Citrus Sinensis ID: 016120

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
Protein Sequence
MLEFHLRLFCERLKRVLAGVEGTLPLPDSTNLTPLFQNLLTESEIIATTLLGNYEADMARHLFQFIREEFDDSKISLPFLELLDLEESDEEDVERADILEILEDINDFVHESEEAIDTFFINIMQQQNSENESESSTDMALLVELHTKIIDIRNRMQQLPPGDNGFDISDKCNEIIHLLSEGQPRLDINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAIPTVGDNFFL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHcccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEccccHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHcccccccccccEEEEEEcccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHccccccccEEEEEcccHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEcccccHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHccHHHHHcccEEEEEEEcccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHcHccccccccEEEEEEccHHHHHHcccccccccccccEEEcccccccHHHHHHHHHHHHHccccccccccHHHHHHcccccc
Coil and Loop (DISEMBL)
MLEFHLRLFCERLKRVLAGvegtlplpdstnltplfQNLLTESEIIATTLLGNYEADMARHLFQFIREEfddskislpflelldleesdeedVERADILEILEDINDFVHESEEAIDTFFINIMQqqnsenesesstDMALLVELHTKIIDIRNrmqqlppgdngfdisdKCNEIIHLLsegqprldinEFERGREELFDLLIEGPSGLAVVAILdssgfdktvftadtynndhvKFYFDCLAWVRVSIAYDFGKMLDDIIksvmppsrvsviigedyQLKKSILRDYLTNKKYFIVLddvfdnseiWSDLeellpddengsrvlitvtdpdllaslemengekirrdsvlfggplirlKHEAWQFFILHygsmplenylqgeaiptvgdnffl
Flexible Loop (DISEMBL)
MLEFHLRLFCERLKRVLAGVegtlplpdstnLTPLFQNLLTESEIIATTLLGNYEADMARHLFQFIREEFDDSKISLPFLELldleesdeeDVERADILEILEDINDFVHESEEAIDTFFINIMQQQNSENESESSTDMALLVELHTKIIDIRNRMQQLPPGDNGFDISDKCNEIIHLLsegqprldINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEellpddengsRVLITVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAIPTVGDNFFL
Low Complexity Region (SEG)
MLEFHLRLFCERLKRVLAGVEGTLPLPDSTNLTPLFQNLLTESEIIATTLLGNYEADMARHLFQFIREEFDDSKISLPFlelldleesdeedveRADILEILEDINDFVHESEEAIDTFFINIMqqqnsenesessTDMALLVELHTKIIDIRNRMQQLPPGDNGFDISDKCNEIIHLLSEGQPRLDINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAIPTVGDNFFL
Disordered region (IsUnstruct)
***FHLRLFCERLKRVLAGVEGTLPLPDSTNLTPLFQNLLTESEIIATTLLGNYEADMARHLFQFIREEFDDSKISLPFLELLDLE******VERADILEILEDINDFVHESEEAIDTFFINIM***************ALLVELHTKIIDIRNRMQQLPPGDNGFDISDKCNEIIHLLSEGQPRLDINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAIPTVGD****
Disordered Region (DISOPRED)
**EFHLRLFCERLKRVLAGVEGTLPLPDSTNLTPLFQNLLTESEIIATTLLGNYEADMARHLFQFIREEFDDSKISLPFLELLDLEESDEEDVERADILEILEDINDFVHESEEAIDTFFIN******************LLVELHTKIIDIRNRMQQLPP**************************INEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV****************KKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRRDSVL******RLKHEAWQFFILHYG***********AIPTVGDNFFL
Disordered Region (DISEMBL)
MLEFHLRLFCERLKRVLAGVEGTLPLPDSTNLTPLFQNLLTESEIIATTLLGNYEADMARHLFQFIREEFDDSKISLPFLELLDLEESDEEDVERADILEILEDINDFVHESEEAIDTFFINIMQQ***********DMALLVELHTKIIDIRNRMQQLPPGDNGFDISDKCNEIIHLLSEGQPRLDINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAIPTVGDNFFL
Disordered Region (DISPRO)
MLEFHLRLFCERLKRVLAGVEGTLPLPDSTNLTPLFQNLLTESEIIATTLLGNYEADMARHLFQFIREEFDDSKISLPFLELLDLEESDEEDVERADILEILEDINDFVHESEEAIDTFFINIMQQQNSENESESSTDMALLVELHTKIIDIRNRMQQLPPGDNGFD******************LDINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAIPTVGDNFFL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLEFHLRLFCERLKRVLAGVEGTLPLPDSTNLTPLFQNLLTESEIIATTLLGNYEADMARHLFQFIREEFDDSKISLPFLELLDLEESDEEDVERADILEILEDINDFVHESEEAIDTFFINIMQQQNSENESESSTDMALLVELHTKIIDIRNRMQQLPPGDNGFDISDKCNEIIHLLSEGQPRLDINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAIPTVGDNFFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	394	2.2.26 [Sep-21-2011]
P0C8S1	906	Probable disease resistan	yes	no	0.723	0.314	0.235	3e-12
Q9M667	835	Disease resistance protei	no	no	0.685	0.323	0.242	7e-11
Q39214	926	Disease resistance protei	no	no	0.314	0.133	0.289	8e-10
A7XGN8	910	Disease susceptibility pr	no	no	0.639	0.276	0.243	9e-10
Q9FJB5	901	Disease resistance RPP8-l	no	no	0.647	0.283	0.237	1e-09
Q9XIF0	906	Putative disease resistan	no	no	0.644	0.280	0.252	2e-09
A9QGV6	910	Inactive disease suscepti	no	no	0.639	0.276	0.243	2e-09
Q9LQ54	870	Probable disease resistan	no	no	0.626	0.283	0.246	3e-09
Q6L403	1312	Putative late blight resi	N/A	no	0.342	0.102	0.298	4e-09
Q6L3Z7	1317	Putative late blight resi	N/A	no	0.342	0.102	0.298	4e-09

