%)

Query: 23  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL-GSIGRAKKAVEI 81
              +Y  L+  +K+   +++ ++ ++    +               L G + R  +++  
Sbjct: 48  RAEIYQYLKVNDKAQESFRQALS-IKPDSAEI-------NNNYGWFLCGRLNRPAESMAY 99

Query: 82  YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 141
           + + +           A       + G    K+G+   AE+   R L            +
Sbjct: 100 FDKALADP-TYPTPYIA-----NLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQ 145

Query: 142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 181
              A   LA  K   G   +A   +KK    ++      L
Sbjct: 146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDL 185

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 25/162 (15%), Positives = 49/162 (30%), Gaps = 31/162 (19%)

Query: 23  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 82
           +G  Y      ++   + +R +              V     +      + +   AV + 
Sbjct: 48  LGIAYVKTGAVDRGTELLERSLA-DAPDN-------VKVATVLGLTYVQVQKYDLAVPLL 99

Query: 83  HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 139
            +V           +       F LG      G+  +A   F   L +     KV+    
Sbjct: 100 IKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVH---- 147

Query: 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 181
                   ++A +    G  EEA+  +KKA   + +   + L
Sbjct: 148 -------RAIAFSYEQMGRHEEALPHFKKANE-LDEGASVEL 181

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 30/152 (19%)

Query: 23  MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 82
            G  ++    Y +++++ ++V +  ++         V   L +       G   +  E+ 
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYD-ADAFD-------VDVALHLGIAYVKTGAVDRGTELL 65

Query: 83  HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 139
            R +          + D V     LG  +++  K   A  +  ++ +       V     
Sbjct: 66  ERSLAD--------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVR---- 113

Query: 140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171
                    L  A    G  +EA++ +K AL 
Sbjct: 114 -------FRLGVALDNLGRFDEAIDSFKIALG 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 21/142 (14%)

Query: 155 ANGNAEEAVELYKKALRVIKDS----NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 210
            + N  E   +    +  I       +  ++ D +M+++    A   +  GR +E     
Sbjct: 1   GSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDI-YSYAYDFYNKGRIEEAEVFF 59

Query: 211 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 270
               +             V +++ LAA Y   + F +A  L  +   +     G +D   
Sbjct: 60  RFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GKND--- 103

Query: 271 SFPMLHLGITLYHLNRDKEAEK 292
             P+ H G     L    +A++
Sbjct: 104 YTPVFHTGQCQLRLKAPLKAKE 125

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 40.1 bits (93), Expect = 7e-04
 Identities = 21/184 (11%), Positives = 66/184 (35%), Gaps = 6/184 (3%)

Query: 7   DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 66
           +    +         ++ +      +YE  +L  ++++N   +       L +     +A
Sbjct: 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI--ENAIA 162

Query: 67  KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 126
            +    G  KK ++++ +++  LE     E  D+ +  ++       + +  ++    ++
Sbjct: 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV-RYNHAKALYLDSRYEESLYQVNK 221

Query: 127 ILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE-LYKKALRVIKDSNYMSLDDSI 185
            ++I  ++   +   +G                E  +E  YKKA          +  +++
Sbjct: 222 AIEISCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEAL 279

Query: 186 MENM 189
           +  +
Sbjct: 280 VNKI 283

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 16/116 (13%)

Query: 57  LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK 116
           +   + +     +  +    +A   +  V    +     E A       SLG    +  K
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVC---QKEPEREEA-----WRSLGLTQAENEK 66

Query: 117 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 172
              A    +    +        D +      +LA +     NA  A+   +  L  
Sbjct: 67  DGLAIIALNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	395
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	100.0
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	100.0
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	100.0
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	100.0
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.98
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.97
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.97
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.97
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.97
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.96
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.96
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.96
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.96
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.96
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.96
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.96
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.96
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.96
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.95
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.95
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.95
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.94
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.94
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.94
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.94
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.94
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.93
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.93
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.93
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.93
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.92
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.91
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.9
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.9
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.9
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.9
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.89
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.89
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.89
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.88
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.88
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.88
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.88
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.88
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.87
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.87
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.87
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.87
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.87
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.87
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.87
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.87
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.87
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.87
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.87
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.87
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.86
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.83
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.83
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.82
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.82
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.82
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.81
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.81
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.81
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.81
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.8
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.8
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.79
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.79
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.79
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.79
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.78
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.77
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.77
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.77
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.76
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.76
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.75
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.75
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.75
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.75
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.75
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.75
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.74
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.74
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.74
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.73
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.73
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.7
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.66
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.65
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.65
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.64
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.64
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.63
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.63
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.63
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.63
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.63
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.62
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.62
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.61
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.61
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.6
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.6
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.6
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.6
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.58
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.58
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.55
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.55
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.53
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.53
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.53
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.52
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.52
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.52
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.52
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.5
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.49
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.48
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.48
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.48
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.46
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.46
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.45
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.45
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.45
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.45
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.44
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.44
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.43
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.42
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.42
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.42
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.41
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.41
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.41
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.4
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.39
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.39
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.39
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.37
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.37
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.37
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.37
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.37
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.37
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.36
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.34
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.34
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.34
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.34
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.32
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.32
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.31
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.3
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.3
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.3
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.29
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.28
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.28
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.27
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.27
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.27
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.23
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.2
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.2
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.19
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.14
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.12
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.11
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.03
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.02
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.98
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.97
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.93
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.92
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.88
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.86
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.85
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.84
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.83
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.81
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.7
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.67
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.65
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.64
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.56
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.55
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.53
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.5
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.46
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.46
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.27
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.24
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.22
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.2
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.2
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.18
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.17
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.09
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.08
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.07
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.79
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.71
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.44
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.42
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.34
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.86
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.78
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.65
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.49
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.46
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.4
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.39
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.27
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.05
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.8
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.68
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.62
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.54
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	95.26
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.09
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.9
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.53
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.5
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.48
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.32
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.65
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.44
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	93.13
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	92.99
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.33
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	92.13
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.0
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	90.54
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	88.78
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	88.59
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	88.27
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	85.83
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	85.46
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	84.89
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	84.46
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	82.66
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	82.12

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=100.00  E-value=9.1e-34  Score=244.93  Aligned_cols=349  Identities=17%  Similarity=0.140  Sum_probs=296.1

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   95 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   95 (395)
                      .+..+..+|..+...|++++|+.+|++++...    +.+.+..+.++..+|.++...|++++|+.++++++.+.....  
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--   81 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--   81 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--
Confidence            45567899999999999999999999999872    233445678899999999999999999999999999987753  


Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC-----------------
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN-----------------  158 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------  158 (395)
                      +.+....++..+|.++...|++++|+.++++++.+.+...  +.+....++..+|.++...|+                 
T Consensus        82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a  159 (406)
T 3sf4_A           82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV  159 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence            5677888999999999999999999999999999988752  445677899999999999999                 


Q ss_pred             ---HHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHH
Q 016114          159 ---AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL  235 (395)
Q Consensus       159 ---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  235 (395)
                         +++|+.++++++.+....    ++.+....++.++|.++...|++++|+.++++++.+.....  +.+....++.++
T Consensus       160 ~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l  233 (406)
T 3sf4_A          160 RDALQAAVDFYEENLSLVTAL----GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNL  233 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHH
Confidence               999999999999998764    46677788899999999999999999999999999987643  445667789999


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 016114          236 AASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEA  315 (395)
Q Consensus       236 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  315 (395)
                      |.++...|++++|+.++++++.+....  .+.+....++..+|.++...|++++|..++++++.+....  .+.+....+
T Consensus       234 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~  309 (406)
T 3sf4_A          234 GNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGRA  309 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHHH
Confidence            999999999999999999999987665  3445567889999999999999999999999999988765  345667788


Q ss_pred             HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhc-hhhHHHHHH
Q 016114          316 LDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF-PLKKRLSNL  385 (395)
Q Consensus       316 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~  385 (395)
                      +..+|.++...|+++ +|+.++++++++..+.  ...+....++..++.++...|+...+. ...+....+
T Consensus       310 ~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~  377 (406)
T 3sf4_A          310 CWSLGNAYTALGNHD-QAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEI  377 (406)
T ss_dssp             HHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTSCC-----------
T ss_pred             HHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence            999999999999999 9999999999998874  345778889999999999999885544 333333333

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.7e-34  Score=247.92  Aligned_cols=310  Identities=18%  Similarity=0.228  Sum_probs=225.5

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      |..+.++..+|.++...|++++|+..|++++.+        .|....++..+|.++...|++++|+..|++++..     
T Consensus        64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----  130 (388)
T 1w3b_A           64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-----  130 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-----
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            334455566666666666666666666666654        1223345566666666666666666666666654     


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                         .|....++..+|.++...|++++|+..|++++..        .|....++.++|.++...|++++|+..|++++++.
T Consensus       131 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  199 (388)
T 1w3b_A          131 ---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD  199 (388)
T ss_dssp             ---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             ---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence               3445556666777777777777777777776654        34445567777777777777777777777777642


Q ss_pred             HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114          174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  253 (395)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  253 (395)
                             |+.   ..++.++|.++...|++++|+..+++++.+        .|....++.++|.++...|++++|+..++
T Consensus       200 -------p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  261 (388)
T 1w3b_A          200 -------PNF---LDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYR  261 (388)
T ss_dssp             -------TTC---HHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -------CCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                   222   345677888888888888888888887765        24445678889999999999999999999


Q ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHH
Q 016114          254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL  333 (395)
Q Consensus       254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  333 (395)
                      +++.        ..|....++..+|.++...|++++|+..++++++..     |++   ..++..++.++...|+++ +|
T Consensus       262 ~al~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~g~~~-~A  324 (388)
T 1w3b_A          262 RAIE--------LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-----PTH---ADSLNNLANIKREQGNIE-EA  324 (388)
T ss_dssp             HHHH--------TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHTTTCHH-HH
T ss_pred             HHHh--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccc---HHHHHHHHHHHHHcCCHH-HH
Confidence            9887        246666788899999999999999999999998753     333   456788999999999999 99


Q ss_pred             HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          334 LELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       334 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                      +..++++++.        .|+...++..+|.++...|++++|+..|++++++.++..
T Consensus       325 ~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~  373 (388)
T 1w3b_A          325 VRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             HHHHHHHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence            9999998753        344567889999999999999999999999988766543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.9e-33  Score=241.31  Aligned_cols=309  Identities=17%  Similarity=0.178  Sum_probs=265.5

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      +|....++..+|.++...|++++|..++++++..        .|....++..+|.++...|++++|+..|++++.+    
T Consensus        29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----   96 (388)
T 1w3b_A           29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL----   96 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----
Confidence            4555567788999999999999999999999875        2445678999999999999999999999999986    


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                          .|....++..+|.++...|++++|+..|++++..        +|....++..+|.++...|++++|+..|+++++.
T Consensus        97 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  164 (388)
T 1w3b_A           97 ----KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             ----CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             ----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence                5667788999999999999999999999999976        3555567889999999999999999999999885


Q ss_pred             HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHH
Q 016114          173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  252 (395)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  252 (395)
                      .       |+.   ..++.++|.++...|++++|+..|++++.+        +|....++..+|.++...|++++|+..+
T Consensus       165 ~-------p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~  226 (388)
T 1w3b_A          165 Q-------PNF---AVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAY  226 (388)
T ss_dssp             C-------TTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred             C-------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            2       222   456789999999999999999999999985        3455678899999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhH
Q 016114          253 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK  332 (395)
Q Consensus       253 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  332 (395)
                      ++++.+        +|....++..+|.++...|++++|+..++++++..     |+.   ..++..+|.++...|+++ +
T Consensus       227 ~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~g~~~-~  289 (388)
T 1w3b_A          227 LRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-----PHF---PDAYCNLANALKEKGSVA-E  289 (388)
T ss_dssp             HHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----SSC---HHHHHHHHHHHHHHSCHH-H
T ss_pred             HHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHHHcCCHH-H
Confidence            999884        46667788999999999999999999999998742     343   456889999999999999 9


Q ss_pred             HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114          333 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  388 (395)
Q Consensus       333 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  388 (395)
                      |+..|+++++..        |....++..+|.++...|++++|+..+++++++.++
T Consensus       290 A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  337 (388)
T 1w3b_A          290 AEDCYNTALRLC--------PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE  337 (388)
T ss_dssp             HHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHhhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            999999999862        333567889999999999999999999999876544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=100.00  E-value=2.5e-31  Score=230.01  Aligned_cols=314  Identities=17%  Similarity=0.148  Sum_probs=275.6

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      +..+..+..+|..+...|++++|+.+|++++++.    ..+......++..+|.++...|++++|+.++++++.+.+...
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  120 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN  120 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            5667778899999999999999999999999872    233445667899999999999999999999999999987753


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC---------------
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN---------------  158 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------  158 (395)
                        +.+....++..+|.++...|++++|+.++++++.+....  .+.+....++.++|.++...|+               
T Consensus       121 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~  196 (411)
T 4a1s_A          121 --DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK  196 (411)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred             --CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence              567888999999999999999999999999999998875  3457788899999999999999               


Q ss_pred             --HHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHH
Q 016114          159 --AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA  236 (395)
Q Consensus       159 --~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  236 (395)
                        +++|+.++++++++....    .+++....++.++|.++...|++++|+.++++++.+.....  +......++.++|
T Consensus       197 ~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la  270 (411)
T 4a1s_A          197 EALTRAVEFYQENLKLMRDL----GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNLG  270 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHH
Confidence              999999999999988764    45566778899999999999999999999999999987653  4455677899999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 016114          237 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEAL  316 (395)
Q Consensus       237 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  316 (395)
                      .++...|++++|+.++++++.+....  .+......++..+|.++...|++++|..++++++.+....  .+.+....++
T Consensus       271 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~  346 (411)
T 4a1s_A          271 NSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARAC  346 (411)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChHHHHHHH
Confidence            99999999999999999999987765  3444567888999999999999999999999999998776  4456677889


Q ss_pred             HHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114          317 DCLVSIQTRLGEDDTKLLELLKRVLRIQER  346 (395)
Q Consensus       317 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  346 (395)
                      ..+|.++...|+++ +|..++++++++.++
T Consensus       347 ~~la~~~~~~g~~~-~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          347 WSLGNAHSAIGGHE-RALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHHTTCHH-HHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHhccHH-HHHHHHHHHHHHHhh
Confidence            99999999999999 999999999998655

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=100.00  E-value=3.4e-31  Score=229.17  Aligned_cols=317  Identities=15%  Similarity=0.084  Sum_probs=276.3

Q ss_pred             HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114           56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  135 (395)
Q Consensus        56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  135 (395)
                      +.....+..+|..+...|++++|+..|++++...    ..+......++..+|.++...|++++|+.++++++.+.+.. 
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-  119 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM-  119 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-
Confidence            5667778899999999999999999999999871    22233345789999999999999999999999999998775 


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCC-------------
Q 016114          136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR-------------  202 (395)
Q Consensus       136 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------  202 (395)
                       .+++....++..+|.++...|++++|+.++++++.+....    .+.+....++.++|.++...|+             
T Consensus       120 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~  194 (411)
T 4a1s_A          120 -NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL----GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD  194 (411)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHH
T ss_pred             -cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHHHHcCcccccccchhhhhh
Confidence             3567788999999999999999999999999999998764    4566778889999999999999             


Q ss_pred             ----hHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 016114          203 ----GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  278 (395)
Q Consensus       203 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  278 (395)
                          +++|+.++++++.+.....  +.+....++.++|.++...|++++|+.++++++.+....  .+......++..+|
T Consensus       195 a~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la  270 (411)
T 4a1s_A          195 VKEALTRAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLG  270 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHH
Confidence                9999999999999887663  456778899999999999999999999999999987765  34445667889999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHH
Q 016114          279 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLT  358 (395)
Q Consensus       279 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  358 (395)
                      .++...|++++|+.++++++.+....  .+......++..+|.++...|+++ +|+.++++++.+....  .+.+....+
T Consensus       271 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~--~~~~~~~~~  345 (411)
T 4a1s_A          271 NSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFN-TAIEYHNRHLAIAQEL--GDRIGEARA  345 (411)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHC--CChHHHHHH
Confidence            99999999999999999999998765  444566788999999999999999 9999999999998775  345677889


Q ss_pred             HHHHHHHHHHhcchhhhchhhHHHHHHHHHHHh
Q 016114          359 LKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  391 (395)
Q Consensus       359 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  391 (395)
                      +..+|.+|...|++++|..++++++.+.++++.
T Consensus       346 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  378 (411)
T 4a1s_A          346 CWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX  378 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999877654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.4e-31  Score=227.52  Aligned_cols=314  Identities=15%  Similarity=0.111  Sum_probs=273.7

Q ss_pred             HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 016114           58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  137 (395)
Q Consensus        58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  137 (395)
                      .+..+...|.++...|++++|+.+|++++..    .+.+.+....++..+|.++...|++++|+.++++++.+.+..  .
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~   81 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G   81 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--c
Confidence            3456788999999999999999999999987    122333356789999999999999999999999999998765  3


Q ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCC---------------
Q 016114          138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR---------------  202 (395)
Q Consensus       138 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------  202 (395)
                      +.+....++..+|.++...|++++|+.++++++++....    +++.....++.++|.++...|+               
T Consensus        82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~  157 (406)
T 3sf4_A           82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE  157 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc----ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence            556788899999999999999999999999999998764    4556677889999999999999               


Q ss_pred             -----hHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 016114          203 -----GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL  277 (395)
Q Consensus       203 -----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  277 (395)
                           +++|+.++++++.+.....  +.+....++.++|.++...|++++|+.++++++.+....  ++.+....++..+
T Consensus       158 ~a~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l  233 (406)
T 3sf4_A          158 EVRDALQAAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNL  233 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHH
Confidence                 9999999999999887653  557778899999999999999999999999999987764  3445667789999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHH
Q 016114          278 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML  357 (395)
Q Consensus       278 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  357 (395)
                      |.++...|++++|+.++++++.+....  ++.+....++..+|.++...|+++ +|+.++++++.+....  .+.+....
T Consensus       234 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~--~~~~~~~~  308 (406)
T 3sf4_A          234 GNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYE-KAIDYHLKHLAIAQEL--NDRIGEGR  308 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHhc--CCcHHHHH
Confidence            999999999999999999999988764  445566788999999999999999 9999999999998774  34567788


Q ss_pred             HHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          358 TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       358 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                      ++..+|.+|...|++++|..++++++++.++.+
T Consensus       309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  341 (406)
T 3sf4_A          309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVG  341 (406)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999977653

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=100.00  E-value=1e-30  Score=219.92  Aligned_cols=313  Identities=15%  Similarity=0.112  Sum_probs=268.0

Q ss_pred             HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114           59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      ...+...|..+...|++++|+..+++++...    +.+.+....++..+|.++...|++++|+.++++++.+.+..  ++
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~   78 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GD   78 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cc
Confidence            3456778999999999999999999999871    22333346789999999999999999999999999998775  34


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCC----------------
Q 016114          139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR----------------  202 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------  202 (395)
                      .+....++..+|.++...|++++|+.++++++++....    ++++....++..+|.++...|+                
T Consensus        79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  154 (338)
T 3ro2_A           79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPED  154 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhh
Confidence            56778899999999999999999999999999998763    4556667788999999999999                


Q ss_pred             ----hHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 016114          203 ----GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  278 (395)
Q Consensus       203 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  278 (395)
                          +++|+.++++++.+.....  +.+....++..+|.++...|++++|+.++++++.+....  .+.+....++..+|
T Consensus       155 a~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~  230 (338)
T 3ro2_A          155 VRNALQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLG  230 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHH
Confidence                9999999999998877654  456677889999999999999999999999999987765  34456677899999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHH
Q 016114          279 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLT  358 (395)
Q Consensus       279 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  358 (395)
                      .++...|++++|..++++++.+....  .+.+....++..+|.++...|+++ +|..++++++.+....  .+.+....+
T Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~--~~~~~~~~~  305 (338)
T 3ro2_A          231 NAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYE-KAIDYHLKHLAIAQEL--KDRIGEGRA  305 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHhc--CCcHHHHHH
Confidence            99999999999999999999988764  445666788999999999999999 9999999999998774  345667788


Q ss_pred             HHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          359 LKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       359 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                      +..+|.++...|++++|..++++++.+.++.+
T Consensus       306 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  337 (338)
T 3ro2_A          306 CWSLGNAYTALGNHDQAMHFAEKHLEISREVG  337 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999988765

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=100.00  E-value=2e-30  Score=218.11  Aligned_cols=312  Identities=19%  Similarity=0.164  Sum_probs=269.3

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   95 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   95 (395)
                      ....+...|..+...|++++|+.+|+++++..    +.+.+....++..+|.++...|++++|+.++++++.+.....  
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--   77 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--   77 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--
Confidence            34567789999999999999999999999862    233445678899999999999999999999999999987763  


Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC-----------------
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN-----------------  158 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------  158 (395)
                      +.+....++..+|.++...|++++|+.++++++.+.+..  ++.+....++..+|.++...|+                 
T Consensus        78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a  155 (338)
T 3ro2_A           78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV  155 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence            567778899999999999999999999999999998774  3445577789999999999999                 


Q ss_pred             ---HHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHH
Q 016114          159 ---AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL  235 (395)
Q Consensus       159 ---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  235 (395)
                         +++|+.++++++.+.+..    .+.+....++.++|.++...|++++|+.++++++.+.....  +.+....++..+
T Consensus       156 ~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l  229 (338)
T 3ro2_A          156 RNALQAAVDLYEENLSLVTAL----GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNL  229 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHH
Confidence               999999999999988764    45666778889999999999999999999999999887653  445667789999


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 016114          236 AASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEA  315 (395)
Q Consensus       236 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  315 (395)
                      |.++...|++++|..++++++.+....  .+.+....++..+|.++...|++++|..++++++.+....  .+.+....+
T Consensus       230 ~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~  305 (338)
T 3ro2_A          230 GNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRA  305 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--CCcHHHHHH
Confidence            999999999999999999999987665  3445567788999999999999999999999999998775  345666778


Q ss_pred             HHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114          316 LDCLVSIQTRLGEDDTKLLELLKRVLRIQER  346 (395)
Q Consensus       316 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  346 (395)
                      +..+|.++...|+++ +|..++++++++.++
T Consensus       306 ~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          306 CWSLGNAYTALGNHD-QAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHTCHH-HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHcCChH-HHHHHHHHHHHHHHh
Confidence            999999999999999 999999999987654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=241.95  Aligned_cols=350  Identities=11%  Similarity=0.023  Sum_probs=226.7

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCc-ChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   90 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   90 (395)
                      +++..+.+++.+|.++..+|++++|+.+|++|+++.+...+. .++..+.++.++|.+|..+|++++|+.++++++.+.+
T Consensus        46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~  125 (472)
T 4g1t_A           46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE  125 (472)
T ss_dssp             C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence            344557788999999999999999999999999998765432 3566778899999999999999999999999999998


Q ss_pred             HhcCCCChhhhhhHHhHHHHHHHc--CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH---HHHCCCHHHHHHH
Q 016114           91 LNRGTESADLVLPLFSLGSLFIKE--GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA---KCANGNAEEAVEL  165 (395)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~  165 (395)
                      ...++.++..+.++..+|.++...  +++++|+.+|++++++     .|+++.   ++..++.+   +...++.++|+..
T Consensus       126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~---~~~~~~~~~~~l~~~~~~~~al~~  197 (472)
T 4g1t_A          126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPE---FTSGLAIASYRLDNWPPSQNAIDP  197 (472)
T ss_dssp             HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHH---HHHHHHHHHHHHHHSCCCCCTHHH
T ss_pred             hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHhcCchHHHHHHHH
Confidence            887777777888888888877665  4799999999999987     233333   33333333   3345555666666


Q ss_pred             HHHHHHHHHhc-------------------------------ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 016114          166 YKKALRVIKDS-------------------------------NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  214 (395)
Q Consensus       166 ~~~a~~~~~~~-------------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  214 (395)
                      +++++++....                               ....++   ...++.++|.+|...|++++|+..+++++
T Consensus       198 ~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al  274 (472)
T 4g1t_A          198 LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG---VTDVLRSAAKFYRRKDEPDKAIELLKKAL  274 (472)
T ss_dssp             HHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            66665531100                               000111   12344566777777777777777777766


Q ss_pred             HHHHhhhCCCChhHHHHHHHHHHHHHhhh-------------------cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHH
Q 016114          215 LITEKYKGKEHPSFVTHLLNLAASYSRSK-------------------NFVEAERLLRICLDIMTKTVGPDDQSISFPML  275 (395)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~-------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  275 (395)
                      +.        +|....++.++|.+|...+                   .+++|+..+++++.+        +|....++.
T Consensus       275 ~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~  338 (472)
T 4g1t_A          275 EY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--------NDNLFRVCS  338 (472)
T ss_dssp             HH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--------CTTTCCCHH
T ss_pred             Hh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--------CCchhhhhh
Confidence            64        2444556666666664432                   234444444444432        344555678


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH-HHcCCchhHHHHHHHHHHHHHHhcc------
Q 016114          276 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQ-TRLGEDDTKLLELLKRVLRIQEREF------  348 (395)
Q Consensus       276 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~A~~~~~~al~~~~~~~------  348 (395)
                      .+|.++...|++++|+.+|++++++.     +++......+..++.+. ...|+++ +|+.+|++++++.....      
T Consensus       339 ~lg~~~~~~~~~~~A~~~~~kaL~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~Ai~~y~kal~i~~~~~~~~~~~  412 (472)
T 4g1t_A          339 ILASLHALADQYEEAEYYFQKEFSKE-----LTPVAKQLLHLRYGNFQLYQMKCED-KAIHHFIEGVKINQKSREKEKMK  412 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHHHHHTSSCHH-HHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             hHHHHHHHhccHHHHHHHHHHHHhcC-----CCChHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhcCcccHHHHHHH
Confidence            89999999999999999999998742     33333344556666554 5678888 99999999987521100      


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhhhc
Q 016114          349 ----------GSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQ  394 (395)
Q Consensus       349 ----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  394 (395)
                                -..+|..+.++..+|.+|...|++++|+++|++|+++.+....+..
T Consensus       413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~  468 (472)
T 4g1t_A          413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS  468 (472)
T ss_dssp             HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence                      0113445678999999999999999999999999999988766543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=4e-31  Score=231.53  Aligned_cols=323  Identities=15%  Similarity=0.126  Sum_probs=260.9

Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114            9 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   88 (395)
Q Consensus         9 l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   88 (395)
                      +-..+|..+..+..+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..+++++..
T Consensus        18 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   89 (450)
T 2y4t_A           18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL   89 (450)
T ss_dssp             -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            33567888899999999999999999999999999875        2333678899999999999999999999999987


Q ss_pred             HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH------------HHHHHHHHHHC
Q 016114           89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA------------MCSLAHAKCAN  156 (395)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------~~~la~~~~~~  156 (395)
                              .|....++..+|.++...|++++|+..|++++..     .++++....+            +..+|.++...
T Consensus        90 --------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  156 (450)
T 2y4t_A           90 --------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS  156 (450)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                    4566788999999999999999999999999865     2222210123            34557889999


Q ss_pred             CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHH
Q 016114          157 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA  236 (395)
Q Consensus       157 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  236 (395)
                      |++++|+..++++++..       +..   ..++..+|.+|...|++++|+..+++++...        |....++..+|
T Consensus       157 ~~~~~A~~~~~~~~~~~-------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~  218 (450)
T 2y4t_A          157 GDYTAAIAFLDKILEVC-------VWD---AELRELRAECFIKEGEPRKAISDLKAASKLK--------NDNTEAFYKIS  218 (450)
T ss_dssp             TCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------CSCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-------CCC---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHH
Confidence            99999999999998852       222   3456889999999999999999999998863        33456788999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHH---------HHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114          237 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM---------LHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  307 (395)
Q Consensus       237 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  307 (395)
                      .++...|++++|+..+++++.+     .++++.....+         ..+|.++...|++++|+.+|++++.+.     +
T Consensus       219 ~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p  288 (450)
T 2y4t_A          219 TLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----P  288 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----C
Confidence            9999999999999999999874     22332222221         334999999999999999999998853     4


Q ss_pred             CChHH-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114          308 DSLPV-GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  386 (395)
Q Consensus       308 ~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  386 (395)
                      +++.. ...+..+|.++...|+++ +|+..+++++++        .|....++..+|.++...|++++|...|++++++.
T Consensus       289 ~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  359 (450)
T 2y4t_A          289 SIAEYTVRSKERICHCFSKDEKPV-EAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN  359 (450)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            44432 567889999999999999 999999999976        23345789999999999999999999999999876


Q ss_pred             HHH
Q 016114          387 MKY  389 (395)
Q Consensus       387 ~~~  389 (395)
                      ++.
T Consensus       360 p~~  362 (450)
T 2y4t_A          360 END  362 (450)
T ss_dssp             SSC
T ss_pred             cch
Confidence            543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=1.2e-30  Score=221.54  Aligned_cols=313  Identities=15%  Similarity=0.134  Sum_probs=258.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      +..+..+|..+...|++++|+..|+++++..        |....++..+|.++...|++++|+..+++++..        
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   66 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--------   66 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence            4678899999999999999999999999852        233568899999999999999999999999987        


Q ss_pred             ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh---hHHHHHHHH------------HHHHHHCCCHHH
Q 016114           97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG---RVGMAMCSL------------AHAKCANGNAEE  161 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~  161 (395)
                      .|....++..+|.++...|++++|+..+++++..        .|   ....++..+            |.++...|++++
T Consensus        67 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  138 (359)
T 3ieg_A           67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA  138 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence            4556688999999999999999999999999875        33   334444444            799999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh
Q 016114          162 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR  241 (395)
Q Consensus       162 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  241 (395)
                      |+..++++++..       |+.   ..++..+|.++...|++++|+..+++++..        .|....++..+|.++..
T Consensus       139 A~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~  200 (359)
T 3ieg_A          139 AITFLDKILEVC-------VWD---AELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQ  200 (359)
T ss_dssp             HHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-------CCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH
Confidence            999999998852       233   356788999999999999999999999874        34455788999999999


Q ss_pred             hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHH---------HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH-
Q 016114          242 SKNFVEAERLLRICLDIMTKTVGPDDQSISFP---------MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP-  311 (395)
Q Consensus       242 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-  311 (395)
                      .|++++|...+++++..     .++++.....         ...+|.++...|++++|+..+++++...     ++.+. 
T Consensus       201 ~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~  270 (359)
T 3ieg_A          201 LGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEY  270 (359)
T ss_dssp             HTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHH
T ss_pred             cCCHHHHHHHHHHHHhh-----CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHH
Confidence            99999999999999874     2333332221         2355889999999999999999998854     44443 


Q ss_pred             HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          312 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       312 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                      ....+..+|.++...|+++ +|+..++++++.        .|....++..+|.++...|++++|...|++++++.++..
T Consensus       271 ~~~~~~~la~~~~~~~~~~-~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~  340 (359)
T 3ieg_A          271 TVRSKERICHCFSKDEKPV-EAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ  340 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHHHHHHHccCHH-HHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            3456778999999999999 999999999986        233356889999999999999999999999998876543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=100.00  E-value=1.4e-28  Score=210.39  Aligned_cols=352  Identities=8%  Similarity=0.011  Sum_probs=269.0

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHH--HHHHHhhCchhHHH-----------H
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM--AKVLGSIGRAKKAV-----------E   80 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~-----------~   80 (395)
                      +.......+-...+...+++++|..+++++.+......  .++... .++.+  .......+.+..+.           .
T Consensus         9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~--~~~~~~-~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~   85 (383)
T 3ulq_A            9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQME--EDQDLH-LYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSD   85 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSC--CCHHHH-HHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhc--cchHHH-HHHHHHHHHHHHHHhhcCcccccccccccchhh
Confidence            33334444445566789999999999999877665431  223322 22221  22223334444444           4


Q ss_pred             HHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHH
Q 016114           81 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE  160 (395)
Q Consensus        81 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  160 (395)
                      .+++.-......   +.......++..|..+...|++++|+.++++++.+.+..  ++++..+.++..+|.+|...|+++
T Consensus        86 ~~~~i~~~~~~~---~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~  160 (383)
T 3ulq_A           86 LLLEIDKKQARL---TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTY  160 (383)
T ss_dssp             HHHHHHHHTHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhcCCCc---hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHH
Confidence            444432221110   011122345568999999999999999999999886653  345568899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH
Q 016114          161 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  240 (395)
Q Consensus       161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  240 (395)
                      +|+.++++++++.++.   +...+....++.++|.+|...|++++|+.++++++++.+...  +.+....++.++|.+|.
T Consensus       161 ~A~~~~~~al~~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~  235 (383)
T 3ulq_A          161 FSMDYARQAYEIYKEH---EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKN  235 (383)
T ss_dssp             HHHHHHHHHHHHHHTC---STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHH
Confidence            9999999999999864   223667788999999999999999999999999999987753  56677889999999999


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 016114          241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  320 (395)
Q Consensus       241 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  320 (395)
                      .+|++++|+.++++++.+....  .+.|....++.++|.++...|++++|..++++++.+....   ..+.....+..++
T Consensus       236 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~  310 (383)
T 3ulq_A          236 SQSQYEDAIPYFKRAIAVFEES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLK  310 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Confidence            9999999999999999987765  2227778899999999999999999999999999998775   3344444477899


Q ss_pred             HHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          321 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       321 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                      .++...|+.     ..+++++..+++.  ...+....++..+|.+|...|++++|..++++++.+.+++.
T Consensus       311 ~~~~~~~~~-----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~  373 (383)
T 3ulq_A          311 SLYLSGPDE-----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQ  373 (383)
T ss_dssp             HHHTSSCCH-----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCS
T ss_pred             HHHhCCCcH-----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Confidence            999999874     3556666666654  45678888999999999999999999999999999987654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.98  E-value=2.8e-29  Score=227.72  Aligned_cols=324  Identities=12%  Similarity=0.047  Sum_probs=259.1

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC-----------------------------------------
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG-----------------------------------------   52 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------------------   52 (395)
                      +..+.+++.+|.+|...|++++|+..|+++++.......                                         
T Consensus       197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  276 (597)
T 2xpi_A          197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM  276 (597)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence            456788999999999999999999999999865311000                                         


Q ss_pred             ----------------------cChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHH
Q 016114           53 ----------------------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL  110 (395)
Q Consensus        53 ----------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~  110 (395)
                                            ...+....++..+|.++...|++++|+..|++++..        .|....++..++.+
T Consensus       277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~  348 (597)
T 2xpi_A          277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYNLDVYPLHLAS  348 (597)
T ss_dssp             TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHHHH
T ss_pred             HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------CcccHHHHHHHHHH
Confidence                                  000123445667778888888888888888887764        23445667778888


Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHH
Q 016114          111 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  190 (395)
Q Consensus       111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  190 (395)
                      +...|++++|...+++++..        .|....++..+|.+|...|++++|..+|++++++.       +..   ..++
T Consensus       349 ~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~---~~~~  410 (597)
T 2xpi_A          349 LHESGEKNKLYLISNDLVDR--------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-------PQF---GPAW  410 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH--------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC---HHHH
T ss_pred             HHHhCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCC---HHHH
Confidence            88888888888888887754        34445678889999999999999999999998852       222   3466


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcch
Q 016114          191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  270 (395)
Q Consensus       191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  270 (395)
                      ..++.++...|++++|+..|++++..        .|....++..+|.++...|++++|..+|++++..        .|..
T Consensus       411 ~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~  474 (597)
T 2xpi_A          411 IGFAHSFAIEGEHDQAISAYTTAARL--------FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--------FQYD  474 (597)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHT--------TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CCCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Confidence            88999999999999999999998864        2334467888999999999999999999999874        3445


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccC
Q 016114          271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP-VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  349 (395)
Q Consensus       271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  349 (395)
                      ..++..+|.++...|++++|+.+|+++++.....  +..|. ...++..++.++...|+++ +|+..++++++..     
T Consensus       475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~-----  546 (597)
T 2xpi_A          475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYD-AAIDALNQGLLLS-----  546 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHS-----
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHhC-----
Confidence            6788999999999999999999999999986543  23344 3678999999999999999 9999999999762     


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          350 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       350 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                      +.   ...++..++.+|...|++++|..+|++++++.++..
T Consensus       547 p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~  584 (597)
T 2xpi_A          547 TN---DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI  584 (597)
T ss_dssp             SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence            33   357889999999999999999999999999887654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.97  E-value=1.7e-29  Score=226.19  Aligned_cols=326  Identities=14%  Similarity=0.096  Sum_probs=259.2

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHH---------
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYH---------   83 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---------   83 (395)
                      +|..+.++..+|.++...|++++|+..|++++++.        |....++..+|.++...|++++|+..|+         
T Consensus        55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  126 (537)
T 3fp2_A           55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--------PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFD  126 (537)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC
Confidence            34456778899999999999999999999998862        3345678899999999999999988663         


Q ss_pred             --------------------------------------------------------------------------------
Q 016114           84 --------------------------------------------------------------------------------   83 (395)
Q Consensus        84 --------------------------------------------------------------------------------   83 (395)
                                                                                                      
T Consensus       127 ~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  206 (537)
T 3fp2_A          127 GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSA  206 (537)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHh
Confidence                                                                                            


Q ss_pred             -------------HHHHHHHHhcC--CCChh----hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 016114           84 -------------RVITILELNRG--TESAD----LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  144 (395)
Q Consensus        84 -------------~al~~~~~~~~--~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  144 (395)
                                   +++..+++...  ++++.    .+.++..+|.++...|++++|+..+++++..        .|. ..
T Consensus       207 ~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~  277 (537)
T 3fp2_A          207 TDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PN  277 (537)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-ch
Confidence                         22222222211  11111    2456888999999999999999999999986        334 57


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114          145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  224 (395)
Q Consensus       145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  224 (395)
                      ++..+|.++...|++++|+..++++++..       ++.   ..++..+|.++...|++++|+..+++++...       
T Consensus       278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------  340 (537)
T 3fp2_A          278 SYIFLALTLADKENSQEFFKFFQKAVDLN-------PEY---PPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-------  340 (537)
T ss_dssp             HHHHHHHHTCCSSCCHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhccC-------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------
Confidence            88999999999999999999999999853       232   3457889999999999999999999999862       


Q ss_pred             ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 016114          225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  304 (395)
Q Consensus       225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  304 (395)
                       |....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..++++++.....
T Consensus       341 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  411 (537)
T 3fp2_A          341 -PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ  411 (537)
T ss_dssp             -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence             333467889999999999999999999999884        35556788999999999999999999999999987543


Q ss_pred             cCCCChHHHHHHHHHHHHHHHc----------CCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhh
Q 016114          305 FGKDSLPVGEALDCLVSIQTRL----------GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE  374 (395)
Q Consensus       305 ~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  374 (395)
                      .  ........+..++.++...          |+++ +|+.+|+++++..        |....++..+|.+|...|++++
T Consensus       412 ~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~g~~~~  480 (537)
T 3fp2_A          412 E--KIHVGIGPLIGKATILARQSSQDPTQLDEEKFN-AAIKLLTKACELD--------PRSEQAKIGLAQLKLQMEKIDE  480 (537)
T ss_dssp             S--SCSSTTHHHHHHHHHHHHHHTC----CCHHHHH-HHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             h--hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHH-HHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHH
Confidence            2  2222233456788889988          9999 9999999999862        3334778999999999999999


Q ss_pred             hchhhHHHHHHHHHHHhh
Q 016114          375 KFPLKKRLSNLRMKYKQK  392 (395)
Q Consensus       375 A~~~~~~a~~~~~~~~~~  392 (395)
                      |..+|++++++.+...+.
T Consensus       481 A~~~~~~al~~~~~~~~~  498 (537)
T 3fp2_A          481 AIELFEDSAILARTMDEK  498 (537)
T ss_dssp             HHHHHHHHHHHC--CHHH
T ss_pred             HHHHHHHHHHhCCCcHHH
Confidence            999999999998765543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.97  E-value=3.2e-29  Score=224.46  Aligned_cols=324  Identities=17%  Similarity=0.171  Sum_probs=263.3

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      .+..+..+..+|..+...|++++|+..|++++...        |....++..+|.++...|++++|+..+++++..    
T Consensus        21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----   88 (537)
T 3fp2_A           21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--------PNEPVFYSNISACYISTGDLEKVIEFTTKALEI----   88 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence            34567889999999999999999999999999862        334578999999999999999999999999987    


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHH-----------------------------------------------
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFS-----------------------------------------------  125 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-----------------------------------------------  125 (395)
                          .|....++..+|.++...|++++|+..|+                                               
T Consensus        89 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~  164 (537)
T 3fp2_A           89 ----KPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN  164 (537)
T ss_dssp             ----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred             ----CCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence                46677889999999999999999988763                                               


Q ss_pred             -------------------------------------------------------HHHHHHHHHhC--CCChh----HHH
Q 016114          126 -------------------------------------------------------RILKIYTKVYG--ENDGR----VGM  144 (395)
Q Consensus       126 -------------------------------------------------------~al~~~~~~~~--~~~~~----~~~  144 (395)
                                                                             +++..+++...  ++++.    .+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~  244 (537)
T 3fp2_A          165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL  244 (537)
T ss_dssp             HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH
T ss_pred             hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH
Confidence                                                                   22222222221  22222    255


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114          145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  224 (395)
Q Consensus       145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  224 (395)
                      ++..+|.++...|++++|+..++++++.       .++    ..++..+|.++...|++++|+.++++++..        
T Consensus       245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~-------~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------  305 (537)
T 3fp2_A          245 ALCYTGIFHFLKNNLLDAQVLLQESINL-------HPT----PNSYIFLALTLADKENSQEFFKFFQKAVDL--------  305 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCC----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhc-------CCC----chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------
Confidence            7888999999999999999999999985       222    456788999999999999999999999875        


Q ss_pred             ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 016114          225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  304 (395)
Q Consensus       225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  304 (395)
                      .|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..++++++..   
T Consensus       306 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---  374 (537)
T 3fp2_A          306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--------NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF---  374 (537)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence            2444567899999999999999999999999884        34455788999999999999999999999998863   


Q ss_pred             cCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh----------cchhh
Q 016114          305 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL----------GRKEE  374 (395)
Q Consensus       305 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~  374 (395)
                        +++   ..++..+|.++...|+++ +|+..|+++++.......  .......+..+|.++...          |++++
T Consensus       375 --~~~---~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  446 (537)
T 3fp2_A          375 --PTL---PEVPTFFAEILTDRGDFD-TAIKQYDIAKRLEEVQEK--IHVGIGPLIGKATILARQSSQDPTQLDEEKFNA  446 (537)
T ss_dssp             --TTC---THHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHCSS--CSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred             --CCC---hHHHHHHHHHHHHhCCHH-HHHHHHHHHHHcCCcchh--hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence              333   346788999999999999 999999999998765322  112234467788999999          99999


Q ss_pred             hchhhHHHHHHHHHHH
Q 016114          375 KFPLKKRLSNLRMKYK  390 (395)
Q Consensus       375 A~~~~~~a~~~~~~~~  390 (395)
                      |+.+|++++++.++..
T Consensus       447 A~~~~~~a~~~~p~~~  462 (537)
T 3fp2_A          447 AIKLLTKACELDPRSE  462 (537)
T ss_dssp             HHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHhCCCCH
Confidence            9999999998876543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.97  E-value=1e-27  Score=205.06  Aligned_cols=272  Identities=8%  Similarity=-0.004  Sum_probs=231.5

Q ss_pred             HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114           60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  139 (395)
Q Consensus        60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  139 (395)
                      ..++..|..+...|++++|+.++++++.+.+..  ++.+..+.++..+|.++...|++++|+.++.+++++.+.. +...
T Consensus       104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~  180 (383)
T 3ulq_A          104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYN  180 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccch
Confidence            355668999999999999999999999886653  3566688999999999999999999999999999998874 2225


Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 016114          140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  219 (395)
Q Consensus       140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  219 (395)
                      +..+.++.++|.+|...|++++|+.++++++++.++.    ++++....++.++|.+|...|++++|+.++++++.+.+.
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  256 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE----KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE  256 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            6678899999999999999999999999999998864    567777889999999999999999999999999999876


Q ss_pred             hhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114          220 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  299 (395)
Q Consensus       220 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  299 (395)
                      ..  +.|....++.++|.++...|++++|..++++++.+....   .++.....+..+|.++...|++    ..+++++.
T Consensus       257 ~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~~~~----~~~~~al~  327 (383)
T 3ulq_A          257 SN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKSLYLSGPDE----EAIQGFFD  327 (383)
T ss_dssp             TT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHTSSCCH----HHHHHHHH
T ss_pred             hc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcH----HHHHHHHH
Confidence            53  226778899999999999999999999999999988766   3344444467899999999995    44555555


Q ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCC
Q 016114          300 IREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS  350 (395)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  350 (395)
                      ..++.  ...+....++..+|.++...|+++ +|..++++++++.+++...
T Consensus       328 ~~~~~--~~~~~~~~~~~~la~~y~~~g~~~-~A~~~~~~al~~~~~i~~~  375 (383)
T 3ulq_A          328 FLESK--MLYADLEDFAIDVAKYYHERKNFQ-KASAYFLKVEQVRQLIQGG  375 (383)
T ss_dssp             HHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHTSCSSC
T ss_pred             HHHHC--cCHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHhhcc
Confidence            55554  456777888999999999999999 9999999999998876543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.3e-28  Score=204.71  Aligned_cols=287  Identities=21%  Similarity=0.243  Sum_probs=236.3

Q ss_pred             hhhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHH
Q 016114            5 IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR   84 (395)
Q Consensus         5 ~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   84 (395)
                      ..+..++++|..+.++..+|.++...|++++|+.++++++++.....+++.+....++..+|.++...|++++|+.++++
T Consensus        15 ~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~   94 (311)
T 3nf1_A           15 YFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND   94 (311)
T ss_dssp             SCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            44567788999999999999999999999999999999999988876667888999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 016114           85 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  164 (395)
Q Consensus        85 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  164 (395)
                      ++.+.+...+++.+....++..+|.++...|++++|+.++++++.+.+...+++++....++..+|.++...|++++|+.
T Consensus        95 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  174 (311)
T 3nf1_A           95 ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY  174 (311)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999888777889999999999999999999999999999999999888888889999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh-CCCChh------HHHHHHHHHH
Q 016114          165 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK-GKEHPS------FVTHLLNLAA  237 (395)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~------~~~~~~~la~  237 (395)
                      ++++++++....  .+++.+....++..+|.++...|++++|+.++++++....... +...+.      ....+..++.
T Consensus       175 ~~~~a~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (311)
T 3nf1_A          175 YYQRALEIYQTK--LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKG  252 (311)
T ss_dssp             HHHHHHHHHHHT--SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcC
Confidence            999999998764  4456777788899999999999999999999999998765421 111111      2223334444


Q ss_pred             HHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          238 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       238 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      .+...+.+.+|...+.++..        .+|....++..+|.+|...|++++|..++++++++.
T Consensus       253 ~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          253 KQKDGTSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             -----CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            45555566666666666554        467788899999999999999999999999999875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=2.3e-28  Score=203.23  Aligned_cols=285  Identities=22%  Similarity=0.220  Sum_probs=234.3

Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      .++++|....++..+|.++...|++++|+.++++++.+.....+++++....++..+|.++...|++++|+.++++++.+
T Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            35678889999999999999999999999999999999998877778889999999999999999999999999999998


Q ss_pred             HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHH
Q 016114          173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  252 (395)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  252 (395)
                      ....  .+++++....++.++|.++...|++++|+.++++++.+.....+.+++....++..+|.++...|++++|+.++
T Consensus        99 ~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  176 (311)
T 3nf1_A           99 REKT--LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY  176 (311)
T ss_dssp             HHHH--HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHH--hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8764  34566777888999999999999999999999999999988877788999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-cCCCChH------HHHHHHHHHHHHHH
Q 016114          253 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA-FGKDSLP------VGEALDCLVSIQTR  325 (395)
Q Consensus       253 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~------~~~~~~~l~~~~~~  325 (395)
                      ++++.+.....+++++....++..+|.++...|++++|..+++++++..... ++...+.      ....+..++..+..
T Consensus       177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (311)
T 3nf1_A          177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD  256 (311)
T ss_dssp             HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence            9999998888777788889999999999999999999999999999876542 1111111      12333344555555


Q ss_pred             cCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114          326 LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  388 (395)
Q Consensus       326 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  388 (395)
                      .+.+. +|...++++..        .+|....++..+|.+|...|++++|..+|++++++.++
T Consensus       257 ~~~~~-~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          257 GTSFG-EYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             -CCSC-CCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHH-HHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            56666 66666666653        56888999999999999999999999999999998764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=1e-29  Score=216.64  Aligned_cols=314  Identities=16%  Similarity=0.075  Sum_probs=242.3

Q ss_pred             HHHHHhhhcHHHHHH-HHHHHHHHHHHhcCcChH-HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhh
Q 016114           24 GSMYSTLENYEKSML-VYQRVINVLESRYGKTSI-LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  101 (395)
Q Consensus        24 ~~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  101 (395)
                      +.++...|+|++|+. .|.+++.+.     ++.| .....++.+|.++...|++++|+..+++++..        .|...
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~   98 (368)
T 1fch_A           32 AEAHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHM   98 (368)
T ss_dssp             --------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCH
T ss_pred             chhhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCH
Confidence            346777899999999 888887642     2222 23456788999999999999999999999875        56677


Q ss_pred             hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114          102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  181 (395)
Q Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  181 (395)
                      .++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++....       
T Consensus        99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------  163 (368)
T 1fch_A           99 EAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-------  163 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-------
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------
Confidence            88999999999999999999999999987        344567899999999999999999999999998532       


Q ss_pred             CchHHH-------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHH
Q 016114          182 DDSIME-------------NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  248 (395)
Q Consensus       182 ~~~~~~-------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  248 (395)
                      +.....             .....++.++ ..|++++|+..+++++...     +..+ ...++..+|.++...|++++|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-----p~~~-~~~~~~~l~~~~~~~g~~~~A  236 (368)
T 1fch_A          164 AYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD-----PTSI-DPDVQCGLGVLFNLSGEYDKA  236 (368)
T ss_dssp             TTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-----TTSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-----cCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence            221111             1112466666 8999999999999998862     1111 456788999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC
Q 016114          249 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE  328 (395)
Q Consensus       249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  328 (395)
                      +..+++++.+        .|....++..+|.++...|++++|+..+++++.+.        |....++..+|.++...|+
T Consensus       237 ~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~  300 (368)
T 1fch_A          237 VDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGISCINLGA  300 (368)
T ss_dssp             HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCC
Confidence            9999999984        45567789999999999999999999999998863        3344678999999999999


Q ss_pred             chhHHHHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          329 DDTKLLELLKRVLRIQEREFGS---ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       329 ~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      ++ +|+.+|++++.+.....++   .++....++..+|.++...|++++|..+++++++..++.
T Consensus       301 ~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~  363 (368)
T 1fch_A          301 HR-EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM  363 (368)
T ss_dssp             HH-HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred             HH-HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence            99 9999999999987653221   112236789999999999999999999999999876653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.97  E-value=2.8e-27  Score=201.89  Aligned_cols=339  Identities=12%  Similarity=0.038  Sum_probs=256.7

Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHH--HHHhhCchhHHH---------HHHHHHHHHHHHhcCCC
Q 016114           28 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK--VLGSIGRAKKAV---------EIYHRVITILELNRGTE   96 (395)
Q Consensus        28 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~---------~~~~~al~~~~~~~~~~   96 (395)
                      ...+++++|...++++........  .++... .++.+-.  .....+.+..+.         ..+++.-......   +
T Consensus        23 i~~~~~~~A~~l~~~i~~~~~~~~--~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~---~   96 (378)
T 3q15_A           23 IRQFSVPDAEILKAEVEQDIQQME--EDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL---T   96 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHGGGBC--CCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH---H
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHhc--ccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC---c
Confidence            788999999999999876654431  122222 2232222  122223333333         3333322111110   1


Q ss_pred             ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114           97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  176 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  176 (395)
                      +......++..|..+...|++++|+.++++++.+....  ++.+..+.++.++|.+|...|++++|+.++++++++.++.
T Consensus        97 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~  174 (378)
T 3q15_A           97 GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH  174 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence            12223356778999999999999999999999887653  3456788999999999999999999999999999998763


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114          177 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  256 (395)
Q Consensus       177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  256 (395)
                         +...+....++.++|.++...|++++|+.++++++++.+...  +.+....++.++|.+|..+|++++|+.++++++
T Consensus       175 ---~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  249 (378)
T 3q15_A          175 ---PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA  249 (378)
T ss_dssp             ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ---CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence               222456788899999999999999999999999999987653  445677889999999999999999999999999


Q ss_pred             HHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHH
Q 016114          257 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL  336 (395)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~  336 (395)
                      .+....   .+|....++..+|.++...|++++|..++++++++....   ..+.....+..++.++...++.     ..
T Consensus       250 ~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ly~~~~~~-----~~  318 (378)
T 3q15_A          250 KVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAVYKETVDE-----RK  318 (378)
T ss_dssp             HHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHHHSSSCCH-----HH
T ss_pred             HHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcH-----HH
Confidence            988765   456668899999999999999999999999999987543   2333444567788888777762     34


Q ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhh
Q 016114          337 LKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  392 (395)
Q Consensus       337 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  392 (395)
                      +.+++..+++.  ...+.....+..+|.+|...|++++|..+|++++++.+++...
T Consensus       319 ~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~~  372 (378)
T 3q15_A          319 IHDLLSYFEKK--NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKG  372 (378)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Confidence            55555555552  4567788889999999999999999999999999999987653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=1.6e-29  Score=215.08  Aligned_cols=297  Identities=15%  Similarity=0.094  Sum_probs=230.6

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      ++..+..++.+|..+...|++++|+.+|++++...        |....++..+|.++...|++++|+..|++++.+    
T Consensus        61 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----  128 (365)
T 4eqf_A           61 PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--------PGDAEAWQFLGITQAENENEQAAIVALQRCLEL----  128 (365)
T ss_dssp             TTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             cccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----
Confidence            33445668899999999999999999999999862        334667899999999999999999999999987    


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG--RVGMAMCSLAHAKCANGNAEEAVELYKKAL  170 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  170 (395)
                          .|....++..+|.++...|++++|+.++++++.+..........  .....+..+|.++...|++++|+.++++++
T Consensus       129 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  204 (365)
T 4eqf_A          129 ----QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA  204 (365)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHH
T ss_pred             ----CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence                45667889999999999999999999999999875443111000  123445667999999999999999999999


Q ss_pred             HHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHH
Q 016114          171 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  250 (395)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  250 (395)
                      +..       |+.. ...++.++|.++...|++++|+.++++++++        .|....++.++|.++...|++++|+.
T Consensus       205 ~~~-------p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~  268 (365)
T 4eqf_A          205 HQN-------GDMI-DPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVE  268 (365)
T ss_dssp             HHS-------CSSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhC-------cCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            863       2210 1346688999999999999999999999986        24446688999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH----HHHHHHHHHHHHHHc
Q 016114          251 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP----VGEALDCLVSIQTRL  326 (395)
Q Consensus       251 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~l~~~~~~~  326 (395)
                      .+++++.+        +|....++..+|.++...|++++|+.+|++++++.....++.++.    ...++..++.++...
T Consensus       269 ~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  340 (365)
T 4eqf_A          269 AYTRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM  340 (365)
T ss_dssp             HHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH
T ss_pred             HHHHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHc
Confidence            99999984        466688999999999999999999999999999886543332221    256788999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHhccCC
Q 016114          327 GEDDTKLLELLKRVLRIQEREFGS  350 (395)
Q Consensus       327 ~~~~~~A~~~~~~al~~~~~~~~~  350 (395)
                      |+.+ .+....++.++.+++.++.
T Consensus       341 g~~~-~a~~~~~~~l~~~~~~~~~  363 (365)
T 4eqf_A          341 DQPE-LFQAANLGDLDVLLRAFNL  363 (365)
T ss_dssp             TCHH-HHHHHHTTCCGGGTTTTTC
T ss_pred             CcHH-HHHHHHHhhHHHHHHhcCC
Confidence            9998 8888888777766655543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.97  E-value=3e-29  Score=210.37  Aligned_cols=298  Identities=12%  Similarity=0.154  Sum_probs=244.6

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      ..++..+|..++..|++++|+..+++++...        |....++..++.++...|++++|+..+++++..        
T Consensus        22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------   85 (330)
T 3hym_B           22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--------PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--------   85 (330)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--------
Confidence            3457789999999999999999999998752        223345667889999999999999999999886        


Q ss_pred             ChhhhhhHHhHHHHHHHcC-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114           97 SADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      .|....++..+|.++...| ++++|+.++++++..        .|....++..+|.++...|++++|+..++++++... 
T Consensus        86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-  156 (330)
T 3hym_B           86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-  156 (330)
T ss_dssp             CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-
T ss_pred             CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-
Confidence            4566788999999999999 999999999999875        344456789999999999999999999999998632 


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114          176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  255 (395)
Q Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  255 (395)
                            +.   ...+..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+..++++
T Consensus       157 ------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  219 (330)
T 3hym_B          157 ------GC---HLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDA  219 (330)
T ss_dssp             ------TC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------cc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence                  22   234567999999999999999999999874        3445678899999999999999999999999


Q ss_pred             HHHHHHhhCCCC-cchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHH
Q 016114          256 LDIMTKTVGPDD-QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL  334 (395)
Q Consensus       256 ~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~  334 (395)
                      +.+......... +....++..+|.++...|++++|+.+++++++..     ++   ...++..+|.++...|+++ +|.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~---~~~~~~~la~~~~~~g~~~-~A~  290 (330)
T 3hym_B          220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-----PQ---NASTYSAIGYIHSLMGNFE-NAV  290 (330)
T ss_dssp             HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT---CSHHHHHHHHHHHHHTCHH-HHH
T ss_pred             HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-----cc---chHHHHHHHHHHHHhccHH-HHH
Confidence            997655433222 4556788999999999999999999999999864     33   3456889999999999999 999


Q ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH-HHhcchh
Q 016114          335 ELLKRVLRIQEREFGSESEEVMLTLKKVVSYL-DKLGRKE  373 (395)
Q Consensus       335 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~  373 (395)
                      .++++++++        .|+...++..++.++ ...|+.+
T Consensus       291 ~~~~~al~~--------~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          291 DYFHTALGL--------RRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHTTTTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence            999998864        233356788889988 4555543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.1e-28  Score=216.11  Aligned_cols=325  Identities=15%  Similarity=0.088  Sum_probs=267.3

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      ...+..+..+|..++..|++++|+..|++++...     ++    ..++..+|.++...|++++|+..++++++.     
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----   68 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELK-----ED----PVFYSNLSACYVSVGDLKKVVEMSTKALEL-----   68 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----CC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-----
Confidence            3567889999999999999999999999999862     22    567889999999999999999999999986     


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH-----------------------h---------------
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV-----------------------Y---------------  135 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~---------------  135 (395)
                         .|....++..+|.++...|++++|+..|++++......                       .               
T Consensus        69 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  145 (514)
T 2gw1_A           69 ---KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELST  145 (514)
T ss_dssp             ---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------
T ss_pred             ---ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence               46677899999999999999999999999987642100                       0               


Q ss_pred             ---------CC------------------------CChhHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHhcccC
Q 016114          136 ---------GE------------------------NDGRVGMAMCSLAHAKCA---NGNAEEAVELYKKALRVIKDSNYM  179 (395)
Q Consensus       136 ---------~~------------------------~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~  179 (395)
                               .+                        ..|.....+..+|.++..   .|++++|+..++++++..+.....
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  225 (514)
T 2gw1_A          146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK  225 (514)
T ss_dssp             -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence                     00                        002235667778887776   899999999999999954332101


Q ss_pred             CCCc----hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114          180 SLDD----SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  255 (395)
Q Consensus       180 ~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  255 (395)
                      .++.    +....++..+|.++...|++++|+..+++++..        .|. ..++..+|.++...|++++|+..++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~  296 (514)
T 2gw1_A          226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKA  296 (514)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred             CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            2222    566778899999999999999999999999875        233 778899999999999999999999999


Q ss_pred             HHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHH
Q 016114          256 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE  335 (395)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~  335 (395)
                      +..        .|....++..+|.++...|++++|+..+++++...     +..   ..++..+|.++...|+++ +|+.
T Consensus       297 ~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~~~~~-~A~~  359 (514)
T 2gw1_A          297 LKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-----PEN---IFPYIQLACLAYRENKFD-DCET  359 (514)
T ss_dssp             HTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-----SSC---SHHHHHHHHHTTTTTCHH-HHHH
T ss_pred             hhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----hhh---HHHHHHHHHHHHHcCCHH-HHHH
Confidence            862        45556788999999999999999999999998743     333   347889999999999999 9999


Q ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          336 LLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       336 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      .++++++..     +   ....++..+|.++...|++++|+..+++++.+.++.
T Consensus       360 ~~~~~~~~~-----~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  405 (514)
T 2gw1_A          360 LFSEAKRKF-----P---EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL  405 (514)
T ss_dssp             HHHHHHHHS-----T---TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHc-----c---cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            999999752     2   234678899999999999999999999999987765

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=219.86  Aligned_cols=288  Identities=13%  Similarity=0.072  Sum_probs=237.1

Q ss_pred             HHHHHHHHHHHHh---hCchhHHHHHHHHHHHHHHHhc--CCCC----hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHH
Q 016114           59 VTSLLGMAKVLGS---IGRAKKAVEIYHRVITILELNR--GTES----ADLVLPLFSLGSLFIKEGKAVDAESVFSRILK  129 (395)
Q Consensus        59 ~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~--~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  129 (395)
                      ...+..+|.++..   .|++++|+..+++++...+...  .+++    |....++..+|.++...|++++|+..+++++.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  265 (514)
T 2gw1_A          186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE  265 (514)
T ss_dssp             HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            5566777777776   8999999999999998654433  2222    66788999999999999999999999999998


Q ss_pred             HHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHH
Q 016114          130 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL  209 (395)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  209 (395)
                      .        .|. ..++..+|.++...|++++|+..+++++..       .+..   ..++..+|.++...|++++|+..
T Consensus       266 ~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~  326 (514)
T 2gw1_A          266 L--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL-------DSNN---SSVYYHRGQMNFILQNYDQAGKD  326 (514)
T ss_dssp             H--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-------CTTC---THHHHHHHHHHHHTTCTTHHHHH
T ss_pred             h--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-------CcCC---HHHHHHHHHHHHHhCCHHHHHHH
Confidence            6        233 788999999999999999999999999874       2232   33568899999999999999999


Q ss_pred             HHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHH
Q 016114          210 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE  289 (395)
Q Consensus       210 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  289 (395)
                      +++++..        .|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++
T Consensus       327 ~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~  390 (514)
T 2gw1_A          327 FDKAKEL--------DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--------FPEAPEVPNFFAEILTDKNDFDK  390 (514)
T ss_dssp             HHHHHHT--------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHh--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cccCHHHHHHHHHHHHHCCCHHH
Confidence            9999875        2333457889999999999999999999999874        34455788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH---cCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Q 016114          290 AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR---LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYL  366 (395)
Q Consensus       290 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  366 (395)
                      |+.++++++......  +.......++..+|.++..   .|+++ +|+..+++++...        |....++..+|.++
T Consensus       391 A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~-~A~~~~~~a~~~~--------~~~~~~~~~la~~~  459 (514)
T 2gw1_A          391 ALKQYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFI-EATNLLEKASKLD--------PRSEQAKIGLAQMK  459 (514)
T ss_dssp             HHHHHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHH-HHHHHHHHHHHHC--------TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHH-HHHHHHHHHHHhC--------cccHHHHHHHHHHH
Confidence            999999999876322  1111113468899999999   99999 9999999999862        23356788999999


Q ss_pred             HHhcchhhhchhhHHHHHHHHHHHhh
Q 016114          367 DKLGRKEEKFPLKKRLSNLRMKYKQK  392 (395)
Q Consensus       367 ~~~g~~~~A~~~~~~a~~~~~~~~~~  392 (395)
                      ...|++++|...|++++++.++....
T Consensus       460 ~~~g~~~~A~~~~~~a~~~~~~~~~~  485 (514)
T 2gw1_A          460 LQQEDIDEAITLFEESADLARTMEEK  485 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhccccHHH
Confidence            99999999999999999988766543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=2.3e-28  Score=207.96  Aligned_cols=289  Identities=13%  Similarity=0.003  Sum_probs=225.8