>sp|P0C8S1|RP8L2_ARATH Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 144/319 (45%), Gaps = 34/319 (10%)

Query: 66  IREEFDDSKISLPFLELLDLEESDEEDVERADILEILEDINDFVHESEEAIDTFFINIMQ 125
           I E+ D  K  L  L+ L L+++D +  E   +   LED+ D V+++++ I++F +N ++
Sbjct: 27  IDEQVDGLKRQLGRLQSL-LKDADAKKNETERVRNFLEDVKDIVYDADDIIESFLLNELR 85

Query: 126 QQNSENESESSTDMALLVE----------LHTKIIDIRNRMQQLP------PGDNGFDIS 169
            +    + +  T    LV+          +  +I ++   MQ L        G     + 
Sbjct: 86  GKEKGIKKQVRTLACFLVDRRKFASDIEGITKRISEVIVGMQSLGIQHIADGGGRSLSLQ 145

Query: 170 DKCNEIIHLLSEGQPRLDINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADT 229
           ++  EI    S      D+   ++  EEL D L+E  S + VV++    G  KT      
Sbjct: 146 ERQREIRQTFSRNSES-DLVGLDQSVEELVDHLVENDS-VQVVSVSGMGGIGKTTLARQV 203

Query: 230 YNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL 289
           +++D V+ +FD  +WV VS  +    +   I++ + P     +I  ++Y L+  +  + L
Sbjct: 204 FHHDIVRRHFDGFSWVCVSQQFTRKDVWQRILQDLRPYDE-GIIQMDEYTLQGELF-ELL 261

Query: 290 TNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRRDS 349
            + +Y +VLDDV+   E W  ++ + P  + G ++L+T  +           G  +  D 
Sbjct: 262 ESGRYLLVLDDVW-KEEDWDRIKAVFP-HKRGWKMLLTSRN----------EGLGLHADP 309

Query: 350 VLFG-GPLIRLKHEAWQFF 367
             F   P I    ++W+ F
Sbjct: 310 TCFAFRPRILTPEQSWKLF 328

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2

 Score = 68.9 bits (167), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 132/301 (43%), Gaps = 31/301 (10%)