Q ss_pred             HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 016114           58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  137 (395)
Q Consensus        58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  137 (395)
                      ....++.+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++.+       
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------  128 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL-------  128 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence            3456888999999999999999999999986        4566789999999999999999999999999987       


Q ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114          138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  217 (395)
Q Consensus       138 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  217 (395)
                       .|....++..+|.++...|++++|+..+++++++.................+..+|.++...|++++|+.++++++...
T Consensus       129 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  207 (365)
T 4eqf_A          129 -QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN  207 (365)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred             -CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence             3455678999999999999999999999999997543210000000123445667999999999999999999999862


Q ss_pred             HhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016114          218 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  297 (395)
Q Consensus       218 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  297 (395)
                           +.. ....++..+|.++...|++++|+..+++++.+        .|....++..+|.++...|++++|+..|+++
T Consensus       208 -----p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  273 (365)
T 4eqf_A          208 -----GDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAYTRA  273 (365)
T ss_dssp             -----CSS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----cCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                 121 13567889999999999999999999999984        4566778999999999999999999999999


Q ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHHHHHhcchh
Q 016114          298 LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE----VMLTLKKVVSYLDKLGRKE  373 (395)
Q Consensus       298 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~  373 (395)
                      +++.        |....++..+|.++...|+++ +|+.+|++++++.....++.++.    ...++..++.++..+|+.+
T Consensus       274 l~~~--------p~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  344 (365)
T 4eqf_A          274 LEIQ--------PGFIRSRYNLGISCINLGAYR-EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE  344 (365)
T ss_dssp             HHHC--------TTCHHHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred             HhcC--------CCchHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence            9863        334567899999999999999 99999999999987755443322    3578899999999999999


Q ss_pred             hhchhhHHHHHH
Q 016114          374 EKFPLKKRLSNL  385 (395)
Q Consensus       374 ~A~~~~~~a~~~  385 (395)
                      .|....++.+..
T Consensus       345 ~a~~~~~~~l~~  356 (365)
T 4eqf_A          345 LFQAANLGDLDV  356 (365)
T ss_dssp             HHHHHHTTCCGG
T ss_pred             HHHHHHHhhHHH
Confidence            988877765443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.96  E-value=2.1e-28  Score=208.44  Aligned_cols=286  Identities=16%  Similarity=0.155  Sum_probs=234.5

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      ...++.+|..+...|++++|+.+|+++++.        .|....++..+|.++...|++++|+..+++++..        
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------  127 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------  127 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------
Confidence            556789999999999999999999999875        2334567889999999999999999999999987        


Q ss_pred             ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH-------------HHHHHHHHHHHHCCCHHHHH
Q 016114           97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG-------------MAMCSLAHAKCANGNAEEAV  163 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-------------~~~~~la~~~~~~g~~~~A~  163 (395)
                      .|....++..+|.++...|++++|+..+++++...     ++.+...             .....++.++ ..|++++|+
T Consensus       128 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~  201 (368)
T 1fch_A          128 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-----PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVK  201 (368)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----TTTGGGCC---------------CTTHHHH-HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHH
Confidence            45667889999999999999999999999999763     2222111             1122466666 899999999


Q ss_pred             HHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh
Q 016114          164 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK  243 (395)
Q Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~  243 (395)
                      ..++++++..       |+.. ...++..+|.++...|++++|+.++++++.+        .|....++..+|.++...|
T Consensus       202 ~~~~~a~~~~-------p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g  265 (368)
T 1fch_A          202 ELFLAAVRLD-------PTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGN  265 (368)
T ss_dssp             HHHHHHHHHS-------TTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhC-------cCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHcC
Confidence            9999999863       2211 2456788999999999999999999999986        2444568899999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC---CChHHHHHHHHHH
Q 016114          244 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK---DSLPVGEALDCLV  320 (395)
Q Consensus       244 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~l~  320 (395)
                      ++++|+..+++++.+        .|....++..+|.++...|++++|+.++++++.+.....++   .++....++..++
T Consensus       266 ~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~  337 (368)
T 1fch_A          266 QSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR  337 (368)
T ss_dssp             CHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHH
Confidence            999999999999984        45667889999999999999999999999999987443111   1233367899999


Q ss_pred             HHHHHcCCchhHHHHHHHHHHHHHHhccC
Q 016114          321 SIQTRLGEDDTKLLELLKRVLRIQEREFG  349 (395)
Q Consensus       321 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~  349 (395)
                      .++...|+++ +|...++++++.+.+.++
T Consensus       338 ~~~~~~g~~~-~A~~~~~~~l~~~~~~~~  365 (368)
T 1fch_A          338 LALSMLGQSD-AYGAADARDLSTLLTMFG  365 (368)
T ss_dssp             HHHHHHTCGG-GHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHhCChH-hHHHhHHHHHHHHHHhcC
Confidence            9999999999 999999999988877654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.96  E-value=8.2e-28  Score=210.51  Aligned_cols=295  Identities=13%  Similarity=0.103  Sum_probs=233.0

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      +|....++..+|.++...|++++|+..|+++++..        |....++..+|.++...|++++|+..|++++..    
T Consensus        56 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----  123 (450)
T 2y4t_A           56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS----  123 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----
T ss_pred             CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence            34457788999999999999999999999999862        333567889999999999999999999999874    


Q ss_pred             cCCCChhhhhh------------HHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHH
Q 016114           93 RGTESADLVLP------------LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE  160 (395)
Q Consensus        93 ~~~~~~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  160 (395)
                       .++.+....+            +..+|.++...|++++|+..+++++..        .|....++..+|.+|...|+++
T Consensus       124 -~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~  194 (450)
T 2y4t_A          124 -NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--------CVWDAELRELRAECFIKEGEPR  194 (450)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGG
T ss_pred             -CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHH
Confidence             2222210133            344578899999999999999999876        3444567899999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHH--------
Q 016114          161 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL--------  232 (395)
Q Consensus       161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------  232 (395)
                      +|+..++++++..       ++.   ..++..+|.++...|++++|+..+++++...     ++++.....+        
T Consensus       195 ~A~~~~~~~~~~~-------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~  259 (450)
T 2y4t_A          195 KAISDLKAASKLK-------NDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNK  259 (450)
T ss_dssp             GGHHHHHHHHHHH-------CSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHHHH
Confidence            9999999999864       222   3567889999999999999999999998752     2333322222        


Q ss_pred             -HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 016114          233 -LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL  310 (395)
Q Consensus       233 -~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  310 (395)
                       ..+|.++...|++++|+.+|++++.+     .++++. ....+..+|.++...|++++|+..+++++...        |
T Consensus       260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------p  326 (450)
T 2y4t_A          260 LIESAEELIRDGRYTDATSKYESVMKT-----EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--------P  326 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------c
Confidence             34499999999999999999999874     223222 24578899999999999999999999998753        3


Q ss_pred             HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 016114          311 PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSY  365 (395)
Q Consensus       311 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  365 (395)
                      ....++..+|.++...|+++ +|+..|++++++     .+++   ..++..++.+
T Consensus       327 ~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~-----~p~~---~~~~~~l~~~  372 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIEEMYD-EAIQDYETAQEH-----NEND---QQIREGLEKA  372 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTT-----SSSC---HHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHh-----Ccch---HHHHHHHHHH
Confidence            33467899999999999999 999999999974     2344   3455666633

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.96  E-value=1.5e-26  Score=197.37  Aligned_cols=270  Identities=13%  Similarity=0.062  Sum_probs=224.9

Q ss_pred             HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 016114           58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  137 (395)
Q Consensus        58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  137 (395)
                      ....++..|..+...|++++|+.+|++++.+....  ++.+..+.++..+|.+|...|++++|+.++++++++.++.. .
T Consensus       100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~  176 (378)
T 3q15_A          100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-L  176 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-T
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-C
Confidence            34467788999999999999999999999987654  35677889999999999999999999999999999987642 1


Q ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114          138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  217 (395)
Q Consensus       138 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  217 (395)
                      ..+..+.++.++|.+|...|++++|+.++++++++.++.    +++.....++.++|.+|...|++++|+.++++++.+.
T Consensus       177 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~  252 (378)
T 3q15_A          177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI----QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS  252 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            134578899999999999999999999999999998763    4556778889999999999999999999999999988


Q ss_pred             HhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016114          218 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  297 (395)
Q Consensus       218 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  297 (395)
                      +...   +|....++.++|.++...|++++|..++++++.+..+.   .++.....+..++.++...|+.    ..+.++
T Consensus       253 ~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ly~~~~~~----~~~~~a  322 (378)
T 3q15_A          253 REKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAVYKETVDE----RKIHDL  322 (378)
T ss_dssp             HHHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHHHSSSCCH----HHHHHH
T ss_pred             HhhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcH----HHHHHH
Confidence            7653   45568899999999999999999999999999975443   2345555678889999988883    333444


Q ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhc
Q 016114          298 LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQERE  347 (395)
Q Consensus       298 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~  347 (395)
                      +...++.  ...+.....+..+|.++...|+++ +|..+|++++++.+++
T Consensus       323 l~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~-~A~~~~~~al~~~~~~  369 (378)
T 3q15_A          323 LSYFEKK--NLHAYIEACARSAAAVFESSCHFE-QAAAFYRKVLKAQEDI  369 (378)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHhC--CChhHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHH
Confidence            4444332  455677778889999999999999 9999999999987664

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.96  E-value=2.6e-27  Score=193.99  Aligned_cols=270  Identities=21%  Similarity=0.177  Sum_probs=227.1

Q ss_pred             HHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHH
Q 016114          112 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI  191 (395)
Q Consensus       112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  191 (395)
                      ...|++++|+.+++++++++.+..+.++|....++..+|.++...|++++|+.++++++++....  .+++++....++.
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~   89 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKT--LGKDHPAVAATLN   89 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCTTCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH--cCCcchHHHHHHH
Confidence            45789999999999999999999888889999999999999999999999999999999998765  4567788888999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchH
Q 016114          192 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS  271 (395)
Q Consensus       192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  271 (395)
                      ++|.++...|++++|+.++++++.+.++..++++|....++.++|.++...|++++|+.++++++.+.....++++|...
T Consensus        90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  169 (283)
T 3edt_B           90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA  169 (283)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            99999999999999999999999999998888889999999999999999999999999999999998888888888899


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCC
Q 016114          272 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIA-FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS  350 (395)
Q Consensus       272 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  350 (395)
                      .++..+|.++...|++++|+.++++++.+.... .+...+.....+..++......+... .+ ..+.++...... .+.
T Consensus       170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~  246 (283)
T 3edt_B          170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR-DS-APYGEYGSWYKA-CKV  246 (283)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC-C-------------C-CCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh-HH-HHHHHHHHHHHh-cCC
Confidence            999999999999999999999999999986553 22334444455666777766666554 33 345555555544 456


Q ss_pred             CCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114          351 ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  386 (395)
Q Consensus       351 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  386 (395)
                      .+|....++..+|.+|..+|++++|..++++++++.
T Consensus       247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            779999999999999999999999999999998753

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.96  E-value=5.6e-27  Score=198.88  Aligned_cols=298  Identities=13%  Similarity=0.108  Sum_probs=236.9

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      +|....++..+|.++...|++++|+..++++++..        |....++..+|.++...|++++|+..+++++..    
T Consensus        33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----  100 (359)
T 3ieg_A           33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS----  100 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS----
T ss_pred             CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc----
Confidence            34456788999999999999999999999999862        233467899999999999999999999999875    


Q ss_pred             cCCCCh---hhhhhHHhH------------HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC
Q 016114           93 RGTESA---DLVLPLFSL------------GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  157 (395)
Q Consensus        93 ~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  157 (395)
                          .|   ....++..+            |.++...|++++|+..+++++..        .|....++..+|.++...|
T Consensus       101 ----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  168 (359)
T 3ieg_A          101 ----NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELRELRAECFIKEG  168 (359)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred             ----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHCC
Confidence                33   444445444            79999999999999999999986        3444578899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHH------
Q 016114          158 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH------  231 (395)
Q Consensus       158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------  231 (395)
                      ++++|+..++++++.       .++.   ..++..+|.++...|++++|+..+++++...     ++++.....      
T Consensus       169 ~~~~A~~~~~~~~~~-------~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~  233 (359)
T 3ieg_A          169 EPRKAISDLKAASKL-------KSDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKK  233 (359)
T ss_dssp             CHHHHHHHHHHHHTT-------CSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHH
Confidence            999999999999874       2333   3567899999999999999999999998763     233332222      


Q ss_pred             ---HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114          232 ---LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  307 (395)
Q Consensus       232 ---~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  307 (395)
                         ...+|.++...|++++|+..+++++...     ++++. ...++..+|.++...|++++|+..++++++..     +
T Consensus       234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~  303 (359)
T 3ieg_A          234 LNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-----P  303 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----c
Confidence               3355899999999999999999998842     22222 23457789999999999999999999998862     3


Q ss_pred             CChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcc
Q 016114          308 DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR  371 (395)
Q Consensus       308 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  371 (395)
                      +   ...++..+|.++...|+++ +|+..|++++++     .|++   ..+...++.+....++
T Consensus       304 ~---~~~~~~~~~~~~~~~g~~~-~A~~~~~~a~~~-----~p~~---~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          304 D---NVNALKDRAEAYLIEEMYD-EAIQDYEAAQEH-----NEND---QQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             T---CHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTT-----CTTC---HHHHHHHHHHHHHHHH
T ss_pred             c---cHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhc-----CCCC---hHHHHHHHHHHHHHHH
Confidence            3   3457899999999999999 999999999974     2334   4456666666665543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.96  E-value=9.5e-28  Score=201.25  Aligned_cols=279  Identities=14%  Similarity=0.056  Sum_probs=234.5

Q ss_pred             HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114           60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  139 (395)
Q Consensus        60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  139 (395)
                      ..+..+|..+...|++++|+..+++++..        .|....++..++.++...|++++|...+++++..        .
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~   86 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--------Y   86 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--------C
Confidence            45677899999999999999999999875        4555677888899999999999999999999986        3


Q ss_pred             hhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114          140 GRVGMAMCSLAHAKCANG-NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  218 (395)
Q Consensus       140 ~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  218 (395)
                      |....++..+|.++...| ++++|+.++++++..       .+..   ..++..+|.++...|++++|+..+++++... 
T Consensus        87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-  155 (330)
T 3hym_B           87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL-------EKTY---GPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-  155 (330)
T ss_dssp             TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT-------CTTC---THHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-
T ss_pred             cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-------CCcc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-
Confidence            444567899999999999 999999999999874       2232   3456889999999999999999999999863 


Q ss_pred             hhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016114          219 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  298 (395)
Q Consensus       219 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  298 (395)
                             |....++..+|.++...|++++|+..+++++.        ..|....++..+|.++...|++++|+.++++++
T Consensus       156 -------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  220 (330)
T 3hym_B          156 -------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--------IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL  220 (330)
T ss_dssp             -------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                   22334577799999999999999999999987        346667889999999999999999999999999


Q ss_pred             HHHHHHcCCCC-hHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhch
Q 016114          299 YIREIAFGKDS-LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFP  377 (395)
Q Consensus       299 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  377 (395)
                      ........... +....++..+|.++...|+++ +|+.++++++++.        |....++..+|.++...|++++|..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~  291 (330)
T 3hym_B          221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA-EALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVD  291 (330)
T ss_dssp             HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHhhhccccccccHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHHHHHH
Confidence            98755432222 344567889999999999999 9999999999863        2335678999999999999999999


Q ss_pred             hhHHHHHHHHHH
Q 016114          378 LKKRLSNLRMKY  389 (395)
Q Consensus       378 ~~~~a~~~~~~~  389 (395)
                      ++++++++.++.
T Consensus       292 ~~~~al~~~p~~  303 (330)
T 3hym_B          292 YFHTALGLRRDD  303 (330)
T ss_dssp             HHHTTTTTCSCC
T ss_pred             HHHHHHccCCCc
Confidence            999998876543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.96  E-value=5.6e-27  Score=212.66  Aligned_cols=293  Identities=14%  Similarity=0.137  Sum_probs=243.0

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      |....++..+|..+...|++++|+.+|++++...        |....++..++.++...|++++|...+++++..     
T Consensus       302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----  368 (597)
T 2xpi_A          302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-----  368 (597)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----
Confidence            4456778899999999999999999999998752        223345778899999999999999999998864     


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                         .|....++..+|.+|...|++++|..+|++++++        .|....++..++.++...|++++|+..|+++++..
T Consensus       369 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          369 ---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             ---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             ---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence               4556788899999999999999999999999876        34445688999999999999999999999998742


Q ss_pred             HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114          174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  253 (395)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  253 (395)
                             ++.   ..++..++.++...|++++|+.+|+++++..        |....++..+|.++...|++++|+.+|+
T Consensus       438 -------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~  499 (597)
T 2xpi_A          438 -------QGT---HLPYLFLGMQHMQLGNILLANEYLQSSYALF--------QYDPLLLNELGVVAFNKSDMQTAINHFQ  499 (597)
T ss_dssp             -------TTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -------ccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                   222   3456789999999999999999999998752        2334678899999999999999999999


Q ss_pred             HHHHHHHHhhCCCCcc-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhH
Q 016114          254 ICLDIMTKTVGPDDQS-ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK  332 (395)
Q Consensus       254 ~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  332 (395)
                      ++++.....  +.+|. ...++..+|.++...|++++|+..++++++..     +++   ..++..++.++...|+++ +
T Consensus       500 ~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~---~~~~~~l~~~~~~~g~~~-~  568 (597)
T 2xpi_A          500 NALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-----TND---ANVHTAIALVYLHKKIPG-L  568 (597)
T ss_dssp             HHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----SCC---HHHHHHHHHHHHHTTCHH-H
T ss_pred             HHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCC---hHHHHHHHHHHHHhCCHH-H
Confidence            999875543  23454 37889999999999999999999999998753     333   457899999999999999 9


Q ss_pred             HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Q 016114          333 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLD  367 (395)
Q Consensus       333 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  367 (395)
                      |..+|++++++     .+++   ..++..++.+|.
T Consensus       569 A~~~~~~~l~~-----~p~~---~~~~~~l~~~~~  595 (597)
T 2xpi_A          569 AITHLHESLAI-----SPNE---IMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHHH-----CTTC---HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhc-----CCCC---hHHHHHHHHHHh
Confidence            99999999986     2333   456777777653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.96  E-value=1.8e-26  Score=189.05  Aligned_cols=270  Identities=20%  Similarity=0.187  Sum_probs=228.4

Q ss_pred             HHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 016114           69 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS  148 (395)
Q Consensus        69 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  148 (395)
                      ....|++++|+.++++++++..+..+.++|..+.++..+|.++...|++++|+.++++++.+.+...+++++....++..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            45689999999999999999999888888999999999999999999999999999999999999888888999999999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhH
Q 016114          149 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF  228 (395)
Q Consensus       149 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  228 (395)
                      +|.++...|++++|+.++++++.+.++.  .+++++....++.++|.++...|++++|+.++++++.+.....+++++..
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  168 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKV--LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV  168 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHH--cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            9999999999999999999999998765  45566778889999999999999999999999999999988888888999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh-CCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114          229 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV-GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  307 (395)
Q Consensus       229 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  307 (395)
                      ..++.++|.++...|++++|+.++++++.+..... +...+.....+..++..+...+....+.. +..+..... ..+.
T Consensus       169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~  246 (283)
T 3edt_B          169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYK-ACKV  246 (283)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------------CCCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHH-hcCC
Confidence            99999999999999999999999999999865543 33355566677777777776666655544 344444333 3456


Q ss_pred             CChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114          308 DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  343 (395)
Q Consensus       308 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  343 (395)
                      +++....++..+|.++...|+++ +|..++++++++
T Consensus       247 ~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~  281 (283)
T 3edt_B          247 DSPTVNTTLRSLGALYRRQGKLE-AAHTLEDCASRN  281 (283)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh
Confidence            77888999999999999999999 999999999864

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.96  E-value=2.2e-27  Score=209.11  Aligned_cols=313  Identities=12%  Similarity=0.041  Sum_probs=232.2

Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcC-CCChhhhhhHHhH
Q 016114           29 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG-TESADLVLPLFSL  107 (395)
Q Consensus        29 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l  107 (395)
                      ..++.+.++..+++.+......  .+++..+..++.+|.++...|++++|++.|++|+++.+...+ ..++....++.++
T Consensus        23 ~l~~~~~~l~~~e~~~~~~~~~--~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nl  100 (472)
T 4g1t_A           23 NLMEGENSLDDFEDKVFYRTEF--QNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNY  100 (472)
T ss_dssp             CTTTTCCCHHHHHHHHHHHTTS--CC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence            3456666777777666543332  234456778899999999999999999999999999877643 2367778899999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHhcccCCCCchH
Q 016114          108 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA--NGNAEEAVELYKKALRVIKDSNYMSLDDSI  185 (395)
Q Consensus       108 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  185 (395)
                      |.+|..+|++++|+.++++++.+.+...++.++..+.++.++|.++..  .+++++|+.+|++++++       .|+++.
T Consensus       101 a~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-------~p~~~~  173 (472)
T 4g1t_A          101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-------KPKNPE  173 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-------STTCHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-------CCCCHH
Confidence            999999999999999999999999887766677777888888877665  45799999999999986       345544


Q ss_pred             HHHHHHHHHHH---HHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHH----HhhhcHHHHHHHHHHHHHH
Q 016114          186 MENMRIDLAEL---LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY----SRSKNFVEAERLLRICLDI  258 (395)
Q Consensus       186 ~~~~~~~la~~---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~----~~~~~~~~A~~~~~~a~~~  258 (395)
                      ..   ..++.+   +...++.++|+..+++++++        +|....++..+|..+    ...|++++|..++++++..
T Consensus       174 ~~---~~~~~~~~~l~~~~~~~~al~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~  242 (472)
T 4g1t_A          174 FT---SGLAIASYRLDNWPPSQNAIDPLRQAIRL--------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK  242 (472)
T ss_dssp             HH---HHHHHHHHHHHHSCCCCCTHHHHHHHHHH--------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred             HH---HHHHHHHHHhcCchHHHHHHHHHHHHhhc--------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            33   445544   45568889999999999986        233334555565544    4557888999999999873


Q ss_pred             HHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC----------
Q 016114          259 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE----------  328 (395)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------  328 (395)
                              +|....++.++|.+|...|++++|+..++++++..        |....++..+|.+|...+.          
T Consensus       243 --------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~y~~~~~~~~~~~~~~~  306 (472)
T 4g1t_A          243 --------APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--------PNNAYLHCQIGCCYRAKVFQVMNLRENGM  306 (472)
T ss_dssp             --------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             --------CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------CChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence                    56677889999999999999999999999998854        4445567788887754321          


Q ss_pred             ---------chhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114          329 ---------DDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  386 (395)
Q Consensus       329 ---------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  386 (395)
                               ++ +|+..+++++++        +|....++..+|.++...|++++|+.+|++++.+.
T Consensus       307 ~~~~~~~~~~~-~A~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~  364 (472)
T 4g1t_A          307 YGKRKLLELIG-HAVAHLKKADEA--------NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE  364 (472)
T ss_dssp             -CHHHHHHHHH-HHHHHHHHHHHH--------CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhhHH-HHHHHHHHHhhc--------CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence                     23 455555555543        23345567888999999999999999999988653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.96  E-value=9.1e-25  Score=186.27  Aligned_cols=312  Identities=11%  Similarity=-0.014  Sum_probs=248.1

Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcC
Q 016114           15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG   94 (395)
Q Consensus        15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   94 (395)
                      ..+.++..+|.++...|++++|+.++++++...+   ..+......++..+|.++...|++++|...+++++.+..... 
T Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-   87 (373)
T 1hz4_A           12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELP---PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD-   87 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC-
Confidence            3467778899999999999999999999988642   122334667888999999999999999999999999887642 


Q ss_pred             CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114           95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  174 (395)
Q Consensus        95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  174 (395)
                       +......++..+|.++...|++++|+.++++++.+.+...++.++....++.++|.++...|++++|..++++++.+..
T Consensus        88 -~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           88 -VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             -cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence             3344566788999999999999999999999999988765444577788899999999999999999999999999865


Q ss_pred             hcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHH--HHHHHHHHHhhhcHHHHHHHH
Q 016114          175 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH--LLNLAASYSRSKNFVEAERLL  252 (395)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~  252 (395)
                      ..     .++....++.++|.++...|++++|..++++++.+.....   .+.....  ...++.++...|++++|..++
T Consensus       167 ~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  238 (373)
T 1hz4_A          167 SY-----QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK---YHSDWISNANKVRVIYWQMTGDKAAAANWL  238 (373)
T ss_dssp             TS-----CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cc-----CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC---cchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            42     1222456788999999999999999999999998764321   2211112  224556688999999999999


Q ss_pred             HHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhH
Q 016114          253 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK  332 (395)
Q Consensus       253 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  332 (395)
                      ++++...    ..........+..++.++...|++++|...+++++......  +..+....++..++.++...|+++ +
T Consensus       239 ~~a~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~  311 (373)
T 1hz4_A          239 RHTAKPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKS-D  311 (373)
T ss_dssp             HHSCCCC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHH-H
T ss_pred             HhCCCCC----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHH-H
Confidence            8886521    11112223456789999999999999999999999987663  223445568888999999999999 9


Q ss_pred             HHHHHHHHHHHHHh
Q 016114          333 LLELLKRVLRIQER  346 (395)
Q Consensus       333 A~~~~~~al~~~~~  346 (395)
                      |...+++++.+...
T Consensus       312 A~~~l~~al~~~~~  325 (373)
T 1hz4_A          312 AQRVLLDALKLANR  325 (373)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999998764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.95  E-value=7e-27  Score=195.69  Aligned_cols=288  Identities=14%  Similarity=0.106  Sum_probs=231.4

Q ss_pred             CCcH-HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Q 016114           11 DDEP-LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL   89 (395)
Q Consensus        11 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   89 (395)
                      +++| .....++.+|..+...|++++|+.+|+++++..        |....++..+|.++...|++++|+..+++++.. 
T Consensus        14 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-   84 (327)
T 3cv0_A           14 ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAA--------PEREEAWRSLGLTQAENEKDGLAIIALNHARML-   84 (327)
T ss_dssp             SSCGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             hccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence            3344 455667899999999999999999999998852        334567888999999999999999999999987 


Q ss_pred             HHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH--------------HH-HHH
Q 016114           90 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL--------------AH-AKC  154 (395)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l--------------a~-~~~  154 (395)
                             .|....++..+|.++...|++++|+..+++++...     +..+.   .+..+              +. ++.
T Consensus        85 -------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  149 (327)
T 3cv0_A           85 -------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-----PQYEQ---LGSVNLQADVDIDDLNVQSEDFFFA  149 (327)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----TTTTT---C--------------------CCTT
T ss_pred             -------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccHH---HHHHHhHHHHHHHHHHHHHHhHHHH
Confidence                   45567789999999999999999999999998762     22221   22222              44 578


Q ss_pred             HCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHH
Q 016114          155 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN  234 (395)
Q Consensus       155 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  234 (395)
                      ..|++++|+.+++++++..       ++.   ..++..+|.++...|++++|+.++++++..        .|....++..
T Consensus       150 ~~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~  211 (327)
T 3cv0_A          150 APNEYRECRTLLHAALEMN-------PND---AQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNK  211 (327)
T ss_dssp             SHHHHHHHHHHHHHHHHHS-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhhC-------CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHH
Confidence            8899999999999998852       222   356788999999999999999999999875        2344567889


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC----Ch
Q 016114          235 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD----SL  310 (395)
Q Consensus       235 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~  310 (395)
                      +|.++...|++++|+..+++++..        .|....++..+|.++...|++++|...+++++.......++.    ..
T Consensus       212 l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  283 (327)
T 3cv0_A          212 LGATLANGNRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASRE  283 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhh
Confidence            999999999999999999999884        355667889999999999999999999999998763211111    11


Q ss_pred             HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccC
Q 016114          311 PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  349 (395)
Q Consensus       311 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  349 (395)
                      ....++..++.++...|+++ +|...++++++.+...++
T Consensus       284 ~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~l~~~~~~~~  321 (327)
T 3cv0_A          284 ATRSMWDFFRMLLNVMNRPD-LVELTYAQNVEPFAKEFG  321 (327)
T ss_dssp             HHHHHHHHHHHHHHHTTCHH-HHHHHTTCCSHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhcchhhh
Confidence            15678899999999999999 999999999988776544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.95  E-value=2.6e-26  Score=192.24  Aligned_cols=284  Identities=16%  Similarity=0.065  Sum_probs=230.3

Q ss_pred             HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 016114           58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  137 (395)
Q Consensus        58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  137 (395)
                      ....+..+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|..++++++..       
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------   84 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIALNHARML-------   84 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence            4456788999999999999999999999886        4566788899999999999999999999999986       


Q ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHH----------HHHH-HH-HHHHcCChHH
Q 016114          138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM----------RIDL-AE-LLHIVGRGQE  205 (395)
Q Consensus       138 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~----------~~~l-a~-~~~~~g~~~~  205 (395)
                       .|....++..+|.++...|++++|+..+++++....       ........          ...+ +. ++...|++++
T Consensus        85 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (327)
T 3cv0_A           85 -DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP-------QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE  156 (327)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-------TTTTC--------------------CCTTSHHHHHH
T ss_pred             -CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHH
Confidence             344456889999999999999999999999987532       22111100          0112 44 5888899999


Q ss_pred             HHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC
Q 016114          206 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN  285 (395)
Q Consensus       206 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  285 (395)
                      |+.++++++...        |....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|
T Consensus       157 A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~  220 (327)
T 3cv0_A          157 CRTLLHAALEMN--------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGN  220 (327)
T ss_dssp             HHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcC
Confidence            999999998752        334577889999999999999999999999874        3556678899999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCH----HHHHHHHH
Q 016114          286 RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE----EVMLTLKK  361 (395)
Q Consensus       286 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~  361 (395)
                      ++++|+..++++++..     ++   ...++..+|.++...|+++ +|+..+++++.+.....+....    ....++..
T Consensus       221 ~~~~A~~~~~~a~~~~-----~~---~~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  291 (327)
T 3cv0_A          221 RPQEALDAYNRALDIN-----PG---YVRVMYNMAVSYSNMSQYD-LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDF  291 (327)
T ss_dssp             CHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcC-----CC---CHHHHHHHHHHHHHhccHH-HHHHHHHHHHHhCCccccccccchhhcCHHHHHH
Confidence            9999999999998753     33   3457889999999999999 9999999999886542221111    15788999


Q ss_pred             HHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          362 VVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       362 la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      ++.++...|++++|...++++++..++.
T Consensus       292 l~~~~~~~g~~~~A~~~~~~~l~~~~~~  319 (327)
T 3cv0_A          292 FRMLLNVMNRPDLVELTYAQNVEPFAKE  319 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence            9999999999999999999999887764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.95  E-value=3.5e-24  Score=182.61  Aligned_cols=313  Identities=12%  Similarity=0.005  Sum_probs=245.1

Q ss_pred             HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114           57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  136 (395)
                      ....+...+|.++...|++++|...+++++....   ..+......++..+|.++...|++++|...+++++.+.+..  
T Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--   86 (373)
T 1hz4_A           12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELP---PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--   86 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--
Confidence            4456777889999999999999999999988631   11122345678899999999999999999999999998764  


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                      .+......++.++|.++...|++++|+.++++++.+....  ..+.++....++.++|.++...|++++|..++++++.+
T Consensus        87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  164 (373)
T 1hz4_A           87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ--HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV  164 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--ccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            2233456778899999999999999999999999998764  22333566777889999999999999999999999988


Q ss_pred             HHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHH--HHHHHHHHhcCChHHHHHHH
Q 016114          217 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM--LHLGITLYHLNRDKEAEKLV  294 (395)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~  294 (395)
                      .....   ++....++..+|.++...|++++|..++++++.+....   ..+......  ..++.++...|++++|..++
T Consensus       165 ~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  238 (373)
T 1hz4_A          165 LSSYQ---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG---KYHSDWISNANKVRVIYWQMTGDKAAAANWL  238 (373)
T ss_dssp             TTTSC---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhccC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CcchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            65432   22345778899999999999999999999998864332   122111121  24556688999999999999


Q ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhh
Q 016114          295 LEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE  374 (395)
Q Consensus       295 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  374 (395)
                      ++++...    ..........+..++.++...|+++ +|...+++++......  ...+....++..+|.++...|++++
T Consensus       239 ~~a~~~~----~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~  311 (373)
T 1hz4_A          239 RHTAKPE----FANNHFLQGQWRNIARAQILLGEFE-PAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSD  311 (373)
T ss_dssp             HHSCCCC----CTTCGGGHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HhCCCCC----CCcchhhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHHH
Confidence            9887532    1111222335678999999999999 9999999999987763  2234555688999999999999999


Q ss_pred             hchhhHHHHHHHHHH
Q 016114          375 KFPLKKRLSNLRMKY  389 (395)
Q Consensus       375 A~~~~~~a~~~~~~~  389 (395)
                      |...+++++.+.+..
T Consensus       312 A~~~l~~al~~~~~~  326 (373)
T 1hz4_A          312 AQRVLLDALKLANRT  326 (373)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999987754

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.5e-24  Score=172.26  Aligned_cols=254  Identities=12%  Similarity=0.026  Sum_probs=212.0

Q ss_pred             HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114           57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  136 (395)
                      ..+..+..+|.++...|++++|+.++++++...         ....++..+|.++...|++++|+.++++++.+.... +
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~   72 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-R   72 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-c
Confidence            456788999999999999999999999999872         346789999999999999999999999999987653 2


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                      ++.+....++..+|.++...|++++|+.++++++.+.       +.           +.++...|++++|+..+++++. 
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~-----------~~~~~~~~~~~~a~~~~~~~~~-  133 (258)
T 3uq3_A           73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-------RT-----------ADILTKLRNAEKELKKAEAEAY-  133 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CC-----------HHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------ch-----------hHHHHHHhHHHHHHHHHHHHHH-
Confidence            2334457899999999999999999999999999852       12           3567778899999999999887 


Q ss_pred             HHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016114          217 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  296 (395)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  296 (395)
                             ..|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++
T Consensus       134 -------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          134 -------VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -------cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                   35778889999999999999999999999999984        355567899999999999999999999999


Q ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 016114          297 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSY  365 (395)
Q Consensus       297 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  365 (395)
                      +++..     +   ....++..+|.++...|+++ +|..++++++++..+..  ..|....++..++.+
T Consensus       199 al~~~-----~---~~~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          199 AIEKD-----P---NFVRAYIRKATAQIAVKEYA-SALETLDAARTKDAEVN--NGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHC-----T---TCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHT
T ss_pred             HHHhC-----H---HHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHhChhhc--CCCchHHHHHHHHHh
Confidence            98853     3   33467889999999999999 99999999999875532  234445555555543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.8e-24  Score=171.65  Aligned_cols=254  Identities=11%  Similarity=0.034  Sum_probs=210.0

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      +..+..+..+|.++...|++++|+.+|+++++..      +.   ..++..+|.++...|++++|+..+++++.+.....
T Consensus         2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~------~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~   72 (258)
T 3uq3_A            2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH------KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR   72 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh------cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence            4567889999999999999999999999999873      11   35788999999999999999999999999865531


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                       ++.+....++..+|.++...|++++|+.++++++.+.        +.        +.++...|++++|+..+++++.. 
T Consensus        73 -~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~--------~~~~~~~~~~~~a~~~~~~~~~~-  134 (258)
T 3uq3_A           73 -ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--------RT--------ADILTKLRNAEKELKKAEAEAYV-  134 (258)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CC--------HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             -cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------ch--------hHHHHHHhHHHHHHHHHHHHHHc-
Confidence             2334447899999999999999999999999999862        21        35677778899999999998873 


Q ss_pred             HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114          174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  253 (395)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  253 (395)
                               .+....++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|+..++
T Consensus       135 ---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~  197 (258)
T 3uq3_A          135 ---------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCN  197 (258)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ---------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                     23446678999999999999999999999999862        3345788999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 016114          254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS  321 (395)
Q Consensus       254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  321 (395)
                      +++..        .|....++..+|.++...|++++|..++++++++..+..  ..|....+...++.
T Consensus       198 ~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          198 KAIEK--------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYK  255 (258)
T ss_dssp             HHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHH
T ss_pred             HHHHh--------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHH
Confidence            99884        455678899999999999999999999999999876542  33444444444443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.94  E-value=1.4e-25  Score=182.70  Aligned_cols=251  Identities=9%  Similarity=0.003  Sum_probs=208.2

Q ss_pred             hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114          102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  181 (395)
Q Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  181 (395)
                      ..+...|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+..++++++.       ++
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~   68 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-------VN   68 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-------SC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------cC
Confidence            46778999999999999999999999875        2333447889999999999999999999999872       23


Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114          182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  261 (395)
Q Consensus       182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  261 (395)
                      ++.....++..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|+.++++++.+   
T Consensus        69 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---  137 (272)
T 3u4t_A           69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---  137 (272)
T ss_dssp             TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---
T ss_pred             chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---
Confidence            444446678999999999999999999999999862        334467899999999999999999999998863   


Q ss_pred             hhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC---chhHHHHHHH
Q 016114          262 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE---DDTKLLELLK  338 (395)
Q Consensus       262 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~A~~~~~  338 (395)
                           .|....++..+|......+++++|+..++++++..     +++   ..++..+|.++...|+   ++ +|+..++
T Consensus       138 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----p~~---~~~~~~~~~~~~~~~~~~~~~-~A~~~~~  203 (272)
T 3u4t_A          138 -----TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-----PNI---YIGYLWRARANAAQDPDTKQG-LAKPYYE  203 (272)
T ss_dssp             -----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC---HHHHHHHHHHHHHHSTTCSSC-TTHHHHH
T ss_pred             -----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ccc---hHHHHHHHHHHHHcCcchhhH-HHHHHHH
Confidence                 56778889999944555569999999999998864     333   4678889999999998   88 8999999


Q ss_pred             HHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHhh
Q 016114          339 RVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  392 (395)
Q Consensus       339 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  392 (395)
                      +++++......+..+....++..+|.+|...|++++|+.+|++++++.|+....
T Consensus       204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a  257 (272)
T 3u4t_A          204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA  257 (272)
T ss_dssp             HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHH
Confidence            999998664332234456889999999999999999999999999998775543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.94  E-value=8.2e-25  Score=184.32  Aligned_cols=256  Identities=9%  Similarity=-0.042  Sum_probs=213.3

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCc-hhHHHHHHHHHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-AKKAVEIYHRVITILE   90 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~   90 (395)
                      .+|....++..+|.++...|++++|+..+++++.+        .|....+++.+|.++...|+ +++|+..|++++.+  
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--  161 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--  161 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--
Confidence            46889999999999999999999999999999987        34556789999999999997 99999999999997  


Q ss_pred             HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114           91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  170 (395)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  170 (395)
                            .|....+++++|.++...|++++|+..|++++.+        +|....++.++|.++...|++++|+.++++++
T Consensus       162 ------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al  227 (382)
T 2h6f_A          162 ------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL  227 (382)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence                  6778899999999999999999999999999987        56667889999999999999999999999999


Q ss_pred             HHHHhcccCCCCchHHHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh-
Q 016114          171 RVIKDSNYMSLDDSIMENMRIDLAELLHI-VGRGQEG-----RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-  243 (395)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-  243 (395)
                      ++.       ++.   ..++.++|.++.. .|.+++|     +.++++++.+        .|....++.+++.++...| 
T Consensus       228 ~l~-------P~~---~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~  289 (382)
T 2h6f_A          228 KED-------VRN---NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGL  289 (382)
T ss_dssp             HHC-------TTC---HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCG
T ss_pred             HhC-------CCC---HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCc
Confidence            963       232   4577999999999 5665888     5889999886        3555678999999999988 


Q ss_pred             -cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC--------C-hHHHHHHHHHH-HHHHHHHcCCCChHH
Q 016114          244 -NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN--------R-DKEAEKLVLEA-LYIREIAFGKDSLPV  312 (395)
Q Consensus       244 -~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~~~~~~~~~~~~  312 (395)
                       ++++|++.++++ +        ..|....++..+|.+|..+|        + +++|+.+|+++ ++        -+|..
T Consensus       290 ~~~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--------~DP~r  352 (382)
T 2h6f_A          290 SKYPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--------KDTIR  352 (382)
T ss_dssp             GGCHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--------TCGGG
T ss_pred             cchHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------hCchh
Confidence             688888877654 2        35677788899999999985        2 47888888776 54        23555


Q ss_pred             HHHHHHHHHHHHHc
Q 016114          313 GEALDCLVSIQTRL  326 (395)
Q Consensus       313 ~~~~~~l~~~~~~~  326 (395)
                      ...|..++..+..+
T Consensus       353 ~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          353 KEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            56677777666543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.94  E-value=7.2e-25  Score=178.47  Aligned_cols=261  Identities=11%  Similarity=0.037  Sum_probs=208.2

Q ss_pred             HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114           60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  139 (395)
Q Consensus        60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  139 (395)
                      ..+...|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+..+++++..     +++.
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~   70 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNAT   70 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCch
Confidence            35678899999999999999999999875        4555678999999999999999999999999873     2223


Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 016114          140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  219 (395)
Q Consensus       140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  219 (395)
                      .....++..+|.++...|++++|+.+++++++..       +..   ..++..+|.++...|++++|+.++++++..   
T Consensus        71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---  137 (272)
T 3u4t_A           71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-------TTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---  137 (272)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCCS---
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------ccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhhc---
Confidence            3346789999999999999999999999999863       222   246789999999999999999999998764   


Q ss_pred             hhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCC---hHHHHHHHHH
Q 016114          220 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR---DKEAEKLVLE  296 (395)
Q Consensus       220 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~  296 (395)
                           .|....++.++|......+++++|+..+++++++        .|....++..+|.++...|+   +++|+..+++
T Consensus       138 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  204 (272)
T 3u4t_A          138 -----TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK  204 (272)
T ss_dssp             -----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred             -----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence                 3455678889994444456999999999999984        45557788999999999999   9999999999


Q ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 016114          297 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK  368 (395)
Q Consensus       297 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  368 (395)
                      ++++......+.......++..+|.++...|+++ +|+.+|++++++     .|+++   .+...++.+...
T Consensus       205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~-----~p~~~---~a~~~l~~~~~~  267 (272)
T 3u4t_A          205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV-KADAAWKNILAL-----DPTNK---KAIDGLKMKLEH  267 (272)
T ss_dssp             HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH-----CTTCH---HHHHHHC-----
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhc-----CccHH---HHHHHhhhhhcc
Confidence            9998755432222335578899999999999999 999999999986     24444   445555544433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.93  E-value=2.5e-24  Score=181.38  Aligned_cols=255  Identities=11%  Similarity=-0.062  Sum_probs=211.8

Q ss_pred             hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCC-hHHHHHHHHHHHHHHHH
Q 016114           55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYTK  133 (395)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~  133 (395)
                      .|....++..+|.++...|++++|+..+++++.+        .|....+++.+|.++...|+ +++|+..|++++.+   
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l---  161 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---  161 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH---
Confidence            4678889999999999999999999999999987        67788999999999999997 99999999999987   


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016114          134 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  213 (395)
Q Consensus       134 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  213 (395)
                           +|....++.++|.++...|++++|+..|++++++.       ++.   ..++.++|.++...|++++|+.+++++
T Consensus       162 -----~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-------P~~---~~a~~~lg~~~~~~g~~~eAl~~~~~a  226 (382)
T 2h6f_A          162 -----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-------AKN---YHAWQHRQWVIQEFKLWDNELQYVDQL  226 (382)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------ccC---HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence                 56667889999999999999999999999999863       233   457799999999999999999999999


Q ss_pred             HHHHHhhhCCCChhHHHHHHHHHHHHHh-hhcHHHH-----HHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC--
Q 016114          214 LLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEA-----ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN--  285 (395)
Q Consensus       214 l~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--  285 (395)
                      +++        +|....+++++|.++.. .|.+++|     +.++++++.+        +|....++.+++.++...|  
T Consensus       227 l~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~  290 (382)
T 2h6f_A          227 LKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLS  290 (382)
T ss_dssp             HHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGG
T ss_pred             HHh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCcc
Confidence            986        45667889999999999 5555777     5889998884        5677789999999999988  


Q ss_pred             ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC---------chhHHHHHHHHH-HHHHHhccCCCCHHH
Q 016114          286 RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE---------DDTKLLELLKRV-LRIQEREFGSESEEV  355 (395)
Q Consensus       286 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~A~~~~~~a-l~~~~~~~~~~~~~~  355 (395)
                      ++++|++.++++ +        ..|....++..+|.++...|+         .+ +|+.+|+++ ++        .+|..
T Consensus       291 ~~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~-~A~~~~~~l~~~--------~DP~r  352 (382)
T 2h6f_A          291 KYPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILN-KALELCEILAKE--------KDTIR  352 (382)
T ss_dssp             GCHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH-HHHHHHHHHHHT--------TCGGG
T ss_pred             chHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHH-HHHHHHHHHHHH--------hCchh
Confidence            688988877664 2        223444578899999998752         24 677777765 43        35666


Q ss_pred             HHHHHHHHHHHHHh
Q 016114          356 MLTLKKVVSYLDKL  369 (395)
Q Consensus       356 ~~~~~~la~~~~~~  369 (395)
                      ...|..++..+..+
T Consensus       353 ~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          353 KEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77788888877654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.93  E-value=1e-24  Score=170.55  Aligned_cols=200  Identities=18%  Similarity=0.174  Sum_probs=161.8

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      |..+.+++.+|.++...|++++|+..|+++++.        .|....++..+|.++...|++++|+..+++++++     
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----   68 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-----   68 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            444567889999999999999999999999875        3445678899999999999999999999999987     


Q ss_pred             CCCChhhhhhHHhHHHHHHHc-----------CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 016114           94 GTESADLVLPLFSLGSLFIKE-----------GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA  162 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  162 (395)
                         .|....++..+|.++...           |++++|+..+++++++        +|....++.++|.++...|++++|
T Consensus        69 ---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A  137 (217)
T 2pl2_A           69 ---TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKA  137 (217)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHH
Confidence               577788999999999999           9999999999999987        455567889999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh
Q 016114          163 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS  242 (395)
Q Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  242 (395)
                      +..|++++++.        +.   ..++.++|.++...|++++|+..|++++++        +|....++.++|.++...
T Consensus       138 ~~~~~~al~~~--------~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~  198 (217)
T 2pl2_A          138 EASLKQALALE--------DT---PEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLK  198 (217)
T ss_dssp             HHHHHHHHHHC--------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHhcc--------cc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHc
Confidence            99999999963        22   456689999999999999999999999986        355567888999999999


Q ss_pred             hcHHHHHHHHHHHH
Q 016114          243 KNFVEAERLLRICL  256 (395)
Q Consensus       243 ~~~~~A~~~~~~a~  256 (395)
                      |++++|+..++++-
T Consensus       199 g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          199 GKAEEAARAAALEH  212 (217)
T ss_dssp             --------------
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998764

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.93  E-value=1.1e-22  Score=179.51  Aligned_cols=296  Identities=11%  Similarity=0.045  Sum_probs=193.0

Q ss_pred             HHHHHHHHHHHHh----hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHh----hCchhHHHHHHHHHHHH
Q 016114           17 DAILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITI   88 (395)
Q Consensus        17 ~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~   88 (395)
                      +.+++.+|.+|..    .+++++|+.+|+++.+.       .   ...++..+|.+|..    .+++++|+.+|+++.+.
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  144 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-------G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ  144 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            4567778888887    88888888888887652       1   13456667777777    67777777777777542


Q ss_pred             HHHhcCCCChhhhhhHHhHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCHH
Q 016114           89 LELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAE  160 (395)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~  160 (395)
                                ....++..+|.+|..    .+++++|+.+|+++.+.       ++   ..++..+|.+|..    .++++
T Consensus       145 ----------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~  204 (490)
T 2xm6_A          145 ----------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------GN---VWSCNQLGYMYSRGLGVERNDA  204 (490)
T ss_dssp             ----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHH
T ss_pred             ----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHhcCCCCCcCHH
Confidence                      124556666666666    66666666666666542       11   2345555555555    55555


Q ss_pred             HHHHHHHHHHHHHHhc------------cc---------------CCCCchHHHHHHHHHHHHHHH----cCChHHHHHH
Q 016114          161 EAVELYKKALRVIKDS------------NY---------------MSLDDSIMENMRIDLAELLHI----VGRGQEGREL  209 (395)
Q Consensus       161 ~A~~~~~~a~~~~~~~------------~~---------------~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~  209 (395)
                      +|+.+|+++.+.....            ..               ....+   ..++.++|.+|..    .+++++|+.+
T Consensus       205 ~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~  281 (490)
T 2xm6_A          205 ISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN---SIAQFRLGYILEQGLAGAKEPLKALEW  281 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence            5555555554310000            00               00000   1234555666655    5666666666


Q ss_pred             HHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhc
Q 016114          210 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-----KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL  284 (395)
Q Consensus       210 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  284 (395)
                      |+++.+.       .   ...++..+|.+|...     +++++|+.+|+++.+.          ....++..+|.+|...
T Consensus       282 ~~~a~~~-------~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~~  341 (490)
T 2xm6_A          282 YRKSAEQ-------G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----------GDATAQANLGAIYFRL  341 (490)
T ss_dssp             HHHHHTT-------T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHS
T ss_pred             HHHHHHc-------C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhC
Confidence            6655431       1   123566677777766     6777777777777651          1235677788888775


Q ss_pred             C---ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----cCCchhHHHHHHHHHHHHHHhccCCCCHHHHH
Q 016114          285 N---RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVML  357 (395)
Q Consensus       285 g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  357 (395)
                      |   ++++|+.+|+++++.       ++   ..++..||.++..    .++++ +|+.+|+++++.       .+   ..
T Consensus       342 g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~-~A~~~~~~A~~~-------~~---~~  400 (490)
T 2xm6_A          342 GSEEEHKKAVEWFRKAAAK-------GE---KAAQFNLGNALLQGKGVKKDEQ-QAAIWMRKAAEQ-------GL---SA  400 (490)
T ss_dssp             CCHHHHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHT-------TC---HH
T ss_pred             CCcccHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHhC-------CC---HH
Confidence            5   777888888887752       22   3568899999998    78888 999999998862       22   46


Q ss_pred             HHHHHHHHHHH----hcchhhhchhhHHHHHHH
Q 016114          358 TLKKVVSYLDK----LGRKEEKFPLKKRLSNLR  386 (395)
Q Consensus       358 ~~~~la~~~~~----~g~~~~A~~~~~~a~~~~  386 (395)
                      ++..||.+|..    .+++++|..+|+++++..
T Consensus       401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          401 AQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            78899999998    899999999999999988

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.93  E-value=4.3e-24  Score=167.03  Aligned_cols=197  Identities=17%  Similarity=0.113  Sum_probs=161.5

Q ss_pred             HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114           59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      ..++..+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+..+++++++        
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------   68 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--------   68 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            457889999999999999999999999875        6778889999999999999999999999999987        


Q ss_pred             ChhHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHH
Q 016114          139 DGRVGMAMCSLAHAKCAN-----------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR  207 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  207 (395)
                      .|....++.++|.++...           |++++|+..+++++++.       |+.   ..++.++|.++...|++++|+
T Consensus        69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------P~~---~~~~~~lg~~~~~~g~~~~A~  138 (217)
T 2pl2_A           69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-------PRY---APLHLQRGLVYALLGERDKAE  138 (217)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-------ccc---HHHHHHHHHHHHHcCChHHHH
Confidence            455667899999999999           99999999999999862       333   356689999999999999999


Q ss_pred             HHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCCh
Q 016114          208 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD  287 (395)
Q Consensus       208 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  287 (395)
                      ..|++++++.         ....++.++|.++...|++++|+..|++++.+        +|....++..+|.++...|++
T Consensus       139 ~~~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~  201 (217)
T 2pl2_A          139 ASLKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKA  201 (217)
T ss_dssp             HHHHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC----
T ss_pred             HHHHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCH
Confidence            9999999872         23567889999999999999999999999984        566778899999999999999


Q ss_pred             HHHHHHHHHHH
Q 016114          288 KEAEKLVLEAL  298 (395)
Q Consensus       288 ~~A~~~~~~al  298 (395)
                      ++|+..++++-
T Consensus       202 ~~A~~~~~~~~  212 (217)
T 2pl2_A          202 EEAARAAALEH  212 (217)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHHh
Confidence            99999998763

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.92  E-value=4e-22  Score=175.93  Aligned_cols=290  Identities=14%  Similarity=0.083  Sum_probs=199.3

Q ss_pred             HHHHHHHHHHHHHh----hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHh----hCchhHHHHHHHHHHH
Q 016114           16 LDAILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVIT   87 (395)
Q Consensus        16 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~   87 (395)
                      .+.+++.+|.+|..    .+++++|+.+|+++.+.       .   ...+++.+|.+|..    .+++++|+.+|+++.+
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  107 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-------G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL  107 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            35678899999998    89999999999999763       1   24578899999999    9999999999999976


Q ss_pred             HHHHhcCCCChhhhhhHHhHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCH
Q 016114           88 ILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNA  159 (395)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~  159 (395)
                      .          ....++..+|.+|..    .+++++|+.+|+++.+.       ++   ..++.++|.+|..    .+++
T Consensus       108 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~d~  167 (490)
T 2xm6_A          108 K----------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------GR---DSGQQSMGDAYFEGDGVTRDY  167 (490)
T ss_dssp             T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCH
T ss_pred             C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCH
Confidence            3          245678899999999    89999999999998763       22   4678899999998    8999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHH
Q 016114          160 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL  235 (395)
Q Consensus       160 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  235 (395)
                      ++|+.+|+++.+.         .+   ..++..+|.+|..    .+++++|+.+|+++.+.       .+   ..++..+
T Consensus       168 ~~A~~~~~~a~~~---------~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~l  225 (490)
T 2xm6_A          168 VMAREWYSKAAEQ---------GN---VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-------GD---ELGQLHL  225 (490)
T ss_dssp             HHHHHHHHHHHHT---------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHH
T ss_pred             HHHHHHHHHHHHC---------CC---HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHH
Confidence            9999999999863         11   3456788888888    78899999988887652       11   2345566


Q ss_pred             HHHHHh----hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHcCC
Q 016114          236 AASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFGK  307 (395)
Q Consensus       236 a~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~  307 (395)
                      |.+|..    .+++++|+.+|+++.+.          ....++..+|.+|..    .+++++|+.+|+++.+.       
T Consensus       226 g~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-------  288 (490)
T 2xm6_A          226 ADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-------  288 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-------
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-------
Confidence            666664    56666666666665531          112344455555554    55555555555554431       


Q ss_pred             CChH----------------------------------HHHHHHHHHHHHHHcC---CchhHHHHHHHHHHHHHHhccCC
Q 016114          308 DSLP----------------------------------VGEALDCLVSIQTRLG---EDDTKLLELLKRVLRIQEREFGS  350 (395)
Q Consensus       308 ~~~~----------------------------------~~~~~~~l~~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~  350 (395)
                      .++.                                  ...++..+|.++...|   +++ +|+.+|+++++.       
T Consensus       289 ~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~-~A~~~~~~a~~~-------  360 (490)
T 2xm6_A          289 GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHK-KAVEWFRKAAAK-------  360 (490)
T ss_dssp             TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHH-HHHHHHHHHHHT-------
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHH-HHHHHHHHHHHC-------
Confidence            1111                                  1123445555555443   334 555555555431       


Q ss_pred             CCHHHHHHHHHHHHHHHH----hcchhhhchhhHHHHHH
Q 016114          351 ESEEVMLTLKKVVSYLDK----LGRKEEKFPLKKRLSNL  385 (395)
Q Consensus       351 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~  385 (395)
                      .+   ..++..||.+|..    .+++++|+.+|+++++.
T Consensus       361 ~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~  396 (490)
T 2xm6_A          361 GE---KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ  396 (490)
T ss_dssp             TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence            12   3456667777776    66777777777776654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.91  E-value=8.5e-22  Score=160.81  Aligned_cols=280  Identities=13%  Similarity=0.015  Sum_probs=212.1

Q ss_pred             HHHhhhcHHHHHHHHHHHHHHHHHhcCcChHH-HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhH
Q 016114           26 MYSTLENYEKSMLVYQRVINVLESRYGKTSIL-LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL  104 (395)
Q Consensus        26 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  104 (395)
                      -.+..|+|.+|+..+++...        .+|. .......++.+|...|++++|+..++.           ..+....++
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----------~~~~~~~a~   68 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----------SSAPELQAV   68 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----------TSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----------cCChhHHHH
Confidence            45668999999998876432        2233 345667789999999999999975543           133456788


Q ss_pred             HhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCch
Q 016114          105 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS  184 (395)
Q Consensus       105 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  184 (395)
                      ..++..+...++.++|+..+++.+..      ..+|....++..+|.++...|++++|+..+++            ++. 
T Consensus        69 ~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------~~~-  129 (291)
T 3mkr_A           69 RMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------GDS-  129 (291)
T ss_dssp             HHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------CCS-
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------CCC-
Confidence            88999999999999999999988753      11455567789999999999999999999886            122 


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhC
Q 016114          185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  264 (395)
Q Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  264 (395)
                        ..++..+|.++...|++++|+..+++++...     +++. .......+..++...|++++|...|+++++.      
T Consensus       130 --~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~------  195 (291)
T 3mkr_A          130 --LECMAMTVQILLKLDRLDLARKELKKMQDQD-----EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK------  195 (291)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------
T ss_pred             --HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh------
Confidence              3456889999999999999999999998762     2221 1111111223444569999999999999883      


Q ss_pred             CCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 016114          265 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ  344 (395)
Q Consensus       265 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~  344 (395)
                        .|....++.++|.++...|++++|+..+++++...     |++   ..++.++|.++...|+..+.+..++++++++ 
T Consensus       196 --~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-----p~~---~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~-  264 (291)
T 3mkr_A          196 --CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-----SGH---PETLINLVVLSQHLGKPPEVTNRYLSQLKDA-  264 (291)
T ss_dssp             --SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred             --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-
Confidence              45677889999999999999999999999999854     444   4568899999999999973467899999876 


Q ss_pred             HhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhh
Q 016114          345 EREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK  379 (395)
Q Consensus       345 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  379 (395)
                          .|++|....       +..+.+.++++..-|
T Consensus       265 ----~P~~~~~~d-------~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          265 ----HRSHPFIKE-------YRAKENDFDRLVLQY  288 (291)
T ss_dssp             ----CTTCHHHHH-------HHHHHHHHHHHHHHH
T ss_pred             ----CCCChHHHH-------HHHHHHHHHHHHHHc
Confidence                466775543       455566666665544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.90  E-value=2.2e-21  Score=157.84  Aligned_cols=225  Identities=15%  Similarity=0.179  Sum_probs=192.8

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHh----hCchhHHHHHHHHHHHHH
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITIL   89 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~   89 (395)
                      |..+.+++.+|.++...|++++|+.+|+++++.       ++   ..++..+|.++..    .+++++|+.+|+++++. 
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-   71 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-   71 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-
Confidence            455678899999999999999999999999871       22   3578899999999    99999999999999875 


Q ss_pred             HHhcCCCChhhhhhHHhHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCHHH
Q 016114           90 ELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEE  161 (395)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~  161 (395)
                               ....++..+|.++..    .+++++|+.+|+++++.       +   ...++.++|.+|..    .+++++
T Consensus        72 ---------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~  132 (273)
T 1ouv_A           72 ---------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKK  132 (273)
T ss_dssp             ---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             ---------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHH
Confidence                     146788999999999    99999999999999874       2   24678999999999    999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHH
Q 016114          162 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  237 (395)
Q Consensus       162 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  237 (395)
                      |+.+++++++.       +  +   ..++.++|.++..    .+++++|+.+++++++.       .+   ..++.++|.
T Consensus       133 A~~~~~~a~~~-------~--~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~  190 (273)
T 1ouv_A          133 AVEYFTKACDL-------N--D---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGN  190 (273)
T ss_dssp             HHHHHHHHHHT-------T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHH
T ss_pred             HHHHHHHHHhc-------C--c---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHH
Confidence            99999999873       1  1   3456889999999    99999999999999864       12   357889999


Q ss_pred             HHHh----hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh----cCChHHHHHHHHHHHHH
Q 016114          238 SYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYI  300 (395)
Q Consensus       238 ~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  300 (395)
                      +|..    .+++++|+.+++++++.       . +  ..++..+|.+|..    .+++++|+.+|+++++.
T Consensus       191 ~~~~g~~~~~~~~~A~~~~~~a~~~-------~-~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          191 MYHHGEGATKNFKEALARYSKACEL-------E-N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHHTCSSCCCHHHHHHHHHHHHHT-------T-C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHhC-------C-C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            9999    99999999999999872       1 2  5678999999999    99999999999999885

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.90  E-value=3.6e-21  Score=156.58  Aligned_cols=229  Identities=14%  Similarity=0.061  Sum_probs=195.2

Q ss_pred             hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
Q 016114           98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVI  173 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~  173 (395)
                      |..+.++..+|.++...|++++|+.+|+++++.       ++   ..++..+|.++..    .+++++|+.+|+++++. 
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-   71 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-   71 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-
Confidence            445678899999999999999999999999861       23   3578899999999    99999999999999874 


Q ss_pred             HhcccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh----hhcH
Q 016114          174 KDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNF  245 (395)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~  245 (395)
                              +   ...++.++|.+|..    .+++++|+.+++++++.       .   ...++.++|.+|..    .+++
T Consensus        72 --------~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~  130 (273)
T 1ouv_A           72 --------N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDF  130 (273)
T ss_dssp             --------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred             --------C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCH
Confidence                    1   14567899999999    99999999999999874       1   34678899999999    9999


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 016114          246 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS  321 (395)
Q Consensus       246 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  321 (395)
                      ++|+.+++++++.       .   ...++..+|.++..    .+++++|+.+++++++.       ++   ..++..+|.
T Consensus       131 ~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~  190 (273)
T 1ouv_A          131 KKAVEYFTKACDL-------N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGN  190 (273)
T ss_dssp             HHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-------C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHH
Confidence            9999999999872       2   34678899999998    99999999999999863       22   356889999


Q ss_pred             HHHH----cCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH----hcchhhhchhhHHHHHHHHHH
Q 016114          322 IQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK----LGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       322 ~~~~----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      ++..    .++++ +|+.+|+++++.       .+   ..++..+|.+|..    .+++++|+.+|++++++.+..
T Consensus       191 ~~~~g~~~~~~~~-~A~~~~~~a~~~-------~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          191 MYHHGEGATKNFK-EALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             HHHHTCSSCCCHH-HHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             HHHcCCCCCccHH-HHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence            9999    99999 999999999874       22   4678999999999    999999999999999987654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.90  E-value=4.1e-21  Score=158.60  Aligned_cols=249  Identities=10%  Similarity=0.060  Sum_probs=197.1

Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHh-c--CcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhH
Q 016114           28 STLENYEKSMLVYQRVINVLESR-Y--GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL  104 (395)
Q Consensus        28 ~~~g~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  104 (395)
                      +..|++++|..+++++.+..... +  .++.......+...|.+|...|++++|+..|.+++.+.....  +....+.++
T Consensus         2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~   79 (307)
T 2ifu_A            2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAF   79 (307)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHH
Confidence            35789999999999998876531 2  345556777788889999999999999999999999987753  455678899


Q ss_pred             HhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCch
Q 016114          105 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS  184 (395)
Q Consensus       105 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  184 (395)
                      .++|.+|..+|++++|+.+|++++.+....  .+....+.++.++|.+|.. |++++|+.+|++++++.+..    .+..
T Consensus        80 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~----~~~~  152 (307)
T 2ifu_A           80 EQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE----ERLR  152 (307)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT----TCHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC----CChh
Confidence            999999999999999999999999998753  2233467889999999999 99999999999999998753    3445


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhC
Q 016114          185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  264 (395)
Q Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  264 (395)
                      ....++.++|.++...|++++|+.+|++++.+.....  ..+.....+..+|.++...|++++|+.+|++++ +....  
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~--  227 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF--  227 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS--
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC--
Confidence            5677889999999999999999999999999877643  234455688899999999999999999999998 42111  