Query: 51  LGNYEADMARHLFQFIREEFDDSKISLPFLE--LLDLEESDEEDVERADILEILEDINDF 108
           +GNY  + A  +F  ++E+ ++ K  L  +   L D+E  + ED    +  ++   + DF
Sbjct: 13  IGNYLIEEA-SMFMAVKEDLEELKTELTCIHGYLKDVEAREREDEVSKEWSKL---VLDF 68

Query: 109 VHESEEAIDTFFINIMQQQNSE------NESESSTDMALLVE----LHTKIIDIRNRMQQ 158
            ++ E+ +DT+ + + ++          N+     D   +V+    L  +I+DI  + + 
Sbjct: 69  AYDVEDVLDTYHLKLEERSQRRGLRRLTNKIGRKMDAYSIVDDIRILKRRILDITRKRET 128

Query: 159 L------PPGDNGFDISDKCNEIIHLLSEGQPRLDINEFERGREELFDLLIEGPSGLAVV 212
                   P   G   S +  ++    S  Q  + +   +  +  L  LL        ++
Sbjct: 129 YGIGGLKEPQGGGNTSSLRVRQLRRARSVDQEEVVVGLEDDAKILLEKLLDYEEKNRFII 188

Query: 213 AILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPS---- 268
           +I    G  KT      YN+  VK  F+  AW  VS  Y  G +L  II+S+   S    
Sbjct: 189 SIFGMGGLGKTALARKLYNSRDVKERFEYRAWTYVSQEYKTGDILMRIIRSLGMTSGEEL 248

Query: 269 -RVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLIT 327
            ++     E+ ++    L   L  KKY +V+DD+++  E W  L+  LP +  GSRV+IT
Sbjct: 249 EKIRKFAEEELEV---YLYGLLEGKKYLVVVDDIWER-EAWDSLKRALPCNHEGSRVIIT 304

Query: 328 V 328
            
Sbjct: 305 T 305

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to other resistance proteins, it works independently of ESD1 and NSD1 proteins and does not require the accumulation of salicylic acid, suggesting the existence of an independent signaling pathway. The specificity to avirulence proteins differs in the different cultivars.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 4/128 (3%)

Query: 211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV 270
           VVA++   G  KT  +A+ + +  V+ +F+  AWV +S +Y    +   +IK     +  
Sbjct: 195 VVAVVGMGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADT 254

Query: 271 SV---IIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLIT 327
            +   +    Y+     L +YL +K+Y +VLDDV+  + +W ++   LPD   GSRV++T
Sbjct: 255 QIPAELYSLGYRELVEKLVEYLQSKRYIVVLDDVW-TTGLWREISIALPDGIYGSRVMMT 313

Query: 328 VTDPDLLA 335
             D ++ +
Sbjct: 314 TRDMNVAS 321

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.

Arabidopsis thaliana (taxid: 3702)

>sp|A7XGN8|LOV1B_ARATH Disease susceptibility protein LOV1 OS=Arabidopsis thaliana GN=LOV1 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 127/283 (44%), Gaps = 31/283 (10%)

Query: 66  IREEFDDSKISLPFLELLDLEESDEEDVERADILEILEDINDFVHESEEAIDTFFINIMQ 125
           I E+ D  K  L  L+ L L+++D +  E   +   LED+ D V+++E+ I++F +N  +
Sbjct: 27  IGEQVDGLKRQLGRLQSL-LKDADAKKHESERVRNFLEDVRDIVYDAEDIIESFLLNEFR 85

Query: 126 QQNSENESESSTDMALLVELHTKIIDIRNRMQQLPPGDNGFDISDKCNEIIHLLSEGQPR 185
            +    +  +      LV+      DI+   +++     G   S    EII    +G   
Sbjct: 86  TKEKGIKKHARRLACFLVDRRKFASDIKGITKKISEVIGGMK-SLGIQEII----DGASS 140

Query: 186 LDINEFERGREEL---------FDLL-----IEGPSG-------LAVVAILDSSGFDKTV 224
           + + E +R ++E+          DL+     +E  +G       + VV+I    G  KT 
Sbjct: 141 MSLQERQREQKEIRQTFANSSESDLVGVEQSVEALAGHLVENDNIQVVSISGMGGIGKTT 200