Q ss_pred             CCCcchHHHHHHHHHHHHhcCChHHHHH
Q 016114          265 PDDQSISFPMLHLGITLYHLNRDKEAEK  292 (395)
Q Consensus       265 ~~~~~~~~~~~~la~~~~~~g~~~~A~~  292 (395)
                       ........+..++..+ ..|+.+.+..
T Consensus       228 -~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          228 -SGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             -TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence             1122233455666655 5677655444

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.90  E-value=4.4e-22  Score=162.50  Aligned_cols=261  Identities=12%  Similarity=0.020  Sum_probs=201.8

Q ss_pred             HHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh-hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 016114           67 KVLGSIGRAKKAVEIYHRVITILELNRGTESADL-VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  145 (395)
Q Consensus        67 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  145 (395)
                      ...+..|+|.+|+..+++...        .+|.. ......++.+|...|++++|+..++.           ..+....+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----------~~~~~~~a   67 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----------SSAPELQA   67 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----------TSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----------cCChhHHH
Confidence            445678999999988876432        23443 45677889999999999999876643           13445678


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCC
Q 016114          146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH  225 (395)
Q Consensus       146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  225 (395)
                      +..++..+...|++++|+..+++++...     ..|+.   ..++..+|.++...|++++|+..+++             
T Consensus        68 ~~~la~~~~~~~~~~~A~~~l~~ll~~~-----~~P~~---~~~~~~la~~~~~~g~~~~Al~~l~~-------------  126 (291)
T 3mkr_A           68 VRMFAEYLASHSRRDAIVAELDREMSRS-----VDVTN---TTFLLMAASIYFYDQNPDAALRTLHQ-------------  126 (291)
T ss_dssp             HHHHHHHHHCSTTHHHHHHHHHHHHHSC-----CCCSC---HHHHHHHHHHHHHTTCHHHHHHHHTT-------------
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHhcc-----cCCCC---HHHHHHHHHHHHHCCCHHHHHHHHhC-------------
Confidence            8899999999999999999999987620     12333   34568899999999999999999876             


Q ss_pred             hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHH--HHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 016114          226 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML--HLGITLYHLNRDKEAEKLVLEALYIREI  303 (395)
Q Consensus       226 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~al~~~~~  303 (395)
                      |....++..+|.++..+|++++|+..+++++..        +|.......  .+..++...|++++|...|+++++..  
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--  196 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--------DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--  196 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--
Confidence            233457888999999999999999999999874        122222211  12234445699999999999998753  


Q ss_pred             HcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhh-hchhhHHH
Q 016114          304 AFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE-KFPLKKRL  382 (395)
Q Consensus       304 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a  382 (395)
                         |+   ...++..+|.++...|+++ +|+..|++++..        +|+...++.++|.++...|++++ +..+++++
T Consensus       197 ---p~---~~~~~~~la~~~~~~g~~~-eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~  261 (291)
T 3mkr_A          197 ---SP---TLLLLNGQAACHMAQGRWE-AAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQL  261 (291)
T ss_dssp             ---CC---CHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             ---CC---cHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence               33   3457889999999999999 999999999985        24445678999999999999976 57899999


Q ss_pred             HHHHHHHHhh
Q 016114          383 SNLRMKYKQK  392 (395)
Q Consensus       383 ~~~~~~~~~~  392 (395)
                      +++.|++...
T Consensus       262 ~~~~P~~~~~  271 (291)
T 3mkr_A          262 KDAHRSHPFI  271 (291)
T ss_dssp             HHHCTTCHHH
T ss_pred             HHhCCCChHH
Confidence            9988776543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.89  E-value=3.2e-21  Score=158.04  Aligned_cols=222  Identities=13%  Similarity=0.035  Sum_probs=170.8

Q ss_pred             HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 016114           66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  145 (395)
Q Consensus        66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  145 (395)
                      |.++...|++++|+..|.+++.+.....  +.+..+.++.++|.+|...|++++|+.+|++++.+....  .+....+.+
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~  119 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANF  119 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHH
Confidence            5677889999999999999999987653  445668899999999999999999999999999998764  233446778


Q ss_pred             HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114          146 MCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  224 (395)
Q Consensus       146 ~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  224 (395)
                      +.++|.+|... |++++|+.+|++++++.+..    .+......++.++|.++...|++++|+.+|++++.+..... ..
T Consensus       120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~  194 (292)
T 1qqe_A          120 KFELGEILENDLHDYAKAIDCYELAGEWYAQD----QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR-LS  194 (292)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT-TT
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC----CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC-cc
Confidence            99999999996 99999999999999998652    23444567789999999999999999999999998642211 00


Q ss_pred             ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHH--hcCChHHHHHHHHHHHH
Q 016114          225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY--HLNRDKEAEKLVLEALY  299 (395)
Q Consensus       225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~al~  299 (395)
                      ......++.++|.++...|++++|+..+++++.+.....   .......+..++..+.  ..+++++|+..|++++.
T Consensus       195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            113445788999999999999999999999987432221   1112334556666664  45678888887766543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.89  E-value=1.4e-21  Score=160.25  Aligned_cols=226  Identities=9%  Similarity=-0.044  Sum_probs=174.4

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHH
Q 016114          150 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  229 (395)
Q Consensus       150 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  229 (395)
                      |.+|...|++++|+..|++++++..+.    .+++....++.++|.+|...|++++|+.++++++.+.....  +....+
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a  117 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKA----GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--QFRRGA  117 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--CHHHHH
Confidence            567788999999999999999998764    35566678899999999999999999999999999987643  334457


Q ss_pred             HHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC
Q 016114          230 THLLNLAASYSRS-KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  308 (395)
Q Consensus       230 ~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  308 (395)
                      .++.++|.+|... |++++|+.+|++++.+....  .+......++.++|.++..+|++++|+.+|++++.+....  +.
T Consensus       118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~  193 (292)
T 1qqe_A          118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN--RL  193 (292)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC--TT
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC--Cc
Confidence            7899999999996 99999999999999987643  1222345678999999999999999999999999864211  01


Q ss_pred             -ChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH--HhcchhhhchhhHHHHHH
Q 016114          309 -SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLD--KLGRKEEKFPLKKRLSNL  385 (395)
Q Consensus       309 -~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~~  385 (395)
                       .......+..+|.++...|+++ +|+.+|++++++.....   .......+..++..+.  ..+++++|+..|++++.+
T Consensus       194 ~~~~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l  269 (292)
T 1qqe_A          194 SQWSLKDYFLKKGLCQLAATDAV-AAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (292)
T ss_dssp             TGGGHHHHHHHHHHHHHHTTCHH-HHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence             1134457889999999999999 99999999987543321   1112334556677665  457799999999888666


Q ss_pred             HHHH
Q 016114          386 RMKY  389 (395)
Q Consensus       386 ~~~~  389 (395)
                      .+..
T Consensus       270 ~~~~  273 (292)
T 1qqe_A          270 DKWK  273 (292)
T ss_dssp             CHHH
T ss_pred             HHHH
Confidence            5554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.89  E-value=4.4e-21  Score=158.39  Aligned_cols=246  Identities=9%  Similarity=-0.011  Sum_probs=190.4

Q ss_pred             cCChHHHHHHHHHHHHHHHHH-h--CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHH
Q 016114          114 EGKAVDAESVFSRILKIYTKV-Y--GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  190 (395)
Q Consensus       114 ~g~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  190 (395)
                      .|++++|..+++++.+..... +  +++.......+...|.+|...|++++|+..|.+++++..+.    .+......++
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~a~~~   79 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN----RSLFHAAKAF   79 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc----CCHHHHHHHH
Confidence            467778888888877665421 1  12333345566677889999999999999999999998764    3556677889


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcch
Q 016114          191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  270 (395)
Q Consensus       191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  270 (395)
                      .++|.+|...|++++|+.+|++++.+.....  +......++.++|.+|.. |++++|+.+|++++.+....  .+....
T Consensus        80 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~  154 (307)
T 2ifu_A           80 EQAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQA  154 (307)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHH
Confidence            9999999999999999999999999986543  334567889999999999 99999999999999987653  223345


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCC
Q 016114          271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS  350 (395)
Q Consensus       271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  350 (395)
                      ..++.++|.++..+|++++|+.+|++++.+....  +..+.....+..++.++...|+++ +|+.+|++++ +.... . 
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~g~~~~~~g~~~-~A~~~~~~al-~~p~~-~-  228 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQVLVQLHRADYV-AAQKCVRESY-SIPGF-S-  228 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHT-TSTTS-T-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHh-CCCCC-C-
Confidence            6789999999999999999999999999988664  233445667889999999999999 9999999998 54331 1 


Q ss_pred             CCHHHHHHHHHHHHHHHHhcchhhhc
Q 016114          351 ESEEVMLTLKKVVSYLDKLGRKEEKF  376 (395)
Q Consensus       351 ~~~~~~~~~~~la~~~~~~g~~~~A~  376 (395)
                       .......+..++..+ ..|+.+.+.
T Consensus       229 -~~~e~~~l~~l~~~~-~~~d~~~~~  252 (307)
T 2ifu_A          229 -GSEDCAALEDLLQAY-DEQDEEQLL  252 (307)
T ss_dssp             -TSHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred             -CCHHHHHHHHHHHHH-HhcCHHHHH
Confidence             123344566667666 456654443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.88  E-value=1.7e-21  Score=155.60  Aligned_cols=220  Identities=15%  Similarity=0.199  Sum_probs=161.8

Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcC
Q 016114           15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG   94 (395)
Q Consensus        15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   94 (395)
                      ..+..++.+|..+...|++++|+.+|+++++.        .|....++..+|.++...|++++|+..+++++..      
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------   86 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL------   86 (243)
T ss_dssp             ---------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence            34677889999999999999999999999874        2333567889999999999999999999999986      


Q ss_pred             CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114           95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  174 (395)
Q Consensus        95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  174 (395)
                        .|....++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.+++++++.. 
T Consensus        87 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-  155 (243)
T 2q7f_A           87 --DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-  155 (243)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred             --CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence              45567889999999999999999999999999862        3334578899999999999999999999999863 


Q ss_pred             hcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016114          175 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  254 (395)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  254 (395)
                            ++.   ..++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|..++++
T Consensus       156 ------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  218 (243)
T 2q7f_A          156 ------END---TEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDK  218 (243)
T ss_dssp             ------TTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             ------Ccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence                  222   346688999999999999999999999875        233456788999999999999999999999


Q ss_pred             HHHHHHHhhCCCCcchHHHHHHHHHHHHhc
Q 016114          255 CLDIMTKTVGPDDQSISFPMLHLGITLYHL  284 (395)
Q Consensus       255 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  284 (395)
                      ++++        .|....++..++.+....
T Consensus       219 ~~~~--------~p~~~~~~~~~~~l~~~~  240 (243)
T 2q7f_A          219 AIDI--------QPDHMLALHAKKLLGHHH  240 (243)
T ss_dssp             HHHH--------CTTCHHHHHHHTC-----
T ss_pred             HHcc--------CcchHHHHHHHHHHHhhc
Confidence            9884        344555556655554433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.88  E-value=5.8e-20  Score=147.60  Aligned_cols=205  Identities=12%  Similarity=0.062  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114           57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  136 (395)
                      ..+.++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++..      
T Consensus        35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------  100 (252)
T 2ho1_A           35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS------  100 (252)
T ss_dssp             HHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------
Confidence            34888999999999999999999999999986        3556788999999999999999999999999986      


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                        .|....++..+|.++...|++++|+.++++++.        .+..+....++..+|.++...|++++|+.++++++..
T Consensus       101 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  170 (252)
T 2ho1_A          101 --DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ--------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL  170 (252)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh--------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence              234456789999999999999999999999876        1123334567789999999999999999999999875


Q ss_pred             HHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016114          217 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  296 (395)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  296 (395)
                      .        |....++..+|.++...|++++|...+++++.        ..|.....+..++.++...|++++|..++++
T Consensus       171 ~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  234 (252)
T 2ho1_A          171 N--------RNQPSVALEMADLLYKEREYVPARQYYDLFAQ--------GGGQNARSLLLGIRLAKVFEDRDTAASYGLQ  234 (252)
T ss_dssp             C--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--------TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             C--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            2        33356788999999999999999999999876        2455667888999999999999999999999


Q ss_pred             HHHHH
Q 016114          297 ALYIR  301 (395)
Q Consensus       297 al~~~  301 (395)
                      +++..
T Consensus       235 ~~~~~  239 (252)
T 2ho1_A          235 LKRLY  239 (252)
T ss_dssp             HHHHC
T ss_pred             HHHHC
Confidence            98754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.88  E-value=1.9e-21  Score=155.31  Aligned_cols=203  Identities=14%  Similarity=0.168  Sum_probs=157.1

Q ss_pred             HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114           57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  136 (395)
                      ..+..+..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++..      
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------   86 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL------   86 (243)
T ss_dssp             ---------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence            45677889999999999999999999999874        4566788999999999999999999999999986      


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                        .|....++..+|.++...|++++|+.+++++++..       +..   ..++..+|.++...|++++|+.++++++..
T Consensus        87 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  154 (243)
T 2q7f_A           87 --DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-------MEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVEL  154 (243)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------CCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             --CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence              34445788999999999999999999999999863       222   345688999999999999999999999876


Q ss_pred             HHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016114          217 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  296 (395)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  296 (395)
                      .        |....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|..++++
T Consensus       155 ~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  218 (243)
T 2q7f_A          155 N--------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDK  218 (243)
T ss_dssp             C--------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             C--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            2        334567889999999999999999999999874        345567889999999999999999999999


Q ss_pred             HHHHH
Q 016114          297 ALYIR  301 (395)
Q Consensus       297 al~~~  301 (395)
                      +++..
T Consensus       219 ~~~~~  223 (243)
T 2q7f_A          219 AIDIQ  223 (243)
T ss_dssp             HHHHC
T ss_pred             HHccC
Confidence            98854

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.88  E-value=5.9e-21  Score=166.96  Aligned_cols=222  Identities=15%  Similarity=0.106  Sum_probs=184.8

Q ss_pred             HHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCch-hHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHH
Q 016114           35 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA-KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK  113 (395)
Q Consensus        35 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~  113 (395)
                      .....+++++........ ..+..+.++..+|.++...|++ ++|+..|++++++        .|....++..+|.+|..
T Consensus        79 ~~~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~  149 (474)
T 4abn_A           79 DVQEEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWK  149 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHH
Confidence            444555566655544322 2345677899999999999999 9999999999987        56677899999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHhcccCCCCch
Q 016114          114 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN---------GNAEEAVELYKKALRVIKDSNYMSLDDS  184 (395)
Q Consensus       114 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~~~  184 (395)
                      .|++++|+.+|++++++        .|. ..++.++|.++...         |++++|+..+++++++.       ++. 
T Consensus       150 ~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~-  212 (474)
T 4abn_A          150 KGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-------VLD-  212 (474)
T ss_dssp             HTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-------TTC-
T ss_pred             cCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-------CCC-
Confidence            99999999999999976        244 48899999999999         99999999999999863       233 


Q ss_pred             HHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114          185 IMENMRIDLAELLHIV--------GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  256 (395)
Q Consensus       185 ~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  256 (395)
                        ..++.++|.++...        |++++|+..|++++.+..     ..+....++.++|.++...|++++|+..|++++
T Consensus       213 --~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  285 (474)
T 4abn_A          213 --GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR-----KASSNPDLHLNRATLHKYEESYGEALEGFSQAA  285 (474)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG-----GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC-----CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              45678999999999        999999999999998721     111667889999999999999999999999999


Q ss_pred             HHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016114          257 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  297 (395)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  297 (395)
                      .+        .|....++..++.++...|++++|+..+.+.
T Consensus       286 ~l--------~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          286 AL--------DPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HH--------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             Hh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            84        4666788999999999999999998876543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.88  E-value=1.5e-20  Score=153.08  Aligned_cols=258  Identities=14%  Similarity=0.040  Sum_probs=196.5

Q ss_pred             HHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 016114           66 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  145 (395)
Q Consensus        66 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  145 (395)
                      +......|++++|+..+++++...    ..++|....++..+|.++...|++++|+.+|++++..        .|....+
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~   79 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEV   79 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHH
T ss_pred             eeccCccchHHHHHHHHHHHHhcc----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHH
Confidence            344456689999999999988751    1235678889999999999999999999999999987        3444568


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCC
Q 016114          146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH  225 (395)
Q Consensus       146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  225 (395)
                      +..+|.++...|++++|+.++++++++.       +..   ..++..+|.++...|++++|+.++++++.+.     +++
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~  144 (275)
T 1xnf_A           80 FNYLGIYLTQAGNFDAAYEAFDSVLELD-------PTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PND  144 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcC-------ccc---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCC
Confidence            8999999999999999999999999863       222   3567899999999999999999999999862     223


Q ss_pred             hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc
Q 016114          226 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  305 (395)
Q Consensus       226 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  305 (395)
                      +   .....+ .+....|++++|...+++++...     +..   .. ...++.++...++.++|+..+++++...... 
T Consensus       145 ~---~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-  210 (275)
T 1xnf_A          145 P---FRSLWL-YLAEQKLDEKQAKEVLKQHFEKS-----DKE---QW-GWNIVEFYLGNISEQTLMERLKADATDNTSL-  210 (275)
T ss_dssp             H---HHHHHH-HHHHHHHCHHHHHHHHHHHHHHS-----CCC---ST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH-
T ss_pred             h---HHHHHH-HHHHHhcCHHHHHHHHHHHHhcC-----Ccc---hH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccc-
Confidence            2   222222 34467799999999999888731     222   11 2457788889999999999999887754321 


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhh
Q 016114          306 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK  379 (395)
Q Consensus       306 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  379 (395)
                         .+....++..+|.++...|+++ +|+.+|++++.+     .+.+      ....+.++...|++++|+..+
T Consensus       211 ---~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~-----~p~~------~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          211 ---AEHLSETNFYLGKYYLSLGDLD-SATALFKLAVAN-----NVHN------FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTT-----CCTT------CHHHHHHHHHHHHHHHC----
T ss_pred             ---cccccHHHHHHHHHHHHcCCHH-HHHHHHHHHHhC-----Cchh------HHHHHHHHHHHHHHHhhHHHH
Confidence               1344678899999999999999 999999999864     2222      123367888899999999887

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.87  E-value=7.1e-21  Score=145.07  Aligned_cols=171  Identities=16%  Similarity=0.186  Sum_probs=150.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC
Q 016114          187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  266 (395)
Q Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  266 (395)
                      ..+|.++|.+|...|++++|+..|++++++        +|....++..+|.++...|++++|+..+.+++..        
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--------   68 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--------   68 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence            457899999999999999999999999986        3556678999999999999999999999998873        


Q ss_pred             CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114          267 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  346 (395)
Q Consensus       267 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  346 (395)
                      .|....++..+|.++...++++.|...+.+++...     ++   ...++..+|.++...|+++ +|+..|++++++   
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-----~~---~~~~~~~lg~~~~~~g~~~-~A~~~~~~~l~~---  136 (184)
T 3vtx_A           69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-----TV---YADAYYKLGLVYDSMGEHD-KAIEAYEKTISI---  136 (184)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH---
T ss_pred             CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cc---chHHHHHHHHHHHHhCCch-hHHHHHHHHHHh---
Confidence            45667788999999999999999999999998753     33   3457889999999999999 999999999986   


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          347 EFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       347 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                           +|....++..+|.+|..+|++++|+..|++++++.|+..
T Consensus       137 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          137 -----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             -----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence                 244467899999999999999999999999999988753

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.87  E-value=3.6e-20  Score=149.49  Aligned_cols=213  Identities=13%  Similarity=0.062  Sum_probs=181.3

Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114          139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  218 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  218 (395)
                      .+.....+..+|..+...|++++|+..|+++++.       .|+++....++..+|.++...|++++|+..|++++... 
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-   82 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-------GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-   82 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-------CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-
Confidence            3445678899999999999999999999999874       45565667788999999999999999999999999863 


Q ss_pred             hhhCCCChhHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHH--------------HH
Q 016114          219 KYKGKEHPSFVTHLLNLAASYSR--------SKNFVEAERLLRICLDIMTKTVGPDDQSISFPM--------------LH  276 (395)
Q Consensus       219 ~~~~~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~  276 (395)
                          ++++....++..+|.++..        .|++++|+..|++++...     ++++....+.              ..
T Consensus        83 ----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~  153 (261)
T 3qky_A           83 ----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYE  153 (261)
T ss_dssp             ----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHH
Confidence                3456778899999999999        999999999999998842     4455555554              88


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc----------CCchhHHHHHHHHHHHHHHh
Q 016114          277 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL----------GEDDTKLLELLKRVLRIQER  346 (395)
Q Consensus       277 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~A~~~~~~al~~~~~  346 (395)
                      +|.+|...|++++|+..|+++++..     |+++....++..+|.++...          |+++ +|+..|+++++..  
T Consensus       154 la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~-~A~~~~~~~~~~~--  225 (261)
T 3qky_A          154 AARLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYR-RAVELYERLLQIF--  225 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH-HHHHHHHHHHHHC--
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHH-HHHHHHHHHHHHC--
Confidence            9999999999999999999999864     56666778899999999977          7778 9999999999863  


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHhcchhhhchhh
Q 016114          347 EFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK  379 (395)
Q Consensus       347 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  379 (395)
                         |+++....+...++.++...++++++..+.
T Consensus       226 ---p~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  255 (261)
T 3qky_A          226 ---PDSPLLRTAEELYTRARQRLTELEGDASLA  255 (261)
T ss_dssp             ---TTCTHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred             ---CCChHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence               667888889999999999999998887654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.87  E-value=1.4e-19  Score=142.63  Aligned_cols=206  Identities=11%  Similarity=0.014  Sum_probs=174.1

Q ss_pred             hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114           55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  134 (395)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  134 (395)
                      .|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|..++++++..    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----   71 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI----   71 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----
Confidence            4566788999999999999999999999999986        3455778999999999999999999999999986    


Q ss_pred             hCCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016114          135 YGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  213 (395)
Q Consensus       135 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  213 (395)
                          .|....++..+|.++... |++++|+.+++++++ .       +..+....++..+|.++...|++++|+.+++++
T Consensus        72 ----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  139 (225)
T 2vq2_A           72 ----KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-D-------PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS  139 (225)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-S-------TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-C-------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                344456789999999999 999999999999987 1       223333566789999999999999999999999


Q ss_pred             HHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCc-chHHHHHHHHHHHHhcCChHHHHH
Q 016114          214 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEK  292 (395)
Q Consensus       214 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~  292 (395)
                      +...        |....++..+|.++...|++++|...+++++...        | .....+..++.++...|+.++|..
T Consensus       140 ~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~  203 (225)
T 2vq2_A          140 LAAQ--------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV--------EVLQADDLLLGWKIAKALGNAQAAYE  203 (225)
T ss_dssp             HHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhC--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence            8752        3345678899999999999999999999998742        3 445567788889999999999999


Q ss_pred             HHHHHHHH
Q 016114          293 LVLEALYI  300 (395)
Q Consensus       293 ~~~~al~~  300 (395)
                      +++.+...
T Consensus       204 ~~~~~~~~  211 (225)
T 2vq2_A          204 YEAQLQAN  211 (225)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99887664

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.87  E-value=5.3e-20  Score=147.80  Aligned_cols=207  Identities=13%  Similarity=0.046  Sum_probs=176.7

Q ss_pred             CcHHH-HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114           12 DEPLL-DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   90 (395)
Q Consensus        12 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   90 (395)
                      .+|.. +.++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+..+++++..  
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--  100 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID--------PSSADAHAALAVVFQTEMEPKLADEEYRKALAS--  100 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--
Confidence            34554 8899999999999999999999999998862        233567889999999999999999999999986  


Q ss_pred             HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114           91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  170 (395)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  170 (395)
                            .|....++..+|.++...|++++|+.++++++.      .+..|....++..+|.++...|++++|+.++++++
T Consensus       101 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  168 (252)
T 2ho1_A          101 ------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL  168 (252)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                  345577899999999999999999999999886      12456777889999999999999999999999998


Q ss_pred             HHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHH
Q 016114          171 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  250 (395)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  250 (395)
                      +..       +..   ..++..+|.++...|++++|+.++++++..        .|.....+..++.++...|++++|..
T Consensus       169 ~~~-------~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~  230 (252)
T 2ho1_A          169 RLN-------RNQ---PSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAAS  230 (252)
T ss_dssp             HHC-------SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcC-------ccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHH
Confidence            852       222   345688999999999999999999998763        23345667889999999999999999


Q ss_pred             HHHHHHHH
Q 016114          251 LLRICLDI  258 (395)
Q Consensus       251 ~~~~a~~~  258 (395)
                      ++++++..
T Consensus       231 ~~~~~~~~  238 (252)
T 2ho1_A          231 YGLQLKRL  238 (252)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999874

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.87  E-value=5.7e-21  Score=173.28  Aligned_cols=176  Identities=21%  Similarity=0.273  Sum_probs=157.0

Q ss_pred             CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114           11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   90 (395)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   90 (395)
                      ...|..+.+++++|.++..+|++++|+.+|++++++        .|....++.++|.++...|++++|+..|++++++  
T Consensus         3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--   72 (723)
T 4gyw_A            3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--   72 (723)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence            357889999999999999999999999999999987        2445678999999999999999999999999997  


Q ss_pred             HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114           91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  170 (395)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  170 (395)
                            .|....++.++|.++..+|++++|+..|++++++        +|....++.++|.++...|++++|+..|++++
T Consensus        73 ------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al  138 (723)
T 4gyw_A           73 ------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTAL  138 (723)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                  5778899999999999999999999999999987        56667899999999999999999999999999


Q ss_pred             HHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Q 016114          171 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  220 (395)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  220 (395)
                      ++       .|+.   ..++.++|.++...|++++|++.+++++++....
T Consensus       139 ~l-------~P~~---~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          139 KL-------KPDF---PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             HH-------CSCC---HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             Hh-------CCCC---hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence            86       2333   4567899999999999999999999999987654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.87  E-value=1.6e-20  Score=143.05  Aligned_cols=167  Identities=17%  Similarity=0.225  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   95 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   95 (395)
                      .+.+|+.+|.+|...|++++|+..|++++++        +|....++..+|.++...|++++|+..+.+++..       
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------   68 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-------   68 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence            4567899999999999999999999999986        2444678999999999999999999999999876       


Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                       .|....++..+|.++...++++.|...+.+++..        .|....++..+|.++...|++++|+..|++++++.  
T Consensus        69 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--  137 (184)
T 3vtx_A           69 -DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--  137 (184)
T ss_dssp             -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             -CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--
Confidence             4566778899999999999999999999999886        34455678899999999999999999999999862  


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                           |+.   ..++.++|.+|...|++++|+..|++++++
T Consensus       138 -----p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          138 -----PGF---IRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             -----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             -----chh---hhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence                 333   456789999999999999999999999985

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.87  E-value=2.5e-20  Score=150.47  Aligned_cols=210  Identities=15%  Similarity=0.105  Sum_probs=176.8

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      .|..+..++.+|..++..|++++|+..|++++..     .++++....+++.+|.++...|++++|+..|++++..    
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----   81 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI----   81 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----
Confidence            3445677899999999999999999999999875     3455566788999999999999999999999999987    


Q ss_pred             cCCCChhhhhhHHhHHHHHHH--------cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH--------------HHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIK--------EGKAVDAESVFSRILKIYTKVYGENDGRVGMAM--------------CSLA  150 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~la  150 (395)
                       .++++....+++.+|.++..        .|++++|+..|++++...     |+++....+.              ..+|
T Consensus        82 -~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la  155 (261)
T 3qky_A           82 -YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAA  155 (261)
T ss_dssp             -CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             34566778899999999999        999999999999999873     4455554454              8899


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHHHHhh
Q 016114          151 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV----------GRGQEGRELLEECLLITEKY  220 (395)
Q Consensus       151 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~  220 (395)
                      .+|...|++++|+..|+++++.       .|+++....++..+|.+|...          |++++|+..+++++...   
T Consensus       156 ~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~---  225 (261)
T 3qky_A          156 RLYERRELYEAAAVTYEAVFDA-------YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF---  225 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-------CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHccCHHHHHHHHHHHHHH-------CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---
Confidence            9999999999999999999985       345555667789999999977          89999999999998863   


Q ss_pred             hCCCChhHHHHHHHHHHHHHhhhcHHHHH
Q 016114          221 KGKEHPSFVTHLLNLAASYSRSKNFVEAE  249 (395)
Q Consensus       221 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~  249 (395)
                        ++++....+...++.++...++++++.
T Consensus       226 --p~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          226 --PDSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             --TTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             --CCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence              466777788888999988888877654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.87  E-value=2.6e-20  Score=162.88  Aligned_cols=218  Identities=14%  Similarity=0.021  Sum_probs=182.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCCh-HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 016114           77 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA-VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  155 (395)
Q Consensus        77 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  155 (395)
                      .....+++++....... ...+..+.++..+|.++...|++ ++|+.+|++++++        +|....++..+|.+|..
T Consensus        79 ~~~~~~~~al~~l~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~  149 (474)
T 4abn_A           79 DVQEEMEKTLQQMEEVL-GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWK  149 (474)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHH
Confidence            44455566665555443 24567788999999999999999 9999999999987        45556789999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHHhhhCCCCh
Q 016114          156 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV---------GRGQEGRELLEECLLITEKYKGKEHP  226 (395)
Q Consensus       156 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~  226 (395)
                      .|++++|+.+|++++++       .++    ..++.++|.++...         |++++|+..+++++++        .|
T Consensus       150 ~g~~~~A~~~~~~al~~-------~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p  210 (474)
T 4abn_A          150 KGDVTSAHTCFSGALTH-------CKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DV  210 (474)
T ss_dssp             HTCHHHHHHHHHHHHTT-------CCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred             cCCHHHHHHHHHHHHhh-------CCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CC
Confidence            99999999999999974       233    36779999999999         9999999999999986        34


Q ss_pred             hHHHHHHHHHHHHHhh--------hcHHHHHHHHHHHHHHHHHhhCCCCc---chHHHHHHHHHHHHhcCChHHHHHHHH
Q 016114          227 SFVTHLLNLAASYSRS--------KNFVEAERLLRICLDIMTKTVGPDDQ---SISFPMLHLGITLYHLNRDKEAEKLVL  295 (395)
Q Consensus       227 ~~~~~~~~la~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~  295 (395)
                      ....++.++|.++...        |++++|+..|++++.+        .|   ....++.++|.++...|++++|+..|+
T Consensus       211 ~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  282 (474)
T 4abn_A          211 LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--------DRKASSNPDLHLNRATLHKYEESYGEALEGFS  282 (474)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4567899999999999        9999999999999985        35   778899999999999999999999999


Q ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114          296 EALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR  339 (395)
Q Consensus       296 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  339 (395)
                      +++++.     ++   ...++..++.++...|+++ +|+..+.+
T Consensus       283 ~al~l~-----p~---~~~a~~~l~~~~~~lg~~~-eAi~~~~~  317 (474)
T 4abn_A          283 QAAALD-----PA---WPEPQQREQQLLEFLSRLT-SLLESKGK  317 (474)
T ss_dssp             HHHHHC-----TT---CHHHHHHHHHHHHHHHHHH-HHHHHTTT
T ss_pred             HHHHhC-----CC---CHHHHHHHHHHHHHHHHHH-HHHHHhcc
Confidence            999864     33   3457889999999999888 77766544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.87  E-value=2.4e-19  Score=141.31  Aligned_cols=207  Identities=15%  Similarity=0.072  Sum_probs=174.5

Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      ..|....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++...  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--   72 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--   72 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--
Confidence            35677889999999999999999999999999986        34445688999999999999999999999999852  


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016114          176 SNYMSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  254 (395)
Q Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  254 (395)
                           ++.   ..++..+|.++... |++++|+.++++++.      .+..|....++..+|.++...|++++|+.++++
T Consensus        73 -----~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  138 (225)
T 2vq2_A           73 -----PDS---AEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR  138 (225)
T ss_dssp             -----TTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -----CCC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                 222   34668899999999 999999999999886      124566678899999999999999999999999


Q ss_pred             HHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHHcCCchhHH
Q 016114          255 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK-DSLPVGEALDCLVSIQTRLGEDDTKL  333 (395)
Q Consensus       255 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A  333 (395)
                      ++..        .|....++..+|.++...|++++|..++++++...     + ..+.   .+..++.++...|+.+ +|
T Consensus       139 ~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~-~a  201 (225)
T 2vq2_A          139 SLAA--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-----EVLQAD---DLLLGWKIAKALGNAQ-AA  201 (225)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CSCCHH---HHHHHHHHHHHTTCHH-HH
T ss_pred             HHHh--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCCHH---HHHHHHHHHHhcCcHH-HH
Confidence            9874        34556788999999999999999999999998865     3 3333   4667888889999988 89


Q ss_pred             HHHHHHHHHH
Q 016114          334 LELLKRVLRI  343 (395)
Q Consensus       334 ~~~~~~al~~  343 (395)
                      ..+++.+...
T Consensus       202 ~~~~~~~~~~  211 (225)
T 2vq2_A          202 YEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9888888764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.87  E-value=1.6e-20  Score=170.35  Aligned_cols=175  Identities=18%  Similarity=0.177  Sum_probs=157.1

Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      ..|..+.+++++|.++..+|++++|+.+|++++++        +|....++.++|.++..+|++++|+..|++++++.  
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--   73 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--   73 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence            46888999999999999999999999999999987        46667899999999999999999999999999862  


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114          176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  255 (395)
Q Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  255 (395)
                           ++.   ..++.++|.++..+|++++|+..|++++++        +|....++.++|.++..+|++++|+..|+++
T Consensus        74 -----P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  137 (723)
T 4gyw_A           74 -----PTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTA  137 (723)
T ss_dssp             -----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                 333   567899999999999999999999999986        3556788999999999999999999999999


Q ss_pred             HHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 016114          256 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  304 (395)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  304 (395)
                      +++        +|....++.++|.++...|++++|.+.+++++++....
T Consensus       138 l~l--------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          138 LKL--------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             HHH--------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHh--------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence            985        57778899999999999999999999999999987654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.87  E-value=5.9e-20  Score=149.55  Aligned_cols=233  Identities=12%  Similarity=0.052  Sum_probs=167.2

Q ss_pred             CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114           11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   90 (395)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   90 (395)
                      .++|..+.++..+|.++...|++++|+..|++++...        |....++..+|.++...|++++|+..+++++..  
T Consensus        37 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--  106 (275)
T 1xnf_A           37 LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--  106 (275)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Confidence            4467788888889999999999999999998888762        223456788888999999999999999988876  


Q ss_pred             HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114           91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  170 (395)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  170 (395)
                            .|....++..+|.++...|++++|+.++++++..     .++++.   ....++ +....|++++|+..+++++
T Consensus       107 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~---~~~~~~-~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A          107 ------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDPF---RSLWLY-LAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             ------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH---HHHHHH-HHHHHHCHHHHHHHHHHHH
T ss_pred             ------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCChH---HHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence                  3445678888899999999999999999988876     223332   222222 3355688999999888887


Q ss_pred             HHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHH
Q 016114          171 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  250 (395)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  250 (395)
                      ...       ++...    ...++.++...++.++|+..+++++......    .+....++..+|.++...|++++|..
T Consensus       172 ~~~-------~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~  236 (275)
T 1xnf_A          172 EKS-------DKEQW----GWNIVEFYLGNISEQTLMERLKADATDNTSL----AEHLSETNFYLGKYYLSLGDLDSATA  236 (275)
T ss_dssp             HHS-------CCCST----HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcC-------CcchH----HHHHHHHHHHhcCHHHHHHHHHHHhcccccc----cccccHHHHHHHHHHHHcCCHHHHHH
Confidence            752       12211    1346777778888888888888876643321    23446788899999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHH
Q 016114          251 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  294 (395)
Q Consensus       251 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  294 (395)
                      ++++++.+        .|...   ...+.++...|++++|++.+
T Consensus       237 ~~~~al~~--------~p~~~---~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          237 LFKLAVAN--------NVHNF---VEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHTT--------CCTTC---HHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHhC--------CchhH---HHHHHHHHHHHHHHhhHHHH
Confidence            99998873        23222   23366778888888888776

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.87  E-value=1.3e-20  Score=162.83  Aligned_cols=152  Identities=10%  Similarity=-0.028  Sum_probs=145.8

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHH
Q 016114          234 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG  313 (395)
Q Consensus       234 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  313 (395)
                      ..+..+..+|++++|+.++++++++.++.+|++||.++.++.+||.+|..+|++++|+.++++++++.+..+|++||.++
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            34556778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114          314 EALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  386 (395)
Q Consensus       314 ~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  386 (395)
                      .++.+||.+|..+|+++ +|+.+|++|+++.+..+|++||.+..+...++.++..+|++++|...|+++.+-.
T Consensus       394 ~~l~nLa~~~~~~G~~~-eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIE-VGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 9999999999999999999999999999999999999999999999999987644

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.86  E-value=3.7e-20  Score=159.92  Aligned_cols=153  Identities=14%  Similarity=0.106  Sum_probs=146.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcch
Q 016114          191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  270 (395)
Q Consensus       191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  270 (395)
                      ...+..+..+|++++|+.++++++++.++.+|++||.++.++.+||.+|..+|++++|+.++++++++.++.+|++||.+
T Consensus       313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            34455677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Q 016114          271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ  344 (395)
Q Consensus       271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~  344 (395)
                      +.++.+||.+|..+|++++|+.++++|+++.+..+|++||.+......++.++..++.+. +|...|+++.+..
T Consensus       393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~-~ae~~~~~~~~~~  465 (490)
T 3n71_A          393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR-QNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999 9999999987654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.83  E-value=1.7e-18  Score=136.69  Aligned_cols=184  Identities=10%  Similarity=0.044  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114           60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  139 (395)
Q Consensus        60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  139 (395)
                      ..+..+|.++...|++++|+..|++++.+.       ++....++..+|.++...|++++|+.++++++..        +
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT-------NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--------N   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------T
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcc-------CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------C
Confidence            678899999999999999999999999872       2134467778999999999999999999999975        5


Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCch----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114          140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS----IMENMRIDLAELLHIVGRGQEGRELLEECLL  215 (395)
Q Consensus       140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  215 (395)
                      |....++..+|.++...|++++|+..+++++++.       |+.+    ....++.++|.++...|++++|+..|+++++
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  145 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-------PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD  145 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence            6677899999999999999999999999999863       3322    2346789999999999999999999999987


Q ss_pred             HHHhhhCCCChh--HHHHHHHHHHHHHhhhcH---------------------------HHHHHHHHHHHHHHHHhhCCC
Q 016114          216 ITEKYKGKEHPS--FVTHLLNLAASYSRSKNF---------------------------VEAERLLRICLDIMTKTVGPD  266 (395)
Q Consensus       216 ~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~---------------------------~~A~~~~~~a~~~~~~~~~~~  266 (395)
                      +        +|.  ...++.++|.++...|+.                           ++|+.++++++++        
T Consensus       146 ~--------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------  209 (228)
T 4i17_A          146 V--------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------  209 (228)
T ss_dssp             S--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             c--------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------
Confidence            4        566  778999999999999988                           7888888888774        


Q ss_pred             CcchHHHHHHHHHHH
Q 016114          267 DQSISFPMLHLGITL  281 (395)
Q Consensus       267 ~~~~~~~~~~la~~~  281 (395)
                      .|....+...++.+.
T Consensus       210 ~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          210 SPNRTEIKQMQDQVK  224 (228)
T ss_dssp             CTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            344445555555543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.83  E-value=3.6e-19  Score=154.74  Aligned_cols=224  Identities=15%  Similarity=0.061  Sum_probs=166.7

Q ss_pred             hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhcc
Q 016114          101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVELYKKALRVIKDSN  177 (395)
Q Consensus       101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~  177 (395)
                      ..+.+.+|.+|...+.++++..........   . ...+|.   ++.++|.+|...|   ++++|+.+|+++.+.     
T Consensus       141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~---a-~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-----  208 (452)
T 3e4b_A          141 PEAGLAQVLLYRTQGTYDQHLDDVERICKA---A-LNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR-----  208 (452)
T ss_dssp             TTHHHHHHHHHHHHTCGGGGHHHHHHHHHH---H-TTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHcCCCcccCHHHHHHHHHH---H-HcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-----
Confidence            445667777777777666666553333222   2 123343   7889999999999   999999999999873     


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHH-H--HhhhcHHHHHH
Q 016114          178 YMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS-Y--SRSKNFVEAER  250 (395)
Q Consensus       178 ~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~--~~~~~~~~A~~  250 (395)
                        ++..   ...+.++|.+|...    +++++|+.+|+++.           +....+++++|.+ +  ...+++++|+.
T Consensus       209 --g~~~---a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~  272 (452)
T 3e4b_A          209 --GTVT---AQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMMK  272 (452)
T ss_dssp             --TCSC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred             --CCHH---HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence              2222   33447899998665    69999999999875           2234578899998 4  57899999999


Q ss_pred             HHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Q 016114          251 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN-----RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR  325 (395)
Q Consensus       251 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~  325 (395)
                      +|+++.+          .....++.+||.+|. .|     ++++|+.+|+++.        +.+   ..+...||.+|..
T Consensus       273 ~~~~Aa~----------~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~---~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          273 YLDNGRA----------ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--------GRE---VAADYYLGQIYRR  330 (452)
T ss_dssp             HHHHHHH----------TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTC---HHHHHHHHHHHHT
T ss_pred             HHHHHHH----------CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCC---HHHHHHHHHHHHC
Confidence            9999986          224668899999998 66     9999999999886        123   3578899988887


Q ss_pred             ----cCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH----hcchhhhchhhHHHHHH
Q 016114          326 ----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK----LGRKEEKFPLKKRLSNL  385 (395)
Q Consensus       326 ----~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~  385 (395)
                          ..+++ +|+.+|+++.+.       .+   ..+.+.||.+|..    ..++++|..+|+++.+.
T Consensus       331 G~g~~~d~~-~A~~~~~~Aa~~-------g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~  387 (452)
T 3e4b_A          331 GYLGKVYPQ-KALDHLLTAARN-------GQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ  387 (452)
T ss_dssp             TTTSSCCHH-HHHHHHHHHHTT-------TC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred             CCCCCcCHH-HHHHHHHHHHhh-------Ch---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence                33677 999999998751       22   4577899999885    45889999999998754

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.82  E-value=2.3e-19  Score=155.97  Aligned_cols=286  Identities=12%  Similarity=0.062  Sum_probs=143.2

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCch---hHHHHHHHHHHHHHHHhcCCCC
Q 016114           21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA---KKAVEIYHRVITILELNRGTES   97 (395)
Q Consensus        21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~   97 (395)
                      ..+|..+...|++++|+.+|+++.+.     +     ...+++.+|.+|...|++   ++|+.+|+++++.         
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~-----g-----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---------   67 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAEL-----G-----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---------   67 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-----T-----CCTGGGTCC----------------------------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC-----C-----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---------
Confidence            45788999999999999999998764     1     123567788888888888   8999999888753         


Q ss_pred             hhhhhhHHhHHHHHHHcC-----ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114           98 ADLVLPLFSLGSLFIKEG-----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                        .+.+++.+|.++...+     ++++|+.+|+++++.       +++.   ++.++|.+|...+...++...++.....
T Consensus        68 --~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-------g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a  135 (452)
T 3e4b_A           68 --SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-------GEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQW  135 (452)
T ss_dssp             -----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-------TCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-------CCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence              2456788888666665     778899888888762       2222   4455555555544433322222221111


Q ss_pred             HHhcc------------------------------cCCCCchHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHh
Q 016114          173 IKDSN------------------------------YMSLDDSIMENMRIDLAELLHIVG---RGQEGRELLEECLLITEK  219 (395)
Q Consensus       173 ~~~~~------------------------------~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~  219 (395)
                      .....                              ....++.    ++.++|.+|...|   ++++|+.+|+++.+.   
T Consensus       136 ~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~----a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~---  208 (452)
T 3e4b_A          136 QAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI----CYVELATVYQKKQQPEQQAELLKQMEAGVSR---  208 (452)
T ss_dssp             HHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---
T ss_pred             HHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC---
Confidence            11000                              0001111    3455555555555   555555555555442   


Q ss_pred             hhCCCChhHHHHHHHHHHHHHhhh-----cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHH-H--HhcCChHHHH
Q 016114          220 YKGKEHPSFVTHLLNLAASYSRSK-----NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT-L--YHLNRDKEAE  291 (395)
Q Consensus       220 ~~~~~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~  291 (395)
                           .+.....++++|.+| ..|     ++++|+.+|+++.           +....++.+||.+ +  ...+++++|+
T Consensus       209 -----g~~~a~~~~~Lg~~y-~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~  271 (452)
T 3e4b_A          209 -----GTVTAQRVDSVARVL-GDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMM  271 (452)
T ss_dssp             -----TCSCHHHHHHHHHHH-TCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred             -----CCHHHHHHHHHHHHH-hCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHH
Confidence                 122223334555555 223     4555555555442           2334455666665 3  3456666666


Q ss_pred             HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC-----CchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Q 016114          292 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG-----EDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYL  366 (395)
Q Consensus       292 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  366 (395)
                      .+|+++.+       .++   ..+...||.+|. .|     +++ +|+.+|+++.        +.+   ..++++||.+|
T Consensus       272 ~~~~~Aa~-------~g~---~~A~~~Lg~~y~-~G~g~~~d~~-~A~~~~~~Aa--------~g~---~~A~~~Lg~~y  328 (452)
T 3e4b_A          272 KYLDNGRA-------ADQ---PRAELLLGKLYY-EGKWVPADAK-AAEAHFEKAV--------GRE---VAADYYLGQIY  328 (452)
T ss_dssp             HHHHHHHH-------TTC---HHHHHHHHHHHH-HCSSSCCCHH-HHHHHHHTTT--------TTC---HHHHHHHHHHH
T ss_pred             HHHHHHHH-------CCC---HHHHHHHHHHHH-cCCCCCCCHH-HHHHHHHHHh--------CCC---HHHHHHHHHHH
Confidence            66666653       122   235566666665 34     455 5665555554        122   35666777666


Q ss_pred             HH----hcchhhhchhhHHHHH
Q 016114          367 DK----LGRKEEKFPLKKRLSN  384 (395)
Q Consensus       367 ~~----~g~~~~A~~~~~~a~~  384 (395)
                      ..    ..++++|..+|+++.+
T Consensus       329 ~~G~g~~~d~~~A~~~~~~Aa~  350 (452)
T 3e4b_A          329 RRGYLGKVYPQKALDHLLTAAR  350 (452)
T ss_dssp             HTTTTSSCCHHHHHHHHHHHHT
T ss_pred             HCCCCCCcCHHHHHHHHHHHHh
Confidence            65    2367777777777664

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.82  E-value=3.9e-18  Score=139.93  Aligned_cols=197  Identities=9%  Similarity=0.013  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      |.....+...+..+...|++++|+..+.++++..+.  .+........+..+|.++...|++++|+.++++++...... 
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-  148 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG-  148 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-
Confidence            444556677888999999999999999999875321  11223455667789999999999999999999999764331 


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                       .+......++..+|.+|...|++++|+.+|++++.+.+..  ++.+. ...++.++|.+|...|++++|+.++++++++
T Consensus       149 -~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          149 -IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             -SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence             2333456789999999999999999999999999887764  23333 3378999999999999999999999999998


Q ss_pred             HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHhh
Q 016114          173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEG-RELLEECLLITEKY  220 (395)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~  220 (395)
                      ....    .+......++.++|.+|...|++++| ..++++++.+.+..
T Consensus       226 ~~~~----~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          226 SCRI----NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHT----TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhc----CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            8642    34555678899999999999999999 88899999987654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.82  E-value=6.5e-18  Score=138.59  Aligned_cols=199  Identities=10%  Similarity=0.021  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      +.....+...+..+...|++++|...+++++.....  .++.......+..+|.++...|++++|+.++++++.+...  
T Consensus        72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~--  147 (293)
T 3u3w_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT--  147 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC--
T ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccC--ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc--
Confidence            444555566788889999999999999998874211  1111122455667999999999999999999999985322  


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                      ..+....+.++.++|.+|...|++++|+.+|+++++..+.. +.+.+..+.++.++|.+|..+|++++|+.++++++++.
T Consensus       148 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~  226 (293)
T 3u3w_A          148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            12233446689999999999999999999999999988764 23566788899999999999999999999999999998


Q ss_pred             HhcccCCCCchHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhhh
Q 016114          174 KDSNYMSLDDSIMENMRIDLAELLHIVGR-GQEGRELLEECLLITEKYK  221 (395)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~  221 (395)
                      ...    .+....+.++.++|.++...|+ +++|+.++++|+.+.+...
T Consensus       227 ~~~----~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~  271 (293)
T 3u3w_A          227 CRI----NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE  271 (293)
T ss_dssp             HHT----TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHc----CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            764    4556668889999999999995 6999999999999987653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.81  E-value=9.1e-18  Score=129.97  Aligned_cols=194  Identities=15%  Similarity=0.059  Sum_probs=153.9

Q ss_pred             HHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHH
Q 016114          112 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI  191 (395)
Q Consensus       112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  191 (395)
                      ...|++++|...++...        .+++....++..+|.++...|++++|+.++++++.+.+..    .+++....++.
T Consensus         3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~   70 (203)
T 3gw4_A            3 FEAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS----GDHTAEHRALH   70 (203)
T ss_dssp             ----CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----CCHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc----CCcHHHHHHHH
Confidence            46789999988554431        1334678899999999999999999999999999998863    45677788899


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchH
Q 016114          192 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS  271 (395)
Q Consensus       192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  271 (395)
                      ++|.++...|++++|+.++++++.+.+... .+......++.++|.++...|++++|..++++++.+....  .+.....
T Consensus        71 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~  147 (203)
T 3gw4_A           71 QVGMVERMAGNWDAARRCFLEERELLASLP-EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIA  147 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHH
Confidence            999999999999999999999999987532 2223677889999999999999999999999999987654  2334456


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Q 016114          272 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI  322 (395)
Q Consensus       272 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~  322 (395)
                      .++..+|.++...|++++|..++++++++..+.  .+......++..++.+
T Consensus       148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL--EDSEAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHhcccch
Confidence            678999999999999999999999999998775  3334444455554443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.81  E-value=8.4e-18  Score=130.18  Aligned_cols=193  Identities=15%  Similarity=0.129  Sum_probs=153.5

Q ss_pred             HhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 016114           70 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  149 (395)
Q Consensus        70 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  149 (395)
                      ...|++++|...++....        +++....++..+|.++...|++++|+.++++++.+.+..  .+.+....++.++
T Consensus         3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l   72 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQV   72 (203)
T ss_dssp             ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHH
Confidence            467899999885543311        344678899999999999999999999999999998764  3456678899999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHH
Q 016114          150 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  229 (395)
Q Consensus       150 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  229 (395)
                      |.++...|++++|+.++++++.+.+..   +.++.....++.++|.++...|++++|+.++++++.+.+...  +.....
T Consensus        73 ~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~  147 (203)
T 3gw4_A           73 GMVERMAGNWDAARRCFLEERELLASL---PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--DQVAIA  147 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHc---CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--chHHHH
Confidence            999999999999999999999998863   224446778889999999999999999999999999876543  334456


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 016114          230 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  279 (395)
Q Consensus       230 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  279 (395)
                      .++.++|.++...|++++|..++++++.+..+.  ++......++..++.
T Consensus       148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~  195 (203)
T 3gw4_A          148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL--EDSEAVNELMTRLNG  195 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHhcccc
Confidence            778999999999999999999999999988765  233334444444443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.81  E-value=5.8e-18  Score=133.61  Aligned_cols=171  Identities=16%  Similarity=0.160  Sum_probs=143.1

Q ss_pred             hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016114          101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  180 (395)
Q Consensus       101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  180 (395)
                      +..+..+|.++...|++++|+..|++++.+.       ++....++.++|.++...|++++|+..++++++.       .
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~   72 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-------NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------N   72 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------T
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-------CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-------C
Confidence            3788999999999999999999999999872       1122356777999999999999999999999974       2


Q ss_pred             CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh----hHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114          181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP----SFVTHLLNLAASYSRSKNFVEAERLLRICL  256 (395)
Q Consensus       181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  256 (395)
                      |+   ...++..+|.++...|++++|+..+++++.+.     ++++    ....++..+|.++...|++++|+..|++++
T Consensus        73 p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  144 (228)
T 4i17_A           73 YN---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT  144 (228)
T ss_dssp             CS---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence            33   35667899999999999999999999999863     2222    233678999999999999999999999998


Q ss_pred             HHHHHhhCCCCcc--hHHHHHHHHHHHHhcCCh---------------------------HHHHHHHHHHHHHH
Q 016114          257 DIMTKTVGPDDQS--ISFPMLHLGITLYHLNRD---------------------------KEAEKLVLEALYIR  301 (395)
Q Consensus       257 ~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~  301 (395)
                      +        .+|.  ...++.++|.++...|+.                           ++|+.++++++++.
T Consensus       145 ~--------~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          145 D--------VTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             T--------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             h--------cCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            7        3577  788999999999999988                           78888888887753

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.81  E-value=2e-17  Score=147.43  Aligned_cols=207  Identities=14%  Similarity=0.140  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHHH-------CCCHH-------HHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHH
Q 016114          144 MAMCSLAHAKCA-------NGNAE-------EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL  209 (395)
Q Consensus       144 ~~~~~la~~~~~-------~g~~~-------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  209 (395)
                      .++..+|..+..       .|+++       +|...++++++.      ..|+.   ..++..++.++...|++++|...
T Consensus       273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~------~~p~~---~~l~~~~~~~~~~~g~~~~A~~~  343 (530)
T 2ooe_A          273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------LLKKN---MLLYFAYADYEESRMKYEKVHSI  343 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT------TCSSC---HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH------hCccc---HHHHHHHHHHHHhcCCHHHHHHH
Confidence            456666776665       68876       777777777651      12232   45678899999999999999999


Q ss_pred             HHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHH-HHhcCChH
Q 016114          210 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT-LYHLNRDK  288 (395)
Q Consensus       210 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~  288 (395)
                      |++++++     .+.++  ..++..++.++...|++++|...|++++..        .|.....+...+.+ +...|+++
T Consensus       344 ~~~al~~-----~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~  408 (530)
T 2ooe_A          344 YNRLLAI-----EDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKS  408 (530)
T ss_dssp             HHHHHHS-----SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHhCc-----cccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChh
Confidence            9999974     12222  357889999999999999999999999862        23334444444444 34689999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHH-HHHHHHHHHHHHH
Q 016114          289 EAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE-VMLTLKKVVSYLD  367 (395)
Q Consensus       289 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~  367 (395)
                      +|...|+++++..     |+++   ..+..++.++...|+.+ +|...|++++..     .+.+|. ...++...+....
T Consensus       409 ~A~~~~e~al~~~-----p~~~---~~~~~~~~~~~~~g~~~-~Ar~~~~~al~~-----~~~~~~~~~~lw~~~~~~e~  474 (530)
T 2ooe_A          409 VAFKIFELGLKKY-----GDIP---EYVLAYIDYLSHLNEDN-NTRVLFERVLTS-----GSLPPEKSGEIWARFLAFES  474 (530)
T ss_dssp             HHHHHHHHHHHHH-----TTCH---HHHHHHHHHHTTTTCHH-HHHHHHHHHHHS-----CCSCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC-----CCCH---HHHHHHHHHHHhCCCHh-hHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHH
Confidence            9999999999875     4444   46788999999999999 999999999874     223332 3446667778888


Q ss_pred             HhcchhhhchhhHHHHHHHHH
Q 016114          368 KLGRKEEKFPLKKRLSNLRMK  388 (395)
Q Consensus       368 ~~g~~~~A~~~~~~a~~~~~~  388 (395)
                      ..|+.+.+..+++++++..++
T Consensus       475 ~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          475 NIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             HSSCHHHHHHHHHHHHHHTHH
T ss_pred             HcCCHHHHHHHHHHHHHHCch
Confidence            899999999999999998875

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.80  E-value=1.7e-17  Score=136.08  Aligned_cols=197  Identities=11%  Similarity=-0.065  Sum_probs=157.9

Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 016114          140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  219 (395)
Q Consensus       140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  219 (395)
                      +.....+...+..+...|++++|+..+.++++....    .+........+..+|.++...|++++|+.++++++.+...
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  147 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY----HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT  147 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC----CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC----ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence            344456677888999999999999999999875321    1122234455677999999999999999999999976543


Q ss_pred             hhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc-hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016114          220 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-ISFPMLHLGITLYHLNRDKEAEKLVLEAL  298 (395)
Q Consensus       220 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al  298 (395)
                      .  .+......++.++|.+|...|++++|+.++++++++....  ++.+. ...++.++|.+|..+|++++|+.++++++
T Consensus       148 ~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          148 G--IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             S--SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             C--CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            2  2334457789999999999999999999999999877654  22232 23789999999999999999999999999


Q ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHH-HHHHHHHHHHHHhc
Q 016114          299 YIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL-LELLKRVLRIQERE  347 (395)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A-~~~~~~al~~~~~~  347 (395)
                      ++....  .+......++..+|.++...|+++ +| ..++++++.+++..
T Consensus       224 ~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~-~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          224 EISCRI--NSMALIGQLYYQRGECLRKLEYEE-AEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHHHT--TBCSSHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHhc--CcHHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHh
Confidence            988543  445556788999999999999999 99 88899999998763

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.80  E-value=2e-17  Score=135.61  Aligned_cols=194  Identities=10%  Similarity=0.051  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh---hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114           57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL---VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  133 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  133 (395)
                      .....+...+..+...|++++|...+++++..     .+..+..   ...+..+|.++...|++++|+.++++++.+...
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~  147 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK-----EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT  147 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-----ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence            44445556678889999999999999998874     1223332   345566899999999999999999999985322


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016114          134 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  213 (395)
Q Consensus       134 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  213 (395)
                        ..+....+.++.++|.+|...|++++|+.+|+++++..+..   +.+.+....++.++|.+|...|++++|+.+++++
T Consensus       148 --~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a  222 (293)
T 3u3w_A          148 --GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL---HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             --CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence              12233456789999999999999999999999999988763   3466777889999999999999999999999999


Q ss_pred             HHHHHhhhCCCChhHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHh
Q 016114          214 LLITEKYKGKEHPSFVTHLLNLAASYSRSK-NFVEAERLLRICLDIMTKT  262 (395)
Q Consensus       214 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~  262 (395)
                      +++.....  +.+..+.++.++|.++...| ++++|..++++++.+++..
T Consensus       223 l~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          223 IEISCRIN--SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHHHHTT--BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcC--cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            99987654  45567889999999999999 5799999999999988765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.79  E-value=3.7e-17  Score=145.70  Aligned_cols=318  Identities=9%  Similarity=0.008  Sum_probs=214.7

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      +|....++..++.. ...|++++|...|+++++.        .|.....+..++..+...|++++|...|++++..    
T Consensus         9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~----   75 (530)
T 2ooe_A            9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ--------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK----   75 (530)
T ss_dssp             CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT----
T ss_pred             CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Confidence            35555667777774 6789999999999999875        3444667888999999999999999999999875    


Q ss_pred             cCCCChhhhhhHHhHHH-HHHHcCChHHHHH----HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH---------CCC
Q 016114           93 RGTESADLVLPLFSLGS-LFIKEGKAVDAES----VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---------NGN  158 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~  158 (395)
                          .|. ...+...+. +....|++++|.+    .|++++..    .|. ++.....+...+.....         .|+
T Consensus        76 ----~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  145 (530)
T 2ooe_A           76 ----VLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IGM-EIMSYQIWVDYINFLKGVEAVGSYAENQR  145 (530)
T ss_dssp             ----CCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TTT-STTCHHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred             ----CCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CCC-CcccHHHHHHHHHHHhcCCCcccHHHHhH
Confidence                232 345555553 4456788888776    55555443    221 22222333333333332         455


Q ss_pred             HHHHHHHHHHHHHH-----------------------------------------HH-------hccc----CCCC----
Q 016114          159 AEEAVELYKKALRV-----------------------------------------IK-------DSNY----MSLD----  182 (395)
Q Consensus       159 ~~~A~~~~~~a~~~-----------------------------------------~~-------~~~~----~~~~----  182 (395)
                      +++|..+|++++..                                         ..       ....    ..+.    
T Consensus       146 ~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~  225 (530)
T 2ooe_A          146 ITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ  225 (530)
T ss_dssp             HHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred             HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence            55555555554421                                         00       0000    0000    


Q ss_pred             ------------------------c------------------hHHHHHHHHHHHHHHH-------cCChH-------HH
Q 016114          183 ------------------------D------------------SIMENMRIDLAELLHI-------VGRGQ-------EG  206 (395)
Q Consensus       183 ------------------------~------------------~~~~~~~~~la~~~~~-------~g~~~-------~A  206 (395)
                                              .                  |....++..+|..+..       .|+++       +|
T Consensus       226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A  305 (530)
T 2ooe_A          226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA  305 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence                                    0                  0112345556666665       68876       66


Q ss_pred             HHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcch-HHHHHHHHHHHHhcC
Q 016114          207 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI-SFPMLHLGITLYHLN  285 (395)
Q Consensus       207 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g  285 (395)
                      +..+++++..       ..|.....+..++.++...|++++|...|++++.+        .|.. ..++..++.++...|
T Consensus       306 ~~~~~~Al~~-------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~  370 (530)
T 2ooe_A          306 ANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--------EDIDPTLVYIQYMKFARRAE  370 (530)
T ss_dssp             HHHHHHHTTT-------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------SSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--------cccCchHHHHHHHHHHHHhc
Confidence            7777766641       13555678889999999999999999999999983        2332 357889999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH-HHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 016114          286 RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI-QTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS  364 (395)
Q Consensus       286 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  364 (395)
                      ++++|...|+++++..     +...   ..+...+.+ +...|+.+ +|...|+++++..     +++   ..++..++.
T Consensus       371 ~~~~A~~~~~~Al~~~-----~~~~---~~~~~~a~~~~~~~~~~~-~A~~~~e~al~~~-----p~~---~~~~~~~~~  433 (530)
T 2ooe_A          371 GIKSGRMIFKKAREDA-----RTRH---HVYVTAALMEYYCSKDKS-VAFKIFELGLKKY-----GDI---PEYVLAYID  433 (530)
T ss_dssp             HHHHHHHHHHHHHTCT-----TCCT---HHHHHHHHHHHHHTCCHH-HHHHHHHHHHHHH-----TTC---HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcc-----CCch---HHHHHHHHHHHHHcCChh-HHHHHHHHHHHHC-----CCC---HHHHHHHHH
Confidence            9999999999998732     2222   223333433 34689998 9999999999864     333   467788999


Q ss_pred             HHHHhcchhhhchhhHHHHHH
Q 016114          365 YLDKLGRKEEKFPLKKRLSNL  385 (395)
Q Consensus       365 ~~~~~g~~~~A~~~~~~a~~~  385 (395)
                      ++...|+.++|..+|++++..
T Consensus       434 ~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          434 YLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHhCCCHhhHHHHHHHHHhc
Confidence            999999999999999999875

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.5e-16  Score=138.29  Aligned_cols=242  Identities=14%  Similarity=0.128  Sum_probs=192.6

Q ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC---------ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114           62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE---------SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  132 (395)
Q Consensus        62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  132 (395)
                      ...-|..+...|+|++|++.|.++++..+......         ......++..+|.+|...|++++|.+++.+++....
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            34457778899999999999999987633211000         012234688999999999999999999999999876


Q ss_pred             HHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114          133 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  212 (395)
Q Consensus       133 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  212 (395)
                      ..  ++......+...++.++...|++++|+.++++++.+....    .+......++.++|.++...|++++|..++++
T Consensus        87 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  160 (434)
T 4b4t_Q           87 QF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE----KRVFLKHSLSIKLATLHYQKKQYKDSLALIND  160 (434)
T ss_dssp             TS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS----SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             Hc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence            53  1223345567788999999999999999999999998764    34455677889999999999999999999999


Q ss_pred             HHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHH
Q 016114          213 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  292 (395)
Q Consensus       213 al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  292 (395)
                      ++.......  +.+....++..++.+|...|++++|..++++++.+..... ..+......+..+|.++...|++++|..
T Consensus       161 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~y~~A~~  237 (434)
T 4b4t_Q          161 LLREFKKLD--DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-CPTQTVAELDLMSGILHCEDKDYKTAFS  237 (434)
T ss_dssp             HHHHHTTSS--CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             HHHHHHhcc--cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            988766543  5678889999999999999999999999999998776552 1223346778889999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCChHH
Q 016114          293 LVLEALYIREIAFGKDSLPV  312 (395)
Q Consensus       293 ~~~~al~~~~~~~~~~~~~~  312 (395)
                      +|.++++.............
T Consensus       238 ~~~~a~~~~~~~~~~~~~~~  257 (434)
T 4b4t_Q          238 YFFESFESYHNLTTHNSYEK  257 (434)
T ss_dssp             HHHHHHHHHHHTTTSSCHHH
T ss_pred             HHHHHHHHhhhhhhhhhHHH
Confidence            99999998877655444433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.79  E-value=7.4e-17  Score=133.26  Aligned_cols=223  Identities=14%  Similarity=0.058  Sum_probs=174.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHH-------hhCch-------hHHHHHHHHHHHHHHHhcCCCChh
Q 016114           34 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG-------SIGRA-------KKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        34 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      ++|+..|++++...        |....++..+|..+.       ..|++       ++|...|++++..       -.|.
T Consensus        33 ~~a~~~~~~al~~~--------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-------~~p~   97 (308)
T 2ond_A           33 KRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLKK   97 (308)
T ss_dssp             HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-------TTTT
T ss_pred             HHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-------hCcc
Confidence            78889999998863        344566777777775       35886       8999999999872       1466


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  179 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  179 (395)
                      ...++..+|.++...|++++|...|++++++     .+.++.  .++..+|.++...|++++|...|+++++.       
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------  163 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKARED-------  163 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTS-------
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------
Confidence            6788999999999999999999999999975     233332  27889999999999999999999999874       


Q ss_pred             CCCchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114          180 SLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  258 (395)
Q Consensus       180 ~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  258 (395)
                      .+..   ..++...+.+.. ..|++++|...|+++++..        |.....+..++.++...|++++|..+|++++..
T Consensus       164 ~p~~---~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          164 ARTR---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             TTCC---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            2222   223344444433 3799999999999999864        334567889999999999999999999999872


Q ss_pred             HHHhhCCCCc-chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          259 MTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       259 ~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      .     ...| .....+..++..+...|++++|...++++++..
T Consensus       233 ~-----~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~  271 (308)
T 2ond_A          233 G-----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             S-----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             c-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence            0     1133 356678888999999999999999999998865

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.79  E-value=9.5e-17  Score=132.59  Aligned_cols=225  Identities=15%  Similarity=0.132  Sum_probs=176.1

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHH-------cCCh-------HHHHHHHHHHHHHHHHHhCCCChh
Q 016114           76 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-------EGKA-------VDAESVFSRILKIYTKVYGENDGR  141 (395)
Q Consensus        76 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~al~~~~~~~~~~~~~  141 (395)
                      ++|+..|++++..        .|....++..+|..+..       .|++       ++|...|++++...       +|.
T Consensus        33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-------~p~   97 (308)
T 2ond_A           33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-------LKK   97 (308)
T ss_dssp             HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-------TTT
T ss_pred             HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-------Ccc
Confidence            6888899999886        46667888888888764       5886       88999999988721       455


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhh
Q 016114          142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  221 (395)
Q Consensus       142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  221 (395)
                      ...++..+|.++...|++++|...|++++++       .|..+.  .++.++|.++...|++++|+..|+++++..    
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----  164 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-------EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKAREDA----  164 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-------SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTST----
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----
Confidence            5678899999999999999999999999984       233332  267889999999999999999999998742    


Q ss_pred             CCCChhHHHHHHHHHHHHH-hhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114          222 GKEHPSFVTHLLNLAASYS-RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  300 (395)
Q Consensus       222 ~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  300 (395)
                          |.....+...+.+.. ..|++++|...|++++..        .|.....+..++.++...|++++|+.+|++++..
T Consensus       165 ----p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          165 ----RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             ----TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             ----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence                222334444554433 369999999999999985        2445678899999999999999999999999873


Q ss_pred             HHHHcCCCCh-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114          301 REIAFGKDSL-PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  346 (395)
Q Consensus       301 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  346 (395)
                      .     +..| .....+..++......|+.+ .|...++++++....
T Consensus       233 ~-----~l~p~~~~~l~~~~~~~~~~~g~~~-~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          233 G-----SLPPEKSGEIWARFLAFESNIGDLA-SILKVEKRRFTAFRE  273 (308)
T ss_dssp             S-----SSCGGGCHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHTTT
T ss_pred             c-----CCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHccc
Confidence            1     1123 23456778888999999999 999999999987644

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.2e-16  Score=138.97  Aligned_cols=241  Identities=10%  Similarity=0.029  Sum_probs=194.3

Q ss_pred             hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC---------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114          103 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN---------DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus       103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                      +....|..+...|++++|++.|.++++..+......         ......++..+|.+|...|++++|.+++.+++...
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            345567788899999999999999987643221000         11234578899999999999999999999999987


Q ss_pred             HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114          174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  253 (395)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  253 (395)
                      ...    ++......+...++.++...|++++|+.++++++.+.....  +.+....++.++|.++...|++++|..+++
T Consensus        86 ~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  159 (434)
T 4b4t_Q           86 MQF----AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALIN  159 (434)
T ss_dssp             HTS----CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHc----cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence            653    33444456677889999999999999999999999887654  455677889999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHH
Q 016114          254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL  333 (395)
Q Consensus       254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  333 (395)
                      +++......  .+.+....++..++.+|...|++++|..++++++.+..... ..+...+..+..+|.++...|++. +|
T Consensus       160 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~y~-~A  235 (434)
T 4b4t_Q          160 DLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-CPTQTVAELDLMSGILHCEDKDYK-TA  235 (434)
T ss_dssp             HHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSSSCHH-HH
T ss_pred             HHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHhHH-HH
Confidence            998866544  45677888999999999999999999999999999876652 222344677888999999999999 99


Q ss_pred             HHHHHHHHHHHHhccCCCCH
Q 016114          334 LELLKRVLRIQEREFGSESE  353 (395)
Q Consensus       334 ~~~~~~al~~~~~~~~~~~~  353 (395)
                      ..+|.+++..+.........
T Consensus       236 ~~~~~~a~~~~~~~~~~~~~  255 (434)
T 4b4t_Q          236 FSYFFESFESYHNLTTHNSY  255 (434)
T ss_dssp             HHHHHHHHHHHHHTTTSSCH
T ss_pred             HHHHHHHHHHhhhhhhhhhH
Confidence            99999999988776554443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.77  E-value=1.4e-16  Score=125.21  Aligned_cols=177  Identities=12%  Similarity=0.025  Sum_probs=145.7

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      +..++.+|..+...|++++|+..|++++..     .++++....++..+|.++...|++++|+..|+++++.     .|+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~   73 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT   73 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcC
Confidence            456789999999999999999999999986     3444556678999999999999999999999999986     345


Q ss_pred             ChhhhhhHHhHHHHHHH------------------cCChHHHHHHHHHHHHHHHHHhCCCChhHHH--------------
Q 016114           97 SADLVLPLFSLGSLFIK------------------EGKAVDAESVFSRILKIYTKVYGENDGRVGM--------------  144 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--------------  144 (395)
                      ++....+++.+|.++..                  .|++++|+..|+++++..     |+++....              
T Consensus        74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~  148 (225)
T 2yhc_A           74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAK  148 (225)
T ss_dssp             CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHH
Confidence            55566688889988876                  578999999999998763     33333222              


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114          145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  215 (395)
Q Consensus       145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  215 (395)
                      ....+|.+|...|++++|+..|+++++..       |+.+....++..+|.++...|++++|+..++.+..
T Consensus       149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-------PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-------cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence            22578999999999999999999999863       55666677889999999999999999999987665

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.77  E-value=3.2e-16  Score=123.09  Aligned_cols=177  Identities=13%  Similarity=0.067  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114           59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      ...++.+|..+...|++++|+..|++++..     .++++....+++.+|.++...|++++|+..|+++++.     .|+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~   73 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT   73 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcC
Confidence            346788899999999999999999999986     3445566788999999999999999999999999987     355


Q ss_pred             ChhHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHhcccCCCCchHHH-------------
Q 016114          139 DGRVGMAMCSLAHAKCA------------------NGNAEEAVELYKKALRVIKDSNYMSLDDSIME-------------  187 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-------------  187 (395)
                      ++....++..+|.++..                  .|++++|+..|+++++..       |+.+...             
T Consensus        74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~l~~~~~~~  146 (225)
T 2yhc_A           74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDATKRLVFLKDRL  146 (225)
T ss_dssp             CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHHHHHHHHHHHH
Confidence            66666788888888875                  679999999999998753       3333222             


Q ss_pred             -HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          188 -NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       188 -~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                       .....+|.+|...|++++|+..|+++++..     ++++....++..+|.++...|++++|+..++.+..
T Consensus       147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence             122578999999999999999999999863     34566678899999999999999999999987765

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.77  E-value=1.1e-17  Score=142.14  Aligned_cols=123  Identities=15%  Similarity=0.071  Sum_probs=117.8

Q ss_pred             HHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 016114          198 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL  277 (395)
Q Consensus       198 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  277 (395)
                      ...|+|++|+.++++++++.++.+|++||.++.++.+||.+|..+|+|++|+.++++++.+.++.+|++||.++..+.+|
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 016114          278 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  320 (395)
Q Consensus       278 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  320 (395)
                      |.+|..+|++++|+.++++|+++....+|++||.+.....+|.
T Consensus       389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            9999999999999999999999999999999999988776654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.76  E-value=1.2e-17  Score=141.92  Aligned_cols=122  Identities=13%  Similarity=0.019  Sum_probs=117.6

Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 016114          241 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  320 (395)
Q Consensus       241 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  320 (395)
                      ..|++++|+.++++++++.++.+|++||.++.++.+||.+|..+|+|++|+.++++++++.++.+|++||+++..+.+||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 016114          321 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVV  363 (395)
Q Consensus       321 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  363 (395)
                      .+|..+|+++ +|+.+|++|+++.+..+|++||.+..+..+|.
T Consensus       390 ~~~~~qg~~~-eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          390 RLYMGLENKA-AGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHTTCHH-HHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHhccCHH-HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            9999999999 99999999999999999999999998877664

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.76  E-value=4.9e-17  Score=123.81  Aligned_cols=172  Identities=16%  Similarity=0.161  Sum_probs=146.6

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      ++..+..+..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|+..+++++..    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----   71 (186)
T 3as5_A            4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--------AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD----   71 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence            44567788999999999999999999999987641        223567889999999999999999999999886    


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                          .|....++..+|.++...|++++|..++++++..        .|....++..+|.++...|++++|+.+++++++.
T Consensus        72 ----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  139 (186)
T 3as5_A           72 ----APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL  139 (186)
T ss_dssp             ----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence                3555678899999999999999999999999986        2334567889999999999999999999999885


Q ss_pred             HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114          173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  218 (395)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  218 (395)
                      .       ++.   ..++..+|.++...|++++|..++++++....
T Consensus       140 ~-------~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  175 (186)
T 3as5_A          140 R-------PNE---GKVHRAIAFSYEQMGRHEEALPHFKKANELDE  175 (186)
T ss_dssp             C-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             C-------ccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            2       222   45668899999999999999999999998753

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.75  E-value=3.7e-16  Score=116.19  Aligned_cols=159  Identities=16%  Similarity=0.186  Sum_probs=139.0

Q ss_pred             CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114           11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   90 (395)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   90 (395)
                      .+++..+.++..+|.++...|++++|+.++++++++.+..  .+....+.++..+|.++...|++++|+.++++++.+..
T Consensus         3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   80 (164)
T 3ro3_A            3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR   80 (164)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3556778899999999999999999999999999998764  34456778899999999999999999999999999987


Q ss_pred             HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114           91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  170 (395)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  170 (395)
                      ...  +.+....++..+|.++...|++++|..++++++.+.+..  .+.+....++..+|.++...|++++|..++++++
T Consensus        81 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           81 QLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HhC--CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            643  455667889999999999999999999999999998764  2445677889999999999999999999999999


Q ss_pred             HHHHh
Q 016114          171 RVIKD  175 (395)
Q Consensus       171 ~~~~~  175 (395)
                      ++.++
T Consensus       157 ~~~~~  161 (164)
T 3ro3_A          157 EISRE  161 (164)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            98754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.75  E-value=5.4e-16  Score=115.31  Aligned_cols=158  Identities=15%  Similarity=0.137  Sum_probs=138.2

Q ss_pred             ChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114           54 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  133 (395)
Q Consensus        54 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  133 (395)
                      +.+..+.++..+|.++...|++++|+.++++++.+.....  +......++..+|.++...|++++|..++++++.+.+.
T Consensus         4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A            4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4456788899999999999999999999999999987753  45566778999999999999999999999999999876


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016114          134 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  213 (395)
Q Consensus       134 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  213 (395)
                      .  ++.+....++.++|.++...|++++|+.++++++++.+..    .+++....++..+|.++...|++++|+.+++++
T Consensus        82 ~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           82 L--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL----KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             h--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            4  3445567889999999999999999999999999998763    456667788899999999999999999999999


Q ss_pred             HHHHHh
Q 016114          214 LLITEK  219 (395)
Q Consensus       214 l~~~~~  219 (395)
                      +++.++
T Consensus       156 ~~~~~~  161 (164)
T 3ro3_A          156 LEISRE  161 (164)
T ss_dssp             HHHHTT
T ss_pred             HHHHHH
Confidence            988654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.75  E-value=3.5e-17  Score=139.60  Aligned_cols=133  Identities=10%  Similarity=-0.034  Sum_probs=126.3

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHH
Q 016114          194 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP  273 (395)
Q Consensus       194 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  273 (395)
                      ..-+..+|++++|+..+++++++.++.+|++||.++.++.++|.+|..+|+|++|+.++++++.+.++.+|++||.++..
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc
Q 016114          274 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL  326 (395)
Q Consensus       274 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~  326 (395)
                      +.+||.+|..+|++++|+.++++|+++....+|++||.+..++.+|+.+....
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998887654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.75  E-value=5.4e-17  Score=123.59  Aligned_cols=174  Identities=18%  Similarity=0.122  Sum_probs=147.7

Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q 016114          184 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  263 (395)
Q Consensus       184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  263 (395)
                      ......+..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|..++++++..     
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----   71 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-----   71 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence            344567789999999999999999999988653        2344678889999999999999999999999874     


Q ss_pred             CCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114          264 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  343 (395)
Q Consensus       264 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  343 (395)
                         .|....++..+|.++...|++++|..++++++...     +.   ....+..+|.++...|+++ +|+.++++++..
T Consensus        72 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~a~~~~~~~~~~-~A~~~~~~~~~~  139 (186)
T 3as5_A           72 ---APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-----PI---NFNVRFRLGVALDNLGRFD-EAIDSFKIALGL  139 (186)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----cH---hHHHHHHHHHHHHHcCcHH-HHHHHHHHHHhc
Confidence               35566788999999999999999999999998753     33   3456889999999999999 999999999975


Q ss_pred             HHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          344 QEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                      .     +.   ...++..+|.++...|++++|..++++++.+.++..
T Consensus       140 ~-----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          140 R-----PN---EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             C-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             C-----cc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence            2     22   356789999999999999999999999999887643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.75  E-value=3.6e-17  Score=139.55  Aligned_cols=134  Identities=9%  Similarity=-0.061  Sum_probs=127.0

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHH
Q 016114          236 AASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEA  315 (395)
Q Consensus       236 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  315 (395)
                      ..-+..+|++++|+..+++++++..+.+|++||.++.++.++|.+|..+|++++|+.++++++.+.+..+|++||.++..
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc
Q 016114          316 LDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLG  370 (395)
Q Consensus       316 ~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  370 (395)
                      +++||.+|..+|+++ +|+.++++|+++.+..+|++||.+..++.+|+.+...++
T Consensus       374 l~nLa~~~~~~g~~~-eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFP-QAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence            999999999999999 999999999999999999999999999999998876543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.75  E-value=3.8e-16  Score=120.98  Aligned_cols=165  Identities=15%  Similarity=0.096  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHH----------------HHHHHHhhCchhHHHH
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG----------------MAKVLGSIGRAKKAVE   80 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~   80 (395)
                      +..+...|..+...|++++|+..|++++..        .|....++..                +|.++...|++++|+.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~   75 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL   75 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            445678999999999999999999999986        3455566677                9999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCH-
Q 016114           81 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA-  159 (395)
Q Consensus        81 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-  159 (395)
                      .|++++++        .|....++..+|.++...|++++|+..|++++++        +|....++.++|.+|...|+. 
T Consensus        76 ~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           76 FYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHH
Confidence            99999987        5677889999999999999999999999999987        455567899999999776643 


Q ss_pred             -HHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          160 -EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       160 -~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                       ..+...+.+++.         +++.  ...+..+|.++...|++++|+.+|++++++
T Consensus       140 ~~~~~~~~~~~~~---------~~~~--~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          140 KKKLETDYKKLSS---------PTKM--QYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHC---C---------CCHH--HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhC---------CCch--hHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence             344455544321         2222  234577899999999999999999999875

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.74  E-value=2e-17  Score=120.85  Aligned_cols=147  Identities=15%  Similarity=0.102  Sum_probs=121.1

Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhh
Q 016114           22 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  101 (395)
Q Consensus        22 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  101 (395)
                      .||.++...|++++|+..+++++.        ..|.....++.+|.+|...|++++|+..|++++++        .|...
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~--------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~   65 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTP--------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP   65 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSC--------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcc--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            478999999999999999999865        35667778889999999999999999999999997        57778


Q ss_pred             hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHhcccCC
Q 016114          102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL-YKKALRVIKDSNYMS  180 (395)
Q Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~a~~~~~~~~~~~  180 (395)
                      .++..+|.++...|++++|+..|++++++        +|....++.++|.++...|++++|... +++++++       .
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-------~  130 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-------F  130 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-------S
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-------C
Confidence            89999999999999999999999999987        455567899999999999999887765 5899986       3


Q ss_pred             CCchHHHHHHHHHHHHHHHcCC
Q 016114          181 LDDSIMENMRIDLAELLHIVGR  202 (395)
Q Consensus       181 ~~~~~~~~~~~~la~~~~~~g~  202 (395)
                      |+++.   ++...+.++...|+
T Consensus       131 P~~~~---~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          131 PGSPA---VYKLKEQLLDCEGE  149 (150)
T ss_dssp             TTCHH---HHHHHHHHHHTCCC
T ss_pred             cCCHH---HHHHHHHHHHHhCc
Confidence            44443   44667778777775

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.74  E-value=5.4e-16  Score=120.11  Aligned_cols=166  Identities=17%  Similarity=0.149  Sum_probs=133.3

Q ss_pred             hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH----------------HHHHHHHCCCHHHHHH
Q 016114          101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS----------------LAHAKCANGNAEEAVE  164 (395)
Q Consensus       101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~  164 (395)
                      +..+...|..+...|++++|+..|++++..        +|....++..                +|.++...|++++|+.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~   75 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL   75 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            445677899999999999999999999987        5666667777                9999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhc
Q 016114          165 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  244 (395)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  244 (395)
                      .|++++++.       |+.   ..++.++|.++...|++++|+..|++++++        +|....++.++|.+|...|+
T Consensus        76 ~~~~al~~~-------p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           76 FYKELLQKA-------PNN---VDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHHC-------TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhH
Confidence            999999862       333   456789999999999999999999999986        35566789999999987765


Q ss_pred             H--HHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          245 F--VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       245 ~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      .  ..+...+.+++.       +  +....+++.+|.++...|++++|+.+|++++++.
T Consensus       138 ~~~~~~~~~~~~~~~-------~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  187 (208)
T 3urz_A          138 QEKKKLETDYKKLSS-------P--TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF  187 (208)
T ss_dssp             HHHHHHHHHHC---C-------C--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHhC-------C--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            4  444555554432       1  2223466788999999999999999999999854

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.74  E-value=3.4e-17  Score=149.46  Aligned_cols=200  Identities=14%  Similarity=0.110  Sum_probs=159.6

Q ss_pred             HhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 016114           70 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  149 (395)
Q Consensus        70 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  149 (395)
                      ...|++++|+..+++++...-......+|....++..+|.++...|++++|+..|+++++.        +|....++.++
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l  473 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYR  473 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHH
Confidence            7889999999999999822111112246778889999999999999999999999999987        34456789999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHH
Q 016114          150 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  229 (395)
Q Consensus       150 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  229 (395)
                      |.++...|++++|+..|++++++.       |+.   ..++.++|.++...|++++ +..|++++++        +|...
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l~-------P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~  534 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDTF-------PGE---LAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVI  534 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHS-------TTC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-------CCC---hHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchH
Confidence            999999999999999999999963       333   3456899999999999999 9999999986        35556


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHHHHH
Q 016114          230 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA-EKLVLEALYIREIA  304 (395)
Q Consensus       230 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~  304 (395)
                      .++.++|.++...|++++|+..|+++++        .+|....++.++|.++...++.+++ ...++++++.....
T Consensus       535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~--------l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          535 SAAFGLARARSAEGDRVGAVRTLDEVPP--------TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSCT--------TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhcc--------cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            7899999999999999999999999886        3677888999999999888776655 66777777766554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.73  E-value=2.4e-17  Score=120.39  Aligned_cols=147  Identities=12%  Similarity=0.104  Sum_probs=119.2

Q ss_pred             HHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114           64 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  143 (395)
Q Consensus        64 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  143 (395)
                      .||.++...|++++|+..+++++..        .|.....++.+|.+|...|++++|+.+|++++++        +|...
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~   65 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP   65 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            4788999999999999999988653        5777788999999999999999999999999987        45666


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHhhhC
Q 016114          144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL-LEECLLITEKYKG  222 (395)
Q Consensus       144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~  222 (395)
                      .++..+|.++...|++++|+..|++++++.       |+.   ..++.++|.++...|++++|... +++++++      
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~---~~~~~~la~~~~~~~~~~~aa~~~~~~al~l------  129 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVELN-------PTQ---KDLVLKIAELLCKNDVTDGRAKYWVERAAKL------  129 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------
Confidence            789999999999999999999999999862       333   45678999999999999887765 5899886      


Q ss_pred             CCChhHHHHHHHHHHHHHhhhc
Q 016114          223 KEHPSFVTHLLNLAASYSRSKN  244 (395)
Q Consensus       223 ~~~~~~~~~~~~la~~~~~~~~  244 (395)
                        +|....++...+.++..+|+
T Consensus       130 --~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          130 --FPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             --STTCHHHHHHHHHHHHTCCC
T ss_pred             --CcCCHHHHHHHHHHHHHhCc
Confidence              23444567777888877764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.73  E-value=1.9e-17  Score=151.11  Aligned_cols=200  Identities=15%  Similarity=0.040  Sum_probs=157.6

Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhH
Q 016114           28 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL  107 (395)
Q Consensus        28 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  107 (395)
                      ...|++++|+..++++++..-......+|....++..+|.++...|++++|+..|+++++.        .|....+++.+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l  473 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYR  473 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHH
Confidence            7889999999999999821111111223555678899999999999999999999999987        46667899999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHH
Q 016114          108 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME  187 (395)
Q Consensus       108 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  187 (395)
                      |.++...|++++|+..|++++++        +|....++.++|.++...|++++ +..|++++++.       ++.   .
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-------P~~---~  534 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDT--------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-------DGV---I  534 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-------TTC---H
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-------Cch---H
Confidence            99999999999999999999987        34445788999999999999999 99999999862       333   3


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHH-HHHHHHHHHHHHHh
Q 016114          188 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA-ERLLRICLDIMTKT  262 (395)
Q Consensus       188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~a~~~~~~~  262 (395)
                      .++.++|.++...|++++|+..|++++++        +|....++.++|.++...++.+++ ...+++++......
T Consensus       535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          535 SAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            46799999999999999999999998764        567788899999999887775555 56666666655444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.73  E-value=1.4e-15  Score=141.88  Aligned_cols=193  Identities=18%  Similarity=0.184  Sum_probs=112.2

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhh
Q 016114           23 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  102 (395)
Q Consensus        23 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  102 (395)
                      +|.++...|.+++|..+|+++-..         ...      +...+...|++++|.++++++             ....
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~---------~~A------~~VLie~i~nldrAiE~Aerv-------------n~p~ 1106 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVN---------TSA------VQVLIEHIGNLDRAYEFAERC-------------NEPA 1106 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCH---------HHH------HHHHHHHHhhHHHHHHHHHhc-------------CCHH
Confidence            466777777777777777765211         010      111222445555555554432             2245


Q ss_pred             hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCC
Q 016114          103 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  182 (395)
Q Consensus       103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  182 (395)
                      +|..+|..+...|++++|+..|.++          ++   ...+..+|.++...|++++|+++|..+.+..+.       
T Consensus      1107 vWsqLAKAql~~G~~kEAIdsYiKA----------dD---~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e------- 1166 (1630)
T 1xi4_A         1107 VWSQLAKAQLQKGMVKEAIDSYIKA----------DD---PSSYMEVVQAANTSGNWEELVKYLQMARKKARE------- 1166 (1630)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhc----------CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-------
Confidence            6777777777777777777777664          12   235566777777777777777777777664311       


Q ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q 016114          183 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  262 (395)
Q Consensus       183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  262 (395)
                      +.    +-..+|.+|.+.+++++. +.|.   .         .+.. ..+..+|..+...|++++|..+|.++       
T Consensus      1167 ~~----Idt~LafaYAKl~rleel-e~fI---~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A         1167 SY----VETELIFALAKTNRLAEL-EEFI---N---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred             cc----ccHHHHHHHHhhcCHHHH-HHHH---h---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence            00    012366666666666642 2221   0         1112 23445777777777777777777654       


Q ss_pred             hCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016114          263 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  297 (395)
Q Consensus       263 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  297 (395)
                               ..|..++.++...|++++|++.+++|
T Consensus      1222 ---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A         1222 ---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred             ---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence                     13556677777777777777777666

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.70  E-value=7.5e-16  Score=108.58  Aligned_cols=119  Identities=13%  Similarity=0.122  Sum_probs=103.5

Q ss_pred             CCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Q 016114           10 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL   89 (395)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   89 (395)
                      ..-+|..+..+..+|..++..|+|++|+..|++++++        .|....++..+|.++...|++++|+..|++++++ 
T Consensus         6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-   76 (126)
T 4gco_A            6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL-   76 (126)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-
Confidence            3467999999999999999999999999999999986        2344678899999999999999999999999987 


Q ss_pred             HHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 016114           90 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  152 (395)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  152 (395)
                             +|....++..+|.++..+|++++|+..|++++++        +|....++..++.+
T Consensus        77 -------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~  124 (126)
T 4gco_A           77 -------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNC  124 (126)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred             -------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHh
Confidence                   5677889999999999999999999999999987        34444566666654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.66  E-value=1.1e-13  Score=129.37  Aligned_cols=253  Identities=14%  Similarity=0.011  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC---
Q 016114           60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG---  136 (395)
Q Consensus        60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---  136 (395)
                      .+|..+|.++...|++++|+..|.++             +....+..+|.++...|++++|++++..+....+...-   
T Consensus      1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~ 1172 (1630)
T 1xi4_A         1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETE 1172 (1630)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHH
Confidence            45667777777777777777777553             22345566777777777777777777766553210000   


Q ss_pred             -----------------CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHH
Q 016114          137 -----------------ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI  199 (395)
Q Consensus       137 -----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  199 (395)
                                       -..+.. ..+..+|..+...|+|++|..+|.++-                  .|..++.++..
T Consensus      1173 LafaYAKl~rleele~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~------------------ny~rLA~tLvk 1233 (1630)
T 1xi4_A         1173 LIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS------------------NFGRLASTLVH 1233 (1630)
T ss_pred             HHHHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhh------------------HHHHHHHHHHH
Confidence                             000111 122334444444444444444444431                  12334444444


Q ss_pred             cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Q 016114          200 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  279 (395)
Q Consensus       200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  279 (395)
                      .|++++|++.+++|..             ..+|...+.++...|+|..|..+... +           ......+..++.
T Consensus      1234 Lge~q~AIEaarKA~n-------------~~aWkev~~acve~~Ef~LA~~cgl~-I-----------iv~~deLeeli~ 1288 (1630)
T 1xi4_A         1234 LGEYQAAVDGARKANS-------------TRTWKEVCFACVDGKEFRLAQMCGLH-I-----------VVHADELEELIN 1288 (1630)
T ss_pred             hCCHHHHHHHHHHhCC-------------HHHHHHHHHHHhhhhHHHHHHHHHHh-h-----------hcCHHHHHHHHH
Confidence            4444444444444311             12344444444444444444443332 1           112234457788


Q ss_pred             HHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC--CchhHHHHHHHHHHHHHHhccCCCCHHHHH
Q 016114          280 TLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG--EDDTKLLELLKRVLRIQEREFGSESEEVML  357 (395)
Q Consensus       280 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  357 (395)
                      .|...|.+++|+.+++.++.+-        +.....+..++.++.+..  +.. +++++|...+.+-+-+   ..-....
T Consensus      1289 yYe~~G~feEAI~LlE~aL~Le--------raH~gmftELaiLyaKy~peklm-Ehlk~f~~rini~k~~---r~~e~~~ 1356 (1630)
T 1xi4_A         1289 YYQDRGYFEELITMLEAALGLE--------RAHMGMFTELAILYSKFKPQKMR-EHLELFWSRVNIPKVL---RAAEQAH 1356 (1630)
T ss_pred             HHHHcCCHHHHHHHHHHHhccC--------hhHhHHHHHHHHHHHhCCHHHHH-HHHHHHHHhcccchHh---HHHHHHH
Confidence            8999999999999998887643        233344556777776643  222 3444444433221000   0114466


Q ss_pred             HHHHHHHHHHHhcchhhhchhhHH
Q 016114          358 TLKKVVSYLDKLGRKEEKFPLKKR  381 (395)
Q Consensus       358 ~~~~la~~~~~~g~~~~A~~~~~~  381 (395)
                      .|..+..+|.+-|+++.|....-.
T Consensus      1357 lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A         1357 LWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHh
Confidence            788899999999999999844433

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.65  E-value=5.6e-15  Score=104.08  Aligned_cols=102  Identities=14%  Similarity=0.056  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114           55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  134 (395)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  134 (395)
                      +|..+..+..+|..++..|+|++|+..|++++++        .|....++.++|.++..+|++++|+..+++++++    
T Consensus         9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----   76 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL----   76 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence            5788999999999999999999999999999987        5677889999999999999999999999999987    


Q ss_pred             hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       135 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                          +|....++.++|.++..+|++++|+..|++++++
T Consensus        77 ----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           77 ----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                4555678999999999999999999999999996

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.65  E-value=2.9e-14  Score=110.66  Aligned_cols=177  Identities=16%  Similarity=0.152  Sum_probs=142.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 016114           76 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  155 (395)
Q Consensus        76 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  155 (395)
                      .+|+.+|+++.+.          ..+.+++.+|.+|...+++++|+.+|+++.+.       ++   ..++.++|.+|..
T Consensus         3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------g~---~~a~~~lg~~y~~   62 (212)
T 3rjv_A            3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-------GD---GDALALLAQLKIR   62 (212)
T ss_dssp             -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHTTS
T ss_pred             chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CC---HHHHHHHHHHHHc
Confidence            3577778777653          34678999999999999999999999999763       23   4678999999998


Q ss_pred             CC----CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChh
Q 016114          156 NG----NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPS  227 (395)
Q Consensus       156 ~g----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~  227 (395)
                       +    ++++|+.+|+++.+.         .+   ..++.++|.+|..    .+++++|+.+|+++.+.-      ....
T Consensus        63 -~g~~~~~~~A~~~~~~A~~~---------g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~  123 (212)
T 3rjv_A           63 -NPQQADYPQARQLAEKAVEA---------GS---KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDA  123 (212)
T ss_dssp             -STTSCCHHHHHHHHHHHHHT---------TC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHH
T ss_pred             -CCCCCCHHHHHHHHHHHHHC---------CC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcc
Confidence             7    999999999999652         22   3466899999988    889999999999987631      1114


Q ss_pred             HHHHHHHHHHHHHh----hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhc-C-----ChHHHHHHHHHH
Q 016114          228 FVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-N-----RDKEAEKLVLEA  297 (395)
Q Consensus       228 ~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~a  297 (395)
                      ...++.+||.+|..    .+++++|+.+|+++.+.         +....++.+||.+|... |     ++++|+.+|+++
T Consensus       124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            57789999999999    88999999999999872         22344789999999864 3     899999999999


Q ss_pred             HHH
Q 016114          298 LYI  300 (395)
Q Consensus       298 l~~  300 (395)
                      .+.
T Consensus       195 ~~~  197 (212)
T 3rjv_A          195 CLE  197 (212)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            874

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.64  E-value=5.5e-15  Score=111.25  Aligned_cols=165  Identities=19%  Similarity=0.088  Sum_probs=131.4

Q ss_pred             hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016114          101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  180 (395)
Q Consensus       101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  180 (395)
                      ...+..+|..+...|++++|+..|++++..        +|....++..+|.++...|++++|+..+++++..       .
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-------~   70 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLE-------Y   70 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-------G
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-------c
Confidence            456778899999999999999999999987        3555678999999999999999999999998763       2


Q ss_pred             CCchHHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114          181 LDDSIMENMRIDLAEL-LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  259 (395)
Q Consensus       181 ~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  259 (395)
                      | .+..   ...++.+ +...++..+|+..++++++.        .|....++..+|.++...|++++|+..|++++.. 
T Consensus        71 p-~~~~---~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-  137 (176)
T 2r5s_A           71 Q-DNSY---KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV-  137 (176)
T ss_dssp             C-CHHH---HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred             C-ChHH---HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-
Confidence            3 3322   2223333 22334455689999999875        3555678899999999999999999999999872 


Q ss_pred             HHhhCCCCcc--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114          260 TKTVGPDDQS--ISFPMLHLGITLYHLNRDKEAEKLVLEALYI  300 (395)
Q Consensus       260 ~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  300 (395)
                             +|.  ...++..+|.++...|+.++|...|++++..
T Consensus       138 -------~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          138 -------NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             -------CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             -------CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence                   333  3457889999999999999999999998764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.64  E-value=1.1e-14  Score=115.01  Aligned_cols=208  Identities=12%  Similarity=-0.021  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHH-------HHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114           19 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM-------AKVLGSIGRAKKAVEIYHRVITILEL   91 (395)
Q Consensus        19 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~~~   91 (395)
                      .++..|.-+ ..+++..|...|.+++.+        +|....+|..+       +.++...++..+++..+++++.+...
T Consensus         9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~   79 (282)
T 4f3v_A            9 SLFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMS   79 (282)
T ss_dssp             HHHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGG
T ss_pred             HHHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence            345666666 589999999999999987        46677888888       88999999999999999988876333


Q ss_pred             hcCCCCh-------------hhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC
Q 016114           92 NRGTESA-------------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN  158 (395)
Q Consensus        92 ~~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  158 (395)
                      ..+....             ....+...++.++...|++++|.+.|...+.        ..|... ..+.+|.++...++
T Consensus        80 ~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a~l~~~~~r  150 (282)
T 4f3v_A           80 TLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKAVVYGAAER  150 (282)
T ss_dssp             GGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHHHHHHHTTC
T ss_pred             hhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHHHHHHHcCC
Confidence            2211100             0123444578899999999999999987764        245555 88999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChh-HHHHHHHHHH
Q 016114          159 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAA  237 (395)
Q Consensus       159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~  237 (395)
                      +++|+..++.+...        +++.....++.++|.++...|++++|+.+|++++.      ++..|. ...+.+++|.
T Consensus       151 ~~dA~~~l~~a~~~--------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~gl  216 (282)
T 4f3v_A          151 WTDVIDQVKSAGKW--------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAM  216 (282)
T ss_dssp             HHHHHHHHTTGGGC--------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcc--------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHH
Confidence            99999999865431        22323345789999999999999999999999873      222244 6678899999


Q ss_pred             HHHhhhcHHHHHHHHHHHHHH
Q 016114          238 SYSRSKNFVEAERLLRICLDI  258 (395)
Q Consensus       238 ~~~~~~~~~~A~~~~~~a~~~  258 (395)
                      ++..+|+.++|...|++++..
T Consensus       217 aL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          217 ARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhc
Confidence            999999999999999999883

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.63  E-value=1.9e-15  Score=113.80  Aligned_cols=167  Identities=18%  Similarity=0.087  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      ...+..+|..+...|++++|+..|+++++..        |....++..+|.++...|++++|+..+++++..        
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--------   69 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDEL--------QSRGDVKLAKADCLLETKQFELAQELLATIPLE--------   69 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--------
Confidence            4456789999999999999999999998863        455678999999999999999999999998764        


Q ss_pred             ChhhhhhHHhHHHHH-HHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114           97 SADLVLPLFSLGSLF-IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      .| .......++.+. ...+...+|+..++++++.        +|....++..+|.++...|++++|+..++++++.   
T Consensus        70 ~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---  137 (176)
T 2r5s_A           70 YQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV---  137 (176)
T ss_dssp             GC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---
T ss_pred             cC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---
Confidence            22 223333334332 2334445689999999876        4555678999999999999999999999999874   


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                          .|++.. ..++.+++.++...|+.++|+..|++++..
T Consensus       138 ----~p~~~~-~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          138 ----NLGAQD-GEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             ----CTTTTT-THHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             ----CcccCh-HHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence                222211 235678999999999999999999998764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.63  E-value=3.9e-16  Score=130.32  Aligned_cols=261  Identities=12%  Similarity=0.043  Sum_probs=110.6

Q ss_pred             HHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHH
Q 016114           26 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF  105 (395)
Q Consensus        26 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  105 (395)
                      .....|+.++|..++++.          ++|   .+|..+|..+...|++++|++.|.++-             ....+.
T Consensus        12 ll~~~~~ld~A~~fae~~----------~~~---~vWs~La~A~l~~g~~~eAIdsfika~-------------D~~~y~   65 (449)
T 1b89_A           12 LIEHIGNLDRAYEFAERC----------NEP---AVWSQLAKAQLQKGMVKEAIDSYIKAD-------------DPSSYM   65 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHccCHHHHHHHHHhC----------CCh---HHHHHHHHHHHHcCCHHHHHHHHHcCC-------------CHHHHH
Confidence            344677888998888876          122   378899999999999999999997641             123677


Q ss_pred             hHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchH
Q 016114          106 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  185 (395)
Q Consensus       106 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  185 (395)
                      .++..+...|++++|+.+++.+.+..        ++ ..+...++.+|.+.|+++++..+++.            |+.  
T Consensus        66 ~V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~------------pn~--  122 (449)
T 1b89_A           66 EVVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING------------PNN--  122 (449)
T ss_dssp             ----------------------------------------------------CHHHHTTTTTC------------C----
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC------------CcH--
Confidence            77888899999999999999887641        11 34567789999999999998877742            221  


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCC
Q 016114          186 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  265 (395)
Q Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  265 (395)
                        ..+..+|..+...|+|++|..+|.++                ..+..+|.++...|++++|++.++++.         
T Consensus       123 --~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~---------  175 (449)
T 1b89_A          123 --AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKAN---------  175 (449)
T ss_dssp             ----------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT---------
T ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcC---------
Confidence              26789999999999999999999865                247789999999999999999999871         


Q ss_pred             CCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 016114          266 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE  345 (395)
Q Consensus       266 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~  345 (395)
                          ...+|..+..++...|+++.|..+....         ..+|+.   +..+...|.+.|.++ +|+.++++++.+  
T Consensus       176 ----~~~~Wk~v~~aCv~~~ef~lA~~~~l~L---------~~~ad~---l~~lv~~Yek~G~~e-Eai~lLe~aL~l--  236 (449)
T 1b89_A          176 ----STRTWKEVCFACVDGKEFRLAQMCGLHI---------VVHADE---LEELINYYQDRGYFE-ELITMLEAALGL--  236 (449)
T ss_dssp             ----CHHHHHHHHHHHHHTTCHHHHHHTTTTT---------TTCHHH---HHHHHHHHHHTTCHH-HHHHHHHHHTTS--
T ss_pred             ----CchhHHHHHHHHHHcCcHHHHHHHHHHH---------HhCHhh---HHHHHHHHHHCCCHH-HHHHHHHHHhCC--
Confidence                2356778889999999999996655431         244554   335888899999999 999999999853  


Q ss_pred             hccCCCCHHHHHHHHHHHHHHHH--hcchhhhchhhHHHHHHHH
Q 016114          346 REFGSESEEVMLTLKKVVSYLDK--LGRKEEKFPLKKRLSNLRM  387 (395)
Q Consensus       346 ~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~  387 (395)
                         .+.|   ..++..||.+|.+  .++..++++.|...+.+.+
T Consensus       237 ---e~ah---~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k  274 (449)
T 1b89_A          237 ---ERAH---MGMFTELAILYSKFKPQKMREHLELFWSRVNIPK  274 (449)
T ss_dssp             ---TTCC---HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred             ---cHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence               2233   4555666666654  5777777777776666655

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.63  E-value=1.5e-14  Score=117.86  Aligned_cols=169  Identities=15%  Similarity=0.033  Sum_probs=143.5

Q ss_pred             hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114           98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  177 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  177 (395)
                      |.....+..+|..+...|++++|+..|++++..        +|....++..+|.++...|++++|+..+++++..     
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----  180 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----  180 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----
Confidence            455677889999999999999999999999987        4555678999999999999999999999998763     


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                        .++.   .......+..+...++.++|+..+++++..        +|....++.++|.++...|++++|+..|++++.
T Consensus       181 --~p~~---~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~  247 (287)
T 3qou_A          181 --DQDT---RYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLR  247 (287)
T ss_dssp             --GCSH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --hcch---HHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence              2322   233456677788889999999999999885        456677899999999999999999999999998


Q ss_pred             HHHHhhCCCCcch--HHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114          258 IMTKTVGPDDQSI--SFPMLHLGITLYHLNRDKEAEKLVLEALYI  300 (395)
Q Consensus       258 ~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~  300 (395)
                      .        +|..  ..++..++.++...|+.++|...|++++..
T Consensus       248 ~--------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          248 X--------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             H--------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             c--------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            4        3444  678899999999999999999999998864

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.63  E-value=2.6e-14  Score=110.88  Aligned_cols=177  Identities=14%  Similarity=0.036  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHH
Q 016114           34 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK  113 (395)
Q Consensus        34 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~  113 (395)
                      .+|+.+|+++.+.          ....+++.+|.++...+++++|+.+|+++.+.          ..+.+++.+|.+|..
T Consensus         3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~   62 (212)
T 3rjv_A            3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR   62 (212)
T ss_dssp             -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS
T ss_pred             chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc
Confidence            3577788887753          22457889999999999999999999999763          245788999999998


Q ss_pred             cC----ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcccCCCCchH
Q 016114          114 EG----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSI  185 (395)
Q Consensus       114 ~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  185 (395)
                       +    ++++|+.+|+++.+.       .   ...++.++|.+|..    .+++++|+.+|+++.+.       + +...
T Consensus        63 -~g~~~~~~~A~~~~~~A~~~-------g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-------~-~~~~  123 (212)
T 3rjv_A           63 -NPQQADYPQARQLAEKAVEA-------G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-------S-ESDA  123 (212)
T ss_dssp             -STTSCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-------T-TSHH
T ss_pred             -CCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-------C-CCcc
Confidence             7    899999999999642       2   34678999999988    89999999999999863       1 1113


Q ss_pred             HHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh-h-----cHHHHHHHHHHH
Q 016114          186 MENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-K-----NFVEAERLLRIC  255 (395)
Q Consensus       186 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~-----~~~~A~~~~~~a  255 (395)
                      ...++.+||.+|..    .+++++|+.+|+++.+.      +.+   ..++.+||.+|... |     ++++|+.+|+++
T Consensus       124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~---~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SRT---GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SCT---THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CCC---HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            35567899999999    88999999999999864      012   23688999999764 3     899999999999


Q ss_pred             HHH
Q 016114          256 LDI  258 (395)
Q Consensus       256 ~~~  258 (395)
                      .+.
T Consensus       195 ~~~  197 (212)
T 3rjv_A          195 CLE  197 (212)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            873

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.63  E-value=3.5e-16  Score=130.62  Aligned_cols=269  Identities=12%  Similarity=0.018  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   97 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   97 (395)
                      .+|..+|..+...|++++|++.|.++-.             ...+..++..+...|++++|+.+++.+.+..        
T Consensus        33 ~vWs~La~A~l~~g~~~eAIdsfika~D-------------~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~--------   91 (449)
T 1b89_A           33 AVWSQLAKAQLQKGMVKEAIDSYIKADD-------------PSSYMEVVQAANTSGNWEELVKYLQMARKKA--------   91 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCCC-------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------
Confidence            4788999999999999999999976411             2256677888889999999999998887631        


Q ss_pred             hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114           98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  177 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  177 (395)
                      ++ +.+...++.+|.+.|++.++.+++..             |.. .++..+|..+...|+|++|..+|.++        
T Consensus        92 ~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a--------  148 (449)
T 1b89_A           92 RE-SYVETELIFALAKTNRLAELEEFING-------------PNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------  148 (449)
T ss_dssp             ------------------CHHHHTTTTTC-------------C-----------------CTTTHHHHHHHT--------
T ss_pred             cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------CcH-HHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence            11 45567789999999999998877741             222 38999999999999999999999975        


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                                ..+..+|.++...|++++|++.++++.          +   ..+|...+.++...|+++.|..+....  
T Consensus       149 ----------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~---~~~Wk~v~~aCv~~~ef~lA~~~~l~L--  203 (449)
T 1b89_A          149 ----------SNFGRLASTLVHLGEYQAAVDGARKAN----------S---TRTWKEVCFACVDGKEFRLAQMCGLHI--  203 (449)
T ss_dssp             ----------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------C---HHHHHHHHHHHHHTTCHHHHHHTTTTT--
T ss_pred             ----------hhHHHHHHHHHHhccHHHHHHHHHHcC----------C---chhHHHHHHHHHHcCcHHHHHHHHHHH--
Confidence                      134779999999999999999999871          1   356778889999999999996655431  


Q ss_pred             HHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHH
Q 016114          258 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  337 (395)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  337 (395)
                             ..+|+.   ...+..+|...|++++|+.++++++.+.     +.|   ...+..||.++.+-. ++ +-.+  
T Consensus       204 -------~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le-----~ah---~~~ftel~il~~ky~-p~-k~~e--  261 (449)
T 1b89_A          204 -------VVHADE---LEELINYYQDRGYFEELITMLEAALGLE-----RAH---MGMFTELAILYSKFK-PQ-KMRE--  261 (449)
T ss_dssp             -------TTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTST-----TCC---HHHHHHHHHHHHTTC-HH-HHHH--
T ss_pred             -------HhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCc-----HHH---HHHHHHHHHHHHhcC-HH-HHHH--
Confidence                   124433   3468889999999999999999998642     233   345667788877653 33 3222  


Q ss_pred             HHHHHHHHhccCCCCH------HHHHHHHHHHHHHHHhcchhhhchhhHH
Q 016114          338 KRVLRIQEREFGSESE------EVMLTLKKVVSYLDKLGRKEEKFPLKKR  381 (395)
Q Consensus       338 ~~al~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~  381 (395)
                        .++.+.+..  +-|      .....|..+..+|...++++.|....-+
T Consensus       262 --hl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~  307 (449)
T 1b89_A          262 --HLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN  307 (449)
T ss_dssp             --HHHHHSTTS--CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --HHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence              333333221  122      2345677889999999999988765443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.62  E-value=4.4e-14  Score=99.72  Aligned_cols=108  Identities=13%  Similarity=0.101  Sum_probs=96.1

Q ss_pred             hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114           98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  177 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  177 (395)
                      ++.+.++.++|..++..|++++|+.+|++++++        +|....++.++|.+|..+|++++|+..+++++++.... 
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence            456678889999999999999999999999987        45556789999999999999999999999999987753 


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                        .......+.++.++|.++...|++++|+.+|++++..
T Consensus        76 --~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           76 --RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             --TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence              4455667788999999999999999999999999875

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.62  E-value=4.7e-15  Score=107.44  Aligned_cols=102  Identities=9%  Similarity=0.069  Sum_probs=93.7

Q ss_pred             hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114           55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  134 (395)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  134 (395)
                      +|....+++.+|.++...|++++|+..|++++.+        +|....++.++|.++...|++++|+..|++++.+    
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l----   99 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL----   99 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence            5778889999999999999999999999999987        6777889999999999999999999999999988    


Q ss_pred             hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       135 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                          +|....++.++|.++...|++++|+..|++++++
T Consensus       100 ----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          100 ----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             ----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                3444467999999999999999999999999996

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.61  E-value=1.6e-14  Score=117.66  Aligned_cols=171  Identities=15%  Similarity=0.108  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      |.....+..+|..+...|++++|+..|++++...        |....++..+|.++...|++++|+..+++++..     
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----  180 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----  180 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----
Confidence            3445667899999999999999999999999862        334567899999999999999999999998764     


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                         .|.........+..+...++.++|+..+++++..        +|....++.++|.++...|++++|+..+++++...
T Consensus       181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~  249 (287)
T 3qou_A          181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD  249 (287)
T ss_dssp             ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence               3344455666777788899999999999999987        56666789999999999999999999999999862


Q ss_pred             HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                             |+.. -..++.+++.++...|+.++|...|++++..
T Consensus       250 -------p~~~-~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          250 -------LTAA-DGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             -------TTGG-GGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             -------cccc-cchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence                   2221 1345688999999999999999999998764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.61  E-value=3.4e-14  Score=102.90  Aligned_cols=109  Identities=10%  Similarity=0.193  Sum_probs=98.0

Q ss_pred             hhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Q 016114            6 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV   85 (395)
Q Consensus         6 ~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   85 (395)
                      ++.....+|....+++.+|..+...|++++|+..|++++.+        +|....++..+|.++...|++++|+..|+++
T Consensus        25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVA   96 (151)
T ss_dssp             TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            34455668999999999999999999999999999999987        2444668899999999999999999999999


Q ss_pred             HHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           86 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      +.+        .|..+.+++++|.++..+|++++|+..|++++.+
T Consensus        97 l~l--------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A           97 FAL--------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHH--------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             Hhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            998        5667789999999999999999999999999987

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.60  E-value=6.9e-13  Score=107.39  Aligned_cols=238  Identities=10%  Similarity=-0.009  Sum_probs=185.6

Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC--chhHHHHHHHHHHHHHHHh
Q 016114           15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG--RAKKAVEIYHRVITILELN   92 (395)
Q Consensus        15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~   92 (395)
                      ....+...+-.........++|+..+.+++.+        .|....+++..+.++...|  ++++++..+.+++..    
T Consensus        31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~----   98 (306)
T 3dra_A           31 DYKQIMGLLLALMKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD----   98 (306)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----
Confidence            34444433333333444447899999999987        3555678889999999999  999999999999986    


Q ss_pred             cCCCChhhhhhHHhHHHHH----HHc---CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHH--HHH
Q 016114           93 RGTESADLVLPLFSLGSLF----IKE---GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE--EAV  163 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~  163 (395)
                          +|....+++..+.++    ...   +++++++.++.++++.        +|....++...+.+....|.++  +++
T Consensus        99 ----nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL  166 (306)
T 3dra_A           99 ----NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKEL  166 (306)
T ss_dssp             ----CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             ----CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHH
Confidence                677778888888888    666   7899999999999986        5666788999999999999998  999


Q ss_pred             HHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHH
Q 016114          164 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR------GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  237 (395)
Q Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  237 (395)
                      .+++++++..       +.+   ..++...+.+....|+      ++++++++.+++..        +|....+++.++.
T Consensus       167 ~~~~~~i~~d-------~~N---~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~  228 (306)
T 3dra_A          167 SFVDKVIDTD-------LKN---NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLG  228 (306)
T ss_dssp             HHHHHHHHHC-------TTC---HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHH
T ss_pred             HHHHHHHHhC-------CCC---HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHH
Confidence            9999999852       222   4567888888888887      88999999998875        4566678889999


Q ss_pred             HHHhhhcHHH-HHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114          238 SYSRSKNFVE-AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  299 (395)
Q Consensus       238 ~~~~~~~~~~-A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  299 (395)
                      ++...|+..+ ...++.+++.+     +...+....++..++.++...|+.++|+++|+.+.+
T Consensus       229 ll~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          229 IHERFDRSITQLEEFSLQFVDL-----EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHHTTCCGGGGHHHHHTTEEG-----GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCCChHHHHHHHHHHHhc-----cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            9999888544 33454444431     112356677899999999999999999999998765

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.60  E-value=5.1e-14  Score=99.39  Aligned_cols=108  Identities=11%  Similarity=0.103  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114           56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  135 (395)
Q Consensus        56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  135 (395)
                      ++.+.++..+|..++..|+|++|+.+|++++++        .|..+.++.++|.+|..+|++++|+..+++++++.+.. 
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence            466778899999999999999999999999987        56778899999999999999999999999999987654 


Q ss_pred             CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       136 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      ....+..+.++.++|.++...|++++|+.+|++++..
T Consensus        76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            2334557789999999999999999999999999874

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.60  E-value=9.7e-14  Score=109.61  Aligned_cols=209  Identities=12%  Similarity=0.019  Sum_probs=163.7

Q ss_pred             HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhH-------HHHHHHcCChHHHHHHHHHHHHHHH
Q 016114           60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL-------GSLFIKEGKAVDAESVFSRILKIYT  132 (395)
Q Consensus        60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~al~~~~  132 (395)
                      ..++..|.-+ ..+++..|...|.+++.+        +|..+.++..+       +.++...++..+++..+++.+.+..
T Consensus         8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p   78 (282)
T 4f3v_A            8 ASLFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISM   78 (282)
T ss_dssp             HHHHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCG
T ss_pred             HHHHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence            3455556555 589999999999999997        78889999999       8999999999999999999887644


Q ss_pred             HHhCCCCh-------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHH
Q 016114          133 KVYGENDG-------------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI  199 (395)
Q Consensus       133 ~~~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  199 (395)
                      ..++....             ........++.++...|++++|.+.|...+.       .  .+.. . ..+.+|.++..
T Consensus        79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-------~--~p~~-~-~~~~~a~l~~~  147 (282)
T 4f3v_A           79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-------A--GSEH-L-VAWMKAVVYGA  147 (282)
T ss_dssp             GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-------T--TCHH-H-HHHHHHHHHHH
T ss_pred             hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------c--CCch-H-HHHHHHHHHHH
Confidence            33221111             1234566788999999999999999987654       1  2222 2 66889999999


Q ss_pred             cCChHHHHHHHHHHHHHHHhhhCCCChh-HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc-hHHHHHHH
Q 016114          200 VGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-ISFPMLHL  277 (395)
Q Consensus       200 ~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l  277 (395)
                      .+++++|+..++.+...       .++. ...+++++|.++...|++++|+.+|+++..      ++..|. ...+.+.+
T Consensus       148 ~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~  214 (282)
T 4f3v_A          148 AERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYL  214 (282)
T ss_dssp             TTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHH
Confidence            99999999999865432       2333 245789999999999999999999999874      222254 66788999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHH
Q 016114          278 GITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       278 a~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      |.++..+|+.++|...|++++...
T Consensus       215 glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          215 AMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC
Confidence            999999999999999999998854

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.60  E-value=9.9e-13  Score=106.47  Aligned_cols=223  Identities=10%  Similarity=-0.060  Sum_probs=180.2

Q ss_pred             hCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcC--ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 016114           72 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG--KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  149 (395)
Q Consensus        72 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  149 (395)
                      ....++|+..+.+++.+        .|....+++..+.++...|  ++++++.++.+++..        +|....+++..
T Consensus        46 ~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R  109 (306)
T 3dra_A           46 EEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYR  109 (306)
T ss_dssp             TCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHH
Confidence            34446899999999987        6888899999999999999  999999999999986        45555678888


Q ss_pred             HHHH----HHC---CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHHhh
Q 016114          150 AHAK----CAN---GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ--EGRELLEECLLITEKY  220 (395)
Q Consensus       150 a~~~----~~~---g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~  220 (395)
                      +.++    ...   +++++++.++.++++...       .+   ..++...+.+....|+++  ++++++.++++.    
T Consensus       110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-------kn---y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~----  175 (306)
T 3dra_A          110 QLIIGQIMELNNNDFDPYREFDILEAMLSSDP-------KN---HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT----  175 (306)
T ss_dssp             HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-------TC---HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-------CC---HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh----
Confidence            8887    666   899999999999998532       22   456788899999999998  999999999875    


Q ss_pred             hCCCChhHHHHHHHHHHHHHhhhc------HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHH-HHHH
Q 016114          221 KGKEHPSFVTHLLNLAASYSRSKN------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-AEKL  293 (395)
Q Consensus       221 ~~~~~~~~~~~~~~la~~~~~~~~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~  293 (395)
                          ++....++...+.+....++      ++++++++.+++..        +|....++..++.++...|+..+ ...+
T Consensus       176 ----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~  243 (306)
T 3dra_A          176 ----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEF  243 (306)
T ss_dssp             ----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHH
T ss_pred             ----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHH
Confidence                45666788899999988887      89999999999883        67788899999999999998655 4445


Q ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 016114          294 VLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  342 (395)
Q Consensus       294 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~  342 (395)
                      +.+++...     ...+....++..++.++.+.|+.+ +|+++|+.+.+
T Consensus       244 ~~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~-~A~~~~~~l~~  286 (306)
T 3dra_A          244 SLQFVDLE-----KDQVTSSFALETLAKIYTQQKKYN-ESRTVYDLLKS  286 (306)
T ss_dssp             HHTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH
T ss_pred             HHHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHh
Confidence            55555421     112334457889999999999998 99999998764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.58  E-value=2.1e-14  Score=129.08  Aligned_cols=153  Identities=12%  Similarity=0.089  Sum_probs=117.9

Q ss_pred             hCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 016114           72 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  151 (395)
Q Consensus        72 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  151 (395)
                      .|++++|+..++++++.        .|....++..+|.++...|++++|+..++++++.        .|....++.++|.
T Consensus         2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~   65 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR   65 (568)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            47899999999999876        4666788999999999999999999999999975        4555678999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHH
Q 016114          152 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  231 (395)
Q Consensus       152 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  231 (395)
                      ++...|++++|+.+++++++..       ++.   ..++.++|.++...|++++|+..++++++.        .|....+
T Consensus        66 ~~~~~g~~~~A~~~~~~al~~~-------p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~  127 (568)
T 2vsy_A           66 VRWTQQRHAEAAVLLQQASDAA-------PEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYI  127 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhcC-------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence            9999999999999999999862       232   456789999999999999999999999986        2444567


Q ss_pred             HHHHHHHHHhh---hcHHHHHHHHHHHHHH
Q 016114          232 LLNLAASYSRS---KNFVEAERLLRICLDI  258 (395)
Q Consensus       232 ~~~la~~~~~~---~~~~~A~~~~~~a~~~  258 (395)
                      +.++|.++...   |++++|...++++++.
T Consensus       128 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          128 TAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            88999999999   9999999999999884

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.58  E-value=3.5e-14  Score=127.65  Aligned_cols=154  Identities=12%  Similarity=0.077  Sum_probs=118.5

Q ss_pred             hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHH
Q 016114           30 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  109 (395)
Q Consensus        30 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  109 (395)
                      .|++++|+..++++++..        |....++..+|.++...|++++|+..++++++.        .|....++..+|.
T Consensus         2 ~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~   65 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR--------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR   65 (568)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            478999999999998763        334567899999999999999999999999985        5667789999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHH
Q 016114          110 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  189 (395)
Q Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  189 (395)
                      ++...|++++|+.+++++++.        +|....++.++|.++...|++++|+..++++++..       ++.   ..+
T Consensus        66 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~---~~~  127 (568)
T 2vsy_A           66 VRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-------PEE---PYI  127 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC---HHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCC---HHH
Confidence            999999999999999999987        34456789999999999999999999999999863       232   356


Q ss_pred             HHHHHHHHHHc---CChHHHHHHHHHHHHHH
Q 016114          190 RIDLAELLHIV---GRGQEGRELLEECLLIT  217 (395)
Q Consensus       190 ~~~la~~~~~~---g~~~~A~~~~~~al~~~  217 (395)
                      +.++|.++...   |++++|...++++++..
T Consensus       128 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A          128 TAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            68899999999   99999999999998863

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.55  E-value=3.7e-14  Score=118.21  Aligned_cols=164  Identities=16%  Similarity=0.097  Sum_probs=131.2

Q ss_pred             hhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC-------CChhHH
Q 016114           71 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE-------NDGRVG  143 (395)
Q Consensus        71 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~  143 (395)
                      ..+++++|+..+++++..        .|..+.++..+|.++...|++++|+..|++++.+.......       ..+...
T Consensus       125 ~L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~  196 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL  196 (336)
T ss_dssp             EEEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHH
Confidence            456778888888777665        46678899999999999999999999999999884221000       011236


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114          144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  223 (395)
Q Consensus       144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  223 (395)
                      .++.++|.++...|++++|+..+++++++.       |+.   ..++.++|.++...|++++|+..|++++++       
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-------p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------  259 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-------SNN---EKGLSRRGEAHLAVNDFELARADFQKVLQL-------  259 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------
Confidence            789999999999999999999999999963       222   456799999999999999999999999986       


Q ss_pred             CChhHHHHHHHHHHHHHhhhcHHHH-HHHHHHHHHHHH
Q 016114          224 EHPSFVTHLLNLAASYSRSKNFVEA-ERLLRICLDIMT  260 (395)
Q Consensus       224 ~~~~~~~~~~~la~~~~~~~~~~~A-~~~~~~a~~~~~  260 (395)
                       .|....++..++.++...|++++| ...|++++....
T Consensus       260 -~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  296 (336)
T 1p5q_A          260 -YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA  296 (336)
T ss_dssp             -CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             244456889999999999999999 456777665443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.55  E-value=4.1e-13  Score=96.06  Aligned_cols=131  Identities=21%  Similarity=0.415  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   97 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   97 (395)
                      .+++.+|.++...|++++|+.++++++...     +   ....++..+|.++...|++++|...+++++..        .
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~   65 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-----P---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D   65 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-----C---cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence            457889999999999999999999998752     2   23456788999999999999999999999876        3


Q ss_pred             hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114           98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      |....++..+|.++...|++++|..++++++..        .|....++..+|.++...|++++|..++++++..
T Consensus        66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            445677889999999999999999999999876        2333467888999999999999999999999875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.53  E-value=2.6e-13  Score=113.06  Aligned_cols=147  Identities=17%  Similarity=0.213  Sum_probs=123.9

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC-------cChHHHHHHHHHHHHHHHhhCchhHHHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG-------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR   84 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   84 (395)
                      ..|..+.++..+|.+++..|++++|+..|++++.+.+....       ...+....++.++|.++...|++++|+..|++
T Consensus       142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  221 (336)
T 1p5q_A          142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK  221 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            36778899999999999999999999999999998543210       01234468899999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHH-H
Q 016114           85 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA-V  163 (395)
Q Consensus        85 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~  163 (395)
                      ++.+        .|....+++.+|.++...|++++|+..|++++++        .|....++..++.++...|++++| .
T Consensus       222 al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~  285 (336)
T 1p5q_A          222 ALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAREK  285 (336)
T ss_dssp             HHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9997        5667889999999999999999999999999987        344456889999999999999999 4


Q ss_pred             HHHHHHHHHHH
Q 016114          164 ELYKKALRVIK  174 (395)
Q Consensus       164 ~~~~~a~~~~~  174 (395)
                      ..|++++....
T Consensus       286 ~~~~~~~~~~~  296 (336)
T 1p5q_A          286 KLYANMFERLA  296 (336)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            57777766543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.53  E-value=1.1e-12  Score=93.82  Aligned_cols=131  Identities=21%  Similarity=0.344  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114           60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  139 (395)
Q Consensus        60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  139 (395)
                      .++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|..++++++..        .
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~   65 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D   65 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence            35778899999999999999999999875        3445678889999999999999999999999876        2


Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                      |....++..+|.++...|++++|+..+++++...       +..   ..++..+|.++...|++++|..++++++..
T Consensus        66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCC---hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            3334678899999999999999999999998852       222   345678999999999999999999998875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.53  E-value=6.7e-13  Score=96.35  Aligned_cols=110  Identities=15%  Similarity=0.129  Sum_probs=97.0

Q ss_pred             hhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Q 016114            6 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV   85 (395)
Q Consensus         6 ~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   85 (395)
                      ++.....+|.....++.+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..|+++
T Consensus        10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   81 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYG   81 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            44455667889999999999999999999999999999986        2334567889999999999999999999999


Q ss_pred             HHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114           86 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  131 (395)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  131 (395)
                      +.+        .|....+++.+|.++...|++++|+..|++++++.
T Consensus        82 l~l--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           82 AVM--------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             Hhc--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            987        46667889999999999999999999999999884

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.52  E-value=3.3e-13  Score=97.99  Aligned_cols=103  Identities=17%  Similarity=-0.001  Sum_probs=92.7

Q ss_pred             hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114           55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  134 (395)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  134 (395)
                      +|....+++.+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++.+    
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----   84 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM----   84 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            4677888999999999999999999999999987        5667788999999999999999999999999987    


Q ss_pred             hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114          135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus       135 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                          .|....++.++|.++...|++++|+..|++++++.
T Consensus        85 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           85 ----DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             ----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence                34444678999999999999999999999999975

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.52  E-value=2.3e-12  Score=95.86  Aligned_cols=139  Identities=12%  Similarity=0.039  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114           57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  136 (395)
                      ..+..+..+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+.++.+++..      
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------   76 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------   76 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence            55678899999999999999999999999986        4556788999999999999999999999999987      


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                        .|....++..+|.++...|++++|+.+++++++..       +..+. ......++..+...|++++|+..+.++..+
T Consensus        77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-------PHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence              34445688999999999999999999999999863       33332 223355666688899999999999998877


Q ss_pred             HHh
Q 016114          217 TEK  219 (395)
Q Consensus       217 ~~~  219 (395)
                      ...
T Consensus       147 ~~~  149 (166)
T 1a17_A          147 VDS  149 (166)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.3e-12  Score=92.29  Aligned_cols=123  Identities=12%  Similarity=0.033  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      |..+..+..+|..++..|++++|+..|++++.+.        |....++..+|.++...|++++|+..+++++.+     
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----   67 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----   67 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence            4567788999999999999999999999999872        334578999999999999999999999999987     


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC  154 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  154 (395)
                         .|....++..+|.++...|++++|+..+++++.+.....  +.|....+...++.+..
T Consensus        68 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           68 ---DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHH
Confidence               466678999999999999999999999999999865432  23555556666665543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.52  E-value=9e-13  Score=98.05  Aligned_cols=140  Identities=12%  Similarity=0.050  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      ...+..+..+|..+...|++++|+..|++++...        |....++..+|.++...|++++|+..+++++..     
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----   76 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----   76 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            3567788999999999999999999999999862        233567889999999999999999999999987     


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                         .|....++..+|.++...|++++|..++++++..     .++++. ......++..+...|++++|+..+.++..+.
T Consensus        77 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A           77 ---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence               4556788999999999999999999999999987     223332 2233556666888999999999999998877


Q ss_pred             Hh
Q 016114          174 KD  175 (395)
Q Consensus       174 ~~  175 (395)
                      ..
T Consensus       148 ~~  149 (166)
T 1a17_A          148 DS  149 (166)
T ss_dssp             HH
T ss_pred             cc
Confidence            65

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.50  E-value=1.9e-12  Score=91.40  Aligned_cols=103  Identities=15%  Similarity=-0.010  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114           57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  136 (395)
                      ..+..+..+|..+...|++++|+..|++++.+        .|....++.++|.++...|++++|+..+++++.+      
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------   67 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------   67 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            34567889999999999999999999999987        4666789999999999999999999999999987      


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114          137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus       137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                        +|....++..+|.++...|++++|+..+++++++...
T Consensus        68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  104 (126)
T 3upv_A           68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE  104 (126)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcc
Confidence              3555678999999999999999999999999998643

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.49  E-value=4.2e-13  Score=104.45  Aligned_cols=138  Identities=12%  Similarity=0.077  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   95 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   95 (395)
                      .+..++.+|..+...|++++|+..|++++.       +    ...++..+|.++...|++++|+..|++++.+       
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------   66 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR-------   66 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            445578999999999999999999998841       1    2357899999999999999999999999987       


Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY--------GENDGRVGMAMCSLAHAKCANGNAEEAVELYK  167 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  167 (395)
                       .|....++..+|.++...|++++|+..|++++.......        ....|....++.++|.++...|++++|+..++
T Consensus        67 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  145 (213)
T 1hh8_A           67 -DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA  145 (213)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence             456678899999999999999999999999998642210        00234566889999999999999999999999


Q ss_pred             HHHHH
Q 016114          168 KALRV  172 (395)
Q Consensus       168 ~a~~~  172 (395)
                      +++++
T Consensus       146 ~al~~  150 (213)
T 1hh8_A          146 LATSM  150 (213)
T ss_dssp             HHHTT
T ss_pred             HHHHc
Confidence            99885

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.48  E-value=2.5e-12  Score=91.80  Aligned_cols=118  Identities=18%  Similarity=0.084  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC----CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114           58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT----ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  133 (395)
Q Consensus        58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  133 (395)
                      .+..+...|..++..|+|++|+..|++++++.......    ..|....++.++|.++..+|++++|+..++++++++.+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            45667889999999999999999999999985331100    01223459999999999999999999999999998766


Q ss_pred             HhCCCChhHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114          134 VYGENDGRVGMAM----CSLAHAKCANGNAEEAVELYKKALRVIKDS  176 (395)
Q Consensus       134 ~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  176 (395)
                      . ++-+|+...++    +++|.++..+|++++|+..|++++++....
T Consensus        90 ~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           90 R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             c-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            5 34567788888    999999999999999999999999997653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.48  E-value=3.1e-12  Score=91.35  Aligned_cols=117  Identities=10%  Similarity=0.106  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC----cChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG----KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   91 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   91 (395)
                      .+..+...|..++..|+|++|+..|++++++.+....    ...|....++.++|.++..+|++++|+..+.++++++.+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4566789999999999999999999999998754111    112345669999999999999999999999999998665


Q ss_pred             hcCCCChhhhhhH----HhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114           92 NRGTESADLVLPL----FSLGSLFIKEGKAVDAESVFSRILKIYTK  133 (395)
Q Consensus        92 ~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~~~  133 (395)
                      .. +-.|+...++    +++|.++..+|++++|+..|++++++...
T Consensus        90 ~~-e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           90 RG-ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             HC-CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cc-cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            53 4467788888    99999999999999999999999999654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.48  E-value=9.3e-13  Score=102.45  Aligned_cols=139  Identities=14%  Similarity=0.115  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114           59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      ...++.+|..+...|++++|+..|++++.          + ...++..+|.++...|++++|+..+++++.+        
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------   66 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQD----------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------   66 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSSS----------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHcC----------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            34577889999999999999999998741          1 3568999999999999999999999999987        


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc------CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114          139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY------MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  212 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  212 (395)
                      .|....++.++|.++...|++++|+..++++++.......      .....+....++.++|.++...|++++|+..+++
T Consensus        67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  146 (213)
T 1hh8_A           67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  146 (213)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3455678999999999999999999999999986432100      0002234457789999999999999999999999


Q ss_pred             HHHH
Q 016114          213 CLLI  216 (395)
Q Consensus       213 al~~  216 (395)
                      ++.+
T Consensus       147 al~~  150 (213)
T 1hh8_A          147 ATSM  150 (213)
T ss_dssp             HHTT
T ss_pred             HHHc
Confidence            9875

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.46  E-value=3e-12  Score=92.40  Aligned_cols=111  Identities=14%  Similarity=0.115  Sum_probs=96.4

Q ss_pred             hhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Q 016114            6 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV   85 (395)
Q Consensus         6 ~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   85 (395)
                      ++.....+|.....++.+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..|+++
T Consensus         7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   78 (142)
T 2xcb_A            7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYG   78 (142)
T ss_dssp             --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34455667888999999999999999999999999999986        2334567889999999999999999999999


Q ss_pred             HHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114           86 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  132 (395)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  132 (395)
                      +.+        .|....++..+|.++...|++++|+..|++++.+..
T Consensus        79 l~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           79 ALM--------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             HHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             Hhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            987        456677899999999999999999999999998853

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.46  E-value=2.3e-12  Score=95.41  Aligned_cols=110  Identities=16%  Similarity=0.122  Sum_probs=96.3

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC---cC-------hHHHHHHHHHHHHHHHhhCchhHHHHHH
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---KT-------SILLVTSLLGMAKVLGSIGRAKKAVEIY   82 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~   82 (395)
                      ....+..+...|..++..|+|++|+..|.+++.+......   +.       .|....++.++|.++...|++++|+..+
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3456788899999999999999999999999998654321   11       4566788999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           83 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        83 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      ++++.+        .|....+++.+|.++...|++++|+..|++++.+
T Consensus        87 ~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           87 SEVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            999997        5777889999999999999999999999999988

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.45  E-value=3.7e-13  Score=103.38  Aligned_cols=159  Identities=13%  Similarity=0.023  Sum_probs=114.9

Q ss_pred             HhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCc-
Q 016114          105 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD-  183 (395)
Q Consensus       105 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-  183 (395)
                      ...+......|+++++.+.+......        .+..+..+..+|..+...|++++|+..|++++.+....    ++. 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~   75 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT----EEWD   75 (198)
T ss_dssp             --------------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC----TTCC
T ss_pred             cchhhhhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----cccc
Confidence            34455666778888887777655432        34566788999999999999999999999999864321    110 


Q ss_pred             ---------hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016114          184 ---------SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  254 (395)
Q Consensus       184 ---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  254 (395)
                               .....++.++|.++...|++++|+.++++++.+        .|....++..+|.++...|++++|+..|++
T Consensus        76 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  147 (198)
T 2fbn_A           76 DQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYK  147 (198)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence                     112367889999999999999999999999986        244567889999999999999999999999


Q ss_pred             HHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHH
Q 016114          255 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  291 (395)
Q Consensus       255 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  291 (395)
                      ++.+        .|....++..++.++...++..++.
T Consensus       148 al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          148 AASL--------NPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHH--------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9984        4556678889999999888877776

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.45  E-value=2.7e-13  Score=110.04  Aligned_cols=194  Identities=11%  Similarity=-0.006  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114           59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      +..+..+|..+...|++++|+..|++++..        .|....++.++|.++...|++++|+..+++++.+        
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            456788999999999999999999999987        4666788999999999999999999999999875        


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114          139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  218 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  218 (395)
                      +|....++.++|.++...|++++|+..|++++++.....  ..-.... .    .....      .++..+....     
T Consensus        68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~~-~----~~~~~------~~~~~~~~~~-----  129 (281)
T 2c2l_A           68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR--LNFGDDI-P----SALRI------AKKKRWNSIE-----  129 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CCCCSHH-H----HHHHH------HHHHHHHHHH-----
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch--hhHHHHH-H----HHHHH------HHHHHHHHHH-----
Confidence            455567899999999999999999999999999876420  0001111 1    11111      1111111111     


Q ss_pred             hhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhc-CChHHHHHHHHHH
Q 016114          219 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEA  297 (395)
Q Consensus       219 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a  297 (395)
                      ....+..+..   ...++.+.  .|++++|++.++++++.        .|........++.++... +.+++|...|.++
T Consensus       130 ~~~~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a  196 (281)
T 2c2l_A          130 ERRIHQESEL---HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQV  196 (281)
T ss_dssp             HTCCCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1111233333   23344443  69999999999888762        344455556666666665 6788888888877


Q ss_pred             HH
Q 016114          298 LY  299 (395)
Q Consensus       298 l~  299 (395)
                      .+
T Consensus       197 ~~  198 (281)
T 2c2l_A          197 DE  198 (281)
T ss_dssp             SC
T ss_pred             hc
Confidence            65

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.45  E-value=2.3e-12  Score=91.51  Aligned_cols=125  Identities=18%  Similarity=0.189  Sum_probs=106.3

Q ss_pred             CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114           11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   90 (395)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   90 (395)
                      ...|..+..+..+|..+...|++++|+..+++++...        |....++..+|.++...|++++|+..+.+++..  
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--   75 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--   75 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--
Confidence            4578888999999999999999999999999999862        223567889999999999999999999999986  


Q ss_pred             HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCH
Q 016114           91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  159 (395)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  159 (395)
                            .|....++..+|.++...|++++|..++++++..        .|....++..++.++...|++
T Consensus        76 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           76 ------DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred             ------CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence                  3455778999999999999999999999999987        233346778899998887764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.45  E-value=1.4e-12  Score=93.04  Aligned_cols=125  Identities=14%  Similarity=0.085  Sum_probs=106.2

Q ss_pred             CCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Q 016114           10 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL   89 (395)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   89 (395)
                      ....|.....+..+|..+...|++++|+..+++++...        |....++..+|.++...|++++|+..+++++.. 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-   79 (133)
T 2lni_A            9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-   79 (133)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-
T ss_pred             CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-
Confidence            45567788889999999999999999999999998752        233567899999999999999999999999986 


Q ss_pred             HHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC
Q 016114           90 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN  158 (395)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  158 (395)
                             .|....++..+|.++...|++++|+.++++++..        .|....++..++.++...|+
T Consensus        80 -------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 -------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred             -------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence                   4556778999999999999999999999999986        34445677888888877654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.44  E-value=1e-11  Score=89.56  Aligned_cols=104  Identities=14%  Similarity=0.019  Sum_probs=93.1

Q ss_pred             hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114           55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  134 (395)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  134 (395)
                      +|.....++.+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++.+    
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----   81 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM----   81 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            4677788999999999999999999999999986        5667788999999999999999999999999987    


Q ss_pred             hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114          135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  174 (395)
Q Consensus       135 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  174 (395)
                          .|....++.++|.++...|++++|+..|++++++..
T Consensus        82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence                344446789999999999999999999999999864

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.44  E-value=2.9e-13  Score=103.96  Aligned_cols=168  Identities=11%  Similarity=-0.055  Sum_probs=113.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc-
Q 016114          191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-  269 (395)
Q Consensus       191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-  269 (395)
                      ...+......|+++++.+.+......        .+..+..+..+|..+...|++++|+..|++++.+....  ++... 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~   77 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQ   77 (198)
T ss_dssp             --------------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCH
T ss_pred             cchhhhhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchh
Confidence            33455666678888887777654432        24456778899999999999999999999999843211  10001 


Q ss_pred             ---------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 016114          270 ---------ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV  340 (395)
Q Consensus       270 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a  340 (395)
                               ...++.++|.++...|++++|+.++++++.+.        |....++..+|.++...|+++ +|+..|+++
T Consensus        78 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~-~A~~~~~~a  148 (198)
T 2fbn_A           78 ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--------KNNVKALYKLGVANMYFGFLE-EAKENLYKA  148 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHTCHH-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcccHH-HHHHHHHHH
Confidence                     13788999999999999999999999999863        334567899999999999999 999999999


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhc-hhhHHHHHH
Q 016114          341 LRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF-PLKKRLSNL  385 (395)
Q Consensus       341 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~  385 (395)
                      +.+.        |....++..++.++...++..++. ..+.+....
T Consensus       149 l~~~--------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          149 ASLN--------PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHS--------TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred             HHHC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9862        333567888999999999999888 555555443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.43  E-value=1.1e-11  Score=88.02  Aligned_cols=124  Identities=19%  Similarity=0.154  Sum_probs=105.3

Q ss_pred             ChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114           54 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  133 (395)
Q Consensus        54 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  133 (395)
                      ..+.....+..+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+.++.+++..   
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---   75 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---   75 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence            35677888999999999999999999999999986        3455778999999999999999999999999986   


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCCh
Q 016114          134 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG  203 (395)
Q Consensus       134 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  203 (395)
                           .|....++..+|.++...|++++|+.+++++++..       ++.   ..++..++.++...|++
T Consensus        76 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------p~~---~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           76 -----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-------PDN---ETYKSNLKIAELKLREA  130 (131)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTC---HHHHHHHHHHHHHHTTC
T ss_pred             -----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-------ccc---hHHHHHHHHHHHHHhcC
Confidence                 23445678999999999999999999999999862       233   34567899999888875

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.42  E-value=2.6e-12  Score=95.35  Aligned_cols=105  Identities=13%  Similarity=0.090  Sum_probs=94.4

Q ss_pred             CCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 016114           11 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE   90 (395)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   90 (395)
                      ..++..+..+..+|.+++..|++++|+.+|++++.+.        |....++..+|.++...|++++|+..|++++.+  
T Consensus         5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--   74 (164)
T 3sz7_A            5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--   74 (164)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence            3567788899999999999999999999999999873        334568999999999999999999999999987  


Q ss_pred             HhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114           91 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  131 (395)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  131 (395)
                            .|....++..+|.++...|++++|+.+|++++.+.
T Consensus        75 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           75 ------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence                  46678899999999999999999999999999874

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.42  E-value=5e-13  Score=108.44  Aligned_cols=195  Identities=12%  Similarity=0.034  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   95 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   95 (395)
                      .+..+..+|..+...|++++|+..|++++...        |....++.++|.++...|++++|+..+++++.+       
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------   67 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------   67 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            35678899999999999999999999999862        234567889999999999999999999999875       


Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                       .|....+++.+|.++...|++++|+..|++++.+.......-. ........          ..++..+....    ..
T Consensus        68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~~~~~~~~----------~~~~~~~~~~~----~~  131 (281)
T 2c2l_A           68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-DDIPSALR----------IAKKKRWNSIE----ER  131 (281)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC-SHHHHHHH----------HHHHHHHHHHH----HT
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH-HHHHHHHH----------HHHHHHHHHHH----HH
Confidence             5677789999999999999999999999999998654210000 11111111          11111111111    11


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhh-hcHHHHHHHHHH
Q 016114          176 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS-KNFVEAERLLRI  254 (395)
Q Consensus       176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~  254 (395)
                         ..+..+.+.   ..++.+.  .|++++|++.++++++.        .|........++.++... +.+++|...|.+
T Consensus       132 ---~~~~~~~i~---~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~  195 (281)
T 2c2l_A          132 ---RIHQESELH---SYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQ  195 (281)
T ss_dssp             ---CCCCCCHHH---HHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHhhhHHHH---HHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence               123333332   2344433  68889999888887763        233444555566666655 778889988887


Q ss_pred             HHH
Q 016114          255 CLD  257 (395)
Q Consensus       255 a~~  257 (395)
                      +.+
T Consensus       196 a~~  198 (281)
T 2c2l_A          196 VDE  198 (281)
T ss_dssp             SSC
T ss_pred             hhc
Confidence            754

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.42  E-value=6.6e-10  Score=90.51  Aligned_cols=226  Identities=7%  Similarity=-0.056  Sum_probs=162.0

Q ss_pred             HhhCchh-HHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCC----------hHHHHHHHHHHHHHHHHHhCCC
Q 016114           70 GSIGRAK-KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK----------AVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        70 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      ...|+++ +|+..+.+++.+        +|....+++..+.+....+.          +++++.++..++..        
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------  103 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------  103 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             HHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------
Confidence            4567766 789999988875        67788888888888877765          56677777777654        


Q ss_pred             ChhHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 016114          139 DGRVGMAMCSLAHAKCANGN--AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR-GQEGRELLEECLL  215 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~  215 (395)
                      +|....++...+.++...|+  +++++.++.++++...       .+   ..++...+.+....|. ++++++++.+++.
T Consensus       104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-------rN---y~AW~~R~~vl~~l~~~~~eel~~~~~~I~  173 (331)
T 3dss_A          104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-------RN---FHCWDYRRFVAAQAAVAPAEELAFTDSLIT  173 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-------TC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-------CC---HHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence            56667889999999999994  8999999999998532       22   4567888889999998 5899999999987


Q ss_pred             HHHhhhCCCChhHHHHHHHHHHHHHhh--------------hcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 016114          216 ITEKYKGKEHPSFVTHLLNLAASYSRS--------------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL  281 (395)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  281 (395)
                      .        +|....+++..+.++...              +.++++++++.+++.+        +|....++..+..++
T Consensus       174 ~--------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll  237 (331)
T 3dss_A          174 R--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLL  237 (331)
T ss_dssp             H--------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHH
T ss_pred             H--------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Confidence            5        456667888888888776              6789999999999874        566677777665555


Q ss_pred             Hhc-----------CChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114          282 YHL-----------NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  343 (395)
Q Consensus       282 ~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  343 (395)
                      ...           +.++++++.+++++++.     |+......+...+.......|..+ +...++.+.+++
T Consensus       238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~~-----pd~~w~l~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~  304 (331)
T 3dss_A          238 GAGSGRCELSVEKSTVLQSELESCKELQELE-----PENKWCLLTIILLMRALDPLLYEK-ETLQYFSTLKAV  304 (331)
T ss_dssp             HSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHCTTTTHH-HHHHHHHHHHHH
T ss_pred             HhccCccccchHHHHHHHHHHHHHHHHHhhC-----cccchHHHHHHHHHHhhcccccHH-HHHHHHHHHHHh
Confidence            554           34667777777777654     444332222222211222345445 777777777764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.41  E-value=3.3e-13  Score=117.80  Aligned_cols=180  Identities=11%  Similarity=-0.002  Sum_probs=129.7

Q ss_pred             hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114           98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  177 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  177 (395)
                      +..+..+..+|.++...|++++|+.+|++++++        +|....++.++|.++..+|++++|+..+++++++     
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----   69 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----   69 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence            455677888999999999999999999999987        4555788999999999999999999999999984     


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHH--HHhhhcHHHHHHHHH--
Q 016114          178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS--YSRSKNFVEAERLLR--  253 (395)
Q Consensus       178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~~~~~~A~~~~~--  253 (395)
                        .++.   ..++.++|.+|...|++++|+..+++++++.        |....++..++.+  +..+|++++|++.++  
T Consensus        70 --~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~  136 (477)
T 1wao_1           70 --DKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVK--------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  136 (477)
T ss_dssp             --CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred             --CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence              2333   4567899999999999999999999999862        2223356667777  888999999999998  


Q ss_pred             ---------HHHHHHHHhhCCCCcc---hHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHH
Q 016114          254 ---------ICLDIMTKTVGPDDQS---ISFPMLHLGITLYHLNRDK--EAEKLVLEALYIREI  303 (395)
Q Consensus       254 ---------~a~~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~  303 (395)
                               +++.+.....++..+.   ....+..+...+...+...  .+..++.++.++...
T Consensus       137 ~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~  200 (477)
T 1wao_1          137 RSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK  200 (477)
T ss_dssp             CSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             chhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence                     5554333322332332   2333444555555555544  445577777777654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.41  E-value=8.9e-12  Score=88.74  Aligned_cols=124  Identities=15%  Similarity=0.064  Sum_probs=103.8

Q ss_pred             CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHH
Q 016114          181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT  260 (395)
Q Consensus       181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  260 (395)
                      +..+.....+..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++..  
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--   79 (133)
T 2lni_A           10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--   79 (133)
T ss_dssp             CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence            344556778899999999999999999999999874        3444678899999999999999999999999984  


Q ss_pred             HhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC
Q 016114          261 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE  328 (395)
Q Consensus       261 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  328 (395)
                            .|....++..+|.++...|++++|+.++++++...        |....++..++.++...|+
T Consensus        80 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 ------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD--------SSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------GGGTHHHHHHHHHHHHHTC
T ss_pred             ------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhcC
Confidence                  35567789999999999999999999999998753        3344567888888887764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.41  E-value=2.6e-12  Score=96.72  Aligned_cols=122  Identities=13%  Similarity=0.179  Sum_probs=100.9

Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHh
Q 016114           27 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS  106 (395)
Q Consensus        27 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  106 (395)
                      +...|++++|+..+++++...        |....++..+|.++...|++++|+.+|++++.+.        |....++..
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~   83 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN--------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA   83 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC--------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence            467889999999999998862        2334678899999999999999999999999872        445678899


Q ss_pred             HHHH-HHHcCCh--HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          107 LGSL-FIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       107 l~~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      +|.+ +...|++  ++|+.++++++..        .|....++..+|.++...|++++|+..++++++.
T Consensus        84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            9999 8899999  9999999999987        3444567899999999999999999999999985

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.40  E-value=1.8e-11  Score=90.47  Aligned_cols=130  Identities=15%  Similarity=0.092  Sum_probs=101.9

Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC-CCC-------chHHHHHHHHHHHHHHHcCChHHHHHHH
Q 016114          139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM-SLD-------DSIMENMRIDLAELLHIVGRGQEGRELL  210 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~  210 (395)
                      ....+..+...|..+...|++++|+..|.+++.+....... .+.       .+....++.++|.++...|++++|+..+
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            34567789999999999999999999999999986543110 111       3455678899999999999999999999


Q ss_pred             HHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchH-HHHHHHHHHHHhc
Q 016114          211 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS-FPMLHLGITLYHL  284 (395)
Q Consensus       211 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~la~~~~~~  284 (395)
                      ++++.+        +|....++..+|.++...|++++|+..|++++.+        .|... .+...++.+....
T Consensus        87 ~~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           87 SEVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHH
Confidence            999986        3556678999999999999999999999999985        34443 3444555554443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.39  E-value=1.5e-13  Score=119.93  Aligned_cols=181  Identities=11%  Similarity=0.048  Sum_probs=130.1

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      ++..+..+..+|..+...|++++|+..|++++++        +|....++..+|.++...|++++|+..+++++++    
T Consensus         2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----   69 (477)
T 1wao_1            2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL----   69 (477)
T ss_dssp             CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----
T ss_pred             hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----
Confidence            4566777888999999999999999999999987        2344678999999999999999999999999986    


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--HHHCCCHHHHHHHHH---
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA--KCANGNAEEAVELYK---  167 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~---  167 (395)
                          +|....++.++|.+|..+|++++|+..+++++++     .+++   ..++..++.+  +...|++++|+..++   
T Consensus        70 ----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~  137 (477)
T 1wao_1           70 ----DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHD---KDAKMKYQECNKIVKQKAFERAIAGDEHKR  137 (477)
T ss_dssp             ----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTC---TTHHHHHHHHHHHHHHHHHCCC------CC
T ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence                5677889999999999999999999999999987     2223   3456667776  888899999999998   


Q ss_pred             --------HHHHHHHhcccCCCCch---HHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHHh
Q 016114          168 --------KALRVIKDSNYMSLDDS---IMENMRIDLAELLHIVGRGQ--EGRELLEECLLITEK  219 (395)
Q Consensus       168 --------~a~~~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~  219 (395)
                              +++.+....  .++..+   ........+...+...+.+.  .+..++.++.++...
T Consensus       138 ~~~~~~~~~al~~~~~~--~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~  200 (477)
T 1wao_1          138 SVVDSLDIESMTIEDEY--SGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK  200 (477)
T ss_dssp             STTTCCTTSSCCCCTTC--CSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             hhHhhhhhhhccccccc--cccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence                    444432221  112111   12223344455555555543  444567777776654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.39  E-value=1.1e-11  Score=91.92  Aligned_cols=103  Identities=16%  Similarity=0.148  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 016114           55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  134 (395)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  134 (395)
                      .+..+..+..+|.++...|++++|+..|++++.+        .|....++..+|.++...|++++|+..|++++.+    
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----   74 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV----   74 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence            4567788999999999999999999999999987        4666789999999999999999999999999987    


Q ss_pred             hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114          135 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus       135 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                          +|....++.++|.++...|++++|+.+|++++++.
T Consensus        75 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           75 ----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence                35556789999999999999999999999999975

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.39  E-value=1.1e-12  Score=114.08  Aligned_cols=155  Identities=19%  Similarity=0.183  Sum_probs=122.6

Q ss_pred             hhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC-------CChhHH
Q 016114           71 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE-------NDGRVG  143 (395)
Q Consensus        71 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~  143 (395)
                      ..+++++|+..++.++..        .|..+..+..+|..+...|++++|+..|.+++.+.......       ..+...
T Consensus       246 ~l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~  317 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLL  317 (457)
T ss_dssp             EEEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHH
Confidence            445677788777776654        45677889999999999999999999999999975321000       012236


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114          144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  223 (395)
Q Consensus       144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  223 (395)
                      .++.++|.++..+|++++|+..+++++++.       ++.   ..+++++|.+|...|++++|+..|++++++       
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-------p~~---~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-------  380 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-------SAN---EKGLYRRGEAQLLMNEFESAKGDFEKVLEV-------  380 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------Ccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence            789999999999999999999999999863       222   567799999999999999999999999875       


Q ss_pred             CChhHHHHHHHHHHHHHhhhcHHHHHHH
Q 016114          224 EHPSFVTHLLNLAASYSRSKNFVEAERL  251 (395)
Q Consensus       224 ~~~~~~~~~~~la~~~~~~~~~~~A~~~  251 (395)
                       .|....++..++.++...++++++...
T Consensus       381 -~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          381 -NPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             -C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             455567889999999999999888753

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.37  E-value=2e-11  Score=91.79  Aligned_cols=122  Identities=14%  Similarity=0.212  Sum_probs=99.6

Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHH
Q 016114          111 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  190 (395)
Q Consensus       111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  190 (395)
                      +...|++++|+..+++++..        .|....++..+|.++...|++++|+.+|++++++.       ++.   ..++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~---~~~~   81 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GEN---AELY   81 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSC---HHHH
T ss_pred             hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCC---HHHH
Confidence            45678999999999999986        34445789999999999999999999999999874       222   3456


Q ss_pred             HHHHHH-HHHcCCh--HHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 016114          191 IDLAEL-LHIVGRG--QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  258 (395)
Q Consensus       191 ~~la~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  258 (395)
                      ..+|.+ +...|++  ++|+.++++++..        .|....++..+|.++...|++++|+..+++++.+
T Consensus        82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           82 AALATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            889999 8899999  9999999999986        2444567889999999999999999999999883

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.37  E-value=3.4e-11  Score=85.27  Aligned_cols=102  Identities=10%  Similarity=0.105  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCCh
Q 016114           19 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA   98 (395)
Q Consensus        19 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   98 (395)
                      .++.+|..+...|++++|+..|+++++.     .++++....++..+|.++...|++++|+..|++++..     .++++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~   73 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD   73 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence            4678999999999999999999999886     3445555678999999999999999999999999986     33444


Q ss_pred             hhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           99 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      ....++..+|.++...|++++|...+++++..
T Consensus        74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999986

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.37  E-value=1.5e-10  Score=94.59  Aligned_cols=243  Identities=12%  Similarity=-0.003  Sum_probs=176.8

Q ss_pred             hhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcc
Q 016114           99 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRVIKDSN  177 (395)
Q Consensus        99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~~  177 (395)
                      +...++..+..+....+..++|+.++.+++.+        +|....+++..+.++...| .+++++.++++++..     
T Consensus        52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-----  118 (349)
T 3q7a_A           52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-----  118 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----
Confidence            34445555666666677778999999999987        5666788999999999999 599999999999874     


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHH--------H
Q 016114          178 YMSLDDSIMENMRIDLAELLHIV-G-RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV--------E  247 (395)
Q Consensus       178 ~~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--------~  247 (395)
                        .|..   ..+++..+.++... + ++++++.++.++++        .+|....++...+.+....|.++        +
T Consensus       119 --nPKn---y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--------~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~e  185 (349)
T 3q7a_A          119 --NLKS---YQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--------PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGS  185 (349)
T ss_dssp             --TCCC---HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--------SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             --CCCc---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHhccccccchhhHHH
Confidence              2333   45667888888887 7 89999999988876        35666778888999988888887        8


Q ss_pred             HHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Q 016114          248 AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR-------DKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  320 (395)
Q Consensus       248 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  320 (395)
                      +++++.++++.        +|....++...+.++...++       ++++++++.+++.+.        |....++..+.
T Consensus       186 ELe~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~--------P~n~SaW~Ylr  249 (349)
T 3q7a_A          186 ELDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI--------PHNVSAWNYLR  249 (349)
T ss_dssp             HHHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHH
T ss_pred             HHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC--------CCCHHHHHHHH
Confidence            89988888873        57778899999999999887       678888888888753        44445677788


Q ss_pred             HHHHHcCCchh-----------HHHH-HHHHHHHHHHhccCCC-----CHHHHHHHHHHHHHHHHhcchhhhchhhHHHH
Q 016114          321 SIQTRLGEDDT-----------KLLE-LLKRVLRIQEREFGSE-----SEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  383 (395)
Q Consensus       321 ~~~~~~~~~~~-----------~A~~-~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  383 (395)
                      .++...|....           ..+. .+....+......+..     .+....++..|+.+|...|+.++|..+++...
T Consensus       250 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~  329 (349)
T 3q7a_A          250 GFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS  329 (349)
T ss_dssp             HHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            88888776510           0000 0122222233322221     13345678889999999999999999988865

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.37  E-value=6.4e-12  Score=109.25  Aligned_cols=143  Identities=17%  Similarity=0.282  Sum_probs=116.9

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC-------cChHHHHHHHHHHHHHHHhhCchhHHHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG-------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR   84 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~   84 (395)
                      ..|..+..+..+|..++..|+|++|+..|++++.+......       ...+....++.++|.++...|++++|+..|++
T Consensus       263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  342 (457)
T 1kt0_A          263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK  342 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            35778889999999999999999999999999998643210       01234478899999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 016114           85 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  164 (395)
Q Consensus        85 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  164 (395)
                      ++.+        .|....+++++|.+|..+|++++|+..|++++++        .|....++..++.++...+++++|..
T Consensus       343 al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          343 ALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9997        5667889999999999999999999999999976        45556788999999999999988774


Q ss_pred             H-HHHHH
Q 016114          165 L-YKKAL  170 (395)
Q Consensus       165 ~-~~~a~  170 (395)
                      . +.+++
T Consensus       407 ~~~~~~f  413 (457)
T 1kt0_A          407 RIYANMF  413 (457)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHH
Confidence            3 44433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.37  E-value=1.1e-09  Score=89.26  Aligned_cols=223  Identities=9%  Similarity=0.017  Sum_probs=161.3

Q ss_pred             HhhhcHH-HHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCc----------hhHHHHHHHHHHHHHHHhcCCC
Q 016114           28 STLENYE-KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR----------AKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        28 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      ...|+++ +|+.++.+++.+        .|....+++..+.+....|.          +++++.++..++..        
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------  103 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------  103 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             HHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------
Confidence            3456665 688888888765        34556677777877777665          56777777777764        


Q ss_pred             ChhhhhhHHhHHHHHHHcCC--hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
Q 016114           97 SADLVLPLFSLGSLFIKEGK--AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN-AEEAVELYKKALRVI  173 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~  173 (395)
                      +|....++...+.++...|+  +++++.++.++++.        +|....++...+.+....|. +++++.++.++++..
T Consensus       104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~  175 (331)
T 3dss_A          104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN  175 (331)
T ss_dssp             CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence            67788899999999999994  89999999999986        56667889999999999998 699999999999852


Q ss_pred             HhcccCCCCchHHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHH
Q 016114          174 KDSNYMSLDDSIMENMRIDLAELLHIV--------------GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY  239 (395)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  239 (395)
                             +.+   ..++...+.++...              +.++++++++.+++.+        +|....+++.+..++
T Consensus       176 -------p~N---~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~SaW~Y~r~ll  237 (331)
T 3dss_A          176 -------FSN---YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLL  237 (331)
T ss_dssp             -------SCC---HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHH
T ss_pred             -------CCC---HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH
Confidence                   222   34567777777766              4578889999988875        344455666555555


Q ss_pred             Hhh-----------hcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHH---hcCChHHHHHHHHHHHHH
Q 016114          240 SRS-----------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY---HLNRDKEAEKLVLEALYI  300 (395)
Q Consensus       240 ~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~  300 (395)
                      ...           +.++++++.+++++++        .|+...++..++.+..   ..|..++...++.+.+++
T Consensus       238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~--------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          238 GAGSGRCELSVEKSTVLQSELESCKELQEL--------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             HSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             HhccCccccchHHHHHHHHHHHHHHHHHhh--------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence            444           5678888888888774        3444555554443322   356677777787777664

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.37  E-value=1.9e-11  Score=85.93  Aligned_cols=118  Identities=18%  Similarity=0.332  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   95 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   95 (395)
                      .+.++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+..+++++..       
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------   72 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------   72 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence            36778999999999999999999999998762        223457889999999999999999999999876       


Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  157 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  157 (395)
                       .|....++..+|.++...|++++|..++++++..        .|....++..++.++...|
T Consensus        73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred             -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence             3445678889999999999999999999999876        3444456777887776543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.36  E-value=5.4e-11  Score=84.17  Aligned_cols=102  Identities=13%  Similarity=0.142  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114           61 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  140 (395)
Q Consensus        61 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  140 (395)
                      .++.+|.++...|++++|+..|++++..     .++++....++..+|.++...|++++|+..|++++..     .++++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~   73 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD   73 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence            4677899999999999999999999886     3445555578999999999999999999999999986     34555


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      ....++..+|.++...|++++|+..+++++..
T Consensus        74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999985

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.34  E-value=5.7e-10  Score=91.29  Aligned_cols=243  Identities=9%  Similarity=-0.080  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcC-ChHHHHHHHHHHHHHHHHH
Q 016114           56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKIYTKV  134 (395)
Q Consensus        56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~  134 (395)
                      +....++..+..+....+..++|+..+.+++.+        +|....+++..+.++...| .+++++..+.+++..    
T Consensus        51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----  118 (349)
T 3q7a_A           51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----  118 (349)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----
Confidence            355556666666666677778999999999987        6788889999999999999 599999999999865    


Q ss_pred             hCCCChhHHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChH--------
Q 016114          135 YGENDGRVGMAMCSLAHAKCAN-G-NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ--------  204 (395)
Q Consensus       135 ~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------  204 (395)
                          +|....+++..+.++... + ++++++.++.++++.       .+.+   ..++...+.+....|.++        
T Consensus       119 ----nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~-------dpkN---y~AW~~R~wvl~~l~~~~~~~~~~~~  184 (349)
T 3q7a_A          119 ----NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP-------DPKN---YHTWAYLHWLYSHFSTLGRISEAQWG  184 (349)
T ss_dssp             ----TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS-------CTTC---HHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             ----CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHhccccccchhhHH
Confidence                566778899999999887 7 899999999998863       2222   456677888888888887        


Q ss_pred             HHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhc-------HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHH
Q 016114          205 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN-------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHL  277 (395)
Q Consensus       205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  277 (395)
                      +++++++++++.        ++....+++..+.+....++       ++++++++.+++.+        +|....++..+
T Consensus       185 eELe~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Yl  248 (349)
T 3q7a_A          185 SELDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYL  248 (349)
T ss_dssp             HHHHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHH
Confidence            888888888875        45666789999999888876       78899999888873        57777888888


Q ss_pred             HHHHHhcCChHH------------HHH-HHHHHHHHHHHHcCCC-----ChHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114          278 GITLYHLNRDKE------------AEK-LVLEALYIREIAFGKD-----SLPVGEALDCLVSIQTRLGEDDTKLLELLKR  339 (395)
Q Consensus       278 a~~~~~~g~~~~------------A~~-~~~~al~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  339 (395)
                      ..++...|+...            .+. .+....+...+..+..     .+....++..|+.+|...|+.+ +|.+.++.
T Consensus       249 r~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~-~a~~~~~~  327 (349)
T 3q7a_A          249 RGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVD-DAAKVFEK  327 (349)
T ss_dssp             HHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHH-HHHHHHHH
T ss_pred             HHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHH
Confidence            888887776411            000 0011111111111111     1334557888999999999888 88888877


Q ss_pred             HH
Q 016114          340 VL  341 (395)
Q Consensus       340 al  341 (395)
                      ..
T Consensus       328 l~  329 (349)
T 3q7a_A          328 LS  329 (349)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.34  E-value=3.4e-11  Score=101.37  Aligned_cols=135  Identities=13%  Similarity=0.141  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhc--------CcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY--------GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV   85 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   85 (395)
                      ...+..+..+|..++..|++++|+..|++++++.....        ....+....++.++|.++...|++++|+.+++++
T Consensus       220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34567789999999999999999999999999765420        0135677889999999999999999999999999


Q ss_pred             HHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 016114           86 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  164 (395)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  164 (395)
                      +++        .|....+++.+|.+|..+|++++|+..|++++++        .|....++..++.++...++++++..
T Consensus       300 l~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          300 LEI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            985        5677889999999999999999999999999987        34444677788888888887777654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.34  E-value=8.3e-11  Score=83.34  Aligned_cols=107  Identities=14%  Similarity=0.098  Sum_probs=91.7

Q ss_pred             hhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccc
Q 016114           99 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  178 (395)
Q Consensus        99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  178 (395)
                      ..+..+..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++......  
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--   71 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--   71 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--
Confidence            34567889999999999999999999999986        23445678999999999999999999999999987642  


Q ss_pred             CCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          179 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                       .++......++..+|.++...|++++|+.++++++..
T Consensus        72 -~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           72 -REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence             3344445778899999999999999999999999885

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.34  E-value=3.5e-11  Score=86.17  Aligned_cols=104  Identities=15%  Similarity=0.131  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      |..+..+..+|..+...|++++|+..|++++...        |....++..+|.++...|++++|+..+++++.+     
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----   72 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-----   72 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence            4456778999999999999999999999999862        233568899999999999999999999999987     


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  133 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  133 (395)
                         .|....++..+|.++...|++++|+..+++++.+...
T Consensus        73 ---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           73 ---DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ---CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence               4567789999999999999999999999999998655

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.32  E-value=7.2e-11  Score=84.53  Aligned_cols=103  Identities=18%  Similarity=0.141  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114           57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  136 (395)
                      ..+..+..+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+..+++++.+      
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------   72 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------   72 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            34567889999999999999999999999987        4566789999999999999999999999999987      


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114          137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus       137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                        .|....++..+|.++...|++++|+..+++++++...
T Consensus        73 --~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           73 --DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             --CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence              3445678999999999999999999999999998764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.32  E-value=8.9e-11  Score=82.36  Aligned_cols=117  Identities=21%  Similarity=0.372  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114           59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      ..++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++..        
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------   72 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------   72 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence            567889999999999999999999999876        3445678899999999999999999999999876        


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcC
Q 016114          139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG  201 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  201 (395)
                      .|....++..+|.++...|++++|..++++++...       |+.   ..++..++.++...|
T Consensus        73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNN---AEAKQNLGNAKQKQG  125 (125)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCc---HHHHHHHHHHHHhcc
Confidence            23335678899999999999999999999998852       333   234567777776544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=4.2e-11  Score=87.00  Aligned_cols=105  Identities=14%  Similarity=0.066  Sum_probs=92.5

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      +|..+..++.+|..+...|++++|+.+|+++++.     .++++....++..+|.++...|++++|+..+++++..    
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----   94 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK----   94 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence            3556788899999999999999999999999875     3444556788999999999999999999999999987    


Q ss_pred             cCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                          .|....++..+|.++...|++++|..++++++.+
T Consensus        95 ----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A           95 ----DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             ----TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ----CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence                3455788999999999999999999999999987

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.30  E-value=9.9e-11  Score=82.92  Aligned_cols=106  Identities=8%  Similarity=0.152  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC
Q 016114           58 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  137 (395)
Q Consensus        58 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  137 (395)
                      .+..+..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++...... +.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~   73 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE   73 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence            4567889999999999999999999999986        34556789999999999999999999999999986542 22


Q ss_pred             CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          138 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       138 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      +.+....++..+|.++...|++++|+.+++++++.
T Consensus        74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            23334778999999999999999999999999985

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.30  E-value=2.2e-11  Score=84.93  Aligned_cols=97  Identities=14%  Similarity=0.026  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114           61 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  140 (395)
Q Consensus        61 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  140 (395)
                      .++.+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+..|++++++        +|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P   82 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP   82 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence            4677899999999999999999999987        5777889999999999999999999999999987        45


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114          141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus       141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                      ....++..+|.++...|++++|+..++++++..
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            555688999999999999999999999998753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.30  E-value=9.2e-12  Score=86.83  Aligned_cols=101  Identities=11%  Similarity=0.009  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCC
Q 016114          273 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSES  352 (395)
Q Consensus       273 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  352 (395)
                      .+..+|..+...|++++|+..++++++..        |....++..+|.++...|+++ +|+..|++++++     .   
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~lg~~~~~~g~~~-~A~~~~~~al~l-----~---   81 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--------PEREEAWRSLGLTQAENEKDG-LAIIALNHARML-----D---   81 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH-----C---
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh-----C---
Confidence            46789999999999999999999999854        444567899999999999999 999999999986     2   


Q ss_pred             HHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          353 EEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       353 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                      |+...++..+|.++...|++++|+..+++++++.++..
T Consensus        82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            33456889999999999999999999999999888654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.29  E-value=2.9e-10  Score=91.13  Aligned_cols=255  Identities=12%  Similarity=-0.013  Sum_probs=164.6

Q ss_pred             HHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 016114           67 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  146 (395)
Q Consensus        67 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  146 (395)
                      .-.+..|+|..++.-..+        ..+..+.  .....+.++|..+|++....               .+.|. ..+.
T Consensus        21 kn~fy~G~yq~~i~e~~~--------~~~~~~~--~~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a~   74 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQEIEK--------FSKVTDN--TLLFYKAKTLLALGQYQSQD---------------PTSKL-GKVL   74 (310)
T ss_dssp             HHHHTTTCHHHHTHHHHT--------SSCCCCH--HHHHHHHHHHHHTTCCCCCC---------------SSSTT-HHHH
T ss_pred             HHHHHhhHHHHHHHHHHh--------cCccchH--HHHHHHHHHHHHcCCCccCC---------------CCCHH-HHHH
Confidence            455678999888863221        1222333  34555677888888887421               12332 2233


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh
Q 016114          147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  226 (395)
Q Consensus       147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  226 (395)
                      ..++..+.  ++   |+..+++.++.       ++..+   ..+..+|.++...|++++|+.++.+.+..     + ..+
T Consensus        75 ~~la~~~~--~~---a~~~l~~l~~~-------~~~~~---~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~-~~~  133 (310)
T 3mv2_B           75 DLYVQFLD--TK---NIEELENLLKD-------KQNSP---YELYLLATAQAILGDLDKSLETCVEGIDN-----D-EAE  133 (310)
T ss_dssp             HHHHHHHT--TT---CCHHHHHTTTT-------SCCCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----S-CST
T ss_pred             HHHHHHhc--cc---HHHHHHHHHhc-------CCCCc---HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----C-CCc
Confidence            44444332  22   66666665431       11222   22357999999999999999999987652     1 113


Q ss_pred             hHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcc----hHHHHHHH--HHHHHhcC--ChHHHHHHHHHHH
Q 016114          227 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS----ISFPMLHL--GITLYHLN--RDKEAEKLVLEAL  298 (395)
Q Consensus       227 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al  298 (395)
                      ....++..++.++..+|+.+.|.+.++++.+.        +|+    .-.+...+  |++....|  ++.+|...|+++.
T Consensus       134 ~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~  205 (310)
T 3mv2_B          134 GTTELLLLAIEVALLNNNVSTASTIFDNYTNA--------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS  205 (310)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            67788889999999999999999999987663        221    11233444  44466566  9999999999975


Q ss_pred             HHHHHHcCCCChH--HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHhcchhh
Q 016114          299 YIREIAFGKDSLP--VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE--SEEVMLTLKKVVSYLDKLGRKEE  374 (395)
Q Consensus       299 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~  374 (395)
                      +.        .|.  ....+.+   ++..+|+++ +|...++..++.....-..+  .|..+.++.+++.+....|+  +
T Consensus       206 ~~--------~p~~~~~~lLln---~~~~~g~~~-eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~  271 (310)
T 3mv2_B          206 QT--------FPTWKTQLGLLN---LHLQQRNIA-EAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--D  271 (310)
T ss_dssp             TT--------SCSHHHHHHHHH---HHHHHTCHH-HHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--T
T ss_pred             Hh--------CCCcccHHHHHH---HHHHcCCHH-HHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--H
Confidence            42        232  2222333   899999999 99999997776543210000  24457788888888888997  8


Q ss_pred             hchhhHHHHHHHHHHH
Q 016114          375 KFPLKKRLSNLRMKYK  390 (395)
Q Consensus       375 A~~~~~~a~~~~~~~~  390 (395)
                      |.++++++.+..|++.
T Consensus       272 a~~l~~qL~~~~P~hp  287 (310)
T 3mv2_B          272 TEDLTNQLVKLDHEHA  287 (310)
T ss_dssp             THHHHHHHHHTTCCCH
T ss_pred             HHHHHHHHHHhCCCCh
Confidence            9999999988766543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.28  E-value=1.2e-10  Score=80.74  Aligned_cols=113  Identities=12%  Similarity=0.031  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   95 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   95 (395)
                      .+..++.+|..+...|++++|+..+++++...        |....++..+|.++...|++++|+..+++++..       
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD--------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-------   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------
Confidence            35678899999999999999999999998862        223557889999999999999999999999986       


Q ss_pred             CChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 016114           96 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  152 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  152 (395)
                       .|....++..+|.++...|++++|...++++++.        .|....++..++.+
T Consensus        68 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~  115 (118)
T 1elw_A           68 -KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNM  115 (118)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHH
T ss_pred             -CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHh
Confidence             4556778999999999999999999999999875        23333455555554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.28  E-value=9.1e-11  Score=98.76  Aligned_cols=134  Identities=16%  Similarity=0.163  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc--------CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHH
Q 016114           57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR--------GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  128 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  128 (395)
                      ..+..+..+|..+...|++++|+..|++++.+.....        ....+....++.++|.++..+|++++|+.++++++
T Consensus       221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            3456688899999999999999999999999655420        01246677899999999999999999999999999


Q ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHH
Q 016114          129 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE  208 (395)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  208 (395)
                      ++        +|....++..+|.+|...|++++|+..|++++++.       ++.   ..++..++.++...++++++..
T Consensus       301 ~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-------P~~---~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          301 EI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-------PED---KAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence            75        45567889999999999999999999999999863       333   3345778888888888777654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.27  E-value=1.9e-08  Score=90.76  Aligned_cols=231  Identities=12%  Similarity=0.118  Sum_probs=169.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Q 016114          119 DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV-ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL  197 (395)
Q Consensus       119 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~  197 (395)
                      .....|++++..        .|.....+...+..+...|+.++|. ..|++|+..+       |..   ...+...+...
T Consensus       327 Rv~~~Ye~aL~~--------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-------P~s---~~Lwl~~a~~e  388 (679)
T 4e6h_A          327 RMTYVYMQAAQH--------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-------PNS---AVLAFSLSEQY  388 (679)
T ss_dssp             HHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-------TTC---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHH
Confidence            345678888775        3445567888888888999999997 9999998743       222   33457788899


Q ss_pred             HHcCChHHHHHHHHHHHHHHHhhh------CCCC--------hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q 016114          198 HIVGRGQEGRELLEECLLITEKYK------GKEH--------PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  263 (395)
Q Consensus       198 ~~~g~~~~A~~~~~~al~~~~~~~------~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  263 (395)
                      ...|++++|..+|++++.......      .+..        .....+|...+.+..+.|+.+.|..+|.+|+...    
T Consensus       389 e~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~----  464 (679)
T 4e6h_A          389 ELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK----  464 (679)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG----
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----
Confidence            999999999999999998642111      0110        1244567778888888999999999999998720    


Q ss_pred             CCCCcchHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 016114          264 GPDDQSISFPMLHLGITLYHLN-RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  342 (395)
Q Consensus       264 ~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~  342 (395)
                         .+.....+...|.+....| +.+.|..+|+++++..     ++.+..   +...+......|+.+ .|..+|++++.
T Consensus       465 ---~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-----p~~~~~---w~~y~~fe~~~~~~~-~AR~lferal~  532 (679)
T 4e6h_A          465 ---KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-----ATDGEY---INKYLDFLIYVNEES-QVKSLFESSID  532 (679)
T ss_dssp             ---GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TTCHHH---HHHHHHHHHHHTCHH-HHHHHHHHHTT
T ss_pred             ---CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCchHH---HHHHHHHHHhCCCHH-HHHHHHHHHHH
Confidence               1223445566676666665 4899999999999976     444443   456666777889988 99999999986


Q ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHH
Q 016114          343 IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  388 (395)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  388 (395)
                      ..     ++.......+......-...|+.+.+..+.+++.+..++
T Consensus       533 ~~-----~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          533 KI-----SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             TS-----SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred             hc-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            32     111245677777888888899999999999999887765

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.27  E-value=2e-11  Score=101.72  Aligned_cols=145  Identities=17%  Similarity=0.089  Sum_probs=90.4

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC--c-------ChHHHHHHHHHHHHHHHhhCchhHHHHHHH
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG--K-------TSILLVTSLLGMAKVLGSIGRAKKAVEIYH   83 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   83 (395)
                      .+..+..+..+|..++..|++++|+..|++++.+......  .       .......++.++|.++...|++++|+..++
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4667888999999999999999999999999987422100  0       000011478999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-HHHCCCHHHH
Q 016114           84 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA-KCANGNAEEA  162 (395)
Q Consensus        84 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A  162 (395)
                      +++.+        .|....+++++|.++..+|++++|+..|++++.+        .|....++..++.+ ....+..+++
T Consensus       255 ~al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          255 IVLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             HHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred             HHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99987        4667789999999999999999999999999876        34445567777777 4455677888


Q ss_pred             HHHHHHHHHHH
Q 016114          163 VELYKKALRVI  173 (395)
Q Consensus       163 ~~~~~~a~~~~  173 (395)
                      ...|.+++...
T Consensus       319 ~~~~~~~l~~~  329 (338)
T 2if4_A          319 KEMYKGIFKGK  329 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHhhCCC
Confidence            88888887753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=2.5e-10  Score=82.87  Aligned_cols=120  Identities=10%  Similarity=-0.005  Sum_probs=98.3

Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Q 016114          140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  219 (395)
Q Consensus       140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  219 (395)
                      +.....+..+|..+...|++++|+..|+++++.       .++++....++.++|.++...|++++|+..+++++...  
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--   95 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--   95 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--
Confidence            456678899999999999999999999999873       34554556788999999999999999999999998862  


Q ss_pred             hhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHH
Q 016114          220 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY  282 (395)
Q Consensus       220 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  282 (395)
                            |....++..+|.++...|++++|..++++++.+        .|....++..++.+..
T Consensus        96 ------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           96 ------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNISG  144 (148)
T ss_dssp             ------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHC
T ss_pred             ------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHh
Confidence                  334667889999999999999999999999884        3444555566665543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.23  E-value=7.4e-10  Score=76.68  Aligned_cols=98  Identities=18%  Similarity=0.163  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114           59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      +..+..+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|...+++++..        
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence            456888999999999999999999999986        3555778999999999999999999999999986        


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      .|....++..+|.++...|++++|...++++++.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            3444567899999999999999999999999874

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.20  E-value=7.2e-11  Score=98.36  Aligned_cols=143  Identities=17%  Similarity=0.086  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcC-CC--------ChhhhhhHHhHHHHHHHcCChHHHHHHHHH
Q 016114           56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG-TE--------SADLVLPLFSLGSLFIKEGKAVDAESVFSR  126 (395)
Q Consensus        56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  126 (395)
                      +..+..+..+|..++..|++++|+..|++++.+...... ..        ......++.++|.++...|++++|+.++++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            456677889999999999999999999999987311000 00        000113889999999999999999999999


Q ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHH-HHHcCChHH
Q 016114          127 ILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL-LHIVGRGQE  205 (395)
Q Consensus       127 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~  205 (395)
                      ++.+        +|....+++++|.+|...|++++|+..|++++++..       ++   ..++..++.+ ....+..++
T Consensus       256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-------~~---~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-------DD---KAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred             HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-------CC---HHHHHHHHHHHHHHHHHHHH
Confidence            9987        455567899999999999999999999999987632       22   2344667766 344567778


Q ss_pred             HHHHHHHHHHH
Q 016114          206 GRELLEECLLI  216 (395)
Q Consensus       206 A~~~~~~al~~  216 (395)
                      +...|.+++..
T Consensus       318 a~~~~~~~l~~  328 (338)
T 2if4_A          318 QKEMYKGIFKG  328 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHHhhCC
Confidence            88888887765

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.20  E-value=5.3e-11  Score=82.57  Aligned_cols=90  Identities=13%  Similarity=0.174  Sum_probs=76.2

Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHH
Q 016114           29 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG  108 (395)
Q Consensus        29 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  108 (395)
                      ..|++++|+.+|++++++     +.++|....++..+|.++...|++++|+..++++++.        .|....++..+|
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~   68 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA   68 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence            468999999999999874     2235788899999999999999999999999999987        466678999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHH
Q 016114          109 SLFIKEGKAVDAESVFSRILKIY  131 (395)
Q Consensus       109 ~~~~~~g~~~~A~~~~~~al~~~  131 (395)
                      .++...|++++|+..+++++...
T Consensus        69 ~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           69 MVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999873

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.19  E-value=7.3e-09  Score=83.08  Aligned_cols=182  Identities=11%  Similarity=0.024  Sum_probs=127.5

Q ss_pred             hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC
Q 016114          101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  180 (395)
Q Consensus       101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  180 (395)
                      ..++..+|.++...|++++|+..+.+++..     + +.+....+...++.++...|+.+.|.+.++++.+..       
T Consensus       100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~-~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~-------  166 (310)
T 3mv2_B          100 PYELYLLATAQAILGDLDKSLETCVEGIDN-----D-EAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI-------  166 (310)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----S-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----C-CCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence            344578999999999999999999998643     1 114677888899999999999999999999986642       


Q ss_pred             CC---chHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHhhhCCCChh--HHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114          181 LD---DSIMENMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKGKEHPS--FVTHLLNLAASYSRSKNFVEAERLLR  253 (395)
Q Consensus       181 ~~---~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~  253 (395)
                      ++   ......+...-|.+....|  ++.+|..+|+++...        .|.  ....+.+   ++..+|++++|...++
T Consensus       167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--------~p~~~~~~lLln---~~~~~g~~~eAe~~L~  235 (310)
T 3mv2_B          167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--------FPTWKTQLGLLN---LHLQQRNIAEAQGIVE  235 (310)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--------SCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------CCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence            21   0111112222344455556  999999999996542        232  2233333   8999999999999999


Q ss_pred             HHHHHHHHhhCCC--CcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHH
Q 016114          254 ICLDIMTKTVGPD--DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG  313 (395)
Q Consensus       254 ~a~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  313 (395)
                      .++.........+  .|....++.+++.+....|+  +|.+++.++.+..     |+||.+.
T Consensus       236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-----P~hp~i~  290 (310)
T 3mv2_B          236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-----HEHAFIK  290 (310)
T ss_dssp             HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-----CCCHHHH
T ss_pred             HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-----CCChHHH
Confidence            7665432210000  25667788888888888997  8888888887744     7887653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.17  E-value=1.9e-10  Score=79.69  Aligned_cols=90  Identities=16%  Similarity=0.244  Sum_probs=75.4

Q ss_pred             HcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 016114          199 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  278 (395)
Q Consensus       199 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  278 (395)
                      ..|++++|+.+|++++++     +.++|....++.++|.++...|++++|+..+++++.+        .|....++..+|
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~   68 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA   68 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence            468999999999999874     1225778889999999999999999999999999984        456678899999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHH
Q 016114          279 ITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       279 ~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      .++...|++++|+..+++++...
T Consensus        69 ~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           69 MVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999865

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.15  E-value=2.1e-10  Score=78.71  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=86.4

Q ss_pred             hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114           98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  177 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  177 (395)
                      |....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.+++++++.     
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----   69 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-----   69 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence            455678899999999999999999999999986        2334567899999999999999999999999984     


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 016114          178 YMSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLI  216 (395)
Q Consensus       178 ~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  216 (395)
                        .+. .....++..+|.++... |++++|+.++++++..
T Consensus        70 --~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           70 --IED-EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             --SCC-TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             --Ccc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence              233 11245678999999999 9999999999998764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.14  E-value=4.5e-09  Score=93.37  Aligned_cols=177  Identities=7%  Similarity=-0.036  Sum_probs=147.5

Q ss_pred             hhCch-hHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCC----------hHHHHHHHHHHHHHHHHHhCCCC
Q 016114           71 SIGRA-KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK----------AVDAESVFSRILKIYTKVYGEND  139 (395)
Q Consensus        71 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~  139 (395)
                      ..|++ ++|+..+.+++.+        .|....+++..+.++...|+          +++++..+.+++..        +
T Consensus        40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~  103 (567)
T 1dce_A           40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------N  103 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred             HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------C
Confidence            44544 5779999999987        67888999999999999988          89999999999876        5


Q ss_pred             hhHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHH
Q 016114          140 GRVGMAMCSLAHAKCANG--NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLI  216 (395)
Q Consensus       140 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~  216 (395)
                      |....++...+.++...|  ++++++.+++++++...       ..   ..+|...+.+....| .++++++++.++++.
T Consensus       104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-------~N---~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~  173 (567)
T 1dce_A          104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-------RN---FHCWDYRRFVAAQAAVAPAEELAFTDSLITR  173 (567)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-------TC---HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred             CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-------cc---ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            777789999999999999  77999999999999632       22   567788999999999 899999999988763


Q ss_pred             HHhhhCCCChhHHHHHHHHHHHHHhh--------------hcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHH
Q 016114          217 TEKYKGKEHPSFVTHLLNLAASYSRS--------------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY  282 (395)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~la~~~~~~--------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  282 (395)
                              +|....+|+..+.++...              +.++++++++.+++.+        .|....+|..++.++.
T Consensus       174 --------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~  237 (567)
T 1dce_A          174 --------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLG  237 (567)
T ss_dssp             --------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHS
T ss_pred             --------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHh
Confidence                    566677889999888774              7789999999999884        4666778899999999


Q ss_pred             hcCChHH
Q 016114          283 HLNRDKE  289 (395)
Q Consensus       283 ~~g~~~~  289 (395)
                      ..+++++
T Consensus       238 ~~~~~~~  244 (567)
T 1dce_A          238 RAEPHDV  244 (567)
T ss_dssp             CCCCCSC
T ss_pred             cCCCccc
Confidence            8888555

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.12  E-value=9.8e-11  Score=80.41  Aligned_cols=98  Identities=10%  Similarity=0.053  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114           59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      ..++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++..        
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------   69 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------   69 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence            345678899999999999999999999986        3455678899999999999999999999999976        


Q ss_pred             Chh--HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Q 016114          139 DGR--VGMAMCSLAHAKCAN-GNAEEAVELYKKALRV  172 (395)
Q Consensus       139 ~~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~  172 (395)
                      .|.  ...++..+|.++... |++++|+.++++++..
T Consensus        70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            233  457889999999999 9999999999998864

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.11  E-value=1.2e-07  Score=85.63  Aligned_cols=232  Identities=10%  Similarity=0.015  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 016114           77 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE-SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  155 (395)
Q Consensus        77 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  155 (395)
                      .....|++++..        .|.....+...+..+...|+.++|. ..|++|+..+        |.....+...+.....
T Consensus       327 Rv~~~Ye~aL~~--------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--------P~s~~Lwl~~a~~ee~  390 (679)
T 4e6h_A          327 RMTYVYMQAAQH--------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--------PNSAVLAFSLSEQYEL  390 (679)
T ss_dssp             HHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH
Confidence            345678888775        4567788899999999999999997 9999998752        3334567778889999


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcc----cCCCC--------chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114          156 NGNAEEAVELYKKALRVIKDSN----YMSLD--------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  223 (395)
Q Consensus       156 ~g~~~~A~~~~~~a~~~~~~~~----~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  223 (395)
                      .|++++|...|++++.......    ...|.        ......++...+....+.|..+.|..+|.+|++...    .
T Consensus       391 ~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~----~  466 (679)
T 4e6h_A          391 NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK----L  466 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG----G
T ss_pred             hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----C
Confidence            9999999999999998642110    00011        012344677778888889999999999999986411    1