Query: 225 FTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSI 284
                +++D V+ +FD  AWV VS  +    +   I + + P +    I   D  + +  
Sbjct: 201 LARQVFHHDMVQRHFDGFAWVFVSQQFTQKHVWQRIWQELQPQN--GDISHMDEHILQGK 258

Query: 285 LRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLIT 327
           L   L   +Y +VLDDV+   E W  ++ + P  + G ++L+T
Sbjct: 259 LFKLLETGRYLVVLDDVW-KEEDWDRIKAVFP-RKRGWKMLLT 299

Confers susceptibility to the fungus Cochliobolus victoriae by conditioning victorin-dependent (victorin is a toxin synthesized by C.victoriae) induction of defense-associated proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJB5|RP8L3_ARATH Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 124/278 (44%), Gaps = 23/278 (8%)

Query: 66  IREEFDDSKISLPFLELLDLEESDEEDVERADILEILEDINDFVHESEEAIDTFFINIMQ 125
           I E+ D  K  L  L+ L L+++D +      +   LED+ D V ++E+ I+++ +N ++
Sbjct: 27  IDEQVDGLKRQLRGLQSL-LKDADAKKHGSDRVRNFLEDVKDLVFDAEDIIESYVLNKLR 85

Query: 126 QQNSENESESSTDMALLVELHTKIIDIRN---RM-------------QQLPPGDNGFDIS 169
            +    ++        L + H    DI     R+             QQ+  G     + 
Sbjct: 86  GEGKGVKNHVRRLACFLTDRHKVASDIEGITKRISKVIGEMQSLGIQQQIIDGGRSLSLQ 145

Query: 170 DKCNEIIHLLSEGQPRLDINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADT 229
           D   EI           D+   E+  EEL   ++E    + VV+I    G  KT      
Sbjct: 146 DIQREIRQTFPNSSES-DLVGVEQSVEELVGPMVE-IDNIQVVSISGMGGIGKTTLARQI 203

Query: 230 YNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL 289
           +++D V+ +FD  AWV VS  +    +   I++ + P     ++  ++Y ++  + +  L
Sbjct: 204 FHHDLVRRHFDGFAWVCVSQQFTQKHVWQRILQELRPHDG-EILQMDEYTIQGKLFQ-LL 261

Query: 290 TNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLIT 327
              +Y +VLDDV+   E W  ++E+ P  + G ++L+T
Sbjct: 262 ETGRYLVVLDDVW-KEEDWDRIKEVFP-RKRGWKMLLT 297

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 125/277 (45%), Gaps = 23/277 (8%)

Query: 63  FQFIREEF----DDSKISLPFLELLDLEESDEEDVERADILEILEDINDFVHESEEAIDT 118
           FQ + E+     DD K+ + FL      ++D +   RA     LE+I +  +++E+ I+ 
Sbjct: 29  FQGVEEQITELRDDLKMLMAFLS-----DADAKKQTRALARNCLEEIKEITYDAEDIIEI 83

Query: 119 FFIN-IMQQQNSENESESSTDMAL-LVELHTKIIDIRNRMQQLPPGDNGFDISD------ 170
           F +   +  ++         ++AL +  +  +I  +   MQ L    +  D  D      
Sbjct: 84  FLLKGSVNMRSLACFPGGRREIALQITSISKRISKVIQVMQNLGIKSDIMDGVDSHAQLE 143

Query: 171 KCNEIIHLLSEGQPRLDINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTY 230
           +  E+ H  S  +   ++   E+  E+L + L+   S   V +I    G  KT      +
Sbjct: 144 RKRELRHTFS-SESESNLVGLEKNVEKLVEELVGNDSSHGV-SITGLGGLGKTTLARQIF 201

Query: 231 NNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLT 290
           ++D VK +FD LAWV VS  +    +   I+ ++ P  + S +  +D Q K   L   L 
Sbjct: 202 DHDKVKSHFDGLAWVCVSQEFTRKDVWKTILGNLSPKYKDSDLPEDDIQKK---LFQLLE 258

Query: 291 NKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLIT 327
            KK  IV DD++   E W  +  + P+ + G +VL+T
Sbjct: 259 TKKALIVFDDLWKR-EDWYRIAPMFPERKAGWKVLLT 294