Q ss_pred             CChhHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114          224 EHPSFVTHLLNLAASYSRSK-NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  302 (395)
Q Consensus       224 ~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  302 (395)
                      ..   ...+...|.+....+ +.+.|..+|+.+++.+        |.....+...+......|+.+.|..+|++++... 
T Consensus       467 ~~---~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~-  534 (679)
T 4e6h_A          467 VT---PDIYLENAYIEYHISKDTKTACKVLELGLKYF--------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI-  534 (679)
T ss_dssp             SC---THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS-
T ss_pred             CC---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-
Confidence            11   233445566666655 4899999999999853        2233445667777888999999999999998743 


Q ss_pred             HHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 016114          303 IAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE  345 (395)
Q Consensus       303 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~  345 (395)
                          ++.......+......-...|+.+ .+....+++.+.+.
T Consensus       535 ----~~~~~~~~lw~~~~~fE~~~G~~~-~~~~v~~R~~~~~P  572 (679)
T 4e6h_A          535 ----SDSHLLKMIFQKVIFFESKVGSLN-SVRTLEKRFFEKFP  572 (679)
T ss_dssp             ----SSTTHHHHHHHHHHHHHHHTCCSH-HHHHHHHHHHHHST
T ss_pred             ----CCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCC
Confidence                222244566777788888899999 89999999887653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.06  E-value=9.6e-10  Score=78.32  Aligned_cols=87  Identities=11%  Similarity=0.122  Sum_probs=75.5

Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchh----------HHHHHHHHHHHHHHHhcCCCC
Q 016114           28 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK----------KAVEIYHRVITILELNRGTES   97 (395)
Q Consensus        28 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~   97 (395)
                      .+.+.|++|+..+++++++        .|..+.++.++|.++...++++          +|+..|++++++        .
T Consensus        13 ~r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------d   76 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------D   76 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred             HHHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------C
Confidence            3567899999999999987        3455678999999999998764          999999999998        6


Q ss_pred             hhhhhhHHhHHHHHHHcC-----------ChHHHHHHHHHHHHH
Q 016114           98 ADLVLPLFSLGSLFIKEG-----------KAVDAESVFSRILKI  130 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al~~  130 (395)
                      |....+++++|.+|...|           ++++|+.+|++|+++
T Consensus        77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            788899999999999885           899999999999998

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.03  E-value=1e-08  Score=91.08  Aligned_cols=177  Identities=10%  Similarity=0.025  Sum_probs=143.3

Q ss_pred             hhhcH-HHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCc----------hhHHHHHHHHHHHHHHHhcCCCC
Q 016114           29 TLENY-EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR----------AKKAVEIYHRVITILELNRGTES   97 (395)
Q Consensus        29 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~   97 (395)
                      ..|++ ++|+..+.+++.+        .|....+++..+.++...|+          +++++..+.+++..        +
T Consensus        40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~  103 (567)
T 1dce_A           40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------N  103 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred             HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------C
Confidence            44444 5779999999886        34556788889999999888          89999999999886        6


Q ss_pred             hhhhhhHHhHHHHHHHcC--ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Q 016114           98 ADLVLPLFSLGSLFIKEG--KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRVIK  174 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~  174 (395)
                      |....++...+.++...+  ++++++..+.++++.        +|....++...+.+....| .++++++++.++++.  
T Consensus       104 pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--  173 (567)
T 1dce_A          104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--  173 (567)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred             CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence            788899999999999999  679999999999987        5666788999999999999 899999999998873  


Q ss_pred             hcccCCCCchHHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH
Q 016114          175 DSNYMSLDDSIMENMRIDLAELLHIV--------------GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  240 (395)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  240 (395)
                           .+..   ..++...+.++...              +.++++++++.+++.+        .|....+|+.++.++.
T Consensus       174 -----~p~n---~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~  237 (567)
T 1dce_A          174 -----NFSN---YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLG  237 (567)
T ss_dssp             -----TCCC---HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHS
T ss_pred             -----CCCC---ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHh
Confidence                 2222   45678888888775              5578899999999876        3444567888888888


Q ss_pred             hhhcHHH
Q 016114          241 RSKNFVE  247 (395)
Q Consensus       241 ~~~~~~~  247 (395)
                      ..+++++
T Consensus       238 ~~~~~~~  244 (567)
T 1dce_A          238 RAEPHDV  244 (567)
T ss_dssp             CCCCCSC
T ss_pred             cCCCccc
Confidence            8777544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.02  E-value=3e-09  Score=75.81  Aligned_cols=87  Identities=15%  Similarity=0.033  Sum_probs=74.8

Q ss_pred             HcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcH----------HHHHHHHHHHHHHHHHhhCCCCc
Q 016114          199 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF----------VEAERLLRICLDIMTKTVGPDDQ  268 (395)
Q Consensus       199 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~  268 (395)
                      +.+.+++|+..+++++++        .|....++.++|.++...+++          ++|+..|++++.+        +|
T Consensus        14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP   77 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP   77 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred             HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence            456789999999999886        466678899999999999876          5999999999885        57


Q ss_pred             chHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHHH
Q 016114          269 SISFPMLHLGITLYHLN-----------RDKEAEKLVLEALYIR  301 (395)
Q Consensus       269 ~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~  301 (395)
                      ....+++++|.+|..+|           ++++|+.+|++|+++.
T Consensus        78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            78889999999999885           8999999999999864

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.98  E-value=5.4e-09  Score=68.53  Aligned_cols=88  Identities=16%  Similarity=0.271  Sum_probs=73.2

Q ss_pred             CcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 016114           12 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL   91 (395)
Q Consensus        12 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   91 (395)
                      ++|..+.+++.+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+..+++++.+   
T Consensus         4 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---   72 (91)
T 1na3_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---   72 (91)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             cccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence            345677889999999999999999999999999862        223467889999999999999999999999987   


Q ss_pred             hcCCCChhhhhhHHhHHHHHHHcC
Q 016114           92 NRGTESADLVLPLFSLGSLFIKEG  115 (395)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~~~~~~g  115 (395)
                           .|....++..+|.++...|
T Consensus        73 -----~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 -----DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHC
T ss_pred             -----CCCCHHHHHHHHHHHHhcC
Confidence                 4556778888998887654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.97  E-value=8.6e-09  Score=67.52  Aligned_cols=86  Identities=19%  Similarity=0.301  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHh
Q 016114           56 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  135 (395)
Q Consensus        56 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  135 (395)
                      +....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++.+     
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----   72 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----   72 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            355678899999999999999999999999986        3555678999999999999999999999999986     


Q ss_pred             CCCChhHHHHHHHHHHHHHHCC
Q 016114          136 GENDGRVGMAMCSLAHAKCANG  157 (395)
Q Consensus       136 ~~~~~~~~~~~~~la~~~~~~g  157 (395)
                         .|....++.++|.++...|
T Consensus        73 ---~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 ---DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHC
T ss_pred             ---CCCCHHHHHHHHHHHHhcC
Confidence               3444567888888877654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.93  E-value=4.9e-10  Score=76.76  Aligned_cols=96  Identities=18%  Similarity=0.098  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114           59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      +..+..+|.++...|++++|+..|++++.+        .|....++.++|.++...|++++|+..+++++.+.     ++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~   70 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----ST   70 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----SS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence            456888999999999999999999999987        45567889999999999999999999999999762     22


Q ss_pred             C---hhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 016114          139 D---GRVGMAMCSLAHAKCANGNAEEAVELYK  167 (395)
Q Consensus       139 ~---~~~~~~~~~la~~~~~~g~~~~A~~~~~  167 (395)
                      +   .....++..+|.++...|++++|+..++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           71 AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            2   1136678889999988887776655443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.92  E-value=2.6e-09  Score=73.12  Aligned_cols=101  Identities=11%  Similarity=0.019  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCC
Q 016114          271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS  350 (395)
Q Consensus       271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  350 (395)
                      ...+..+|.++...|++++|+..|++++++.     +++   ..++..+|.++...|+++ +|+..+++++.+....  .
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~p~~--~   72 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-----PQN---PVGYSNKAMALIKLGEYT-QAIQMCQQGLRYTSTA--E   72 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCHH-HHHHHHHHHHTSCSST--T
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHHhcCHH-HHHHHHHHHHHhCCCc--c
Confidence            4578899999999999999999999999863     333   457889999999999999 9999999999753210  0


Q ss_pred             CCHHHHHHHHHHHHHHHHhcchhhhchhhHHH
Q 016114          351 ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL  382 (395)
Q Consensus       351 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  382 (395)
                      .......++..+|.++...|++++|+..+++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence            11223678899999999999999999887653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.88  E-value=3.1e-08  Score=68.18  Aligned_cols=84  Identities=17%  Similarity=0.206  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 016114           76 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  155 (395)
Q Consensus        76 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  155 (395)
                      .+|+..|++++..        .|....++..+|.++...|++++|+..+++++..        .|....++..+|.++..
T Consensus         2 ~~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~   65 (115)
T 2kat_A            2 QAITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQG   65 (115)
T ss_dssp             CCHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHH
Confidence            3567778777764        4566789999999999999999999999999987        34556788999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHh
Q 016114          156 NGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus       156 ~g~~~~A~~~~~~a~~~~~~  175 (395)
                      .|++++|+..|++++++...
T Consensus        66 ~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           66 QGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             HTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhccc
Confidence            99999999999999998654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.86  E-value=6.6e-08  Score=68.82  Aligned_cols=111  Identities=17%  Similarity=0.216  Sum_probs=92.9

Q ss_pred             hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHH
Q 016114           30 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  109 (395)
Q Consensus        30 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  109 (395)
                      .+++++|+.+|+++.+.     +  ++.   +.  +|.+|...+..++|+.+|+++.+.          ..+.+.+++|.
T Consensus         8 ~~d~~~A~~~~~~aa~~-----g--~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~   65 (138)
T 1klx_A            8 KKDLKKAIQYYVKACEL-----N--EMF---GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGD   65 (138)
T ss_dssp             HHHHHHHHHHHHHHHHT-----T--CTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcC-----C--CHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHH
Confidence            46899999999999864     2  221   22  899999999999999999999764          34578999999


Q ss_pred             HHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 016114          110 LFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRV  172 (395)
Q Consensus       110 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~  172 (395)
                      +|..    .+++++|..+|+++.+.       .+   ..++.++|.+|..    .+++++|+.+|+++.+.
T Consensus        66 ~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           66 FYENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHcC-------CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            9998    89999999999999864       22   4678999999999    89999999999999874

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.85  E-value=4.9e-08  Score=65.12  Aligned_cols=71  Identities=14%  Similarity=0.250  Sum_probs=62.0

Q ss_pred             ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114           97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      +|....+++.+|.++...|++++|+..|++++++        .|....++..+|.+|...|++++|+..+++++++...
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            4667788999999999999999999999999987        3444568999999999999999999999999998654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.84  E-value=7.3e-08  Score=66.25  Aligned_cols=84  Identities=25%  Similarity=0.196  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh
Q 016114          204 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH  283 (395)
Q Consensus       204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  283 (395)
                      ++|+..|++++..        .|....++..+|.++...|++++|+..+++++.+        .|....++..+|.++..
T Consensus         2 ~~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~   65 (115)
T 2kat_A            2 QAITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQG   65 (115)
T ss_dssp             CCHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHH
Confidence            3577778877763        3445678999999999999999999999999984        45667789999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHH
Q 016114          284 LNRDKEAEKLVLEALYIREI  303 (395)
Q Consensus       284 ~g~~~~A~~~~~~al~~~~~  303 (395)
                      .|++++|+..|++++.+...
T Consensus        66 ~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           66 QGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             HTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhccc
Confidence            99999999999999987644

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.83  E-value=5.2e-08  Score=69.32  Aligned_cols=110  Identities=9%  Similarity=-0.011  Sum_probs=90.4

Q ss_pred             CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 016114          201 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT  280 (395)
Q Consensus       201 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  280 (395)
                      +++++|+.+|+++.+.       .++..   .  +|.+|...+..++|+.+|+++.+.          ....++.+||.+
T Consensus         9 ~d~~~A~~~~~~aa~~-------g~~~a---~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~   66 (138)
T 1klx_A            9 KDLKKAIQYYVKACEL-------NEMFG---C--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF   66 (138)
T ss_dssp             HHHHHHHHHHHHHHHT-------TCTTH---H--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcC-------CCHhh---h--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHH
Confidence            4678999999998764       23322   2  999999999999999999999872          345688999999


Q ss_pred             HHh----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----cCCchhHHHHHHHHHHHH
Q 016114          281 LYH----LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR----LGEDDTKLLELLKRVLRI  343 (395)
Q Consensus       281 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~  343 (395)
                      |..    .+++++|+.+|+++.+.       .+   ..+...||.+|..    .++++ +|+.+|+++.+.
T Consensus        67 y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~-~A~~~~~~Aa~~  126 (138)
T 1klx_A           67 YENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEK-QAVKTFEKACRL  126 (138)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHT
T ss_pred             HHcCCCCCccHHHHHHHHHHHHcC-------CC---HHHHHHHHHHHHCCCCCCcCHH-HHHHHHHHHHHC
Confidence            998    89999999999999762       23   3468899999999    88888 999999999873

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.81  E-value=5.6e-08  Score=64.85  Aligned_cols=70  Identities=19%  Similarity=0.144  Sum_probs=61.8

Q ss_pred             hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 016114          226 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  303 (395)
Q Consensus       226 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  303 (395)
                      |....++..+|.++...|++++|+..|++++++        .|....++..+|.++...|++++|+..+++++++...
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            455678899999999999999999999999984        4566678999999999999999999999999998754

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.70  E-value=2.8e-06  Score=74.38  Aligned_cols=166  Identities=10%  Similarity=0.004  Sum_probs=121.7

Q ss_pred             HHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHH
Q 016114          104 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN---------AEEAVELYKKALRVIK  174 (395)
Q Consensus       104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~a~~~~~  174 (395)
                      +..+-..+.+.|++++|..+|+++.+.     | -.|+ ..+++.+-.++...+.         .++|..+|++....  
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~-----G-v~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~--   99 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRN-----G-VQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD--   99 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHH-----T-CCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--
Confidence            455567788999999999999998764     1 1233 3456666666655443         67888888876652  


Q ss_pred             hcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 016114          175 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  254 (395)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  254 (395)
                         ...|+    ..+++.+...|.+.|++++|..++++....     | -.| ...+++.+...|.+.|+.++|.+++++
T Consensus       100 ---G~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g-~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A          100 ---KVVPN----EATFTNGARLAVAKDDPEMAFDMVKQMKAF-----G-IQP-RLRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             ---TCCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T-CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-ccceehHHHHHHHHCCCHHHHHHHHHH
Confidence               12222    235678889999999999999999886542     1 123 345688888999999999999999998


Q ss_pred             HHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 016114          255 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  299 (395)
Q Consensus       255 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  299 (395)
                      ..+.      .-.| ...++..|...+.+.|+.++|.+++++..+
T Consensus       166 M~~~------G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          166 MVES------EVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHT------TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhc------CCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            7651      2233 345788899999999999999999988754

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.67  E-value=1.2e-06  Score=76.74  Aligned_cols=167  Identities=13%  Similarity=-0.004  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh---------hhcHHHHHHHHHHHHHHHH
Q 016114          190 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR---------SKNFVEAERLLRICLDIMT  260 (395)
Q Consensus       190 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~~~~~~A~~~~~~a~~~~~  260 (395)
                      +..+-..+.+.|++++|+.+|++..+.     | -.|+ ..+++.+-.++..         .+..++|.++|++....  
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~-----G-v~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~--   99 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRN-----G-VQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD--   99 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHH-----T-CCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--
Confidence            355567888999999999999987653     1 1222 3355556555543         34578888888876541  


Q ss_pred             HhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q 016114          261 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV  340 (395)
Q Consensus       261 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a  340 (395)
                          .-.| ...++..+...|.+.|++++|..++++..+.      .-.|+ ..++..+-..+.+.|+.+ +|.++|++.
T Consensus       100 ----G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------g~~Pd-~~tyn~lI~~~~~~g~~~-~A~~l~~~M  166 (501)
T 4g26_A          100 ----KVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF------GIQPR-LRSYGPALFGFCRKGDAD-KAYEVDAHM  166 (501)
T ss_dssp             ----TCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCCCC-HHHHHHHHHHHHHTTCHH-HHHHHHHHH
T ss_pred             ----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCc-cceehHHHHHHHHCCCHH-HHHHHHHHH
Confidence                1223 3457888999999999999999999887542      11222 356888889999999999 999999987


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHH
Q 016114          341 LRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  385 (395)
Q Consensus       341 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  385 (395)
                      .+.   -   -.|+ ..++..|...|.+.|+.++|..++++..+.
T Consensus       167 ~~~---G---~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          167 VES---E---VVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHT---T---CCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             Hhc---C---CCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            652   1   2222 457888999999999999999999987653

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.65  E-value=1.9e-05  Score=65.84  Aligned_cols=212  Identities=12%  Similarity=0.077  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHH-cCChHHHHHHHHHHHHHHHHHhCCC
Q 016114           60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      .+...+|..|...|++++-..++..........   .....+.....+-..+.. -+..+.-.+.+..+++.+..    +
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~----~   92 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ----E   92 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH----T
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH----H
Confidence            467789999999999999888887765443221   122333344444444433 34556667777777777654    2


Q ss_pred             ChhHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          139 DGRVGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       139 ~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                      ......  .-..+|.+|...|+|.+|...+.+..+-+++.    ++...+..++.....+|...+++.++...+.++...
T Consensus        93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~----dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~  168 (394)
T 3txn_A           93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL----DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT  168 (394)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS----SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            233333  34589999999999999999999999988753    456778888889999999999999999999999888


Q ss_pred             HHhhhCCCChh-HHHHHHHHHHHHH-hhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCCh
Q 016114          217 TEKYKGKEHPS-FVTHLLNLAASYS-RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD  287 (395)
Q Consensus       217 ~~~~~~~~~~~-~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  287 (395)
                      .....  .+|. .+.....-|.++. ..++|.+|..+|-++..-+...   ..|....+...++.+-...++.
T Consensus       169 ~~ai~--~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~r  236 (394)
T 3txn_A          169 ANAIY--CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQS  236 (394)
T ss_dssp             HHHSC--CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTCG
T ss_pred             hccCC--CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCCH
Confidence            76542  3443 3444555677888 8999999999999987654322   2333334444455555555553

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.64  E-value=6.1e-05  Score=62.83  Aligned_cols=213  Identities=9%  Similarity=0.016  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh-CchhHHHHHHHHHHHHHHHhcCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI-GRAKKAVEIYHRVITILELNRGT   95 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~   95 (395)
                      -.+...+|..|...|++++-..++......+...   .....+.....+-..+... +..+.-.+.+..+++.++..   
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~---   92 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE---   92 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---
Confidence            3667899999999999999988887765554332   2334555555555555443 45566667777777766541   


Q ss_pred             CChhhhh--hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114           96 ESADLVL--PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus        96 ~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                       ......  .-..+|..|...|+|.+|...+.+....+++.  ++......++..-..+|...+++.++...+.++....
T Consensus        93 -~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~  169 (394)
T 3txn_A           93 -KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA  169 (394)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence             122222  44589999999999999999999999887663  3455678888889999999999999999999998887


Q ss_pred             HhcccCCCCchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhc
Q 016114          174 KDSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  244 (395)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  244 (395)
                      ...   .+++...+.....-|..+. ..++|.+|..+|-++..-+...   ..+....+...++.+-...++
T Consensus       170 ~ai---~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          170 NAI---YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HHS---CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccC---CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCC
Confidence            542   2555666777777788888 8999999999999987655432   234333333444444444444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.56  E-value=2.9e-07  Score=61.20  Aligned_cols=88  Identities=13%  Similarity=0.146  Sum_probs=67.9

Q ss_pred             HHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhh-hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 016114           63 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL-PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  141 (395)
Q Consensus        63 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  141 (395)
                      ...|..+...|++++|+..+++++..        .|.... ++..+|.++...|++++|+..|++++.+     .++++.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~   70 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSPA   70 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHH
Confidence            45688899999999999999999886        455566 8999999999999999999999999987     233332


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 016114          142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  174 (395)
Q Consensus       142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  174 (395)
                         ++.+        +.+.+++..|+++.....
T Consensus        71 ---~~~~--------~~~~~a~~~~~~~~~~~p   92 (99)
T 2kc7_A           71 ---LQAR--------KMVMDILNFYNKDMYNQL   92 (99)
T ss_dssp             ---HHHH--------HHHHHHHHHHCCTTHHHH
T ss_pred             ---HHHH--------HHHHHHHHHHHHHhccCc
Confidence               2221        556777777777766543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.55  E-value=1.2e-06  Score=58.66  Aligned_cols=82  Identities=15%  Similarity=0.125  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   97 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   97 (395)
                      .-++.+|..++..|+|..|+.+|++|++....... ..+....++..+|.++...|++++|+.++++++.+        .
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~   76 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------D   76 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------C
Confidence            44689999999999999999999999988654311 12345678899999999999999999999999987        3


Q ss_pred             hhhhhhHHhHH
Q 016114           98 ADLVLPLFSLG  108 (395)
Q Consensus        98 ~~~~~~~~~l~  108 (395)
                      |....+..+++
T Consensus        77 P~~~~~~~n~~   87 (104)
T 2v5f_A           77 PEHQRANGNLK   87 (104)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHhhHH
Confidence            44444555554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.53  E-value=0.00024  Score=62.17  Aligned_cols=213  Identities=10%  Similarity=0.041  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Q 016114          118 VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL  197 (395)
Q Consensus       118 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~  197 (395)
                      ......|++++..+        |.....+...+..+...|+.++|...|++|+.. .       ....+   +...+.. 
T Consensus       196 ~Rv~~~ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-------~~~~l---~~~y~~~-  255 (493)
T 2uy1_A          196 SRMHFIHNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-------DGMFL---SLYYGLV-  255 (493)
T ss_dssp             HHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-------CSSHH---HHHHHHH-
T ss_pred             HHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-------CcHHH---HHHHHhh-
Confidence            34566788877652        333566778888899999999999999999985 2       22221   1111211 


Q ss_pred             HHcCChHHHHHHHHHHHHHHHhhh---C--CCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHH
Q 016114          198 HIVGRGQEGRELLEECLLITEKYK---G--KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF  272 (395)
Q Consensus       198 ~~~g~~~~A~~~~~~al~~~~~~~---~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  272 (395)
                         .+.++.   ++...+......   +  .........+...+....+.++.+.|...|+++ .    .  +  +....
T Consensus       256 ---~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~----~--~--~~~~~  320 (493)
T 2uy1_A          256 ---MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G----N--E--GVGPH  320 (493)
T ss_dssp             ---TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T----T--S--CCCHH
T ss_pred             ---cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h----C--C--CCChH
Confidence               111221   222222110000   0  011223456777778887888999999999988 3    1  1  12344


Q ss_pred             HHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCC
Q 016114          273 PMLHLGITLYHLN-RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE  351 (395)
Q Consensus       273 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  351 (395)
                      .+...|.+-...+ +.+.|...|+.+++..     ++.|..   +...+......|+.+ .|...|+++.         .
T Consensus       321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~~~---~~~yid~e~~~~~~~-~aR~l~er~~---------k  382 (493)
T 2uy1_A          321 VFIYCAFIEYYATGSRATPYNIFSSGLLKH-----PDSTLL---KEEFFLFLLRIGDEE-NARALFKRLE---------K  382 (493)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCHHH---HHHHHHHHHHHTCHH-HHHHHHHHSC---------C
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCHHH---HHHHHHHHHHcCCHH-HHHHHHHHHH---------H
Confidence            5555666666655 6999999999998853     444543   334566677888888 8888888862         2


Q ss_pred             CHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHH
Q 016114          352 SEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  386 (395)
Q Consensus       352 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  386 (395)
                      +   ...+......-...|+.+.+...++++....
T Consensus       383 ~---~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~  414 (493)
T 2uy1_A          383 T---SRMWDSMIEYEFMVGSMELFRELVDQKMDAI  414 (493)
T ss_dssp             B---HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            2   3445555556666788888888888887643

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.50  E-value=3.1e-07  Score=61.02  Aligned_cols=87  Identities=11%  Similarity=0.104  Sum_probs=67.1

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHH-HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT-SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      +..|..+...|++++|+..|+++++..     +   .... ++..+|.++...|++++|+..|++++.+        .|.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~-----p---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   67 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTE-----P---VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD   67 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC-----S---STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC-----C---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence            567899999999999999999999862     2   2345 7889999999999999999999999987        333


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  131 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  131 (395)
                      ...++..        +.+.++...|+++....
T Consensus        68 ~~~~~~~--------~~~~~a~~~~~~~~~~~   91 (99)
T 2kc7_A           68 SPALQAR--------KMVMDILNFYNKDMYNQ   91 (99)
T ss_dssp             STHHHHH--------HHHHHHHHHHCCTTHHH
T ss_pred             cHHHHHH--------HHHHHHHHHHHHHhccC
Confidence            3333322        45667777777766553

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.46  E-value=4.2e-06  Score=55.98  Aligned_cols=70  Identities=11%  Similarity=0.034  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                      .-++.+|..++..|+|..|+.++++|++.....   .........++..+|.++...|++++|+.++++++.+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~---~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEG---EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhcc---CCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            456789999999999999999999999987542   1112344577899999999999999999999999986

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.46  E-value=2e-05  Score=64.59  Aligned_cols=133  Identities=12%  Similarity=0.040  Sum_probs=91.3

Q ss_pred             HHHHHHHHh---hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh---C-chhHHHHHHHHHHHHHHHhc
Q 016114           21 LHMGSMYST---LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---G-RAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        21 ~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~al~~~~~~~   93 (395)
                      +..|..+..   ..++.+|+.+|++|+++        +|..+.++..++.++...   + ..........+++.....  
T Consensus       200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a--  269 (372)
T 3ly7_A          200 FYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT--  269 (372)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh--
Confidence            344555554   35568999999999987        344445555555555422   1 111222233333332211  


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      ....|..+.++..++..+...|++++|+..+++++.+       + +. ..++..+|.++...|++++|++.|.+|+.+
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-------n-~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-------E-MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------C-CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-------C-CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            1234666778888888888899999999999999998       1 33 456788999999999999999999999986

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.27  E-value=1.7e-05  Score=51.42  Aligned_cols=68  Identities=13%  Similarity=0.103  Sum_probs=58.8

Q ss_pred             ChhhhhhHHhHHHHHHHcCC---hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114           97 SADLVLPLFSLGSLFIKEGK---AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      .|..+..+..+|.+++..++   .++|...+++++.+        +|....++..+|..++..|+|++|+.+++++++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34556788888999877666   79999999999997        6777788999999999999999999999999874

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.24  E-value=1.8e-05  Score=62.06  Aligned_cols=100  Identities=16%  Similarity=0.091  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHh-----hC------chhHHHHHHHHHHHHHHHhcCCCChh--hhhhHHhHHHHHHHc-----CChH
Q 016114           57 LLVTSLLGMAKVLGS-----IG------RAKKAVEIYHRVITILELNRGTESAD--LVLPLFSLGSLFIKE-----GKAV  118 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~-----~g------~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~  118 (395)
                      ..+..++..|..+..     .|      ....|...+++++++        +|.  ...++..+|.+|...     |+.+
T Consensus       150 ~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~e  221 (301)
T 3u64_A          150 VDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGME  221 (301)
T ss_dssp             GGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHH
T ss_pred             cccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHH
Confidence            345556666555432     12      356777888888887        444  567999999999995     9999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
Q 016114          119 DAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCA-NGNAEEAVELYKKALRV  172 (395)
Q Consensus       119 ~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~  172 (395)
                      +|..+|++++++        +|. ...++...|..+.. .|++++|..++++++..
T Consensus       222 kA~~~ferAL~L--------nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          222 KAHTAFEHLTRY--------CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHHHHHHHH--------CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh--------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            999999999998        333 25667788888887 59999999999999985

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.22  E-value=0.00011  Score=52.12  Aligned_cols=128  Identities=15%  Similarity=0.035  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCC
Q 016114          144 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  223 (395)
Q Consensus       144 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  223 (395)
                      .++..-.......|.|+.|+.....++.+..... ....+.....++..+|..++..|+|..|...|++++...+.....
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~-~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP-ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3455566777899999999999999988876431 111345566788899999999999999999999999987643211


Q ss_pred             -----------------CChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 016114          224 -----------------EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL  281 (395)
Q Consensus       224 -----------------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  281 (395)
                                       +.+......+.++.||.+.+++++|+..++..         +....+..+...||.+|
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHC
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHh
Confidence                             11223467788999999999999999987643         12234455556677665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.20  E-value=3.6e-05  Score=63.08  Aligned_cols=132  Identities=8%  Similarity=0.027  Sum_probs=91.8

Q ss_pred             HHHHHHHhh---CchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHc---C-ChHHHHHHHHHHHHHHHHHhC
Q 016114           64 GMAKVLGSI---GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE---G-KAVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        64 ~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~al~~~~~~~~  136 (395)
                      ..|..+...   ..+.+|+.+|++++++        +|..+.++..++.+|...   + .......-+.+++.....  .
T Consensus       201 Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a--~  270 (372)
T 3ly7_A          201 YQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT--L  270 (372)
T ss_dssp             HHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--C
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh--c
Confidence            334545444   4468999999999997        677777777777776532   1 111222333334432211  1


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                      ...+..+.++..++..+...|++++|+..+++|+.+.       ++    ...+..+|.++...|++++|++.|.+|+.+
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-------~s----~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-------MS----WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            2234555677788888888899999999999999962       22    345578899999999999999999999987

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.20  E-value=1.4e-05  Score=51.89  Aligned_cols=64  Identities=11%  Similarity=0.060  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHhhCc---hhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           59 VTSLLGMAKVLGSIGR---AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        59 ~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      ...+..+|.+++..++   .++|...+++++.+        +|....++..+|..++..|+|++|+.+++++++.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4567778888876655   79999999999997        7888899999999999999999999999999875

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.18  E-value=0.0001  Score=52.27  Aligned_cols=109  Identities=10%  Similarity=-0.021  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCc-ChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC-
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT-   95 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-   95 (395)
                      .++..-....+..|.|+.|+.....++.+....... .......++..+|..++..|+|..|...|++++...+.+... 
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            445667777889999999999999988886553221 233678889999999999999999999999999987643211 


Q ss_pred             ----------------CChhhhhhHHhHHHHHHHcCChHHHHHHHHH
Q 016114           96 ----------------ESADLVLPLFSLGSLFIKEGKAVDAESVFSR  126 (395)
Q Consensus        96 ----------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  126 (395)
                                      +.+...++.+.++.||...+++++|+..++.
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                            1122236778999999999999999988764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.17  E-value=0.0011  Score=52.24  Aligned_cols=85  Identities=13%  Similarity=-0.076  Sum_probs=67.8

Q ss_pred             cHHHHHHHHHHHHHHHHHhhCCCCcc--hHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 016114          244 NFVEAERLLRICLDIMTKTVGPDDQS--ISFPMLHLGITLYHL-----NRDKEAEKLVLEALYIREIAFGKDSLPVGEAL  316 (395)
Q Consensus       244 ~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  316 (395)
                      ....|...+++++++        +|.  ...++..+|.+|...     |+.++|..+|++++++.     ++.  ...+.
T Consensus       178 ~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-----P~~--~id~~  242 (301)
T 3u64_A          178 TVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-----SAH--DPDHH  242 (301)
T ss_dssp             HHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-----CTT--CSHHH
T ss_pred             hHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-----CCC--CchHH
Confidence            457888888888885        344  566899999999995     99999999999999975     332  13457


Q ss_pred             HHHHHHHHHc-CCchhHHHHHHHHHHHHH
Q 016114          317 DCLVSIQTRL-GEDDTKLLELLKRVLRIQ  344 (395)
Q Consensus       317 ~~l~~~~~~~-~~~~~~A~~~~~~al~~~  344 (395)
                      ...|..+... |+++ +|..++++++..-
T Consensus       243 v~YA~~l~~~~gd~~-~a~~~L~kAL~a~  270 (301)
T 3u64_A          243 ITYADALCIPLNNRA-GFDEALDRALAID  270 (301)
T ss_dssp             HHHHHHTTTTTTCHH-HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcCCHH-HHHHHHHHHHcCC
Confidence            7888888874 8888 9999999999853

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.09  E-value=9.5e-05  Score=52.10  Aligned_cols=68  Identities=21%  Similarity=0.117  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHhhCCCCc-chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          227 SFVTHLLNLAASYSRSK---NFVEAERLLRICLDIMTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       227 ~~~~~~~~la~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      ....+.+++|.++.+.+   +.++++.+++..++.       +.| ....++++||..+.+.|+|++|..++++++++.
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie  101 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE  101 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            35578889999999977   777999999998873       234 567899999999999999999999999999865

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.08  E-value=0.0046  Score=54.15  Aligned_cols=216  Identities=12%  Similarity=0.042  Sum_probs=133.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 016114           76 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  155 (395)
Q Consensus        76 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  155 (395)
                      ......|++++..        .|.....+...+..+...|+.++|...|++++..      |.+...   +...+.. ..
T Consensus       196 ~Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~------P~~~~l---~~~y~~~-~e  257 (493)
T 2uy1_A          196 SRMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM------SDGMFL---SLYYGLV-MD  257 (493)
T ss_dssp             HHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSHH---HHHHHHH-TT
T ss_pred             HHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCcHHH---HHHHHhh-cc
Confidence            3456678887765        2444677888899999999999999999999976      222222   1111211 11


Q ss_pred             CCCHHHHHHHHHHHHHHH---HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHH
Q 016114          156 NGNAEEAVELYKKALRVI---KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL  232 (395)
Q Consensus       156 ~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  232 (395)
                      .+   +.   +++..+..   ...............++...+....+.++.+.|...|+++ ..    .  .  .....+
T Consensus       258 ~~---~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~----~--~--~~~~v~  322 (493)
T 2uy1_A          258 EE---AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN----E--G--VGPHVF  322 (493)
T ss_dssp             CT---HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT----S--C--CCHHHH
T ss_pred             hh---HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC----C--C--CChHHH
Confidence            11   11   22222211   0000000012223456677777777888999999999988 21    1  1  123345


Q ss_pred             HHHHHHHHhhh-cHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH
Q 016114          233 LNLAASYSRSK-NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP  311 (395)
Q Consensus       233 ~~la~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  311 (395)
                      ...|.+....+ +.+.|..+|+.++..+     ++.|   ..+...+......|+.+.|..+|+++.         .+. 
T Consensus       323 i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~---~~~~~yid~e~~~~~~~~aR~l~er~~---------k~~-  384 (493)
T 2uy1_A          323 IYCAFIEYYATGSRATPYNIFSSGLLKH-----PDST---LLKEEFFLFLLRIGDEENARALFKRLE---------KTS-  384 (493)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHHTCHHHHHHHHHHSC---------CBH-
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH---------HHH-
Confidence            55566666666 5999999999998842     2333   334456677788999999999998872         222 


Q ss_pred             HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 016114          312 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE  345 (395)
Q Consensus       312 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~  345 (395)
                        ..+......-...|+.+ .+...++++++...
T Consensus       385 --~lw~~~~~fE~~~G~~~-~~r~v~~~~~~~~~  415 (493)
T 2uy1_A          385 --RMWDSMIEYEFMVGSME-LFRELVDQKMDAIK  415 (493)
T ss_dssp             --HHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHCCCHH-HHHHHHHHHHHHhc
Confidence              33445555566679887 88889999988665

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.07  E-value=0.00034  Score=49.34  Aligned_cols=93  Identities=14%  Similarity=0.072  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHH
Q 016114          245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN---RDKEAEKLVLEALYIREIAFGKDSL-PVGEALDCLV  320 (395)
Q Consensus       245 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~  320 (395)
                      ...+.+.|.+.+.        ..+....+.+++|.++.+.+   +.++++.+++..++.       +.| ...+.++.||
T Consensus        14 l~~~~~~y~~e~~--------~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LA   78 (152)
T 1pc2_A           14 LLKFEKKFQSEKA--------AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLA   78 (152)
T ss_dssp             HHHHHHHHHHHHH--------TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc--------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHH
Confidence            3444555555443        23356778899999999988   666899999888773       224 5577899999


Q ss_pred             HHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHH
Q 016114          321 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLT  358 (395)
Q Consensus       321 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  358 (395)
                      ..+.+.|+++ +|..++++++++     .|+++.....
T Consensus        79 v~~~kl~~Y~-~A~~y~~~lL~i-----eP~n~QA~~L  110 (152)
T 1pc2_A           79 VGNYRLKEYE-KALKYVRGLLQT-----EPQNNQAKEL  110 (152)
T ss_dssp             HHHHHTSCHH-HHHHHHHHHHHH-----CTTCHHHHHH
T ss_pred             HHHHHccCHH-HHHHHHHHHHhc-----CCCCHHHHHH
Confidence            9999999999 999999999986     3555544333

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.79  E-value=0.014  Score=50.23  Aligned_cols=216  Identities=11%  Similarity=-0.064  Sum_probs=129.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHH
Q 016114          115 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA  194 (395)
Q Consensus       115 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la  194 (395)
                      |++++|++.+....+..+  .+.+.+....+...+..++...|+++...+.+.-..   ++   .+........+...+-
T Consensus        30 ~~~~~a~e~ll~lEK~~r--~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls---kk---r~qlk~ai~~~V~~~~  101 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTR--QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS---KK---HGQLKLSIQYMIQKVM  101 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHS--SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH---TT---TTTSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhh--hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH---HH---hhhhHHHHHHHHHHHH
Confidence            567777765543332222  234556667788888999999999988766554321   11   1222222222211111


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHhhhC-CC--ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCC-Ccch
Q 016114          195 ELLHIVGRGQEGRELLEECLLITEKYKG-KE--HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD-DQSI  270 (395)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~  270 (395)
                      .........+..  .....+........ .-  ....+.....|+.++...|++.+|...+.....   +..+.. ....
T Consensus       102 ~~l~~~~~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~---Et~~~~~~~~k  176 (445)
T 4b4t_P          102 EYLKSSKSLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQV---ETYGSMEMSEK  176 (445)
T ss_dssp             HHHHHHCTTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCSSSCHHHH
T ss_pred             HHHhcCCchhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH---HHHhcccHHHH
Confidence            222222222221  11122222111111 11  122456667899999999999999999987653   333332 2344


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChH-HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh
Q 016114          271 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP-VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  346 (395)
Q Consensus       271 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~  346 (395)
                      ...+.....++...+++.+|...+.++.......  +.+|. ....+...|.++...+++. +|..+|..+...+..
T Consensus       177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~-~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYL-EVAQYLQEIYQTDAI  250 (445)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHhcccc
Confidence            6677788899999999999999999886544332  33444 3455677899999999999 999999998876544

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.019  Score=49.36  Aligned_cols=218  Identities=11%  Similarity=0.006  Sum_probs=132.0

Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHH
Q 016114           29 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG  108 (395)
Q Consensus        29 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  108 (395)
                      ..|+++.|++-+....+..+  .+.+.+....++..+..++...|+++...+.+.-..    +..+. .+..........
T Consensus        28 ~~~~~~~a~e~ll~lEK~~r--~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls----kkr~q-lk~ai~~~V~~~  100 (445)
T 4b4t_P           28 AQNDCNSALDQLLVLEKKTR--QASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS----KKHGQ-LKLSIQYMIQKV  100 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHS--SSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH----TTTTT-SHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHhh--hccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH----HHhhh-hHHHHHHHHHHH
Confidence            35888888876644333322  234445566777888889999999988766553221    11111 111111111111


Q ss_pred             HHHH-HcCChHHHHHHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCch
Q 016114          109 SLFI-KEGKAVDAESVFSRILKIYTKVYGEN---DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS  184 (395)
Q Consensus       109 ~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  184 (395)
                      .-+. .....+.  ......+..........   ....+.....|+.++...|++.+|...+.....-..    ...+..
T Consensus       101 ~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~----~~~~~~  174 (445)
T 4b4t_P          101 MEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY----GSMEMS  174 (445)
T ss_dssp             HHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----SSSCHH
T ss_pred             HHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH----hcccHH
Confidence            1111 1222211  11112222111111110   112456677899999999999999999998764332    234455


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChh-HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114          185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  261 (395)
Q Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  261 (395)
                      ....++.....++...+++.+|...++++........  .+|. ....+...|.++...++|.+|..+|.++......
T Consensus       175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~--~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP--KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI  250 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC--CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence            6677888899999999999999999998755433322  3333 4556678899999999999999999998875443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.44  E-value=0.0075  Score=41.95  Aligned_cols=110  Identities=11%  Similarity=0.114  Sum_probs=80.8

Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhhcH------HHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHH
Q 016114            9 LKDDEPLLDAILLHMGSMYSTLENY------EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY   82 (395)
Q Consensus         9 l~~~~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~   82 (395)
                      +.+.+|+....|..+   ....|+.      ++-++.|++|+...+..........+..+...|.. ...++.++|...|
T Consensus         8 ~~p~~yd~W~~yl~l---lE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy   83 (161)
T 4h7y_A            8 MMANNPEDWLSLLLK---LEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYF   83 (161)
T ss_dssp             --CCSHHHHHHHHHH---HHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHH
T ss_pred             eCCCCHHHHHHHHHH---HHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHH
Confidence            456677665554444   3344777      88888999988765433222334667777777755 5669999999999


Q ss_pred             HHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           83 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        83 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      +.++.+        +...+.++...|..-.++|+...|.+.+.+++.+
T Consensus        84 ~~a~~~--------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A           84 QMARAN--------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             HHHHHH--------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHH--------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence            999986        2334888889999999999999999999999986

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.42  E-value=0.00071  Score=45.81  Aligned_cols=76  Identities=12%  Similarity=-0.037  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHHh
Q 016114          313 GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE-EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  391 (395)
Q Consensus       313 ~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  391 (395)
                      ..+.+.+|.++.+..+..     ..++.+.+.+.++....| ...+.++.||..+.+.|+|++|..+++..+++.|...+
T Consensus        35 ~~~~F~yAw~Lv~S~~~~-----d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q  109 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYND-----DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  109 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHH-----HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence            456789999999887665     345666666666666546 67889999999999999999999999999999887665


Q ss_pred             hh
Q 016114          392 KV  393 (395)
Q Consensus       392 ~~  393 (395)
                      +.
T Consensus       110 A~  111 (126)
T 1nzn_A          110 AK  111 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.34  E-value=0.012  Score=40.90  Aligned_cols=101  Identities=11%  Similarity=0.028  Sum_probs=76.3

Q ss_pred             HHHHHHHHHcCCh------HHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhC
Q 016114          191 IDLAELLHIVGRG------QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  264 (395)
Q Consensus       191 ~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  264 (395)
                      ..........|+.      ++-++.|++|+..............+..+...|.. ...++.++|.+.|+.++.+      
T Consensus        17 ~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~------   89 (161)
T 4h7y_A           17 LSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN------   89 (161)
T ss_dssp             HHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH------
T ss_pred             HHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH------
Confidence            3444555556887      77778888887764332223445567777777765 5669999999999999884      


Q ss_pred             CCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114          265 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  300 (395)
Q Consensus       265 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  300 (395)
                        +...+.++...|..-.++|+...|.+.+.+++.+
T Consensus        90 --hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A           90 --CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             --CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             --hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence              3334889999999999999999999999999884

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.86  E-value=0.019  Score=49.12  Aligned_cols=110  Identities=15%  Similarity=0.092  Sum_probs=88.8

Q ss_pred             hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc
Q 016114           98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  177 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  177 (395)
                      .....++..+|..|...|++++|.+.|.++...+.     ........+..+..++...+++..+..++.++......  
T Consensus       128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-----~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~--  200 (429)
T 4b4t_R          128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI-----STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK--  200 (429)
T ss_dssp             CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc--
Confidence            34567888999999999999999999999877642     23456678888889999999999999999999877653  


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          178 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                        ++++..........|.++...++|.+|-..|-.+...
T Consensus       201 --~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          201 --GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             --CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence              3455555566667788888999999999999887654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.78  E-value=0.013  Score=50.20  Aligned_cols=106  Identities=18%  Similarity=0.137  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCC
Q 016114          188 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD  267 (395)
Q Consensus       188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  267 (395)
                      .++..+|..|...|++++|.+.|.++.....     ........+..+..++...+++..+..++.++.......  ++.
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-----~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~--~d~  204 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAI-----STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG--GDW  204 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--CCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--CCH
Confidence            4557899999999999999999999776542     223466778888899999999999999999987754432  222


Q ss_pred             cchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114          268 QSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  300 (395)
Q Consensus       268 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  300 (395)
                      ..........|.++...++|.+|..+|-.+...
T Consensus       205 ~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          205 ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            223344556677888899999999999877653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.65  E-value=0.0017  Score=44.08  Aligned_cols=74  Identities=11%  Similarity=-0.090  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHcCCchh--HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          313 GEALDCLVSIQTRLGEDDT--KLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       313 ~~~~~~l~~~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                      ..+.+++|.++.+..+...  +++.+++..+.       .......+.++.||..+.+.|+|++|..+.+..+++.|...
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~  112 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  112 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence            3567889999988876541  45555544443       23235678999999999999999999999999998877766


Q ss_pred             hhh
Q 016114          391 QKV  393 (395)
Q Consensus       391 ~~~  393 (395)
                      ++.
T Consensus       113 QA~  115 (134)
T 3o48_A          113 QVG  115 (134)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.49  E-value=0.043  Score=51.50  Aligned_cols=105  Identities=11%  Similarity=-0.006  Sum_probs=79.6

Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q 016114          184 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  263 (395)
Q Consensus       184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  263 (395)
                      ......++.+-..|.+.|+.++|..++.+..+...+-.   .|+ ..+|+.|...|.+.|++++|.++|++....     
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-----  194 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA-----  194 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----
Confidence            34455678899999999999999999987654432222   232 457889999999999999999999988651     


Q ss_pred             CCCCcchHHHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 016114          264 GPDDQSISFPMLHLGITLYHLNRD-KEAEKLVLEALY  299 (395)
Q Consensus       264 ~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~  299 (395)
                       +-.|+ ..+|..+-.++.+.|+. ++|.+++++..+
T Consensus       195 -G~~PD-vvTYntLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          195 -GLTPD-LLSYAAALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             -TCCCC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             -CCCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence             23344 45788888889999985 788888887654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.46  E-value=0.07  Score=50.13  Aligned_cols=107  Identities=10%  Similarity=-0.056  Sum_probs=80.2

Q ss_pred             ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 016114          225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  304 (395)
Q Consensus       225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  304 (395)
                      ......+++.+...|++.|+.++|..+|.+......+-   -.|+ ..+|..|...|.+.|+.++|.++|++..+.    
T Consensus       123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG---~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----  194 (1134)
T 3spa_A          123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR---KLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA----  194 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH---TTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----
T ss_pred             HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC---CCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Confidence            34456678899999999999999999998765432222   1233 458899999999999999999999987652    


Q ss_pred             cCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 016114          305 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  342 (395)
Q Consensus       305 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~  342 (395)
                        .-.|+ ..+|..+-..+.+.|+..++|.+++++..+
T Consensus       195 --G~~PD-vvTYntLI~glcK~G~~~e~A~~Ll~EM~~  229 (1134)
T 3spa_A          195 --GLTPD-LLSYAAALQCMGRQDQDAGTIERCLEQMSQ  229 (1134)
T ss_dssp             --TCCCC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             --CCCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence              12233 356788888899999863278888888765

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.40  E-value=0.12  Score=35.06  Aligned_cols=70  Identities=16%  Similarity=0.140  Sum_probs=53.8

Q ss_pred             chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114          269 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL-PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  343 (395)
Q Consensus       269 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  343 (395)
                      ....+.+++|+++.+..+...    .++.+.+....+..+.| ..-..++.||..+.+.|++. +|..+++..+++
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~-~A~~~~~~lL~~  103 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE-KALKYVRGLLQT  103 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHh
Confidence            456788999999999887665    23444444444444545 56788999999999999999 999999999986

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.39  E-value=0.0023  Score=44.13  Aligned_cols=74  Identities=11%  Similarity=-0.076  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHcCCch--hHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          312 VGEALDCLVSIQTRLGEDD--TKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       312 ~~~~~~~l~~~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      ...+.+++|.++.+..+..  .+++.+++..+.       .......+.++.||..+.+.|+|++|..+.+..+++.|..
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n  110 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN  110 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence            4467789999999887654  145555555443       2222457889999999999999999999999999887766


Q ss_pred             Hhh
Q 016114          390 KQK  392 (395)
Q Consensus       390 ~~~  392 (395)
                      .++
T Consensus       111 ~QA  113 (144)
T 1y8m_A          111 KQV  113 (144)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.27  E-value=0.068  Score=50.16  Aligned_cols=76  Identities=20%  Similarity=0.092  Sum_probs=51.9

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCCh
Q 016114          147 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  226 (395)
Q Consensus       147 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  226 (395)
                      ..+...+...|.+++|+...+..              ..       ........|++++|.+..+..          ++ 
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~--------------~~-------~f~~~l~~~~~~~A~~~~~~~----------~~-  680 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQ--------------DQ-------KFELALKVGQLTLARDLLTDE----------SA-  680 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCH--------------HH-------HHHHHHHHTCHHHHHHHHTTC----------CC-
T ss_pred             HHHHHHHHhCCChHHheecCCCc--------------ch-------heehhhhcCCHHHHHHHHHhh----------Cc-
Confidence            45566677888888877654321              11       122345678998888765321          12 


Q ss_pred             hHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 016114          227 SFVTHLLNLAASYSRSKNFVEAERLLRICL  256 (395)
Q Consensus       227 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  256 (395)
                        ...|..+|..+...++++.|+.+|.++-
T Consensus       681 --~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          681 --EMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             --HhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence              3568899999999999999999998763

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.05  E-value=0.15  Score=47.80  Aligned_cols=47  Identities=13%  Similarity=0.074  Sum_probs=34.1

Q ss_pred             HHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHH
Q 016114           69 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  128 (395)
Q Consensus        69 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  128 (395)
                      ....|++++|.+..+.             ......+..+|..+...|+++.|+.+|.++-
T Consensus       662 ~l~~~~~~~A~~~~~~-------------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTD-------------ESAEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHHTCHHHHHHHHTT-------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhhcCCHHHHHHHHHh-------------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            3456666666655321             1234578899999999999999999999863

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.80  E-value=0.36  Score=40.70  Aligned_cols=109  Identities=11%  Similarity=0.018  Sum_probs=81.2

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcCh--------------HHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114           23 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTS--------------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   88 (395)
Q Consensus        23 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   88 (395)
                      -|......|+.+.|...+.+|+.+++..+-++.              .....+...++..+...|++.+++..+..++..
T Consensus       121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~  200 (388)
T 2ff4_A          121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE  200 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            344444568899999999999987643211111              123445566778888999999999999988775


Q ss_pred             HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114           89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  139 (395)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  139 (395)
                              +|..-..+..+-.++...|+..+|+..|++.......-+|-+.
T Consensus       201 --------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P  243 (388)
T 2ff4_A          201 --------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  243 (388)
T ss_dssp             --------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence                    5666668888899999999999999999999988776666443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.68  E-value=0.63  Score=42.69  Aligned_cols=88  Identities=11%  Similarity=-0.001  Sum_probs=63.6

Q ss_pred             chhHHHHHHHHHHHHHHHhcC---CCC-------hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH
Q 016114           74 RAKKAVEIYHRVITILELNRG---TES-------ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  143 (395)
Q Consensus        74 ~~~~A~~~~~~al~~~~~~~~---~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  143 (395)
                      +--+|+....++++-......   ..+       +.....+...+..+...|+++-|+.+.++|+..        .|...
T Consensus       300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF  371 (754)
T 4gns_B          300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSF  371 (754)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCH
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------Cchhh
Confidence            445677777777654322111   111       112334555678888999999999999999987        46667


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 016114          144 MAMCSLAHAKCANGNAEEAVELYKKA  169 (395)
Q Consensus       144 ~~~~~la~~~~~~g~~~~A~~~~~~a  169 (395)
                      .+|..|+.+|..+|+|+.|+-.+..+
T Consensus       372 ~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          372 ESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            88999999999999999999887765

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.62  E-value=0.35  Score=40.73  Aligned_cols=105  Identities=12%  Similarity=-0.088  Sum_probs=77.1

Q ss_pred             HHHcCChHHHHHHHHHHHHHHHhhhCCC---C-----------hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q 016114          197 LHIVGRGQEGRELLEECLLITEKYKGKE---H-----------PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  262 (395)
Q Consensus       197 ~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  262 (395)
                      ....|+.+.|...+.+|+.+++...-++   .           .....+...++..+...|++.+++..+..++..    
T Consensus       125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~----  200 (388)
T 2ff4_A          125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE----  200 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence            3445778888888888877653211000   0           011234456678888999999999999888763    


Q ss_pred             hCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCC
Q 016114          263 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  309 (395)
Q Consensus       263 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  309 (395)
                          +|..-..+..+-.++...|+..+|+..|++......+.+|.+.
T Consensus       201 ----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P  243 (388)
T 2ff4_A          201 ----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  243 (388)
T ss_dssp             ----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence                5666778889999999999999999999999998877777554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.54  E-value=0.79  Score=42.05  Aligned_cols=88  Identities=8%  Similarity=-0.083  Sum_probs=63.6

Q ss_pred             ChHHHHHHHHHHHHHHHhhhC---CCC-------hhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchH
Q 016114          202 RGQEGRELLEECLLITEKYKG---KEH-------PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS  271 (395)
Q Consensus       202 ~~~~A~~~~~~al~~~~~~~~---~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  271 (395)
                      +--+|+..+.++++.......   ..+       +.....+...+..+...|+++-|+.+.++|+..        .|...
T Consensus       300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF  371 (754)
T 4gns_B          300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSF  371 (754)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCH
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------Cchhh
Confidence            344677888777754322111   111       112334555688888999999999999999884        57778


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHH
Q 016114          272 FPMLHLGITLYHLNRDKEAEKLVLEA  297 (395)
Q Consensus       272 ~~~~~la~~~~~~g~~~~A~~~~~~a  297 (395)
                      .+|..|+.+|...|+|+.|+-.+.-+
T Consensus       372 ~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          372 ESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            89999999999999999998776554

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=95.26  E-value=0.97  Score=36.71  Aligned_cols=213  Identities=11%  Similarity=0.077  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHhhhCCC
Q 016114          146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ-EGRELLEECLLITEKYKGKE  224 (395)
Q Consensus       146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~  224 (395)
                      +..-+..+.+.|++..|.++..-.++.+.+.. ...+.    .....+..++.....-+ .=..+.++++....+. +..
T Consensus        58 L~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~----~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~  131 (336)
T 3lpz_A           58 LASVSQTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDG----ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDY  131 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCH----HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSC
T ss_pred             HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCC
Confidence            33344455555666666666655555555431 11121    12234444444443211 2245667777766553 222


Q ss_pred             ChhHHHHHHHHHHHHHhhhcHHHHHHHHH--------HHHHHHHHhhCCCCcchHHHHHHH-HHHHHhcCChHHHHHHHH
Q 016114          225 HPSFVTHLLNLAASYSRSKNFVEAERLLR--------ICLDIMTKTVGPDDQSISFPMLHL-GITLYHLNRDKEAEKLVL  295 (395)
Q Consensus       225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~  295 (395)
                      .......+..+|..|.+.+++.+|..+|-        ...++..+......+.....+... ...|...++...|...+.
T Consensus       132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~  211 (336)
T 3lpz_A          132 PAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYR  211 (336)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            22334556778999999999999988872        111222222222234434433333 345677899999999887


Q ss_pred             HHHHHHHHHcC-----------------CCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHH
Q 016114          296 EALYIREIAFG-----------------KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLT  358 (395)
Q Consensus       296 ~al~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  358 (395)
                      ...+...+...                 +..|.. . +..+...-...+.     ...|+...+.+...+..+.+.....
T Consensus       212 ~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL-N-Fl~lLllt~q~~~-----~~lF~~L~~~Y~~~l~rd~~~~~~~  284 (336)
T 3lpz_A          212 IFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL-N-FISMLLLSVQKGS-----PDLFRQLKSKYEANLNELNGIWDTA  284 (336)
T ss_dssp             HHHHHHHHHCTTSCCEESCC--CCCEECTTCHHH-H-HHHHHHHHHHSCC-----HHHHHHHHHHTHHHHHTTTTTTHHH
T ss_pred             HHHHHHhhcCCCccccccccCCcccccCCCCchH-H-HHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHhcHHHHHHH
Confidence            77765533211                 112221 1 1122222233333     3456666555555444443256778


Q ss_pred             HHHHHHHHHHhcc
Q 016114          359 LKKVVSYLDKLGR  371 (395)
Q Consensus       359 ~~~la~~~~~~g~  371 (395)
                      +..+|..|+....
T Consensus       285 L~~IG~~YFgi~~  297 (336)
T 3lpz_A          285 LELIAEMYFGIQR  297 (336)
T ss_dssp             HHHHHHHHHCCCC
T ss_pred             HHHHHHHHcCCCC
Confidence            8899999987643

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.09  E-value=0.36  Score=41.75  Aligned_cols=145  Identities=10%  Similarity=0.099  Sum_probs=61.7

Q ss_pred             HHHhhhcHHHHHHHHHHHH--HHHHHhc-CcChHHHHHHHHHHHHHHHhhCchhHHHHHH-------HHHHHHHHHh-cC
Q 016114           26 MYSTLENYEKSMLVYQRVI--NVLESRY-GKTSILLVTSLLGMAKVLGSIGRAKKAVEIY-------HRVITILELN-RG   94 (395)
Q Consensus        26 ~~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------~~al~~~~~~-~~   94 (395)
                      .++..+++++|..+....+  +...... ..-+...+.+|+..+.++...|+........       ...+...+.. ..
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            3457788999988877665  2222110 0112345666777777777777765533221       1222222222 22


Q ss_pred             CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114           95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus        95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                      .+....+..++.+-..|...+.+++|..+..++.-  ... ...+...+..++.+|.++...++|.+|.+++..|+..+
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka  300 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEY--PHT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA  300 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--Ccc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            34455677888889999999999999999988741  100 01223467778899999999999999999999998743

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.90  E-value=1.8  Score=42.44  Aligned_cols=208  Identities=11%  Similarity=-0.036  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcc-------------cCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 016114          146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSN-------------YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  212 (395)
Q Consensus       146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  212 (395)
                      .+.+|.++...|++++|..+|+++-.-.....             ...+........|..+..++...|.++.+++..+.
T Consensus       845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l  924 (1139)
T 4fhn_B          845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL  924 (1139)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            47799999999999999999988632110000             00111112234567788899999999999999999


Q ss_pred             HHHHHHhhhCCCChh-HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHH
Q 016114          213 CLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  291 (395)
Q Consensus       213 al~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  291 (395)
                      |++..    +++++. ....+.++-..+...|+|++|...+...-+         ......++..|-......|+.+.=.
T Consensus       925 Ai~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~~~~~~L~  991 (1139)
T 4fhn_B          925 ADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQGKINQLL  991 (1139)
T ss_dssp             HHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhCCChhhhh
Confidence            98753    223333 233577788888999999999877643321         2223345555555555555543332


Q ss_pred             H--------HHHHHHHHHH-HH-cCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCC---HHHHHH
Q 016114          292 K--------LVLEALYIRE-IA-FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSES---EEVMLT  358 (395)
Q Consensus       292 ~--------~~~~al~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~  358 (395)
                      .        ..+..+.... .. .....|..   +..|-..+...|++...|..+|+.+..+....-....   ......
T Consensus       992 ~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Y---y~iLYs~ri~r~dyR~AA~vmYe~~~RL~~~~~~~~~~~~~~q~~~ 1068 (1139)
T 4fhn_B          992 NYSMPTLRQDVDNLLERKAFQMINVESQPCW---YNILFSWRYKHQNYRDAAAIIYEKLSRYISTTELIGKKERTFIIEH 1068 (1139)
T ss_dssp             HHTTTSCHHHHHHHHHHHHHHHHHHCCSTHH---HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHhCCccccCCCH---HHHhHhhhhccCChHHHHHHHHHHHHHhhhccccccchhHHHHHHH
Confidence            1        1122221111 11 01222332   3344555667788876888999998877653211111   123345


Q ss_pred             HHHHHHHHHHh
Q 016114          359 LKKVVSYLDKL  369 (395)
Q Consensus       359 ~~~la~~~~~~  369 (395)
                      +..+.+++.-.
T Consensus      1069 yL~~INaLslv 1079 (1139)
T 4fhn_B         1069 YLIVLNTLELL 1079 (1139)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHhcC
Confidence            55555555544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.53  E-value=0.37  Score=41.87  Aligned_cols=63  Identities=13%  Similarity=0.192  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      .++..+|.+......+..|..+|.+|..+        .|..+..++.||.+....|+.-+|+-+|.+++..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            46778899999999999999999999987        6888899999999999999999999999998853

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.50  E-value=0.89  Score=32.97  Aligned_cols=101  Identities=16%  Similarity=0.112  Sum_probs=64.6

Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHH
Q 016114          111 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  190 (395)
Q Consensus       111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  190 (395)
                      ....|+++.|.+..+..          ++   ...|..+|......|+++-|+.+|.++-+.                  
T Consensus        15 AL~lg~l~~A~e~a~~l----------~~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~------------------   63 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL----------ND---SITWERLIQEALAQGNASLAEMIYQTQHSF------------------   63 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH----------CC---HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH------------------
T ss_pred             HHhcCCHHHHHHHHHHh----------CC---HHHHHHHHHHHHHcCChHHHHHHHHHhCCH------------------
Confidence            35678888888775542          22   246788999999999999999999886442                  


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 016114          191 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  255 (395)
Q Consensus       191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  255 (395)
                      ..+..+|...|+.+.-....+.+...       ..      ++.-..++...|++++++++|.+.
T Consensus        64 ~~L~~Ly~~tg~~e~L~kla~iA~~~-------g~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           64 DKLSFLYLVTGDVNKLSKMQNIAQTR-------ED------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHT-------TC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHC-------cc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            23455667777765544443333221       11      112234466788888888877643

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.48  E-value=0.77  Score=31.76  Aligned_cols=66  Identities=15%  Similarity=0.037  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHhhCch---hHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           58 LVTSLLGMAKVLGSIGRA---KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        58 ~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      ...+.+++|+++....+.   .+++.+++..+..       +......+++.+|..+.+.|+|++|..+.+..+++
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            345677888888777654   4566666665542       23356788999999999999999999999999986

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.32  E-value=0.79  Score=31.25  Aligned_cols=66  Identities=12%  Similarity=0.033  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 016114          270 ISFPMLHLGITLYHLNRD---KEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  343 (395)
Q Consensus       270 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~  343 (395)
                      ...+.+++|+++.+..+.   .+++.+++..+.       .+....-..++.||..+.+.|++. +|..+.+..+++
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-------~~~~~~Rd~LYyLAvg~yklgdY~-~Ar~y~d~lL~~  107 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYS-MAKRYVDTLFEH  107 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHHHHHHTCHH-HHHHHHHHHHTT
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCcchhHHHHHHHHHHHHHhhhHH-HHHHHHHHHHhh
Confidence            446778999999887665   356666655544       222346678999999999999999 999999998864

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.65  E-value=1.4  Score=31.89  Aligned_cols=101  Identities=16%  Similarity=0.147  Sum_probs=65.7

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHH
Q 016114          153 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL  232 (395)
Q Consensus       153 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  232 (395)
                      ....|+++.|.+..+..            +.   ...|..+|......|+++-|+.+|.++-.                +
T Consensus        15 AL~lg~l~~A~e~a~~l------------~~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------------~   63 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL------------ND---SITWERLIQEALAQGNASLAEMIYQTQHS----------------F   63 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH------------CC---HHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------------H
T ss_pred             HHhcCCHHHHHHHHHHh------------CC---HHHHHHHHHHHHHcCChHHHHHHHHHhCC----------------H
Confidence            36789999988876543            11   34568899999999999999999987532                2


Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016114          233 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  297 (395)
Q Consensus       233 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  297 (395)
                      ..+..+|...|+.+.-....+.+..       ..+      +.....++...|++++++++|.+.
T Consensus        64 ~~L~~Ly~~tg~~e~L~kla~iA~~-------~g~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           64 DKLSFLYLVTGDVNKLSKMQNIAQT-------RED------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH-------TTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHH-------Ccc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            2344556667776654444433322       111      122234677889999998888654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.44  E-value=0.28  Score=42.40  Aligned_cols=143  Identities=4%  Similarity=-0.016  Sum_probs=62.1