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|A9QGV6|LOV1C_ARATH Inactive disease susceptibility protein LOV1 OS=Arabidopsis thaliana GN=LOV1 PE=3 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 127/283 (44%), Gaps = 31/283 (10%)

Query: 66  IREEFDDSKISLPFLELLDLEESDEEDVERADILEILEDINDFVHESEEAIDTFFINIMQ 125
           I E+ D  K  L  L+ L L+++D +  E   +   LED+ D V+++E+ I++F +N  +
Sbjct: 27  IGEQVDGLKRQLGRLQSL-LKDADAKKHESERVRNFLEDVRDIVYDAEDIIESFLLNEFR 85

Query: 126 QQNSENESESSTDMALLVELHTKIIDIRNRMQQLPPGDNGFDISDKCNEIIHLLSEGQPR 185
            +    +  +      LV+      DI+   +++     G   S    EII    +G   
Sbjct: 86  AKEKGIKKHARRLACFLVDRRKFDSDIKGITKKISEVIGGMK-SLGIQEII----DGASS 140

Query: 186 LDINEFERGREEL---------FDLL-----IEGPSG-------LAVVAILDSSGFDKTV 224
           + + E +R ++E+          DL+     +E  +G       + VV+I    G  KT 
Sbjct: 141 MSLQERQREQKEIRQTFANSSESDLVGVEQSVEALAGHLVENDNIQVVSISGMGGIGKTT 200

Query: 225 FTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSI 284
                +++D V+ +FD  AWV VS  +    +   I + + P +    I   D  + +  
Sbjct: 201 LARQVFHHDMVQRHFDGFAWVFVSQQFAQKHVWQRIWQELQPQN--GDISHMDEHILQGK 258

Query: 285 LRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLIT 327
           L   L   +Y +VLDDV+   E W  ++ + P  + G ++L+T
Sbjct: 259 LFKLLETGRYLVVLDDVW-KEEDWDRIKAVFP-RKRGWKMLLT 299

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ54|DRL12_ARATH Probable disease resistance protein At1g59620 OS=Arabidopsis thaliana GN=At1g59620 PE=2 SV=3

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 127/268 (47%), Gaps = 21/268 (7%)

Query: 63  FQFIREEFDDSKISLPFLELLDLEESDEEDVERADILEILEDINDFVHESEEAIDTFFIN 122
           FQ ++++F++ +  L  L    LE++D +  + A +   ++++ + V+++E+ I+T F+ 
Sbjct: 24  FQGVKKQFNELRSDLNKLRCF-LEDADAKKHQSAMVSNTVKEVKEIVYDTEDIIET-FLR 81

Query: 123 IMQQQNSENESESSTDMALLVELHTKI-IDIRNRMQQLPPGD--NGFDISDKCNEIIHLL 179
             Q   +    +   + A ++    KI ID+    +++   D  N        NE +   
Sbjct: 82  KKQLGRTRGMKKRIKEFACVLPDRRKIAIDMEGLSKRIAKKDKRNMRQTFSNNNESV--- 138

Query: 180 SEGQPRLDINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYF 239
                   +   E   ++L   L+E      VV+I    G  KT      +N++ VK +F
Sbjct: 139 --------LVGLEENVKKLVGHLVEVEDSSQVVSITGMGGIGKTTLARQVFNHETVKSHF 190

Query: 240 DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLD 299
             LAWV VS  +    +   I++ V  P  + + + ED +L++ + R  L  +K  IVLD
Sbjct: 191 AQLAWVCVSQQFTRKYVWQTILRKV-GPEYIKLEMTED-ELQEKLFR-LLGTRKALIVLD 247

Query: 300 DVFDNSEIWSDLEELLPDDENGSRVLIT 327
           D++   E W  +E + P  + G +VL+T
Sbjct: 248 DIW-REEDWDMIEPIFPLGK-GWKVLLT 273

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6L403|R1B17_SOLDE Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 19/154 (12%)

Query: 184 PRLD--INEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDC 241
           PR++  I  F+   E L + L+ G  G  V++I    G  KT      Y++  V  +FD 
Sbjct: 534 PRMNEEIVGFKDVIENLRNRLLNGTKGQDVISIHGMPGLGKTTLANRLYSDRSVVSHFDI 593

Query: 242 LAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKS-------ILRDYLTNKKY 294
            A   VS  Y + ++L  ++            +G+D   +K         LR  L +++Y
Sbjct: 594 CAQCCVSQVYSYKELLLALLCDA---------VGDDSARRKHNENKLADKLRKTLLSRRY 644

Query: 295 FIVLDDVFDNSEIWSDLEELLPDDENGSRVLITV 328
            I++DDV+DNS  W DL    PD  N SR+++T 
Sbjct: 645 LILVDDVWDNSA-WDDLRGCFPDANNRSRIILTT 677

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q6L3Z7|R1B14_SOLDE Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 19/154 (12%)

Query: 184 PRLD--INEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDC 241
           PR++  I  F+   E L + L+ G  G  V++I    G  KT      Y++  V  +FD 
Sbjct: 534 PRMNEEIVGFKDVIENLRNRLLNGTKGQDVISIHGMPGLGKTTLANRLYSDRSVVSHFDI 593

Query: 242 LAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKS-------ILRDYLTNKKY 294
            A   VS  Y + ++L  ++            +G+D   +K         LR  L +++Y
Sbjct: 594 CAQCCVSQVYSYKELLLALLCDA---------VGDDSARRKHNENKLADKLRKTLLSRRY 644

Query: 295 FIVLDDVFDNSEIWSDLEELLPDDENGSRVLITV 328
            I++DDV+DNS  W DL    PD  N SR+++T 
Sbjct: 645 LILVDDVWDNSA-WDDLRGCFPDANNRSRIILTT 677

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
224138284	841	NBS resistance protein [Populus trichoca	0.736	0.344	0.263	2e-18
225454212	936	PREDICTED: putative disease resistance p	0.705	0.297	0.268	2e-18
357460001	942	Disease resistance protein [Medicago tru	0.591	0.247	0.269	4e-18
297744819	597	unnamed protein product [Vitis vinifera]	0.571	0.376	0.281	7e-18
359489158	531	PREDICTED: putative disease resistance p	0.583	0.433	0.287	9e-18
357459971	920	Disease resistance protein [Medicago tru	0.687	0.294	0.276	1e-17
359489148	897	PREDICTED: probable disease resistance R	0.730	0.321	0.273	1e-17
255577491	860	leucine-rich repeat containing protein,	0.619	0.283	0.265	1e-17
359489156	899	PREDICTED: probable disease resistance p	0.555	0.243	0.284	2e-17
351721361	934	NBS-LRR type disease resistance protein	0.583	0.246	0.269	3e-17

>gi|224138284|ref|XP_002326564.1| NBS resistance protein [Populus trichocarpa] gi|222833886|gb|EEE72363.1| NBS resistance protein [Populus trichocarpa]

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 155/338 (45%), Gaps = 48/338 (14%)

Query: 31  NLTPLFQNLLTESEIIATTLLGNYEADMARHLFQFIREEFDDSKISLPFLELLD-LEESD 89
            L PLF+N L         L G  E  +      ++R E +  +    FL + D LEESD
Sbjct: 12  KLAPLFENELQ-------LLRGGREEIV------YVRGELERIR---AFLRVADTLEESD 55

Query: 90  EEDVERADILEILEDINDFVHESEEAIDTFFINIMQQQNS------ENESESSTDMALLV 143
           EE      +   ++ I D  HE+E+ +D F I +     S         S    +M    
Sbjct: 56  EE------VKVWVKQIRDVAHETEDILDEFTILLAHDHASGLYGLIHKMSCCIKNMKARY 109

Query: 144 ELHTKIIDIRNRMQQLPPGD----NGFDISDKCNEIIHLLSEGQPR---------LDINE 190
            + ++I  I +R++ +  G       F +++  +      +  Q R         +D+  
Sbjct: 110 RIASQIKAINSRIRNISDGHRRLRQKFCVAEHGSSSTS--TGWQDRREDALLLDMIDLVG 167