Q ss_pred             HHHcCChHHHHHHHHHHH--HHHHHHh-CCCChhHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHHHhcccCC
Q 016114          111 FIKEGKAVDAESVFSRIL--KIYTKVY-GENDGRVGMAMCSLAHAKCANGNAEEAVEL-------YKKALRVIKDSNYMS  180 (395)
Q Consensus       111 ~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~a~~~~~~~~~~~  180 (395)
                      +...+++++|..+....+  ....... -.-+.-.+.+|+..+.++...|+.......       -...+...+.. ...
T Consensus       146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta-~lr  224 (523)
T 4b4t_S          146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIA-SLK  224 (523)
T ss_dssp             ---------------------------------------------------------CHHHHHHHHTHHHHHHHHC-CSC
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH-hcc
Confidence            456788888888776655  2221110 001233556677777777777776653221       11222233322 244


Q ss_pred             CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHH
Q 016114          181 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  257 (395)
Q Consensus       181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  257 (395)
                      .+....+.+++.+-+.|...+.+++|..+..++.-  ... ...+...+..++.+|.++.-+++|.+|.+++..|+.
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r  298 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEY--PHT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR  298 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--Ccc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            56666777888899999999999999999887631  100 012345577788899999999999999999998875

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=93.13  E-value=3  Score=33.94  Aligned_cols=246  Identities=7%  Similarity=-0.065  Sum_probs=135.0

Q ss_pred             HHhhhcH---HHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhh
Q 016114           27 YSTLENY---EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  103 (395)
Q Consensus        27 ~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  103 (395)
                      ....|+|   =+|-+.++.......+  .......++.++.-+..+...|++..|.++..-.++.+.+..-+-+   ...
T Consensus        22 ~I~~G~y~~~YEAHQ~~RTi~~Ry~~--~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~---~~~   96 (336)
T 3lpz_A           22 RIAEGQPEEQYEAAQETRLVAARYSK--QGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD---GAS   96 (336)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC---HHH
T ss_pred             HHhCCCCccccHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---HHH
Confidence            3456777   6676666665544433  2344556666677777777888888888777777777666532211   234


Q ss_pred             HHhHHHHHHHcCChH-HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH--------HHHHHH
Q 016114          104 LFSLGSLFIKEGKAV-DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK--------ALRVIK  174 (395)
Q Consensus       104 ~~~l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------a~~~~~  174 (395)
                      ...+..++.....-+ .=..+..+++....+. +.........+..+|..|...+++.+|..+|--        ..++.-
T Consensus        97 ~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~  175 (336)
T 3lpz_A           97 RGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEY  175 (336)
T ss_dssp             HHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHH
Confidence            445555554444321 2355677777776663 322222335677899999999999999887621        111111


Q ss_pred             hcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC-----------------CCChhHHHHHHHHHH
Q 016114          175 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG-----------------KEHPSFVTHLLNLAA  237 (395)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~~~~~~~~~~~~la~  237 (395)
                      +..... .+.............|...++...|...+..-.+...+...                 +..|..-  +..+..
T Consensus       176 ew~~~~-~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLN--Fl~lLl  252 (336)
T 3lpz_A          176 EWYKQD-ESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLN--FISMLL  252 (336)
T ss_dssp             HHHHTS-CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHH--HHHHHH
T ss_pred             HHHHhc-CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHH--HHHHHH
Confidence            110001 11222222233344577889999999888776665432111                 1122211  122222


Q ss_pred             HHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC
Q 016114          238 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN  285 (395)
Q Consensus       238 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  285 (395)
                      +-+..+.    ...|....+.+...+..+.+.....+..+|..|+...
T Consensus       253 lt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~  296 (336)
T 3lpz_A          253 LSVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ  296 (336)
T ss_dssp             HHHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred             HHHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence            3334443    3455555555554444443266777788888888654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=92.99  E-value=1.8  Score=30.98  Aligned_cols=96  Identities=15%  Similarity=0.023  Sum_probs=67.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH----------HHH
Q 016114          192 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI----------MTK  261 (395)
Q Consensus       192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----------~~~  261 (395)
                      .++..+.-.|.+..++-.+..             ..++.+.+.-+.+|...+++..|+..++..++-          .-+
T Consensus        38 L~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~  104 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ  104 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred             hhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence            467778889999888766542             223455566778999999999999999988731          000


Q ss_pred             hhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114          262 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  300 (395)
Q Consensus       262 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  300 (395)
                      ..-.+..+....+..+|.++...|+.++|+.++......
T Consensus       105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence            111111233345678899999999999999999887654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.33  E-value=9.1  Score=37.59  Aligned_cols=105  Identities=11%  Similarity=0.106  Sum_probs=73.9

Q ss_pred             hhHHhHHHHHHHcCChHHHHHHHHHHHHHH-------------HHHh--CCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 016114          102 LPLFSLGSLFIKEGKAVDAESVFSRILKIY-------------TKVY--GENDGRVGMAMCSLAHAKCANGNAEEAVELY  166 (395)
Q Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  166 (395)
                      ...+.+|.++...|++++|..+|+++-.-.             ....  ..........|..+..++...|.++.++++.
T Consensus       843 ~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa  922 (1139)
T 4fhn_B          843 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS  922 (1139)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            345789999999999999999998863210             0000  0011123345777888999999999999999


Q ss_pred             HHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 016114          167 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  211 (395)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  211 (395)
                      +.|++...     ..+.......+.++-..+...|+|++|...+.
T Consensus       923 ~lAi~~~~-----~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~  962 (1139)
T 4fhn_B          923 LLADASKE-----TDDEDLSIAITHETLKTACAAGKFDAAHVALM  962 (1139)
T ss_dssp             HHHHHHCC-----SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred             HHHHHhcc-----CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            99987531     22333334467788888999999999987764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=92.13  E-value=2.4  Score=30.36  Aligned_cols=97  Identities=16%  Similarity=0.094  Sum_probs=70.0

Q ss_pred             HHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH----------H
Q 016114           63 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY----------T  132 (395)
Q Consensus        63 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------~  132 (395)
                      ..++..++..|+|..++-++.             .-..+.+.+.-+.||....++..|+..++..+.--          -
T Consensus        37 lL~~I~LyyngEY~R~Lf~L~-------------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~  103 (242)
T 3kae_A           37 MLMSIVLYLNGEYTRALFHLH-------------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI  103 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH-------------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred             hhhhhhhhhcchHhHHHHHHH-------------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence            346778888999988876553             23456667778899999999999999999887310          0


Q ss_pred             HHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          133 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       133 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      ..+--+..+.-..+..+|.++...|+-++|+.++......
T Consensus       104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~  143 (242)
T 3kae_A          104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK  143 (242)
T ss_dssp             HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence            0011112233345778999999999999999999987764

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.00  E-value=0.56  Score=40.76  Aligned_cols=62  Identities=18%  Similarity=0.224  Sum_probs=56.0

Q ss_pred             hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114          102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  171 (395)
Q Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  171 (395)
                      .++..||.+......+..|..+|.+|..+        .|..+..++.||.+....|+.-+|+-+|-+++.
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            46778999999999999999999999988        577778999999999999999999999999875

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=90.54  E-value=5.9  Score=31.95  Aligned_cols=103  Identities=8%  Similarity=-0.059  Sum_probs=58.4

Q ss_pred             hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHhcccCCC
Q 016114          103 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE-EAVELYKKALRVIKDSNYMSL  181 (395)
Q Consensus       103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~  181 (395)
                      .++.-+..+.+.|++..|-++..-.++.+.+..   .+........+..++.....-+ .=.++.+++++...+..   .
T Consensus        55 lL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~---~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g---~  128 (312)
T 2wpv_A           55 LISQGALSFLKAKQGGSGTDLIFYLLEVYDLAE---VKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFS---E  128 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTS---S
T ss_pred             HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcC---C
Confidence            333444555566667777666666666655532   1112223444555544432111 22567778888776642   1


Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 016114          182 DDSIMENMRIDLAELLHIVGRGQEGRELLE  211 (395)
Q Consensus       182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  211 (395)
                      ....-...+..+|..|...|++.+|..+|-
T Consensus       129 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          129 YKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             CTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            111223456778999999999998888774

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.78  E-value=9.8  Score=32.01  Aligned_cols=136  Identities=7%  Similarity=0.003  Sum_probs=87.0

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCC---------CChhHHHH
Q 016114           75 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE---------NDGRVGMA  145 (395)
Q Consensus        75 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~  145 (395)
                      .+.-.++|...+.-+....  +.-..+.   .+..+.....+.++|.+++++...........         .......+
T Consensus        55 ~~~~~~ly~~fi~~f~~ki--n~L~lv~---~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i  129 (393)
T 4b4t_O           55 TPLRLRLYDNFVSKFYDKI--NQLSVVK---YLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLI  129 (393)
T ss_dssp             CCCCHHHHHHHHHHHHHHS--CSHHHHH---TTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHH
T ss_pred             chHHHHHHHHHHHHHHHhc--CHHHHHH---HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHH
Confidence            3344566666665554332  1111111   23445566778999999988765443332211         11224556


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114          146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  217 (395)
Q Consensus       146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  217 (395)
                      ...++..|...|+.++|..+++++-......  .+.++......+...+..+...+++..+....-..+...
T Consensus       130 ~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~--~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~  199 (393)
T 4b4t_O          130 DSEIARTYLLKNDLVKARDLLDDLEKTLDKK--DSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL  199 (393)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS--CCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence            6788999999999999999999998887764  344555666677777888888899887766655555443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=88.59  E-value=8.5  Score=31.04  Aligned_cols=182  Identities=8%  Similarity=-0.063  Sum_probs=111.6

Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHh
Q 016114           27 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS  106 (395)
Q Consensus        27 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  106 (395)
                      -...|+|=+|.+.++.......+.  .......+.++.-+..+...|++..|.++..-.++.+.+...   +........
T Consensus        23 ~I~~G~yYEAhQ~~Rtl~~Ry~~~--~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~---~~~~~~~~r   97 (312)
T 2wpv_A           23 KIKAGDYYEAHQTLRTIANRYVRS--KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV---KVDDISVAR   97 (312)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---CCSHHHHHH
T ss_pred             HhhccChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC---CCCHHHHHH
Confidence            345678888888877766655442  345566777777788888888888888887777777766432   222334445


Q ss_pred             HHHHHHHcCChH-HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------HHHH
Q 016114          107 LGSLFIKEGKAV-DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA------------LRVI  173 (395)
Q Consensus       107 l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------~~~~  173 (395)
                      +..++.....-+ .=.++..+++....+.. .........+..+|..|...|++.+|..+|-..            .+..
T Consensus        98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~  176 (312)
T 2wpv_A           98 LVRLIAELDPSEPNLKDVITGMNNWSIKFS-EYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWL  176 (312)
T ss_dssp             HHHHHTTCCTTCTTHHHHHHHHHHHHHHTS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCchHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence            555554433222 23567777887766542 222223456788999999999999999877321            1122


Q ss_pred             HhcccCCCCchHHHHHHHHH-HHHHHHcCChHHHHHHHHHHHHHH
Q 016114          174 KDSNYMSLDDSIMENMRIDL-AELLHIVGRGQEGRELLEECLLIT  217 (395)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~  217 (395)
                      ...  .. ..+.....+... ...|...|+...|...+....+..
T Consensus       177 ~~~--~~-~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~  218 (312)
T 2wpv_A          177 CQV--DD-IEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF  218 (312)
T ss_dssp             HHT--TC-CCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred             Hhc--CC-CCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            210  00 122222322223 335667899999999888766554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=88.27  E-value=7.1  Score=30.53  Aligned_cols=123  Identities=15%  Similarity=0.072  Sum_probs=75.5

Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Q 016114          239 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDC  318 (395)
Q Consensus       239 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  318 (395)
                      ..+.|+.++|+......++        .+|........|..++.-.|+++.|.+-++.+.++.     +.....+..|..
T Consensus         7 ll~~g~L~~al~~~~~~VR--------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~-----p~~~~~a~~yr~   73 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-----PEYLPGASQLRH   73 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----GGGHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHH--------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----chhhHHHHHHHH
Confidence            4577899999998888776        568888888899999999999999999888777653     222222222222


Q ss_pred             HHHHHHHcCCchhHHHHHHHHHHH--HHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHH
Q 016114          319 LVSIQTRLGEDDTKLLELLKRVLR--IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  387 (395)
Q Consensus       319 l~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  387 (395)
                      +-.+-.           .=++.+.  .....++. .+. ......-+......|+.++|..+-.++.+..+
T Consensus        74 lI~aE~-----------~R~~vfaG~~~P~~~g~-~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap  131 (273)
T 1zbp_A           74 LVKAAQ-----------ARKDFAQGAATAKVLGE-NEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  131 (273)
T ss_dssp             HHHHHH-----------HHHHHTTSCCCEECCCS-CHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHH-----------HHHHHHcCCCCCCCCCC-CHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence            211111           0011110  00111222 222 33333345566677999999999888877643

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.83  E-value=15  Score=30.93  Aligned_cols=131  Identities=13%  Similarity=-0.064  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCC---------CCcchHHHHH
Q 016114          205 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP---------DDQSISFPML  275 (395)
Q Consensus       205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~~  275 (395)
                      .-.++|+..+.-+....  +.-..+.   .+..+.....+.++|.+++++...........         .......+..
T Consensus        57 ~~~~ly~~fi~~f~~ki--n~L~lv~---~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~  131 (393)
T 4b4t_O           57 LRLRLYDNFVSKFYDKI--NQLSVVK---YLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDS  131 (393)
T ss_dssp             CCHHHHHHHHHHHHHHS--CSHHHHH---TTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc--CHHHHHH---HHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHH
Confidence            33456666665554333  1111111   12344556678899999988765433332211         1123455667


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q 016114          276 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL  341 (395)
Q Consensus       276 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al  341 (395)
                      .++..|...|+.++|..+++++-.......+.+.......+...+..+...+++. .+....-..+
T Consensus       132 ~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a-~~y~~~l~~l  196 (393)
T 4b4t_O          132 EIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFN-SFYYTSLLYL  196 (393)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHH
Confidence            8899999999999999999999888776544443344555556677777777766 4444333333

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=85.46  E-value=11  Score=29.28  Aligned_cols=96  Identities=14%  Similarity=0.124  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHHhhh--CCCChhHHH
Q 016114          163 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR----------GQEGRELLEECLLITEKYK--GKEHPSFVT  230 (395)
Q Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~~  230 (395)
                      ...+..++.+..+...+....+.....+-..|..|...-.          .+.|...|+.|.++.....  .+.+|....
T Consensus       118 ~~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLG  197 (268)
T 3efz_A          118 LLESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLA  197 (268)
T ss_dssp             HHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence            3455556666554321222222222233344666654322          3678899999999998777  788888777


Q ss_pred             HHHHHHHHHH-hhhcHHHHHHHHHHHHHH
Q 016114          231 HLLNLAASYS-RSKNFVEAERLLRICLDI  258 (395)
Q Consensus       231 ~~~~la~~~~-~~~~~~~A~~~~~~a~~~  258 (395)
                      ...|.+..|. -.+++++|..+.++|.+-
T Consensus       198 LaLNfSVFyYEIln~p~~Ac~lAk~AFde  226 (268)
T 3efz_A          198 TILNYTILKYDLLGNPEGAMKFANRAIQA  226 (268)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            7777777766 469999999999998874

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=84.89  E-value=11  Score=28.74  Aligned_cols=182  Identities=15%  Similarity=0.063  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHH-cCChHHHHHHHHHHHHHHHHHhC-CCC
Q 016114           62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYG-END  139 (395)
Q Consensus        62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~-~~~  139 (395)
                      +..++.+..+.++|++...+.+++...       +......=.+.++.+|-. .|....+...+....+. +...| ...
T Consensus        11 ~v~~AklaeqaeRyddM~~~mk~v~~~-------~~eLs~EERnLLSvaYKNvig~rR~swRiissieqk-e~~~~~~~~   82 (236)
T 3iqu_A           11 LIQKAKLAEQAERYEDMAAFMKGAVEK-------GEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQK-SNEEGSEEK   82 (236)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSTTCCCC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhc-------CCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH-HhhcCCHHH
Confidence            445678888999999999998887764       122222333344444422 12222233322211111 10001 111


Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC-CchHHHHHHHHHHHHHHH-----cCC-----hHHHHH
Q 016114          140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL-DDSIMENMRIDLAELLHI-----VGR-----GQEGRE  208 (395)
Q Consensus       140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~-----~g~-----~~~A~~  208 (395)
                      .....-+...  +      -.+=...+...+.+......+.. +.......+-..|..|..     .|+     .+.|..
T Consensus        83 ~~~i~~yr~k--i------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~  154 (236)
T 3iqu_A           83 GPEVREYREK--V------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARS  154 (236)
T ss_dssp             CSHHHHHHHH--H------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHH--H------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHH
Confidence            1122111111  0      11223344555555443211111 122222223344555543     233     367889


Q ss_pred             HHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH-hhhcHHHHHHHHHHHHHHH
Q 016114          209 LLEECLLITEKYKGKEHPSFVTHLLNLAASYS-RSKNFVEAERLLRICLDIM  259 (395)
Q Consensus       209 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~  259 (395)
                      .|+.|.++......+.||.......|.+..|. -.++.++|..+.+++.+-.
T Consensus       155 aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~A  206 (236)
T 3iqu_A          155 AYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEA  206 (236)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999999988888899988777777777766 4589999999888887643

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=84.46  E-value=13  Score=29.01  Aligned_cols=92  Identities=12%  Similarity=0.048  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHhcCc--ChHHHHHHHHHHHHHHHhhCc----------hhHHHHHHHHHHHHHHHhc--CCCChhhhhhH
Q 016114           39 VYQRVINVLESRYGK--TSILLVTSLLGMAKVLGSIGR----------AKKAVEIYHRVITILELNR--GTESADLVLPL  104 (395)
Q Consensus        39 ~~~~al~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~  104 (395)
                      .+...+.+..+.+-+  .++..+-.+-..|..|.....          .+.|...|+.|.++.....  +|.+|......
T Consensus       120 iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLa  199 (268)
T 3efz_A          120 ESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATI  199 (268)
T ss_dssp             HHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Confidence            344455555544322  222333334445666654322          4678899999999998777  77888877777


Q ss_pred             HhHHHHHH-HcCChHHHHHHHHHHHHH
Q 016114          105 FSLGSLFI-KEGKAVDAESVFSRILKI  130 (395)
Q Consensus       105 ~~l~~~~~-~~g~~~~A~~~~~~al~~  130 (395)
                      .+.+..|+ -.++.++|..+.++|++-
T Consensus       200 LNfSVFyYEIln~p~~Ac~lAk~AFde  226 (268)
T 3efz_A          200 LNYTILKYDLLGNPEGAMKFANRAIQA  226 (268)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            77777666 579999999999988775

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=82.66  E-value=5.5  Score=24.87  Aligned_cols=36  Identities=11%  Similarity=0.066  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES   49 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   49 (395)
                      -..+..+...+..+...|+|++|+.+.+++......
T Consensus        12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e   47 (97)
T 2crb_A           12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE   47 (97)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            346777788999999999999999999999876544

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=82.12  E-value=15  Score=28.24  Aligned_cols=58  Identities=17%  Similarity=0.140  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHHH
Q 016114          203 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIMT  260 (395)
Q Consensus       203 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~  260 (395)
                      .+.|...|+.|.++......+.||.......|.+..|.. .++.++|..+.+++++-..
T Consensus       147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai  205 (248)
T 3uzd_A          147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAI  205 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            367889999999999888888999887777777777665 6999999999888877543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	395
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.003
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-07
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	6e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	9e-04
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	0.002
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 2e-10
 Identities = 41/264 (15%), Positives = 92/264 (34%), Gaps = 50/264 (18%)

Query: 22  HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 81
           ++G +++       ++  +++ + +  +         + + + +  VL       +AV  
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPN--------FLDAYINLGNVLKEARIFDRAVAA 225

Query: 82  YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 141
           Y R +++        S +  +   +L  ++ ++G    A   + R +++           
Sbjct: 226 YLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPH 269

Query: 142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 201
              A C+LA+A    G+  EA + Y  ALR                +   +LA +    G
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALR----------LCPTHADSLNNLANIKREQG 319

Query: 202 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 261
             +E   L  + L +         P F     NLA+   +     EA    +  + I   
Sbjct: 320 NIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--- 368

Query: 262 TVGPDDQSISFPMLHLGITLYHLN 285
                  + +    ++G TL  + 
Sbjct: 369 -----SPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 8e-09
 Identities = 41/236 (17%), Positives = 79/236 (33%), Gaps = 42/236 (17%)

Query: 65  MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 124
           +  V  + G    A+  + + +T+          + +    +LG++  +      A + +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAY 226

Query: 125 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 184
            R L +             +   +LA      G  + A++ Y++A+ +            
Sbjct: 227 LRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-------- 270

Query: 185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 244
              +   +LA  L   G   E  +     L        +  P+    L NLA       N
Sbjct: 271 --PDAYCNLANALKEKGSVAEAEDCYNTAL--------RLCPTHADSLNNLANIKREQGN 320

Query: 245 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 300
             EA RL R  L++      P+  +      +L   L    + +EA     EA+ I
Sbjct: 321 IEEAVRLYRKALEVF-----PEFAAA---HSNLASVLQQQGKLQEALMHYKEAIRI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 9e-06
 Identities = 23/153 (15%), Positives = 59/153 (38%), Gaps = 24/153 (15%)

Query: 19  ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 78
           +  ++  +Y      + ++  Y+R I +              +   +A  L   G   +A
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH--------FPDAYCNLANALKEKGSVAEA 290

Query: 79  VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 138
            + Y+  + +   +  +          +L ++  ++G   +A  ++ + L+++ +     
Sbjct: 291 EDCYNTALRLCPTHADSL--------NNLANIKREQGNIEEAVRLYRKALEVFPEFA--- 339

Query: 139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 171
                 A  +LA      G  +EA+  YK+A+R
Sbjct: 340 -----AAHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 7e-05
 Identities = 35/230 (15%), Positives = 63/230 (27%), Gaps = 43/230 (18%)

Query: 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 204
           A  +L     A G    A+  ++KA+ +  +            +  I+L  +L       
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF----------LDAYINLGNVLKEARIFD 220

Query: 205 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 264
                                P+      NLA  Y        A    R  +++      
Sbjct: 221 RAVAAYLRA--------LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL------ 266

Query: 265 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQT 324
                      +L   L       EAE     AL +                + L +I+ 
Sbjct: 267 --QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL--------NNLANIKR 316

Query: 325 RLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE 374
             G  + + + L ++ L +       E       L  V   L + G+ +E
Sbjct: 317 EQGNIE-EAVRLYRKALEVFP-----EFAAAHSNLASV---LQQQGKLQE 357

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 7/68 (10%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 104 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 163
              L     + G    AE    ++ +      G         +  L+         + + 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTG--------VLLLLSSIHFQCRRLDRSA 53

Query: 164 ELYKKALR 171
                A++
Sbjct: 54  HFSTLAIK 61

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 8/69 (11%)

Query: 232 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 291
            + LA    ++ +F  AER              PD+  +   +L L    +   R   + 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQE-----PDNTGV---LLLLSSIHFQCRRLDRSA 53

Query: 292 KLVLEALYI 300
                A+  
Sbjct: 54  HFSTLAIKQ 62

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 49.9 bits (117), Expect = 2e-07
 Identities = 39/333 (11%), Positives = 89/333 (26%), Gaps = 50/333 (15%)

Query: 10  KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 69
                        +G +        +S+ + Q+   +          L          +L
Sbjct: 44  PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE--IL 101

Query: 70  GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 129
            + G  + A E   +   ++      +       +     L     +  +AE+     ++
Sbjct: 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 161

Query: 130 IYTKVY--------------------------------------GENDGRVGMAMCSLAH 151
           + +                                           +   +  A      
Sbjct: 162 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 221

Query: 152 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE 211
                G+   A    +   +    +N+       ++    ++A    ++G  +    +LE
Sbjct: 222 YWQMTGDKAAAANWLRHTAKPEFANNH------FLQGQWRNIARAQILLGEFEPAEIVLE 275

Query: 212 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS 271
           E          +       +LL L   Y ++    +A+R+L   L +  +T       I 
Sbjct: 276 ELNEN--ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 333

Query: 272 FP-MLHLGITLYHLNRDKEAEKLVLEALYIREI 303
              M      L  LN   E E+   + + +REI
Sbjct: 334 GEAMAQQLRQLIQLNTLPELEQHRAQRI-LREI 365

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 21/138 (15%), Positives = 40/138 (28%), Gaps = 7/138 (5%)

Query: 149 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 208
            A     +GN +EA  L K AL  +    + S   +        L E+LH  G       
Sbjct: 18  RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATS-----VLGEVLHCKGELTRSLA 72

Query: 209 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 268
           L+++   +    +       +  L+  +           A         ++ +       
Sbjct: 73  LMQQTEQMA--RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 130

Query: 269 SISFPMLHLGITLYHLNR 286
              F +      L+   R
Sbjct: 131 MHEFLVRIRAQLLWAWAR 148

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 14/167 (8%), Positives = 41/167 (24%), Gaps = 5/167 (2%)

Query: 182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 241
           +D++        A++    G   E   L +  L   E+       S +     L      
Sbjct: 7   EDTMHAEFNALRAQVAINDGNPDEAERLAKLAL---EELPPGWFYSRIVATSVLGEVLHC 63

Query: 242 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 301
                 +  L++    +  +          + ++     L+     + A +   +A  + 
Sbjct: 64  KGELTRSLALMQQTEQMARQ--HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 121

Query: 302 EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF 348
                +        +     +       D         +  +   + 
Sbjct: 122 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 168

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 30/280 (10%), Positives = 70/280 (25%), Gaps = 45/280 (16%)

Query: 16  LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA 75
             A         +     E +   Y +++  L + +    +        +  +       
Sbjct: 78  NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF-NVDLPCRVKSSQLGIISNKQTHT 136

Query: 76  KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 135
              V+      +                L  LG +     +   AES +    ++     
Sbjct: 137 SAIVKPQSSSCSY----------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQL----- 181

Query: 136 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 195
                  G     LA    + G+    +  Y +++ V           +   N++     
Sbjct: 182 ---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF------PAASTNLQK---- 228

Query: 196 LLHIVGRGQEGRELLEECLLITEKYKGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRI 254
                         L + L   ++ K K     F+   +        SK+  +   L   
Sbjct: 229 -------------ALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREK 275

Query: 255 CLDIMTKTV--GPDDQSISFPMLHLGITLYHLNRDKEAEK 292
             +   + +     +      +  + +   H  RD   E 
Sbjct: 276 LEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNET 315

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 41/321 (12%), Positives = 89/321 (27%), Gaps = 33/321 (10%)

Query: 9   LKDDEPLLDA-ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 67
            +++ PL D       G       +   ++L+++  +   + ++       + +   +  
Sbjct: 10  FEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ-QDPKH-------MEAWQYLGT 61

Query: 68  VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 127
                 +   A+    R + +   N+    A  V            E          +  
Sbjct: 62  TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 121

Query: 128 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI-- 185
             +     G     +G +   L      +    E  EL+  A+R+   S    +   +  
Sbjct: 122 HLVTPAEEGAGGAGLGPSKRILGSLLS-DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180

Query: 186 -----------------MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 228
                              ++R +   L + +G         EE +    +   +  P +
Sbjct: 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL-ELQPGY 239

Query: 229 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP---MLHLGITLYHLN 285
           +    NL  S        EA       L++  K+ GP  +  +        L + L  L 
Sbjct: 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 299

Query: 286 RDKEAEKLVLEALYIREIAFG 306
           +           L      FG
Sbjct: 300 QSDAYGAADARDLSTLLTMFG 320

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 9e-04
 Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 15/156 (9%)

Query: 104 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 163
           L++ G L   +     A   FS +   ++++             ++        N  EA 
Sbjct: 8   LWNEGVLAADKKDWKGALDAFSAVQDPHSRIC-----------FNIGCMYTILKNMTEAE 56

Query: 164 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 223
           + + +++   K          ++          +  +   +E    L    LI  K  G 
Sbjct: 57  KAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL---KEALIQLRGNQLIDYKILGL 113

Query: 224 EHPSFVTHLL-NLAASYSRSKNFVEAERLLRICLDI 258
           +   F   +L N+A  Y++ + + +AE  L +   +
Sbjct: 114 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 26/134 (19%), Positives = 36/134 (26%), Gaps = 20/134 (14%)

Query: 145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI--------MENMRID---- 192
           A  +      A G  E+A      ALR  +      L D          +   ++     
Sbjct: 13  AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTA 72

Query: 193 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 252
            AE     GR       LE            EHP        L  +Y  S    +A    
Sbjct: 73  KAEAEIACGRASAVIAELEALT--------FEHPYREPLWTQLITAYYLSDRQSDALGAY 124

Query: 253 RICLDIMTKTVGPD 266
           R     +   +G D
Sbjct: 125 RRVKTTLADDLGID 138

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 25/147 (17%)

Query: 155 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 214
           + G  ++A+EL  +A++        SL        R    ELL I G  +   E L + +
Sbjct: 8   SEGQLQQALELLIEAIK--ASPKDASL--------RSSFIELLCIDGDFERADEQLMQSI 57

Query: 215 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM 274
                   K  P ++     L      ++   +  +                +       
Sbjct: 58  --------KLFPEYLPGASQLRHLVKAAQARKDFAQGAA-------TAKVLGENEELTKS 102

Query: 275 LHLGITLYHLNRDKEAEKLVLEALYIR 301
           L            ++  +L L+   +R
Sbjct: 103 LVSFNLSMVSQDYEQVSELALQIEELR 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	395
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.98
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.96
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.94
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.89
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.88
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.84
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.83
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.83
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.81
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.8
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.78
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.56
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.56
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.53
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.52
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.51
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.51
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.5
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.46
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.46
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.45
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.44
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.42
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.42
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.41
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.4
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.39
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.38
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.37
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.37
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.36
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.35
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.33
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.28
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.26
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.22
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.19
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.11
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.0
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.9
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.83
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.63
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.6
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.14
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.06
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.84
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.73
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	93.32
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	91.53
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	91.47
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	91.13
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	88.54
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	88.17
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	88.1
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	87.26
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	86.22
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	82.38

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-31  Score=228.46  Aligned_cols=312  Identities=16%  Similarity=0.142  Sum_probs=260.3

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhh
Q 016114           21 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  100 (395)
Q Consensus        21 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  100 (395)
                      +.+|..++..|++++|+..|+++++..        |....++..+|.++...|++++|+..++++++.        .|..
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~   66 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQE--------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLL   66 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC
Confidence            357899999999999999999998752        334567889999999999999999999999987        5667


Q ss_pred             hhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH----------------------------------------------
Q 016114          101 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV----------------------------------------------  134 (395)
Q Consensus       101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------------------------------------------  134 (395)
                      ..++..+|.++...|++++|+..+..+.......                                              
T Consensus        67 ~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (388)
T d1w3ba_          67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK  146 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7899999999999999999999998876541100                                              


Q ss_pred             --------------hCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHc
Q 016114          135 --------------YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV  200 (395)
Q Consensus       135 --------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  200 (395)
                                    .....|....++..+|..+...|++++|...++++++..       |+.   ..++..+|.++...
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~~---~~~~~~l~~~~~~~  216 (388)
T d1w3ba_         147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-------PNF---LDAYINLGNVLKEA  216 (388)
T ss_dssp             TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHTT
T ss_pred             ccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-------ccc---HHHHHHHhhhhhcc
Confidence                          000122334667888999999999999999999998852       232   45678899999999


Q ss_pred             CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Q 016114          201 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT  280 (395)
Q Consensus       201 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  280 (395)
                      |++++|+..++++...        .+.....+..+|.++...|++++|+..|++++++        +|....++..+|.+
T Consensus       217 ~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~  280 (388)
T d1w3ba_         217 RIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANA  280 (388)
T ss_dssp             TCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhHHH--------hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence            9999999999998775        2334567888999999999999999999999873        56777889999999


Q ss_pred             HHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Q 016114          281 LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK  360 (395)
Q Consensus       281 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  360 (395)
                      +...|++++|+..+++++...        |.....+..++.++...|+++ +|+..|++++++        +|+...++.
T Consensus       281 ~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~--------~p~~~~~~~  343 (388)
T d1w3ba_         281 LKEKGSVAEAEDCYNTALRLC--------PTHADSLNNLANIKREQGNIE-EAVRLYRKALEV--------FPEFAAAHS  343 (388)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHH-HHHHHHHHHTTS--------CTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhhccC--------CccchhhhHHHHHHHHCCCHH-HHHHHHHHHHHh--------CCCCHHHHH
Confidence            999999999999999887643        334456789999999999999 999999999863        345567899


Q ss_pred             HHHHHHHHhcchhhhchhhHHHHHHHHHHHh
Q 016114          361 KVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  391 (395)
Q Consensus       361 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  391 (395)
                      .+|.+|..+|++++|+..|++++++.|+...
T Consensus       344 ~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  374 (388)
T d1w3ba_         344 NLASVLQQQGKLQEALMHYKEAIRISPTFAD  374 (388)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999998776543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=7.9e-31  Score=222.86  Aligned_cols=300  Identities=19%  Similarity=0.180  Sum_probs=249.8

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   92 (395)
                      +|....++..+|.++...|++++|+..|+++++.        +|....++..+|.++...|++++|+..+..+.......
T Consensus        29 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  100 (388)
T d1w3ba_          29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF  100 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHhhhhcccccccccccccccccccc
Confidence            4555677899999999999999999999999986        23446788999999999999999999998876531000


Q ss_pred             ------------------------------c------------------------------CCCChhhhhhHHhHHHHHH
Q 016114           93 ------------------------------R------------------------------GTESADLVLPLFSLGSLFI  112 (395)
Q Consensus        93 ------------------------------~------------------------------~~~~~~~~~~~~~l~~~~~  112 (395)
                                                    .                              ....|....++..+|..+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  180 (388)
T d1w3ba_         101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN  180 (388)
T ss_dssp             HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhccccc
Confidence                                          0                              0012344567888999999


Q ss_pred             HcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHH
Q 016114          113 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID  192 (395)
Q Consensus       113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  192 (395)
                      ..|++++|...+++++..        +|....++..+|.++...|++++|+..++++....       +..   ...+..
T Consensus       181 ~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~  242 (388)
T d1w3ba_         181 AQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-------PNH---AVVHGN  242 (388)
T ss_dssp             TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-------TTC---HHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHh--------CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-------hhH---HHHHHH
Confidence            999999999999999986        45556788999999999999999999999988752       222   345678


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHH
Q 016114          193 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF  272 (395)
Q Consensus       193 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  272 (395)
                      +|.++...|++++|+..|++++++        .|....++..+|.++...|++++|+..++.++..        .|....
T Consensus       243 l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~  306 (388)
T d1w3ba_         243 LACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHAD  306 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--------CCccch
Confidence            999999999999999999999875        3455678899999999999999999999998773        456677


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCC
Q 016114          273 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSES  352 (395)
Q Consensus       273 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  352 (395)
                      .+..++.++...|++++|+.+|++++++.        |....++..+|.++...|+++ +|+..|++++++        +
T Consensus       307 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~l--------~  369 (388)
T d1w3ba_         307 SLNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQ-EALMHYKEAIRI--------S  369 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHTTSC--------TTCHHHHHHHHHHHHTTTCCH-HHHHHHHHHHTT--------C
T ss_pred             hhhHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--------C
Confidence            88999999999999999999999998742        445667899999999999999 999999999964        3


Q ss_pred             HHHHHHHHHHHHHHHHhcc
Q 016114          353 EEVMLTLKKVVSYLDKLGR  371 (395)
Q Consensus       353 ~~~~~~~~~la~~~~~~g~  371 (395)
                      |+...++.++|.+|.++||
T Consensus       370 P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         370 PTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHcCC
Confidence            4556789999999999886

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.3e-25  Score=188.66  Aligned_cols=345  Identities=10%  Similarity=-0.011  Sum_probs=280.8

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      +..+......|.++...|++++|+.+++++++..+.   .+.+..+.++..+|.++...|++++|+..+++++.+.... 
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~---~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~-   84 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-   84 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC---CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-
Confidence            345666677899999999999999999999886422   2344567789999999999999999999999999987764 


Q ss_pred             CCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114           94 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                       ++.+....++..++.++...|++..|...+.+++.+......+..+.....+..+|.++...|+++.|...+.++....
T Consensus        85 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~  163 (366)
T d1hz4a_          85 -DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL  163 (366)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence             3566777889999999999999999999999999998887666777788888999999999999999999999999876


Q ss_pred             HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114          174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  253 (395)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  253 (395)
                      ...     ........+...+..+...+++.++...+.++........ ...+.....+..++.++...|++++|...++
T Consensus       164 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  237 (366)
T d1hz4a_         164 SSY-----QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK-YHSDWISNANKVRVIYWQMTGDKAAAANWLR  237 (366)
T ss_dssp             TTS-----CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhh-----hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            432     3334456678899999999999999999999998876543 2344556677888999999999999999998


Q ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHH
Q 016114          254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL  333 (395)
Q Consensus       254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  333 (395)
                      +++..    ....++.....+.++|.++...|++++|...+++++......  ...+....++..+|.++...|+++ +|
T Consensus       238 ~~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A  310 (366)
T d1hz4a_         238 HTAKP----EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKS-DA  310 (366)
T ss_dssp             HSCCC----CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHH-HH
T ss_pred             HHHHh----ccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHH-HH
Confidence            87652    223345566778899999999999999999999999988764  566788889999999999999999 99


Q ss_pred             HHHHHHHHHHHHhccCCCCHH---HHHHHHHHHHHHHHhcchhhhchh
Q 016114          334 LELLKRVLRIQEREFGSESEE---VMLTLKKVVSYLDKLGRKEEKFPL  378 (395)
Q Consensus       334 ~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~  378 (395)
                      .+.+++++++.++. +. ...   ....+..+...+...++.+++...
T Consensus       311 ~~~l~~Al~l~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         311 QRVLLDALKLANRT-GF-ISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHHHHHHH-CC-CHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHhhhc-Cc-HHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            99999999987763 21 111   123444555566677888877654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.3e-24  Score=182.51  Aligned_cols=316  Identities=13%  Similarity=0.006  Sum_probs=260.3

Q ss_pred             HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114           57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  136 (395)
                      ..++.....|.++...|++++|+.+++++++...   ..+.+....++..+|.++...|++++|+..+++++.+....  
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~---~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~--   84 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELP---PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--   84 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc---CCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--
Confidence            4455666679999999999999999999988631   11233456688899999999999999999999999987763  


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                      ++.+....++..++.++...|++..|...+.+++.+....  ..+..+.....+..+|.++...|+++.+...+.+++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~  162 (366)
T d1hz4a_          85 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ--HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV  162 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc--ccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            3456677888999999999999999999999999988765  34455566677788999999999999999999999887


Q ss_pred             HHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016114          217 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  296 (395)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  296 (395)
                      ....   .......++..++..+...+++.++...+.++....... +...+....++..++.++...|++++|...+++
T Consensus       163 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  238 (366)
T d1hz4a_         163 LSSY---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRH  238 (366)
T ss_dssp             TTTS---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhh---hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh-cccCchHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            6443   233455677888999999999999999999998876543 223344566778889999999999999999998


Q ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhc
Q 016114          297 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKF  376 (395)
Q Consensus       297 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  376 (395)
                      ++...    ...++.....+..+|.++...|+++ +|...+++++...+..  ...|....++..+|.+|..+|++++|.
T Consensus       239 ~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~  311 (366)
T d1hz4a_         239 TAKPE----FANNHFLQGQWRNIARAQILLGEFE-PAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQ  311 (366)
T ss_dssp             SCCCC----CTTCGGGHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhc----cccchHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence            87643    2334555667788999999999999 9999999999988773  466888999999999999999999999


Q ss_pred             hhhHHHHHHHHHHH
Q 016114          377 PLKKRLSNLRMKYK  390 (395)
Q Consensus       377 ~~~~~a~~~~~~~~  390 (395)
                      ..+++++++.++.+
T Consensus       312 ~~l~~Al~l~~~~~  325 (366)
T d1hz4a_         312 RVLLDALKLANRTG  325 (366)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhhcC
Confidence            99999999987653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.6e-25  Score=182.29  Aligned_cols=284  Identities=15%  Similarity=0.059  Sum_probs=217.1

Q ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 016114           62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  141 (395)
Q Consensus        62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  141 (395)
                      .+..|..+...|++++|+..|+++++.        +|..+.++..+|.++...|++++|+..+.+++++        .|.
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   85 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPD   85 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--------ccc
Confidence            457899999999999999999999975        6777889999999999999999999999999987        345


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchH-----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI-----MENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                      ....+..+|.++...|++++|+..+++++...............     ...........+...+.+.+|...+.+++.+
T Consensus        86 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  165 (323)
T d1fcha_          86 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  165 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999998754321000000000     0000111223344556788899999888875


Q ss_pred             HHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016114          217 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  296 (395)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  296 (395)
                      .     ++. ....++..+|.++...|++++|+..+++++..        +|....++..+|.++...|++++|+.+|++
T Consensus       166 ~-----p~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  231 (323)
T d1fcha_         166 D-----PTS-IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRR  231 (323)
T ss_dssp             S-----TTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             h-----hcc-cccccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHHHH
Confidence            2     122 23457789999999999999999999999873        466778899999999999999999999999


Q ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHHHHHhcchh
Q 016114          297 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSES---EEVMLTLKKVVSYLDKLGRKE  373 (395)
Q Consensus       297 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~  373 (395)
                      ++++.     |++   ..++..+|.++...|+++ +|+..|++++++.....+...   .....++..++.++...|+.+
T Consensus       232 al~~~-----p~~---~~a~~~lg~~~~~~g~~~-~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d  302 (323)
T d1fcha_         232 ALELQ-----PGY---IRSRYNLGISCINLGAHR-EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  302 (323)
T ss_dssp             HHHHC-----TTC---HHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHh-----hcc---HHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHH
Confidence            99853     343   457899999999999999 999999999998765322111   111245677888999899988


Q ss_pred             hhchhhHHHHH
Q 016114          374 EKFPLKKRLSN  384 (395)
Q Consensus       374 ~A~~~~~~a~~  384 (395)
                      .+.....+.+.
T Consensus       303 ~~~~~~~~~l~  313 (323)
T d1fcha_         303 AYGAADARDLS  313 (323)
T ss_dssp             GHHHHHTTCHH
T ss_pred             HHHHHHHhCHH
Confidence            77766666554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.8e-25  Score=181.67  Aligned_cols=286  Identities=16%  Similarity=0.138  Sum_probs=214.8

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      .+..|..++..|++++|+..|+++++.        +|..+.++..+|.++...|++++|+..+.+++++        .|.
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   85 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPD   85 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--------ccc
Confidence            467899999999999999999999874        3455678999999999999999999999999987        466


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCCh-hHHH------HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG-RVGM------AMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~------~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      ....+..+|.++...|++++|...+++++...+........ ....      ........+...+.+.+|...+.+++.+
T Consensus        86 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  165 (323)
T d1fcha_          86 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  165 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            67889999999999999999999999998763221000000 0000      1111222344556788899999998875


Q ss_pred             HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHH
Q 016114          173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  252 (395)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  252 (395)
                      .       |+.. ...++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..|
T Consensus       166 ~-------p~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~  229 (323)
T d1fcha_         166 D-------PTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAY  229 (323)
T ss_dssp             S-------TTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             h-------hccc-ccccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHH
Confidence            3       2221 1345688999999999999999999999875        3455678999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC---ChHHHHHHHHHHHHHHHcCCc
Q 016114          253 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD---SLPVGEALDCLVSIQTRLGED  329 (395)
Q Consensus       253 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~  329 (395)
                      ++++++        +|....++..+|.+|...|++++|+..|++++++.....+..   .......+..++.++...++.
T Consensus       230 ~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~  301 (323)
T d1fcha_         230 RRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS  301 (323)
T ss_dssp             HHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHH--------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCH
Confidence            999984        466678999999999999999999999999999864432111   111123456677788888877


Q ss_pred             hhHHHHHHHHHHHHHHh
Q 016114          330 DTKLLELLKRVLRIQER  346 (395)
Q Consensus       330 ~~~A~~~~~~al~~~~~  346 (395)
                      + .+...-.+.++...+
T Consensus       302 d-~~~~~~~~~l~~l~~  317 (323)
T d1fcha_         302 D-AYGAADARDLSTLLT  317 (323)
T ss_dssp             G-GHHHHHTTCHHHHHH
T ss_pred             H-HHHHHHHhCHHHHHH
Confidence            7 555554444444333

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-20  Score=153.49  Aligned_cols=262  Identities=10%  Similarity=-0.051  Sum_probs=207.1

Q ss_pred             hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCC-hHHHHHHHHHHHHHHHH
Q 016114           55 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYTK  133 (395)
Q Consensus        55 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~  133 (395)
                      .|....++..+|.++...+.+++|+..+++++++        .|....+++..|.++...|+ +++|+..+++++.+   
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~---  107 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---  107 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence            4688899999999999999999999999999998        68888999999999999875 89999999999987   


Q ss_pred             HhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 016114          134 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  213 (395)
Q Consensus       134 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  213 (395)
                           +|....++.++|.++..+|++++|+..+++++++.       |..   ..++.++|.++...|++++|+..++++
T Consensus       108 -----~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-------p~n---~~a~~~~~~~~~~~~~~~~Al~~~~~a  172 (315)
T d2h6fa1         108 -----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-------AKN---YHAWQHRQWVIQEFKLWDNELQYVDQL  172 (315)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             -----HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-------hcc---hHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence                 57777899999999999999999999999999863       222   467799999999999999999999999


Q ss_pred             HHHHHhhhCCCChhHHHHHHHHHHHHHhhhc------HHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCCh
Q 016114          214 LLITEKYKGKEHPSFVTHLLNLAASYSRSKN------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD  287 (395)
Q Consensus       214 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  287 (395)
                      +++        +|....+++++|.++...+.      +++|+..+.+++.+        .|....++..++.++...| .
T Consensus       173 l~~--------~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--------~P~~~~~~~~l~~ll~~~~-~  235 (315)
T d2h6fa1         173 LKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRG-L  235 (315)
T ss_dssp             HHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTC-G
T ss_pred             HHH--------CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--------CCCchHHHHHHHHHHHhcC-h
Confidence            986        45566788999998776654      68899999998874        5666778888988866544 6


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH--cCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 016114          288 KEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR--LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSY  365 (395)
Q Consensus       288 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  365 (395)
                      +++...+++++++.     +++. ....+..++.++..  .++.+ .+...+.+++++.......-+|.....+..++..
T Consensus       236 ~~~~~~~~~~~~l~-----~~~~-~~~~~~~l~~~y~~~~~~~~~-~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~  308 (315)
T d2h6fa1         236 SKYPNLLNQLLDLQ-----PSHS-SPYLIAFLVDIYEDMLENQCD-NKEDILNKALELCEILAKEKDTIRKEYWRYIGRS  308 (315)
T ss_dssp             GGCHHHHHHHHHHT-----TTCC-CHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-----CCcC-CHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            88888888887754     2221 22345556666644  36666 7888999998876654333344444444455444


Q ss_pred             H
Q 016114          366 L  366 (395)
Q Consensus       366 ~  366 (395)
                      +
T Consensus       309 l  309 (315)
T d2h6fa1         309 L  309 (315)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.1e-20  Score=153.93  Aligned_cols=260  Identities=12%  Similarity=0.016  Sum_probs=205.2

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhC-chhHHHHHHHHHHHHHHH
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILEL   91 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~   91 (395)
                      +|+...++..+|.++...+.+++|+..+++++++        .|....+++..|.++...| ++++|+..+++++.+   
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~---  107 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---  107 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence            6899999999999999999999999999999997        3555678999999999887 489999999999987   


Q ss_pred             hcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 016114           92 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  171 (395)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  171 (395)
                           +|....++..+|.++..+|++++|+..+.+++++        +|....++.++|.++...|++++|+..++++++
T Consensus       108 -----~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~  174 (315)
T d2h6fa1         108 -----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK  174 (315)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             -----HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                 6788899999999999999999999999999987        566678999999999999999999999999998


Q ss_pred             HHHhcccCCCCchHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcH
Q 016114          172 VIKDSNYMSLDDSIMENMRIDLAELLHIVGR------GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF  245 (395)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  245 (395)
                      +-       |..   ..++.++|.++...+.      +++|+..+.+++.+        .|....++..++.++...| .
T Consensus       175 ~~-------p~n---~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--------~P~~~~~~~~l~~ll~~~~-~  235 (315)
T d2h6fa1         175 ED-------VRN---NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRG-L  235 (315)
T ss_dssp             HC-------TTC---HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTC-G
T ss_pred             HC-------Ccc---HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--------CCCchHHHHHHHHHHHhcC-h
Confidence            62       222   4567889999888776      46888888888876        3455677888888866544 5


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Q 016114          246 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS  321 (395)
Q Consensus       246 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  321 (395)
                      +++...++.++++.     + .+....++..++.+|..  .++.+.+...+.+++.+.......-+|.....+..++.
T Consensus       236 ~~~~~~~~~~~~l~-----~-~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~  307 (315)
T d2h6fa1         236 SKYPNLLNQLLDLQ-----P-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGR  307 (315)
T ss_dssp             GGCHHHHHHHHHHT-----T-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-----C-CcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            78888888887641     2 23344556677777755  47777888888888887654322223333333434443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.4e-18  Score=140.02  Aligned_cols=230  Identities=12%  Similarity=0.082  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhc
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR   93 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   93 (395)
                      +..+..|...|.+|...|+|++|+..|.+++++..+.  .+.+..+.++..+|.+|...|++++|+..+++++.+.....
T Consensus        34 ~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~  111 (290)
T d1qqea_          34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG  111 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc
Confidence            3347788999999999999999999999999998774  45667889999999999999999999999999999987753


Q ss_pred             CCCChhhhhhHHhHHHHHHH-cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114           94 GTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus        94 ~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                        .......++..+|.++.. .|++++|+.+|++++++....  ...+....++.++|.++...|+|++|+..|++++..
T Consensus       112 --~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         112 --QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             --cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence              455667788999998865 699999999999999988764  334557788999999999999999999999999886


Q ss_pred             HHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh--hhcHHHHHH
Q 016114          173 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--SKNFVEAER  250 (395)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~~~A~~  250 (395)
                      ....   ..........+...+.++...|+++.|...+++++++.....   .......+..+...+..  .+.+++|+.
T Consensus       188 ~~~~---~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~---~sre~~~l~~l~~a~~~~d~e~~~eai~  261 (290)
T d1qqea_         188 SMGN---RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCK  261 (290)
T ss_dssp             TSSC---TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred             Cccc---hhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc---chHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            5432   112334455667889999999999999999998876543221   11112334455555544  345777777


Q ss_pred             HHHHH
Q 016114          251 LLRIC  255 (395)
Q Consensus       251 ~~~~a  255 (395)
                      .|.++
T Consensus       262 ~y~~~  266 (290)
T d1qqea_         262 EFDNF  266 (290)
T ss_dssp             HHTTS
T ss_pred             HHHHH
Confidence            76543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.6e-18  Score=139.68  Aligned_cols=190  Identities=12%  Similarity=0.071  Sum_probs=156.5

Q ss_pred             hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCC
Q 016114          103 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  182 (395)
Q Consensus       103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  182 (395)
                      .+...|.+|...|++++|...|.+++++..+.  .+.+..+.++.++|.+|...|++++|+..+++++++....    ..
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~----~~  112 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR----GQ  112 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TC
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc----cc
Confidence            34455888999999999999999999998774  3556788899999999999999999999999999998864    45


Q ss_pred             chHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 016114          183 DSIMENMRIDLAELLHI-VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  261 (395)
Q Consensus       183 ~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  261 (395)
                      ......++.++|.++.. .|++++|+.+|++++++.....  ..+....++.++|.++..+|++++|+..|++++.....
T Consensus       113 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~--~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~  190 (290)
T d1qqea_         113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG  190 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC--chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCcc
Confidence            56667788999998865 6999999999999999887643  44566788999999999999999999999998874322


Q ss_pred             hhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 016114          262 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       262 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  301 (395)
                      . +.........+...+.++...|++..|...+++++++.
T Consensus       191 ~-~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~  229 (290)
T d1qqea_         191 N-RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (290)
T ss_dssp             C-TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             c-hhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            1 11123334566788999999999999999999988765

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=6.3e-19  Score=140.21  Aligned_cols=214  Identities=11%  Similarity=0.048  Sum_probs=148.4

Q ss_pred             hhhhhcCCCcHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHH
Q 016114            4 GIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYH   83 (395)
Q Consensus         4 ~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   83 (395)
                      +++......++..+.+++.+|.+|...|++++|+..|++++.+     .   |..+.++..+|.++...|++++|+..|+
T Consensus        24 e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l-----~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~   95 (259)
T d1xnfa_          24 QILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-----R---PDMPEVFNYLGIYLTQAGNFDAAYEAFD   95 (259)
T ss_dssp             HHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C---CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-----C---CCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence            4444444567888999999999999999999999999999987     2   3345678999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 016114           84 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV  163 (395)
Q Consensus        84 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  163 (395)
                      +++.+        .|....++.++|.++...|++++|+..++++++.        .|........++..+...+..+.+.
T Consensus        96 ~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~  159 (259)
T d1xnfa_          96 SVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--------DPNDPFRSLWLYLAEQKLDEKQAKE  159 (259)
T ss_dssp             HHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--------ccccHHHHHHHHHHHHHhhhHHHHH
Confidence            99987        5666788999999999999999999999999886        2222234455566666666555444


Q ss_pred             HHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhh
Q 016114          164 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK  243 (395)
Q Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~  243 (395)
                      ........       ..+...........++. ....+.++.+...+......        .+....++.++|.++...|
T Consensus       160 ~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g  223 (259)
T d1xnfa_         160 VLKQHFEK-------SDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AEHLSETNFYLGKYYLSLG  223 (259)
T ss_dssp             HHHHHHHH-------SCCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhhc-------cchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc--------CcccHHHHHHHHHHHHHCC
Confidence            44333322       12222221111111110 01111223333333322222        2455678889999999999


Q ss_pred             cHHHHHHHHHHHHH
Q 016114          244 NFVEAERLLRICLD  257 (395)
Q Consensus       244 ~~~~A~~~~~~a~~  257 (395)
                      ++++|+.+|++++.
T Consensus       224 ~~~~A~~~~~~al~  237 (259)
T d1xnfa_         224 DLDSATALFKLAVA  237 (259)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999999986

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=3.3e-18  Score=135.95  Aligned_cols=228  Identities=15%  Similarity=0.045  Sum_probs=160.4

Q ss_pred             hhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHH
Q 016114           29 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG  108 (395)
Q Consensus        29 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  108 (395)
                      ..++.+.|+..+++++...    ...++..+.+++.+|.+|...|++++|+..|++++.+        .|..+.++..+|
T Consensus        11 ~~~~~e~al~~~~e~l~~~----~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg   78 (259)
T d1xnfa_          11 PTLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLG   78 (259)
T ss_dssp             CCHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhh----hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhc
Confidence            3456677777777665421    2245678889999999999999999999999999997        567788999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHH
Q 016114          109 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN  188 (395)
Q Consensus       109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  188 (395)
                      .++..+|++++|+..|++++.+        +|....++.++|.++...|++++|+..++++++..       |....   
T Consensus        79 ~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~---  140 (259)
T d1xnfa_          79 IYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-------PNDPF---  140 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHH---
T ss_pred             hHHHHHHHHHHhhhhhhHHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-------cccHH---
Confidence            9999999999999999999987        34455689999999999999999999999999862       22222   


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCc
Q 016114          189 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  268 (395)
Q Consensus       189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  268 (395)
                      ....++..+...+..+.+.........     .....+........++. ....+.++.+...+......        .+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~  206 (259)
T d1xnfa_         141 RSLWLYLAEQKLDEKQAKEVLKQHFEK-----SDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AE  206 (259)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHH-----SCCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhc-----cchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc--------Cc
Confidence            234455666666654444433332221     11222222222111211 11233444454444444432        24


Q ss_pred             chHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 016114          269 SISFPMLHLGITLYHLNRDKEAEKLVLEALYI  300 (395)
Q Consensus       269 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  300 (395)
                      ....++..+|.++...|++++|+.+|++++..
T Consensus       207 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         207 HLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            45667889999999999999999999999863

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=5.5e-19  Score=145.89  Aligned_cols=280  Identities=10%  Similarity=-0.081  Sum_probs=206.2

Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHH-------HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCC
Q 016114           23 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL-------VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT   95 (395)
Q Consensus        23 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   95 (395)
                      +.......+..++|+.++++++.+.     |+.+..       ...+...+..+...|++.+|+.++++++..       
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~~-----P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~-------  102 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGAN-----PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-------  102 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh-------
Confidence            3333333444589999999999862     333221       122223333445556688888888888875       


Q ss_pred             CChhhhhhHHhHHHHHHHcCC--hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114           96 ESADLVLPLFSLGSLFIKEGK--AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus        96 ~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                       +|....++..+|.++...++  +++|+..+.+++..       ++..........|.++...+++++|+..+++++.+ 
T Consensus       103 -~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-------~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~-  173 (334)
T d1dcea1         103 -NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-  173 (334)
T ss_dssp             -CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-
T ss_pred             -CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh-------CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc-
Confidence             67777888899988887765  78999999999987       22233334567889999999999999999998874 


Q ss_pred             HhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 016114          174 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  253 (395)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  253 (395)
                            .|..   ..++.++|.++...|++++|+..+.+++.+....        .    .....+...+..+++...+.
T Consensus       174 ------~p~~---~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~----~~~~~~~~l~~~~~a~~~~~  232 (334)
T d1dcea1         174 ------NFSN---YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE--------L----ELVQNAFFTDPNDQSAWFYH  232 (334)
T ss_dssp             ------TCCC---HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH--------H----HHHHHHHHHCSSCSHHHHHH
T ss_pred             ------CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH--------H----HHHHHHHHhcchhHHHHHHH
Confidence                  2332   4567899999999999999999888877764321        1    22333455677788888888


Q ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHH
Q 016114          254 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL  333 (395)
Q Consensus       254 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A  333 (395)
                      +++..        .|.....+..++.++...|++.+|+..+.+++.        .+|....++..+|.++...|+++ +|
T Consensus       233 ~~l~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~~~-eA  295 (334)
T d1dcea1         233 RWLLG--------RAEPLFRCELSVEKSTVLQSELESCKELQELEP--------ENKWCLLTIILLMRALDPLLYEK-ET  295 (334)
T ss_dssp             HHHHS--------CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHCTGGGHH-HH
T ss_pred             HHHHh--------CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--------hCchHHHHHHHHHHHHHHCCCHH-HH
Confidence            88762        334444556788889999999999999888764        56888899999999999999999 99


Q ss_pred             HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 016114          334 LELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL  369 (395)
Q Consensus       334 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  369 (395)
                      +.+|++++++        +|.....+..|+..+...
T Consensus       296 ~~~~~~ai~l--------dP~~~~y~~~L~~~~~~e  323 (334)
T d1dcea1         296 LQYFSTLKAV--------DPMRAAYLDDLRSKFLLE  323 (334)
T ss_dssp             HHHHHHHHHH--------CGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--------CcccHHHHHHHHHHHhHh
Confidence            9999999986        455566777787777643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=5.9e-19  Score=145.72  Aligned_cols=261  Identities=10%  Similarity=-0.003  Sum_probs=197.3

Q ss_pred             HHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHH----------HHHcCChHHHHHHHHHHHHHHHHHhCC
Q 016114           68 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL----------FIKEGKAVDAESVFSRILKIYTKVYGE  137 (395)
Q Consensus        68 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~A~~~~~~al~~~~~~~~~  137 (395)
                      .....+..++|+..+++++..        .|+...++...+.+          +...|++++|+.++++++..       
T Consensus        38 ~~~~~~~~~~al~~~~~~l~~--------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~-------  102 (334)
T d1dcea1          38 KRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-------  102 (334)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHhcccccHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh-------
Confidence            333444458999999999986        45555555444444          44455577888888888765       


Q ss_pred             CChhHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114          138 NDGRVGMAMCSLAHAKCANGN--AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  215 (395)
Q Consensus       138 ~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  215 (395)
                       +|....++..+|.++...++  +++|+..++++++..       +.  .........|.++...+++++|+..+++++.
T Consensus       103 -~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~--~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~  172 (334)
T d1dcea1         103 -NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-------ER--NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT  172 (334)
T ss_dssp             -CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-------TT--CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred             -CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-------ch--hhhhhhhHHHHHHHhccccHHHHHHHHHHHH
Confidence             56666778888888887764  899999999999862       22  2222345678899999999999999998876


Q ss_pred             HHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHH
Q 016114          216 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  295 (395)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  295 (395)
                      +        +|....++.++|.++...|++++|...+++++.+....            ......+...+..+++...+.
T Consensus       173 ~--------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~a~~~~~  232 (334)
T d1dcea1         173 R--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE------------LELVQNAFFTDPNDQSAWFYH  232 (334)
T ss_dssp             T--------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH------------HHHHHHHHHHCSSCSHHHHHH
T ss_pred             c--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH------------HHHHHHHHHhcchhHHHHHHH
Confidence            4        56667889999999999999999988888877754321            223344566788888999888


Q ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhh
Q 016114          296 EALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEK  375 (395)
Q Consensus       296 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  375 (395)
                      +++...     +..+   ..+..++.++...+++. +|+..+.+++        ..+|....++..+|.++...|++++|
T Consensus       233 ~~l~~~-----~~~~---~~~~~l~~~~~~~~~~~-~a~~~~~~~~--------~~~p~~~~~~~~l~~~~~~~~~~~eA  295 (334)
T d1dcea1         233 RWLLGR-----AEPL---FRCELSVEKSTVLQSEL-ESCKELQELE--------PENKWCLLTIILLMRALDPLLYEKET  295 (334)
T ss_dssp             HHHHSC-----CCCS---SSCCCCHHHHHHHHHHH-HHHHHHHHHC--------TTCHHHHHHHHHHHHHHCTGGGHHHH
T ss_pred             HHHHhC-----cchh---hHHHHHHHHHHHHhhHH-HHHHHHHHHH--------hhCchHHHHHHHHHHHHHHCCCHHHH
Confidence            887632     2222   23556788888888888 8888888876        46789999999999999999999999


Q ss_pred             chhhHHHHHHHHHHH
Q 016114          376 FPLKKRLSNLRMKYK  390 (395)
Q Consensus       376 ~~~~~~a~~~~~~~~  390 (395)
                      +.+|++++++.|...
T Consensus       296 ~~~~~~ai~ldP~~~  310 (334)
T d1dcea1         296 LQYFSTLKAVDPMRA  310 (334)
T ss_dssp             HHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHCcccH
Confidence            999999999987543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.4e-15  Score=129.05  Aligned_cols=233  Identities=13%  Similarity=0.023  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHc
Q 016114           35 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE  114 (395)
Q Consensus        35 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~  114 (395)
                      +|+++|++|+++-        |+.+.++.++|.++..+|++.+|   |++++..        +|..+......+.+..  
T Consensus         4 eA~q~~~qA~~l~--------p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--------dp~~a~~~~~e~~Lw~--   62 (497)
T d1ya0a1           4 QSAQYLRQAEVLK--------ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--------DLEYALDKKVEQDLWN--   62 (497)
T ss_dssp             HHHHHHHHHHHHH--------GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--------CHHHHHHHTHHHHHHH--
T ss_pred             HHHHHHHHHHHcC--------CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--------ChhhHHHHhHHHHHHH--
Confidence            7899999999874        44456678889999999999876   7787765        4555444433332221  


Q ss_pred             CChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHH
Q 016114          115 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA  194 (395)
Q Consensus       115 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la  194 (395)
                      ..|..+++.+++.....   ...+....  ....++.++...+.|+.|+..+.+++.+.          +.....+.++|
T Consensus        63 ~~y~~~ie~~r~~~k~~---~~~~~~~~--~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~----------~~~~~~~~~lg  127 (497)
T d1ya0a1          63 HAFKNQITTLQGQAKNR---ANPNRSEV--QANLSLFLEAASGFYTQLLQELCTVFNVD----------LPCRVKSSQLG  127 (497)
T ss_dssp             HHTHHHHHHHHHHHSCS---SCTTTTHH--HHHHHHHHHHHHHHHHHHHHHHTC--------------------------
T ss_pred             HHHHHHHHHHHHhcccc---cCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------hhhHHHHHHhH
Confidence            12444555555443210   00111111  11223444444555555555555554431          22244568899


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHH
Q 016114          195 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM  274 (395)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  274 (395)
                      ..+...|++++|...+.+++...          ...++.++|.++...|++++|+.+|++|+.+        .|....++
T Consensus       128 ~~~~~~~~~~~A~~~~~~al~~~----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~~  189 (497)
T d1ya0a1         128 IISNKQTHTSAIVKPQSSSCSYI----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPY  189 (497)
T ss_dssp             ---------------CCHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHHH
Confidence            99999999999999999887652          2357889999999999999999999999985        57888899


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCc
Q 016114          275 LHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED  329 (395)
Q Consensus       275 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  329 (395)
                      ..||.++...|++.+|+.+|.+++...        +....++.+|+.++.+..+.
T Consensus       190 ~~Lg~~~~~~~~~~~A~~~y~ral~~~--------~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         190 NQLAILASSKGDHLTTIFYYCRSIAVK--------FPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHSSS--------BCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999998743        23345778888888765543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=131.41  Aligned_cols=233  Identities=10%  Similarity=0.018  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHC
Q 016114           77 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN  156 (395)
Q Consensus        77 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  156 (395)
                      +|.++|++|+.+        .|+.+.++.++|.++..+|++++|   |++++..        +|..+......+.+..  
T Consensus         4 eA~q~~~qA~~l--------~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--------dp~~a~~~~~e~~Lw~--   62 (497)
T d1ya0a1           4 QSAQYLRQAEVL--------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--------DLEYALDKKVEQDLWN--   62 (497)
T ss_dssp             HHHHHHHHHHHH--------HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--------CHHHHHHHTHHHHHHH--
T ss_pred             HHHHHHHHHHHc--------CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--------ChhhHHHHhHHHHHHH--
Confidence            789999999997        577788899999999999999876   7888765        4555444433332221  


Q ss_pred             CCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHH
Q 016114          157 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA  236 (395)
Q Consensus       157 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  236 (395)
                      ..+..+++.+++..+..     ..++......  ..++.+....+.|+.|+..+.+++.+        .+.....+.++|
T Consensus        63 ~~y~~~ie~~r~~~k~~-----~~~~~~~~~~--~~~~~l~~a~~~Y~~ai~~l~~~~~l--------~~~~~~~~~~lg  127 (497)
T d1ya0a1          63 HAFKNQITTLQGQAKNR-----ANPNRSEVQA--NLSLFLEAASGFYTQLLQELCTVFNV--------DLPCRVKSSQLG  127 (497)
T ss_dssp             HHTHHHHHHHHHHHSCS-----SCTTTTHHHH--HHHHHHHHHHHHHHHHHHHHTC------------------------
T ss_pred             HHHHHHHHHHHHhcccc-----cCccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCC--------ChhhHHHHHHhH
Confidence            11344555555444311     1122222111  22344444455555555555544432        345566788999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Q 016114          237 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEAL  316 (395)
Q Consensus       237 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  316 (395)
                      ..+...|++++|...+.+++...          ...++.++|.++...|++++|+.+|++|+.+.        |.....+
T Consensus       128 ~~~~~~~~~~~A~~~~~~al~~~----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--------P~~~~~~  189 (497)
T d1ya0a1         128 IISNKQTHTSAIVKPQSSSCSYI----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPY  189 (497)
T ss_dssp             ---------------CCHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCchHHH
Confidence            99999999999999999888742          23578899999999999999999999999864        5555679


Q ss_pred             HHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcch
Q 016114          317 DCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRK  372 (395)
Q Consensus       317 ~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  372 (395)
                      +.||.++...|+.. +|+.+|.+++.+     .   |....++.+|+.++.+..+.
T Consensus       190 ~~Lg~~~~~~~~~~-~A~~~y~ral~~-----~---~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         190 NQLAILASSKGDHL-TTIFYYCRSIAV-----K---FPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             HHHHHHHHHTTCHH-HHHHHHHHHHSS-----S---BCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCCHH-HHHHHHHHHHhC-----C---CCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999 999999999853     1   22244566666666554443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.3e-14  Score=104.95  Aligned_cols=136  Identities=14%  Similarity=0.130  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 016114           62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  141 (395)
Q Consensus        62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  141 (395)
                      +.+.|..+...|+|++|+..|.++           .+..+.+++++|.+|..+|++++|+..|++++++        +|.
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i-----------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~   68 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAV-----------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKH   68 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS-----------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhc-----------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hhh
Confidence            446699999999999999988652           1223467899999999999999999999999987        566


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccC------CCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114          142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM------SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  215 (395)
Q Consensus       142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  215 (395)
                      .+.++.++|.++..+|++++|+..|++++...+.....      .........++.++|.++...|++++|++.+.+++.
T Consensus        69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            67899999999999999999999999999864332100      001122356778999999999999999999998887


Q ss_pred             H
Q 016114          216 I  216 (395)
Q Consensus       216 ~  216 (395)
                      +
T Consensus       149 ~  149 (192)
T d1hh8a_         149 M  149 (192)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3e-14  Score=106.30  Aligned_cols=135  Identities=13%  Similarity=0.123  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCCh
Q 016114           19 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA   98 (395)
Q Consensus        19 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   98 (395)
                      .++..|..+...|+|++|+..|.++        .+.+   ..+++++|.++..+|++++|+..|++++++        +|
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i--------~~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp   67 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAV--------QDPH---SRICFNIGCMYTILKNMTEAEKAFTRSINR--------DK   67 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS--------SSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhc--------CCCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hh
Confidence            3456799999999999999998753        1222   346889999999999999999999999997        67


Q ss_pred             hhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHH-------hC-CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114           99 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV-------YG-ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  170 (395)
Q Consensus        99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  170 (395)
                      ..+.++.++|.++..+|++++|+..|++++...+..       .+ ........+++++|.++...|++++|+..+.+++
T Consensus        68 ~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~  147 (192)
T d1hh8a_          68 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  147 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            788999999999999999999999999998753211       00 0112346788999999999999999999999988


Q ss_pred             HH
Q 016114          171 RV  172 (395)
Q Consensus       171 ~~  172 (395)
                      .+
T Consensus       148 ~~  149 (192)
T d1hh8a_         148 SM  149 (192)
T ss_dssp             TT
T ss_pred             hc
Confidence            75

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.4e-13  Score=97.52  Aligned_cols=131  Identities=13%  Similarity=0.071  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcC
Q 016114           15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG   94 (395)
Q Consensus        15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   94 (395)
                      ..+..+...|..++..|+|++|+.+|++++++        +|....++..+|.++...|++++|+..|++++++      
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~------   73 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------   73 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH------
Confidence            45677889999999999999999999999987        2455778999999999999999999999999997      


Q ss_pred             CCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH--HHCCCHHHHHHHHHHH
Q 016114           95 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK--CANGNAEEAVELYKKA  169 (395)
Q Consensus        95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~a  169 (395)
                        .|....++..+|.++..+|++++|+..+++++.+     .++++   .+...++.+.  ...+.+++|+......
T Consensus        74 --~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~-----~p~~~---~~~~~l~~~~~~~~~~~~~~a~~~~~~~  140 (159)
T d1a17a_          74 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDK---DAKMKYQECNKIVKQKAFERAIAGDEHK  140 (159)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH---HHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence              5777889999999999999999999999999987     33333   3344444433  3334455555543333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.52  E-value=5.5e-13  Score=95.92  Aligned_cols=138  Identities=9%  Similarity=0.102  Sum_probs=106.6

Q ss_pred             HHHHHHHHH--HHHHHhhhcHHHHHHHHHHHHHHHHHhcCc----ChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114           15 LLDAILLHM--GSMYSTLENYEKSMLVYQRVINVLESRYGK----TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   88 (395)
Q Consensus        15 ~~~~~~~~l--~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   88 (395)
                      +++.++..+  |..++..|+|++|+..|++++++.+.....    ..+..+.++.++|.+|..+|++++|...+++++.+
T Consensus         5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~   84 (156)
T d2hr2a1           5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   84 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc
Confidence            455666555  888889999999999999999998765321    13356778999999999999999999999999999


Q ss_pred             HHHhcCCC---ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 016114           89 LELNRGTE---SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK  153 (395)
Q Consensus        89 ~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  153 (395)
                      ..+.....   .+....+++++|.+|..+|++++|+..|++++++.++..+ ..+........++..+
T Consensus        85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~-~~~~~~~~~~~~~~~l  151 (156)
T d2hr2a1          85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG-ETPGKERMMEVAIDRI  151 (156)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS-CCTTHHHHHHHHHHHH
T ss_pred             ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc-hHHHHHHHHHHHHHHH
Confidence            87754322   3455668899999999999999999999999999887543 3344444444444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.6e-12  Score=93.87  Aligned_cols=100  Identities=14%  Similarity=0.098  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhC
Q 016114           57 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  136 (395)
Q Consensus        57 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  136 (395)
                      ..+..+...|..++..|+|++|+..|++++.+        +|....++.++|.++...|++++|+..|++++++      
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~------   73 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------   73 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH------
Confidence            34556777899999999999999999999997        5778899999999999999999999999999987      


Q ss_pred             CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          137 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       137 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                        +|....++..+|.++...|++++|+..+++++.+
T Consensus        74 --~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~  107 (159)
T d1a17a_          74 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV  107 (159)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence              4666688999999999999999999999999986

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.51  E-value=1.7e-12  Score=93.22  Aligned_cols=119  Identities=18%  Similarity=0.092  Sum_probs=96.4

Q ss_pred             HHHHHHHH--HHHHHhhCchhHHHHHHHHHHHHHHHhcCCC----ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHH
Q 016114           58 LVTSLLGM--AKVLGSIGRAKKAVEIYHRVITILELNRGTE----SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  131 (395)
Q Consensus        58 ~~~~~~~l--~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  131 (395)
                      .+.++..+  |..++..|+|++|+..|++++++........    .+..+.++.++|.+|..+|++++|+..+++++.+.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~   85 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   85 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence            34444444  7888899999999999999999976643211    12346789999999999999999999999999998


Q ss_pred             HHHhCCC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc
Q 016114          132 TKVYGEN---DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  176 (395)
Q Consensus       132 ~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  176 (395)
                      ++.....   .+....+++++|.+|..+|++++|+..|++++++.++.
T Consensus        86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            8763322   23456678999999999999999999999999998874

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.2e-13  Score=92.56  Aligned_cols=97  Identities=13%  Similarity=0.074  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   97 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   97 (395)
                      .-+...|..++..|++++|+..|+++++.        .|....++..+|.++...|++++|+..+.+++.+        .
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~   67 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------K   67 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------c
Confidence            34677899999999999999999999986        2444678999999999999999999999999987        5


Q ss_pred             hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      |....++.++|.++..+|++++|+..|++++++
T Consensus        68 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          68 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            677789999999999999999999999999976

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.2e-13  Score=90.31  Aligned_cols=95  Identities=18%  Similarity=0.154  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 016114           62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  141 (395)
Q Consensus        62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  141 (395)
                      +...|..++..|++++|+..|.+++..        .|..+.++..+|.++...|++++|+..+.+++.+        .|.
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~   69 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KPD   69 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------ccc
Confidence            556799999999999999999999987        6777889999999999999999999999999987        455


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          142 VGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      ...++.++|.++..+|++++|+..|++++++
T Consensus        70 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          70 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            5678999999999999999999999999974

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-12  Score=95.43  Aligned_cols=131  Identities=18%  Similarity=0.212  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcC-------hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI   88 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   88 (395)
                      .+..+...|..++..|+|++|+..|++++..........       .+....++.++|.+|...|++++|+..+++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            466778899999999999999999999999865432222       1244567788999999999999999999999987


Q ss_pred             HHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 016114           89 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA  162 (395)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  162 (395)
                              +|....++..+|.++..+|++++|+..|++++.+     .|+++   .+...++.+....+...+.
T Consensus        92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-----~P~n~---~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNK---AAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCH---HHHHHHHHHHHHHHHHHHH
T ss_pred             --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHHHHHHH
Confidence                    5777889999999999999999999999999987     33343   4556666666655555443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.3e-12  Score=89.01  Aligned_cols=104  Identities=14%  Similarity=0.104  Sum_probs=91.7

Q ss_pred             hhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114          102 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  181 (395)
Q Consensus       102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  181 (395)
                      ..+..+|..++..|+|++|+.+|.+++++        +|....++.++|.+|..+|++++|+..+++++++....   ..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~---~~   73 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN---RE   73 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS---TT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc---HH
Confidence            45668999999999999999999999987        45556789999999999999999999999999988763   34


Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                      .....+.++..+|.++...+++++|+.+|++++..
T Consensus        74 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            45667788999999999999999999999999874

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5e-12  Score=87.25  Aligned_cols=105  Identities=9%  Similarity=0.156  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114           59 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        59 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      +..+..+|..++..|+|++|+.+|.+++++        +|....++.++|.+|..+|++++|+..+++++++.+... ..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-~~   74 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-ED   74 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH-HH
Confidence            345668899999999999999999999997        566778999999999999999999999999999876642 23


Q ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 016114          139 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  172 (395)
Q Consensus       139 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  172 (395)
                      .+..+.++..+|.++...+++++|+.+|++++..
T Consensus        75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            4557789999999999999999999999999874

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.46  E-value=9.7e-11  Score=92.37  Aligned_cols=222  Identities=15%  Similarity=0.169  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHh----hCchhHHHHHHHHHHHHHHHh
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELN   92 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~   92 (395)
                      +.+++.+|..+...+++++|+.+|+++.+.       +   ...++..||.+|..    ..++..|..+++.+...    
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-------g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~----   67 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL-------K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----   67 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc----
Confidence            457889999999999999999999999653       1   23578889999987    56888888888887653    


Q ss_pred             cCCCChhhhhhHHhHHHHHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCHHHHHH
Q 016114           93 RGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVE  164 (395)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~  164 (395)
                            ....+...+|.++..    ..+.+.|...++++...       ..+   .+...++..+..    ......|..
T Consensus        68 ------~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-------g~~---~a~~~l~~~~~~~~~~~~~~~~a~~  131 (265)
T d1ouva_          68 ------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------KYA---EGCASLGGIYHDGKVVTRDFKKAVE  131 (265)
T ss_dssp             ------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             ------cccchhhccccccccccccchhhHHHHHHHhhhhhh-------hhh---hHHHhhcccccCCCcccchhHHHHH
Confidence                  233456677777764    46778888888888653       122   345556666664    455677777


Q ss_pred             HHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH
Q 016114          165 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  240 (395)
Q Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  240 (395)
                      .+.+....         ..   ...+..+|.++...    .+...+..+++.+.+.          ....+..++|.+|.
T Consensus       132 ~~~~~~~~---------~~---~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~A~~~lg~~y~  189 (265)
T d1ouva_         132 YFTKACDL---------ND---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYH  189 (265)
T ss_dssp             HHHHHHHT---------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH
T ss_pred             Hhhhhhcc---------cc---cchhhhhhhhhccCCCcccccccchhhhhccccc----------cccccccchhhhcc
Confidence            77665442         11   23457789988873    3456666666665542          12457788999988


Q ss_pred             h----hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh----cCChHHHHHHHHHHHHH
Q 016114          241 R----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYI  300 (395)
Q Consensus       241 ~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  300 (395)
                      .    ..++++|+.+|+++.+.       .   ...++++||.+|..    ..++++|.++|++|...
T Consensus       190 ~g~~~~~d~~~A~~~~~~aa~~-------g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~  247 (265)
T d1ouva_         190 HGEGATKNFKEALARYSKACEL-------E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  247 (265)
T ss_dssp             HTCSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             cCcccccchhhhhhhHhhhhcc-------c---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence            7    67899999999999772       2   34678899999986    44899999999999774

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.46  E-value=1.9e-10  Score=90.66  Aligned_cols=221  Identities=16%  Similarity=0.131  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHH----cCChHHHHHHHHHHHHHHHHHh
Q 016114           60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVY  135 (395)
Q Consensus        60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~  135 (395)
                      .+++.+|..+...+++.+|+++|+++.+.          ....+...||.+|..    ..++..|..++..+...     
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-----   67 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----   67 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-----
Confidence            47889999999999999999999998653          235678899999987    66888899888887653     


Q ss_pred             CCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHH----cCChHHHH
Q 016114          136 GENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGR  207 (395)
Q Consensus       136 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~  207 (395)
                        .++   .+...+|.++..    ..+.+.|...++++.+.       +.     ..+...++..+..    ......+.
T Consensus        68 --~~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-------g~-----~~a~~~l~~~~~~~~~~~~~~~~a~  130 (265)
T d1ouva_          68 --NYS---NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------KY-----AEGCASLGGIYHDGKVVTRDFKKAV  130 (265)
T ss_dssp             --TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC-----HHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             --ccc---chhhccccccccccccchhhHHHHHHHhhhhhh-------hh-----hhHHHhhcccccCCCcccchhHHHH
Confidence              233   345667777664    57889999999988762       11     1233556666664    33455565


Q ss_pred             HHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh----hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh
Q 016114          208 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH  283 (395)
Q Consensus       208 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  283 (395)
                      ..+.+....          .....+..+|.++..    ..+...+..+++.+.+          .....+..++|.+|..
T Consensus       131 ~~~~~~~~~----------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~A~~~lg~~y~~  190 (265)
T d1ouva_         131 EYFTKACDL----------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD----------LKDSPGCFNAGNMYHH  190 (265)
T ss_dssp             HHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHH
T ss_pred             HHhhhhhcc----------cccchhhhhhhhhccCCCcccccccchhhhhcccc----------ccccccccchhhhccc
Confidence            555554331          223457788888886    4566777777777765          2235678899999887


Q ss_pred             ----cCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----cCCchhHHHHHHHHHHHH
Q 016114          284 ----LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR----LGEDDTKLLELLKRVLRI  343 (395)
Q Consensus       284 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~al~~  343 (395)
                          ..++++|+.+|+++.+.       +++   .+++.||.+|..    ..+++ +|..+|++|.+.
T Consensus       191 g~~~~~d~~~A~~~~~~aa~~-------g~~---~a~~~LG~~y~~G~g~~~n~~-~A~~~~~kAa~~  247 (265)
T d1ouva_         191 GEGATKNFKEALARYSKACEL-------ENG---GGCFNLGAMQYNGEGVTRNEK-QAIENFKKGCKL  247 (265)
T ss_dssp             TCSSCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHTTSSSSCCST-THHHHHHHHHHH
T ss_pred             CcccccchhhhhhhHhhhhcc-------cCH---HHHHHHHHHHHcCCCCccCHH-HHHHHHHHHHHC
Confidence                67899999999998762       333   467899999986    33677 999999999874

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.8e-12  Score=91.73  Aligned_cols=133  Identities=12%  Similarity=0.061  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCC-----chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 016114          142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD-----DSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  216 (395)
Q Consensus       142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (395)
                      .+..+...|..++..|++++|+..|++++.+..........     ......++.++|.+|...|++++|+.++++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            35567789999999999999999999999986543111111     1234566788999999999999999999999986


Q ss_pred             HHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHH
Q 016114          217 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA  290 (395)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  290 (395)
                              +|....++..+|.++..+|++++|+..|++++.+        +|....+...++.+....+...+.
T Consensus        92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence                    3556678899999999999999999999999884        344555667777776666555443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.44  E-value=5.4e-12  Score=91.78  Aligned_cols=141  Identities=18%  Similarity=0.281  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcC-------hHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHH
Q 016114           15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT   87 (395)
Q Consensus        15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   87 (395)
                      ..+..+...|..++..|+|.+|+..|.+++..........       .+....++.++|.+|..+|++++|+..+++++.
T Consensus        13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~   92 (168)
T d1kt1a1          13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG   92 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence            4567788999999999999999999999998765433221       234566788899999999999999999999998


Q ss_pred             HHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHH-HHHHH
Q 016114           88 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE-AVELY  166 (395)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~  166 (395)
                      +        +|....+++.+|.++..+|++++|+..|.+++.+        +|....+...++.+....+.+.+ ....+
T Consensus        93 l--------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e~~kk~~  156 (168)
T d1kt1a1          93 L--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNERDRRTY  156 (168)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c--------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            7        5777899999999999999999999999999976        34444566667777665554443 33444


Q ss_pred             HHHHH
Q 016114          167 KKALR  171 (395)
Q Consensus       167 ~~a~~  171 (395)
                      .+..+
T Consensus       157 ~~~f~  161 (168)
T d1kt1a1         157 ANMFK  161 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            44333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.42  E-value=3.1e-12  Score=93.33  Aligned_cols=129  Identities=14%  Similarity=0.165  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcC--------cChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHH
Q 016114           16 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG--------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT   87 (395)
Q Consensus        16 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   87 (395)
                      .+..+...|..++..|+|.+|+..|.+++........        ...|..+.++.++|.++...|++++|+..+.++++
T Consensus        26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~  105 (169)
T d1ihga1          26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  105 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence            4455678899999999999999999999987543211        12456788899999999999999999999999998


Q ss_pred             HHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHH
Q 016114           88 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE  160 (395)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  160 (395)
                      +        +|..+.+++.+|.++..+|++++|+..|++++++     .+++   ..+...++.+........
T Consensus       106 ~--------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-----~p~n---~~~~~~l~~~~~~l~~~~  162 (169)
T d1ihga1         106 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-----APED---KAIQAELLKVKQKIKAQK  162 (169)
T ss_dssp             T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHHHHHH
T ss_pred             h--------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHHH
Confidence            6        6778899999999999999999999999999997     2333   345555666655444333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.42  E-value=2e-12  Score=92.40  Aligned_cols=108  Identities=13%  Similarity=0.159  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcCh--------HHHHHHHHHHHHHHHhhCchhHHHHHHHHHH
Q 016114           15 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS--------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI   86 (395)
Q Consensus        15 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   86 (395)
                      ..+..+...|..++..|+|.+|+..|++++...........        +....++.++|.+|..+|++++|+..+++++
T Consensus        15 ~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al   94 (153)
T d2fbna1          15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL   94 (153)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccc
Confidence            34566788999999999999999999999987644322221        2345678899999999999999999999999


Q ss_pred             HHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           87 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      .+        +|....+++.+|.++..+|++++|+..|++++++
T Consensus        95 ~~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          95 KI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cc--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            87        6777899999999999999999999999999988

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.2e-12  Score=98.97  Aligned_cols=100  Identities=19%  Similarity=0.159  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCC
Q 016114           60 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  139 (395)
Q Consensus        60 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  139 (395)
                      ..+...|..++..|+|++|+..|++++.+        .|..+.++.++|.+|...|++++|+..|++++++        +
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--------~   68 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------D   68 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------C
Confidence            34667899999999999999999999997        5777899999999999999999999999999876        5


Q ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 016114          140 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  175 (395)
Q Consensus       140 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  175 (395)
                      |....++.++|.+|..+|++++|+..|++++++...
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            666788999999999999999999999999998764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.40  E-value=1.7e-12  Score=87.22  Aligned_cols=93  Identities=15%  Similarity=0.042  Sum_probs=85.5

Q ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChh
Q 016114           62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  141 (395)
Q Consensus        62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  141 (395)
                      .+.+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+.++++++++        +|.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   82 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK   82 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------ccc
Confidence            467899999999999999999999987        5677899999999999999999999999999997        566


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 016114          142 VGMAMCSLAHAKCANGNAEEAVELYKKAL  170 (395)
Q Consensus       142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~  170 (395)
                      ...++..+|.+|...|++++|++.+++.+
T Consensus        83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            67889999999999999999999999875

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=1.2e-12  Score=99.04  Aligned_cols=100  Identities=16%  Similarity=0.151  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCC
Q 016114           18 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES   97 (395)
Q Consensus        18 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   97 (395)
                      ..+...|..++..|+|++|+.+|++++.+.        |....++.++|.+|...|++++|+..|++++.+        .
T Consensus         5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--------p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--------~   68 (201)
T d2c2la1           5 QELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------D   68 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------C
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------C
Confidence            446789999999999999999999999872        344678999999999999999999999999876        6


Q ss_pred             hhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 016114           98 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  133 (395)
Q Consensus        98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  133 (395)
                      |....++.++|.+|..+|++++|+..|++++.+.+.
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            778889999999999999999999999999998654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.38  E-value=2.1e-12  Score=86.82  Aligned_cols=93  Identities=12%  Similarity=0.043  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChh
Q 016114           20 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD   99 (395)
Q Consensus        20 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   99 (395)
                      .+.+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..+++++++        +|.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   82 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK   82 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------ccc
Confidence            467899999999999999999999986        2445678999999999999999999999999998        677


Q ss_pred             hhhhHHhHHHHHHHcCChHHHHHHHHHHH
Q 016114          100 LVLPLFSLGSLFIKEGKAVDAESVFSRIL  128 (395)
Q Consensus       100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al  128 (395)
                      ...++..+|.+|...|++++|++.+++.+
T Consensus        83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            88999999999999999999999999875

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=3.6e-10  Score=91.09  Aligned_cols=233  Identities=16%  Similarity=0.137  Sum_probs=158.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHH-------HHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 016114           76 KKAVEIYHRVITILELNRGTESADLVLPLFSLGS-------LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS  148 (395)
Q Consensus        76 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  148 (395)
                      +.+...|++|+...        |.....+...+.       .....|....+...++++..++++......|.....+..
T Consensus        33 ~Rv~~vyerAl~~~--------~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~  104 (308)
T d2onda1          33 KRVMFAYEQCLLVL--------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA  104 (308)
T ss_dssp             HHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            44666778887753        222233333333       333344444444444444444444332223444456788


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhH
Q 016114          149 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF  228 (395)
Q Consensus       149 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  228 (395)
                      .+.+....|++++|...|++++..       .+.+.  ..++...+......|+++.|...|++++..        .|..
T Consensus       105 ya~~~~~~~~~~~a~~i~~~~l~~-------~~~~~--~~~w~~~~~~~~~~~~~~~ar~i~~~al~~--------~~~~  167 (308)
T d2onda1         105 YADYEESRMKYEKVHSIYNRLLAI-------EDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKARED--------ARTR  167 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTS-------SSSCT--HHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--------TTCC
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHH-------hcCCh--HHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCc
Confidence            899999999999999999999863       22222  234567788888999999999999998763        2223


Q ss_pred             HHHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Q 016114          229 VTHLLNLAASY-SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  307 (395)
Q Consensus       229 ~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  307 (395)
                      ...+...+... ...|+.+.|..+|++++..        .|.....+...+..+...|+++.|..+|++++...     +
T Consensus       168 ~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--------~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~-----~  234 (308)
T d2onda1         168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-----S  234 (308)
T ss_dssp             THHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-----S
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----C
Confidence            34455666654 3468999999999999874        34456677888999999999999999999998743     3


Q ss_pred             CChH-HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhc
Q 016114          308 DSLP-VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQERE  347 (395)
Q Consensus       308 ~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~  347 (395)
                      .+|. ....+......-...|+.+ .+...++++.+.+...
T Consensus       235 ~~~~~~~~iw~~~~~fE~~~G~~~-~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         235 LPPEKSGEIWARFLAFESNIGDLA-SILKVEKRRFTAFREE  274 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHTTTT
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHCccc
Confidence            3332 2345566666777889999 9999999998887653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.37  E-value=1.2e-11  Score=89.84  Aligned_cols=138  Identities=13%  Similarity=0.089  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC-------ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 016114          187 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-------HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  259 (395)
Q Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  259 (395)
                      +..+...|..++..|++.+|+..|.+++.+........       .+....++.++|.+|..+|++++|+..+++++.+ 
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-   93 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-   93 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-
Confidence            34557789999999999999999999998765433221       1234567889999999999999999999999984 


Q ss_pred             HHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q 016114          260 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR  339 (395)
Q Consensus       260 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~  339 (395)
                             +|....++..+|.++..+|++++|+..|++++.+.     |+++.   +...++.+....+...+.....|.+
T Consensus        94 -------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-----P~n~~---~~~~l~~~~~~~~~~~e~~kk~~~~  158 (168)
T d1kt1a1          94 -------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-----PQNKA---ARLQIFMCQKKAKEHNERDRRTYAN  158 (168)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TTCHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                   57778899999999999999999999999998753     45543   4556666665555443233444443


Q ss_pred             H
Q 016114          340 V  340 (395)
Q Consensus       340 a  340 (395)
                      .
T Consensus       159 ~  159 (168)
T d1kt1a1         159 M  159 (168)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.36  E-value=1.9e-11  Score=87.25  Aligned_cols=126  Identities=13%  Similarity=0.054  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCC------chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 016114          142 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD------DSIMENMRIDLAELLHIVGRGQEGRELLEECLL  215 (395)
Q Consensus       142 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  215 (395)
                      .+..+...|..++..|+|.+|+..|++++.+..........      .+....++.++|.+|..+|++++|+..+++++.
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            34556778999999999999999999999876543111100      112345778999999999999999999999998


Q ss_pred             HHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh
Q 016114          216 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH  283 (395)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  283 (395)
                      +        +|....+++++|.++..+|++++|+..|++++++        .|....+...++.+...
T Consensus        96 ~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          96 I--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHH
T ss_pred             c--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH
Confidence            6        4566789999999999999999999999999985        34555555666655443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=1e-09  Score=88.32  Aligned_cols=233  Identities=13%  Similarity=0.017  Sum_probs=158.6

Q ss_pred             cHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHH-------HHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhH
Q 016114           32 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK-------VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL  104 (395)
Q Consensus        32 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  104 (395)
                      ..+.+...|++|+....     .++.   .+...+.       .....|....+...++++..++++......|.....+
T Consensus        31 ~~~Rv~~vyerAl~~~~-----~~~~---lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~  102 (308)
T d2onda1          31 ITKRVMFAYEQCLLVLG-----HHPD---IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY  102 (308)
T ss_dssp             HHHHHHHHHHHHHHHHT-----TCHH---HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred             hHHHHHHHHHHHHHHCC-----CCHH---HHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHH
Confidence            35667778899988642     2333   2333332       3333344434444444444444433322345555678


Q ss_pred             HhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCch
Q 016114          105 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS  184 (395)
Q Consensus       105 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  184 (395)
                      ...+.+....|+++.|...|++++..     .  +.....++...+......|+++.|...|+++++.       .+...
T Consensus       103 ~~ya~~~~~~~~~~~a~~i~~~~l~~-----~--~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~-------~~~~~  168 (308)
T d2onda1         103 FAYADYEESRMKYEKVHSIYNRLLAI-----E--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-------ARTRH  168 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTS-----S--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-------TTCCT
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHH-----h--cCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------CCCcH
Confidence            88899999999999999999999864     1  2223345677888888999999999999999864       23332


Q ss_pred             HHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhh
Q 016114          185 IMENMRIDLAELL-HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  263 (395)
Q Consensus       185 ~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  263 (395)
                         ..+...+... ...|+.+.|..+|++++...        |.....+...+......|+++.|..+|++++...    
T Consensus       169 ---~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--------p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~----  233 (308)
T d2onda1         169 ---HVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG----  233 (308)
T ss_dssp             ---HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS----
T ss_pred             ---HHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----
Confidence               2334556554 44689999999999999853        3334667788899999999999999999998731    


Q ss_pred             CCCCc-chHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 016114          264 GPDDQ-SISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  302 (395)
Q Consensus       264 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  302 (395)
                       +.+| .....+......-...|+.+.+..+++++.+.+.
T Consensus       234 -~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         234 -SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             -SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             -CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence             2233 2344566667777788999999999999887763

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.33  E-value=4.4e-11  Score=87.09  Aligned_cols=129  Identities=17%  Similarity=0.125  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC------CCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 016114          145 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS------LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  218 (395)
Q Consensus       145 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  218 (395)
                      .+...|..+...|++.+|+..|++++..........      ...+....++.++|.++...|++++|+..+++++++  
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--  106 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--  106 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--
Confidence            355678889999999999999999998754321111      123456678899999999999999999999999875  


Q ss_pred             hhhCCCChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHH
Q 016114          219 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE  289 (395)
Q Consensus       219 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  289 (395)
                            +|....++.++|.++...|++++|+..|++++++        .|....+...++.+........+
T Consensus       107 ------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1         107 ------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHH
Confidence                  4666788999999999999999999999999985        34445566667766655544443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.5e-11  Score=82.27  Aligned_cols=113  Identities=11%  Similarity=0.013  Sum_probs=86.4

Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHcCCCC
Q 016114          233 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN---RDKEAEKLVLEALYIREIAFGKDS  309 (395)
Q Consensus       233 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~  309 (395)
                      .+++..+...+++++|++.|++++.+        .|....+++++|.++...+   ++++|+..+++++...      ..
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~------~~   68 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG------SK   68 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS------CH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc------CC
Confidence            35677888999999999999999984        5777889999999998755   4556888887776521      22


Q ss_pred             hHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Q 016114          310 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK  368 (395)
Q Consensus       310 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  368 (395)
                      +....+++.+|.+|...|+++ +|+.+|++++++     .|+++   .+...++.+..+
T Consensus        69 ~~~~~~~~~Lg~~y~~~g~~~-~A~~~~~~aL~~-----~P~~~---~A~~l~~~I~~~  118 (122)
T d1nzna_          69 EEQRDYVFYLAVGNYRLKEYE-KALKYVRGLLQT-----EPQNN---QAKELERLIDKA  118 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHh-----CcCCH---HHHHHHHHHHHH
Confidence            444678999999999999999 999999999986     34443   445555544443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.3e-11  Score=81.07  Aligned_cols=112  Identities=8%  Similarity=-0.089  Sum_probs=85.8

Q ss_pred             HhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHhcccCCC
Q 016114          105 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA---EEAVELYKKALRVIKDSNYMSL  181 (395)
Q Consensus       105 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~a~~~~~~~~~~~~  181 (395)
                      .+++..+...+++++|++.|++++.+        +|....+++++|.++...++.   ++|+..+++++..        .
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~--------~   66 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--------G   66 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--------S
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc--------c
Confidence            35677788899999999999999987        455567899999999876554   5688888887752        1


Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH
Q 016114          182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  240 (395)
Q Consensus       182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  240 (395)
                      ..+....+++++|.+|...|++++|+.+|++++++        .|....+...++.+..
T Consensus        67 ~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--------~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------EPQNNQAKELERLIDK  117 (122)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHH
Confidence            22344567899999999999999999999999997        2444455555555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6.9e-11  Score=76.36  Aligned_cols=87  Identities=14%  Similarity=0.107  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCC
Q 016114           17 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE   96 (395)
Q Consensus        17 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   96 (395)
                      +.-++.+|.+++..|+|++|+.+|++|+++.+... ...+..+.++.++|.++...|++++|+.+|++++++        
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~-~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh-ccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------
Confidence            34578999999999999999999999999887642 233466789999999999999999999999999998        


Q ss_pred             ChhhhhhHHhHHHHHH
Q 016114           97 SADLVLPLFSLGSLFI  112 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~  112 (395)
                      .|....++.+++.+..
T Consensus        76 ~P~~~~a~~Nl~~~~~   91 (95)
T d1tjca_          76 DPEHQRANGNLKYFEY   91 (95)
T ss_dssp             CTTCHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHH
Confidence            5666778888776544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.9e-10  Score=73.38  Aligned_cols=88  Identities=13%  Similarity=0.004  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114          143 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  222 (395)
Q Consensus       143 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  222 (395)
                      +..++.+|.++...|+|++|+.+|++|+++....   .........++.++|.++...|++++|+.++++++++      
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~---~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l------   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEG---EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL------   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh---hccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh------
Confidence            3457899999999999999999999999988753   2233445678899999999999999999999999997      


Q ss_pred             CCChhHHHHHHHHHHHHHh
Q 016114          223 KEHPSFVTHLLNLAASYSR  241 (395)
Q Consensus       223 ~~~~~~~~~~~~la~~~~~  241 (395)
                        .|....++.+++.+...
T Consensus        76 --~P~~~~a~~Nl~~~~~~   92 (95)
T d1tjca_          76 --DPEHQRANGNLKYFEYI   92 (95)
T ss_dssp             --CTTCHHHHHHHHHHHHH
T ss_pred             --CcCCHHHHHHHHHHHHH
Confidence              34445677777665443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.11  E-value=1.8e-10  Score=80.98  Aligned_cols=105  Identities=11%  Similarity=0.088  Sum_probs=79.3

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhh----------CchhHHHHHHHHHHHHHHHhcC
Q 016114           25 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI----------GRAKKAVEIYHRVITILELNRG   94 (395)
Q Consensus        25 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~~~~~~   94 (395)
                      ..+.+.+.|++|+..|++++++        +|..+.++.++|.++...          +.+++|+..|++++++      
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l------   70 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------   70 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh------
Confidence            3466788999999999999987        355567888999998755          4457888888888887      


Q ss_pred             CCChhhhhhHHhHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 016114           95 TESADLVLPLFSLGSLFIKEGK-----------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK  153 (395)
Q Consensus        95 ~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  153 (395)
                        +|....+++++|.+|..+|+           +++|..+|++++++        +|.....+..|+.+.
T Consensus        71 --~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--------~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          71 --DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLEMTA  130 (145)
T ss_dssp             --CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHH
T ss_pred             --cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--------CCCHHHHHHHHHHHH
Confidence              67788899999999988764           56677777777766        344445566666554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.00  E-value=7e-10  Score=77.88  Aligned_cols=89  Identities=13%  Similarity=0.080  Sum_probs=70.8

Q ss_pred             HHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcC----------ChHHHHHHHHHHHHHHHHHhCC
Q 016114           68 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG----------KAVDAESVFSRILKIYTKVYGE  137 (395)
Q Consensus        68 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~al~~~~~~~~~  137 (395)
                      .+.+.+.|++|+..|++++++        +|..+.++.++|.++...+          .+++|+..|++++++       
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-------   70 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-------   70 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------
Confidence            355678899999999999997        6888899999999998554          457788888888876       


Q ss_pred             CChhHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHH
Q 016114          138 NDGRVGMAMCSLAHAKCANGN-----------AEEAVELYKKALRV  172 (395)
Q Consensus       138 ~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~a~~~  172 (395)
                       +|....++.++|.+|..+|+           +++|..+|++++++
T Consensus        71 -~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l  115 (145)
T d1zu2a1          71 -DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  115 (145)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence             56667789999999987653           56677777777764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.90  E-value=3.9e-08  Score=71.32  Aligned_cols=117  Identities=10%  Similarity=-0.033  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhcCcC--------------hHHHHHHHHHHHHHHHhhCchhHHH
Q 016114           14 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT--------------SILLVTSLLGMAKVLGSIGRAKKAV   79 (395)
Q Consensus        14 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~   79 (395)
                      ......+...|......|++++|...|.+|+.+.+.....+              .+....++..++.++...|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            44567788999999999999999999999998754221111              1345678899999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCC
Q 016114           80 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  138 (395)
Q Consensus        80 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  138 (395)
                      ..+++++.+        +|....++..++.++...|++.+|+..|+++.....+-+|-+
T Consensus        88 ~~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~  138 (179)
T d2ff4a2          88 AELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  138 (179)
T ss_dssp             HHHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999997        677888999999999999999999999999998887766654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=8.2e-08  Score=69.54  Aligned_cols=117  Identities=11%  Similarity=-0.138  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC--------------ChhHHHHHHHHHHHHHhhhcHHHHHH
Q 016114          185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--------------HPSFVTHLLNLAASYSRSKNFVEAER  250 (395)
Q Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~la~~~~~~~~~~~A~~  250 (395)
                      .....+...|......|++++|...|.+|+.+.......+              .+....++.+++.++...|++++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            3456678899999999999999999999998754221100              12344678899999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCC
Q 016114          251 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  309 (395)
Q Consensus       251 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  309 (395)
                      .+++++.+        +|....++..++.++...|++.+|+..|+++.....+.+|.+.
T Consensus        89 ~~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P  139 (179)
T d2ff4a2          89 ELEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  139 (179)
T ss_dssp             HHHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99999984        6777889999999999999999999999999998877776653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.63  E-value=5.8e-08  Score=75.08  Aligned_cols=128  Identities=9%  Similarity=-0.078  Sum_probs=97.0

Q ss_pred             HHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Q 016114          238 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD  317 (395)
Q Consensus       238 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  317 (395)
                      -.+..|++++|+..++++++        .+|.....+..++.++...|++++|...+++++++.        |.......
T Consensus         5 ~aL~~G~l~eAl~~l~~al~--------~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--------P~~~~~~~   68 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--------PEYLPGAS   68 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------GGGHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCcHHHHH
Confidence            45678999999999999998        478888999999999999999999999999998864        44555566


Q ss_pred             HHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHH
Q 016114          318 CLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  389 (395)
Q Consensus       318 ~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  389 (395)
                      .++.++...+...        ++........-...|.....+...+..+...|++++|...++++.+..+..
T Consensus        69 ~l~~ll~a~~~~~--------~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          69 QLRHLVKAAQARK--------DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             HHHHHHHHHHHHH--------HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHhccccH--------HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence            6676665544333        222222121122345566777788999999999999999999998876543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.60  E-value=3.7e-08  Score=76.17  Aligned_cols=126  Identities=10%  Similarity=-0.042  Sum_probs=97.0

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhH
Q 016114           25 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL  104 (395)
Q Consensus        25 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  104 (395)
                      .-.+..|++++|+..++++++.        +|....++..++.++...|++++|+..+++++++        .|......
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--------~P~~~~~~   67 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGA   67 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCcHHHH
Confidence            4467889999999999999985        4566778899999999999999999999999987        56777777


Q ss_pred             HhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 016114          105 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  173 (395)
Q Consensus       105 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  173 (395)
                      ..++.++...+...++.....+..       -..+|.....+...+..+...|++++|...++++.+..
T Consensus        68 ~~l~~ll~a~~~~~~a~~~~~~~~-------~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          68 SQLRHLVKAAQARKDFAQGAATAK-------VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCEE-------CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhccccHHHHHHhhhhh-------cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            777777765554444332221111       12345556677788999999999999999999998864

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.14  E-value=2.1e-05  Score=53.59  Aligned_cols=111  Identities=17%  Similarity=0.216  Sum_probs=83.2

Q ss_pred             hhcHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHH
Q 016114           30 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  109 (395)
Q Consensus        30 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~  109 (395)
                      ..|+++|+.+|+++.+.     +  ++   .++..++.  ....++++|+.+++++.+.          ..+.+.+.||.
T Consensus         6 ~kd~~~A~~~~~kaa~~-----g--~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~~----------g~~~a~~~Lg~   63 (133)
T d1klxa_           6 KKDLKKAIQYYVKACEL-----N--EM---FGCLSLVS--NSQINKQKLFQYLSKACEL----------NSGNGCRFLGD   63 (133)
T ss_dssp             HHHHHHHHHHHHHHHHT-----T--CT---THHHHHHT--CTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHC-----C--Ch---hhhhhhcc--ccccCHHHHHHHHhhhhcc----------cchhhhhhHHH
Confidence            35889999999998764     1  11   23444543  4557889999999988653          33567888999


Q ss_pred             HHHH----cCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 016114          110 LFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRV  172 (395)
Q Consensus       110 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~  172 (395)
                      +|..    ..++++|..+|+++.+.       .++   .+...||.+|..    ..++.+|..+|+++.+.
T Consensus        64 ~y~~g~~~~~d~~~A~~~~~~aa~~-------g~~---~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          64 FYENGKYVKKDLRKAAQYYSKACGL-------NDQ---DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhhhccccchhhHHHHHHHhhhhcc-------Ccc---hHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            9876    46789999999998764       233   467889999887    56899999999999873

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.06  E-value=3.2e-05  Score=52.62  Aligned_cols=108  Identities=18%  Similarity=0.145  Sum_probs=79.6

Q ss_pred             CHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHH
Q 016114          158 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  237 (395)
Q Consensus       158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  237 (395)
                      ++++|+.+|+++.+.       + +.    .+..+++.  ....++++|+.+++++.+.       .+   ..+...||.
T Consensus         8 d~~~A~~~~~kaa~~-------g-~~----~a~~~l~~--~~~~~~~~a~~~~~~aa~~-------g~---~~a~~~Lg~   63 (133)
T d1klxa_           8 DLKKAIQYYVKACEL-------N-EM----FGCLSLVS--NSQINKQKLFQYLSKACEL-------NS---GNGCRFLGD   63 (133)
T ss_dssp             HHHHHHHHHHHHHHT-------T-CT----THHHHHHT--CTTSCHHHHHHHHHHHHHT-------TC---HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC-------C-Ch----hhhhhhcc--ccccCHHHHHHHHhhhhcc-------cc---hhhhhhHHH
Confidence            678999999998763       1 11    12244443  3456889999999988653       22   356788999


Q ss_pred             HHHh----hhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 016114          238 SYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALY  299 (395)
Q Consensus       238 ~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~  299 (395)
                      +|..    ..++++|..+|+++.+.       .   ...+...||.+|..    ..+..+|..+|+++.+
T Consensus        64 ~y~~g~~~~~d~~~A~~~~~~aa~~-------g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          64 FYENGKYVKKDLRKAAQYYSKACGL-------N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             hhhhccccchhhHHHHHHHhhhhcc-------C---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            9876    46789999999999762       2   34577889999887    4689999999999876

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=1e-05  Score=52.91  Aligned_cols=74  Identities=11%  Similarity=-0.091  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHcCCch--hHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcchhhhchhhHHHHHHHHHHH
Q 016114          313 GEALDCLVSIQTRLGEDD--TKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  390 (395)
Q Consensus       313 ~~~~~~l~~~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  390 (395)
                      ..+.+..|.++.+..+..  .+|+.++++++.       .+.....+.++.||..|.+.|++++|..++++++++.|.+.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~-------~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-------cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            467788888888776543  156666665553       22223468999999999999999999999999999998876


Q ss_pred             hhh
Q 016114          391 QKV  393 (395)
Q Consensus       391 ~~~  393 (395)
                      +..
T Consensus       108 qA~  110 (124)
T d2pqrb1         108 QVG  110 (124)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=0.00029  Score=45.86  Aligned_cols=65  Identities=15%  Similarity=0.051  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHhh---CchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHH
Q 016114           59 VTSLLGMAKVLGSI---GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  130 (395)
Q Consensus        59 ~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (395)
                      ..+.++.|+++...   .+.++++.++++++..       ++.....+++.||..|.+.|+|++|..++++++++
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            46777888888754   4567888888877653       23345689999999999999999999999999998

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=93.32  E-value=0.93  Score=32.49  Aligned_cols=185  Identities=14%  Similarity=0.035  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114          146 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKE  224 (395)
Q Consensus       146 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~  224 (395)
                      ...+|.+....|+|++...+.++++++....   .++-.  ..=.+.+..+|- ..|....+...+... +  .+..  .
T Consensus         7 ~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~---n~eLt--~eERnLLsvayKn~i~~~R~s~R~i~~i-e--~k~~--~   76 (220)
T d2o8pa1           7 QKYRAQVFEWGGCFDKMFEALKSLIYLSEFE---NSEFD--DEERHLLTLCIKHKISDYRTMTSQVLQE-Q--TKQL--N   76 (220)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHSC--S
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhccc---CccCC--HHHHHHHHHHHHHHHhhhHHHHHHHHHH-H--Hhhc--c
Confidence            4457889999999999999999999885421   01111  111122222221 123333444433321 1  1111  1


Q ss_pred             ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHH-----hcCChHHHHHHHHHHHH
Q 016114          225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY-----HLNRDKEAEKLVLEALY  299 (395)
Q Consensus       225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~  299 (395)
                      +.....    +..-|. ..=-.+-...+...+++....+.++....+..+-..|..|.     ..|..++|...|++|..
T Consensus        77 ~~~~~~----~~~~y~-~~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~  151 (220)
T d2o8pa1          77 NDELVK----ICSEYV-FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFT  151 (220)
T ss_dssp             CHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             chhHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            221111    111111 11223344556666666665554321112222223343332     46888999999999999


Q ss_pred             HHHHHcCCCChHHHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHHHHh
Q 016114          300 IREIAFGKDSLPVGEALDCLVSIQT-RLGEDDTKLLELLKRVLRIQER  346 (395)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~al~~~~~  346 (395)
                      +....++|.+|-......+.+..+. -.++.+ +|.++.++|.+.+..
T Consensus       152 ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~-~A~~lAk~A~~~fde  198 (220)
T d2o8pa1         152 LLCEHPDKIEQLPLGFIQNLAYILSEKYGEKK-QVFNMLNSLGKILEL  198 (220)
T ss_dssp             HHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHH-HHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCcchHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHH
Confidence            9988788888876666666666654 466667 999999888554443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.53  E-value=0.67  Score=26.64  Aligned_cols=38  Identities=11%  Similarity=0.053  Sum_probs=32.2

Q ss_pred             cHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHh
Q 016114           13 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR   50 (395)
Q Consensus        13 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~   50 (395)
                      +-..+..+..-+.-+...|.|++|+++.++|.......
T Consensus         4 PLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA   41 (83)
T d2crba1           4 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA   41 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            44567778889999999999999999999998876554

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=91.47  E-value=1.7  Score=31.11  Aligned_cols=186  Identities=8%  Similarity=-0.048  Sum_probs=105.5

Q ss_pred             HHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhcccCCCC
Q 016114          104 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLD  182 (395)
Q Consensus       104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~  182 (395)
                      ...+|.+....|+|++......+++.+......+-+.   .-.+.+..+|-. .|..-.+.+.+....   .+   ...+
T Consensus         7 ~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~n~eLt~---eERnLLsvayKn~i~~~R~s~R~i~~ie---~k---~~~~   77 (220)
T d2o8pa1           7 QKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDD---EERHLLTLCIKHKISDYRTMTSQVLQEQ---TK---QLNN   77 (220)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---SCSC
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhcccCccCCH---HHHHHHHHHHHHHHhhhHHHHHHHHHHH---Hh---hccc
Confidence            4457889999999999999999999875421111111   112223332221 122333333333211   11   1111


Q ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHHHHHHHHHHHHH-----hhhcHHHHHHHHHHHHH
Q 016114          183 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS-----RSKNFVEAERLLRICLD  257 (395)
Q Consensus       183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~~~~~~A~~~~~~a~~  257 (395)
                       ....    .+..-|.. .--.+-...+...+.+......++....+..+-..|..|.     ..|..++|...|++|..
T Consensus        78 -~~~~----~~~~~y~~-~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~  151 (220)
T d2o8pa1          78 -DELV----KICSEYVF-SLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFT  151 (220)
T ss_dssp             -HHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             -hhHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence             1111    11111111 1123344556666666666553322222333334455443     45778899999999999


Q ss_pred             HHHHhhCCCCcchHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHH
Q 016114          258 IMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIA  304 (395)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~  304 (395)
                      +....+.+.+|.......+.+..+.. .++.++|.++.+.|.+.+.+.
T Consensus       152 ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdea  199 (220)
T d2o8pa1         152 LLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQ  199 (220)
T ss_dssp             HHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            98887888888887777777776665 799999999999885544433

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=91.13  E-value=2  Score=31.23  Aligned_cols=185  Identities=15%  Similarity=0.060  Sum_probs=98.2

Q ss_pred             HHHHHHHHHhhCchhHHHHHHHHHHHHHHHhcCCCChhhhhhHHhHHHHHHH-cCChHHHHHHHHHHHHHHHHHhCCCCh
Q 016114           62 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDG  140 (395)
Q Consensus        62 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  140 (395)
                      +..+|.+..+.++|++...+.+++++..    + +......=.+.++.+|-. .|....+...+....... .  +..++
T Consensus         7 lv~~AklaeqaeRy~dm~~~mk~v~~~~----~-~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~-~--~~~~~   78 (236)
T d1o9da_           7 NVYMAKLAEQAERYEEMVEFMEKVSNSL----G-SEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKE-E--SRGNE   78 (236)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTC----S-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--TTTCH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhc----C-CCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-H--ccCCh
Confidence            5567888888999999999999887641    0 111111222233333321 223333433333222111 1  11122


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcccCC-CCchHHHHHHHHHHHHHHHc-----CC-----hHHHHHH
Q 016114          141 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS-LDDSIMENMRIDLAELLHIV-----GR-----GQEGREL  209 (395)
Q Consensus       141 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~-----g~-----~~~A~~~  209 (395)
                      .....    ..-|. ..=-++=..++...+++......+. .++......+...|..|...     |+     .+.|...
T Consensus        79 ~~~~~----i~~yk-~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~~a  153 (236)
T d1o9da_          79 EHVNS----IREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTA  153 (236)
T ss_dssp             HHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             HHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHHHH
Confidence            21111    11110 0001223344555555544321111 22223333334445555432     21     4578899


Q ss_pred             HHHHHHHHHhhhCCCChhHHHHHHHHHHHHHh-hhcHHHHHHHHHHHHHHH
Q 016114          210 LEECLLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEAERLLRICLDIM  259 (395)
Q Consensus       210 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~  259 (395)
                      |+.|..+......+.+|.......|.+..+.. .|+.++|.++.+++++-.
T Consensus       154 Y~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         154 YKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999999888888899888777788777665 599999999888887644

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=88.54  E-value=5.2  Score=32.35  Aligned_cols=259  Identities=9%  Similarity=-0.038  Sum_probs=129.8

Q ss_pred             ChhhhhhHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHH---------------HHHHHHHHHHHHCCCHHH
Q 016114           97 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG---------------MAMCSLAHAKCANGNAEE  161 (395)
Q Consensus        97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---------------~~~~~la~~~~~~g~~~~  161 (395)
                      .|.....-+..+.+....|+..+|..........     +...|..+               ..+..........|++..
T Consensus        98 ~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~-----~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~  172 (450)
T d1qsaa1          98 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT-----GKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGL  172 (450)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC-----SSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhh
Confidence            4555555666777888889888887766554321     11122111               112233444555666666


Q ss_pred             HHHHHHH-----------HHHHHHhc------ccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCC
Q 016114          162 AVELYKK-----------ALRVIKDS------NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  224 (395)
Q Consensus       162 A~~~~~~-----------a~~~~~~~------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  224 (395)
                      |......           .+.+....      ....+..+. .......+..-....+.+.|...+......    ....
T Consensus       173 a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~-~~~~~~~~l~rla~~d~~~a~~~l~~~~~~----~~~~  247 (450)
T d1qsaa1         173 VTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDF-TRQMAAVAFASVARQDAENARLMIPSLAQA----QQLN  247 (450)
T ss_dssp             HHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHH----TTCC
T ss_pred             HHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChh-hhHHHHHHHHHHhccChhHHHHHHHhhhhc----cccc
Confidence            5554432           11111100      000111111 111122333333445677777666554331    1112


Q ss_pred             ChhHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 016114          225 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  304 (395)
Q Consensus       225 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  304 (395)
                      ..........++......+..+.+...+.....        ........ ..++......+++..+...+...       
T Consensus       248 ~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~-~w~~~~al~~~~~~~~~~~~~~l-------  311 (450)
T d1qsaa1         248 EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM--------RSQSTSLI-ERRVRMALGTGDRRGLNTWLARL-------  311 (450)
T ss_dssp             HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH--------TCCCHHHH-HHHHHHHHHHTCHHHHHHHHHHS-------
T ss_pred             HHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcc--------cccchHHH-HHHHHHHHHcCChHHHHHHHHhc-------
Confidence            222333333444444455666777766655443        11122222 22233445668888777666532       


Q ss_pred             cCCCChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH-------HHhccCCC-------------CHHHHHHHHHHHH
Q 016114          305 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI-------QEREFGSE-------------SEEVMLTLKKVVS  364 (395)
Q Consensus       305 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~-------------~~~~~~~~~~la~  364 (395)
                       ...........+.+|..+...|+.+ +|...|..+..-       ....+|..             ..-....-...+.
T Consensus       312 -~~~~~~~~r~~YW~gRa~~~~G~~~-~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~  389 (450)
T d1qsaa1         312 -PMEAKEKDEWRYWQADLLLERGREA-EAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVR  389 (450)
T ss_dssp             -CTTGGGSHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHH
T ss_pred             -CcccccHHHHHHHHHHHHHHcCChh-hHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHH
Confidence             2333444667789999999999988 899998886531       11111110             1111122234566


Q ss_pred             HHHHhcchhhhchhhHHHH
Q 016114          365 YLDKLGRKEEKFPLKKRLS  383 (395)
Q Consensus       365 ~~~~~g~~~~A~~~~~~a~  383 (395)
                      .+...|+..+|...+..++
T Consensus       390 ~L~~~g~~~~A~~e~~~l~  408 (450)
T d1qsaa1         390 ELMYWNLDNTARSEWANLV  408 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCchHHHHHHHHHH
Confidence            7788899998888776654

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.17  E-value=3.4  Score=29.78  Aligned_cols=181  Identities=14%  Similarity=0.069  Sum_probs=96.0

Q ss_pred             HHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhcccCCCC
Q 016114          104 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSLD  182 (395)
Q Consensus       104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~  182 (395)
                      +..++.+....++|++...+..+++..     +++-  ...-.+.+..+|-. .|..-.+.+.+.....   +. ...+.
T Consensus         6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~-----~~eL--t~eERnLlsvayKn~i~~rR~s~R~l~~ie~---k~-~~~~~   74 (230)
T d2o02a1           6 LVQKAKLAEQAERYDDMAACMKSVTEQ-----GAEL--SNEERNLLSVAYKNVVGARRSSWRVVSSIEQ---KT-EGAEK   74 (230)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT-----CSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C-------
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHhc-----CCCC--CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---HH-cCcch
Confidence            456788888999999999999888765     1111  11122223333221 1223333333332211   10 00111


Q ss_pred             chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC--CCChh-HHHHHHHHHHHHHhh----------hcHHHHH
Q 016114          183 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG--KEHPS-FVTHLLNLAASYSRS----------KNFVEAE  249 (395)
Q Consensus       183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~-~~~~~~~la~~~~~~----------~~~~~A~  249 (395)
                      ...       +..-|.. .=-++=...++..+.+.....-  ..++. .+..+...|..|.-.          .-.+.|.
T Consensus        75 ~~~-------~i~~yk~-kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~  146 (230)
T d2o02a1          75 KQQ-------MAREYRE-KIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQ  146 (230)
T ss_dssp             CHH-------HHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             hhH-------HHHHHHH-HHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHH
Confidence            111       1111110 0112233444555555443321  12222 233333445554432          2235799


Q ss_pred             HHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHH
Q 016114          250 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREI  303 (395)
Q Consensus       250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~  303 (395)
                      ..|++|+++....+.+.+|.......+.+..+.. .|+.++|.++.+++++....
T Consensus       147 ~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai~  201 (230)
T d2o02a1         147 QAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIA  201 (230)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999888888888877777777766654 79999999999998876543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=88.10  E-value=5.6  Score=32.16  Aligned_cols=199  Identities=12%  Similarity=0.026  Sum_probs=116.6

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhCCCChhHH
Q 016114          150 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  229 (395)
Q Consensus       150 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  229 (395)
                      +..-....+.+.|...+......      ..............++......+..+.+..+.......      .......
T Consensus       221 ~l~rla~~d~~~a~~~l~~~~~~------~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~  288 (450)
T d1qsaa1         221 AFASVARQDAENARLMIPSLAQA------QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQSTSLI  288 (450)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHH------TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCHHHH
T ss_pred             HHHHHhccChhHHHHHHHhhhhc------ccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc------ccchHHH
Confidence            33334445777777777665432      12233333444444555555567777777776654331      1222222


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-------HH
Q 016114          230 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI-------RE  302 (395)
Q Consensus       230 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~  302 (395)
                      .   .++......+++..+...+...        ...........+-+|..+...|+.++|...|..+..-       ..
T Consensus       289 ~---w~~~~al~~~~~~~~~~~~~~l--------~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa  357 (450)
T d1qsaa1         289 E---RRVRMALGTGDRRGLNTWLARL--------PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAA  357 (450)
T ss_dssp             H---HHHHHHHHHTCHHHHHHHHHHS--------CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHH
T ss_pred             H---HHHHHHHHcCChHHHHHHHHhc--------CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHH
Confidence            2   2223345668888877766542        2233445677789999999999999999999887541       11


Q ss_pred             HHcCCC-------------ChHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Q 016114          303 IAFGKD-------------SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL  369 (395)
Q Consensus       303 ~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  369 (395)
                      ..+|..             .......-...+..+...|+.. .|...+...+.       ..++.   -...++.+..+.
T Consensus       358 ~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~-~A~~e~~~l~~-------~~~~~---~~~~la~lA~~~  426 (450)
T d1qsaa1         358 QRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDN-TARSEWANLVK-------SKSKT---EQAQLARYAFNN  426 (450)
T ss_dssp             HHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHH-HHHHHHHHHHT-------TCCHH---HHHHHHHHHHHT
T ss_pred             HHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCch-HHHHHHHHHHh-------CCCHH---HHHHHHHHHHHC
Confidence            112211             0001111234466677888888 88877766542       22332   345678899999


Q ss_pred             cchhhhchhhHHH
Q 016114          370 GRKEEKFPLKKRL  382 (395)
Q Consensus       370 g~~~~A~~~~~~a  382 (395)
                      |.++.|+....++
T Consensus       427 g~~~~aI~a~~~~  439 (450)
T d1qsaa1         427 QWWDLSVQATIAG  439 (450)
T ss_dssp             TCHHHHHHHHHHT
T ss_pred             CChhHHHHHHHHH
Confidence            9999998776654

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=87.26  E-value=4  Score=29.54  Aligned_cols=184  Identities=11%  Similarity=-0.012  Sum_probs=97.7

Q ss_pred             hHHhHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhcccCCC
Q 016114          103 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVIKDSNYMSL  181 (395)
Q Consensus       103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~  181 (395)
                      -+..+|.+....++|++...+..++++...   +++-  ...-.+.+..+|-. .|..-.+.+.+.........    ..
T Consensus         6 ~lv~~AklaeqaeRy~dm~~~mk~v~~~~~---~~~L--s~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~----~~   76 (236)
T d1o9da_           6 ENVYMAKLAEQAERYEEMVEFMEKVSNSLG---SEEL--TVEERNLLSVAYKNVIGARRASWRIISSIEQKEES----RG   76 (236)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTCS---SSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhcC---CCCC--CHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHc----cC
Confidence            356678888889999999999998876510   1111  11112223333221 12233344444332222111    01


Q ss_pred             CchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC--CCChh-HHHHHHHHHHHHHhh----------hcHHHH
Q 016114          182 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG--KEHPS-FVTHLLNLAASYSRS----------KNFVEA  248 (395)
Q Consensus       182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~-~~~~~~~la~~~~~~----------~~~~~A  248 (395)
                      +....     .+..-|.. .=-++=...++..+.+.....-  ..++. .+..+...|..|.-.          .-.+.|
T Consensus        77 ~~~~~-----~~i~~yk~-kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a  150 (236)
T d1o9da_          77 NEEHV-----NSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAEST  150 (236)
T ss_dssp             CHHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred             ChHHH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHH
Confidence            11111     11111110 0112223344555554433321  12222 233333445554432          224678


Q ss_pred             HHHHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHH
Q 016114          249 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIR  301 (395)
Q Consensus       249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  301 (395)
                      ...|+.|..+....+.+.+|.......+.+..+.. .|+.++|..+.+++++..
T Consensus       151 ~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         151 LTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999999998888888899887777788877765 699999999888887644

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.22  E-value=1.9  Score=24.75  Aligned_cols=38  Identities=11%  Similarity=0.015  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhC
Q 016114          185 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  222 (395)
Q Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  222 (395)
                      ..+..+...|.-+...|+|++|+++.++|.........
T Consensus         6 N~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~k   43 (83)
T d2crba1           6 NLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK   43 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            34556677888999999999999999999888766553

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=82.38  E-value=6.6  Score=27.95  Aligned_cols=59  Identities=17%  Similarity=0.184  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHH
Q 016114          160 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI-VGRGQEGRELLEECLLITE  218 (395)
Q Consensus       160 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~  218 (395)
                      +.|...|++|+++........|.+|.......|.+..|+. .++.++|.++.+.|.+...
T Consensus       124 ~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd~~~  183 (223)
T d3efza1         124 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQAAE  183 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            6788999999998876433456677666666777776664 7999999999998887543