Query: 191 FERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA 250
            E+ + +L   L++G SG  VV++    G  KT      Y++  VK +F   AW+ VS +
Sbjct: 168 IEKRKSKLVGWLVDGRSGRVVVSLAGMGGLGKTTLAKQVYDDAEVKKHFSVHAWITVSRS 227

Query: 251 YDFGKMLDDIIKSVMPPSRVSV---IIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEI 307
           Y   ++L DI++ +    R  V   +  ++    KSI+++ L  ++Y IVLDDV+  +E 
Sbjct: 228 YKMEELLKDILQQLFAADRKPVPKNLESQNSSQLKSIIKEVLQKRRYLIVLDDVWHVNE- 286

Query: 308 WSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKI 345
           W  ++  LP +  GSRV++T  + DL  +  +E+  K+
Sbjct: 287 WDAVKYALPTNNCGSRVMLTTRNADLAFTSRIESEGKV 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454212|ref|XP_002274233.1| PREDICTED: putative disease resistance protein At1g50180-like [Vitis vinifera]

 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 146/305 (47%), Gaps = 27/305 (8%)

Query: 62  LFQFIREEFDDSKISLPFLELLDLEESDEEDVERADILEILEDINDFVHESEEAIDTFFI 121
           LF  + E+    +  L ++ L  L+++D + +    I   +E I +  H++E+ ID F +
Sbjct: 22  LFGQVEEQVKLLRDELKWMRLF-LKDADSQSLCNEKIKLWVEQIRNVTHDAEDVIDEFIL 80

Query: 122 NIMQQQNSENESESSTDMALLV----------ELHTKIIDIRNRMQQLPPGDNGFDI--- 168
           ++ ++Q   N  +    +   V          EL  ++ +I  R++++    + + +   
Sbjct: 81  DMDRRQLRLNTLKFLKCLPTCVGFADKLPFIHELDGRVKEINIRIERIMANRSKYGLEAL 140

Query: 169 ----SDKCNEIIHLLSEGQPRL----DINEFERGREELFDLLIEGPSGLAVVAILDSSGF 220
               S    + +    E   ++    D+   E G E +  +L +G    AVV+I+   G 
Sbjct: 141 MASNSSSTTDQVVAYKEKWAQVVEGSDVVGIEDGTEVVTQMLTKGEMRRAVVSIVGMGGL 200

Query: 221 DKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQL 280
            KT      YN+  VK +FDC+AWV VS  +   ++L  II SVM  S        + +L
Sbjct: 201 GKTTLAKKVYNHSGVKRHFDCIAWVCVSQEFKPRELLLSIISSVMSLSNEEKKEMREVEL 260

Query: 281 KKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEME 340
               LR+ L +KKY +V+DDV+ + E WS L   LP+  NGS+VL+T  + ++ A     
Sbjct: 261 GGK-LRECLNDKKYLVVMDDVW-SIEAWSSLCSYLPESRNGSKVLMTTRNKEIAAQ---A 315

Query: 341 NGEKI 345
           NG ++
Sbjct: 316 NGHEV 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460001|ref|XP_003600282.1| Disease resistance protein [Medicago truncatula] gi|355489330|gb|AES70533.1| Disease resistance protein [Medicago truncatula]

 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 135/271 (49%), Gaps = 38/271 (14%)

Query: 91  EDVERADILEILEDINDFVHESEEAIDTFFINIMQQQNSENESESSTDMA----LLVELH 146
           +DVE   I ++++ + +  +  E+ +D + +   QQ +    +  + D+     L +++ 
Sbjct: 56  DDVEDKKIKDMIKQLIEASYHIEDVVDDYILLEEQQSSDPGCAAGAVDLVKTKILRLQIT 115

Query: 147 TKIIDIRNRMQQLP---PGDNGFDI------------SDKCNEIIHLLSEG---QPRLDI 188
            KI +I++R++++      D+GF+I            +++    +  L +        D+
Sbjct: 116 YKIQNIKSRIREIKETSAKDHGFNIQSSSDKPSSSSATNRNASFLQNLRDAPFYMDEADL 175

Query: 189 NEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVS 248
             FE  R++L DLL+EG +   VV+I+   G  KT      ++N  V  +FDC  W+ VS
Sbjct: 176 VGFEEPRDKLIDLLVEGRAERTVVSIVGMGGLGKTTIAKKVFDNQKVVKHFDCHVWITVS 235

Query: 249 IAYDFGKMLDDIIKSVMPPSRVSVIIGED-----YQLKKSIL----RDYLTNKKYFIVLD 299
             Y+  K+L +I+  +          GED     +Q+ +  L    R+YL  K+Y IV D
Sbjct: 236 RPYNIEKLLREILLDIYKQQ------GEDPPQSLHQMDRKPLVDEVRNYLQGKRYVIVFD 289

Query: 300 DVFDNSEIWSDLEELLPDDENGSRVLITVTD 330
           DV+D S  W D+E  + D++NG ++LIT  +
Sbjct: 290 DVWD-SHFWYDIEFAMIDNKNGCKILITTRN 319

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744819|emb|CBI38087.3| unnamed protein product [Vitis vinifera]

 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 119/245 (48%), Gaps = 20/245 (8%)

Query: 102 LEDINDFVHESEEAIDTFFINIMQQQNSENESESSTDMALLVELHTKIIDIRNRMQQLPP 161
           +  I D  +++E+ ID F   +  QQ    +      + L+ +L ++I +I  +++++  
Sbjct: 62  VSQIRDVTYDAEDVIDRFMFEMNHQQQGSLKCLKFLKLRLVHKLESRIREINTKIEKIKA 121

Query: 162 GDNGFDI-----SDKCNEIIHLLSEGQP---RLDINEFERGREELFDLLIEGPSGLAVVA 213
             + F +     +   NE++       P    +++   +   + +   L+ G    AVV+
Sbjct: 122 AKSTFVVETLPAASSPNEVVPHRERRAPIVEEVNVVGIQEDAKSVKQKLLNGEMRRAVVS 181

Query: 214 ILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVI 273
           I+   G  KT      YN++ V+  FDC AW+ VS  Y   ++L  I        RV ++
Sbjct: 182 IVGMGGLGKTTLAKKVYNDNDVQQCFDCHAWIYVSQEYTIRELLLGI------AVRVGIL 235

Query: 274 IGEDY-QLKKS----ILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITV 328
             E+  ++ +S     LRDYLT KKY IV+DD++ N E W  L    PD  NGSRVLIT 
Sbjct: 236 SEEERSKMNESDLGNSLRDYLTTKKYLIVMDDMWRN-EAWDRLGLYFPDSVNGSRVLITS 294

Query: 329 TDPDL 333
            + ++
Sbjct: 295 RNKEI 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489158|ref|XP_003633890.1| PREDICTED: putative disease resistance protein At1g50180-like [Vitis vinifera]

 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 10/240 (4%)

Query: 102 LEDINDFVHESEEAIDTFFINIMQQQNSENESESSTDMALLVELHTKIIDIRNRMQQLPP 161
           +  I D  +++E+ ID F   +  QQ    +      + L+ +L ++I +I  +++++  
Sbjct: 62  VSQIRDVTYDAEDVIDRFMFEMNHQQQGSLKCLKFLKLRLVHKLESRIREINTKIEKIKA 121

Query: 162 GDNGFDI-----SDKCNEIIHLLSEGQP---RLDINEFERGREELFDLLIEGPSGLAVVA 213
             + F +     +   NE++       P    +++   +   + +   L+ G    AVV+
Sbjct: 122 AKSTFVVETLPAASSPNEVVPHRERRAPIVEEVNVVGIQEDAKSVKQKLLNGEMRRAVVS 181

Query: 214 ILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVI 273
           I+   G  KT      YN++ V+  FDC AW+ VS  Y   ++L  I   V   S     
Sbjct: 182 IVGMGGLGKTTLAKKVYNDNDVQQCFDCHAWIYVSQEYTIRELLLGIAVRVGILSEEERS 241

Query: 274 IGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDL 333
              +  L  S LRDYLT KKY IV+DD++ N E W  L    PD  NGSRVLIT  + ++
Sbjct: 242 KMNESDLGNS-LRDYLTTKKYLIVMDDMWRN-EAWDRLGLYFPDSVNGSRVLITSRNKEI 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459971|ref|XP_003600267.1| Disease resistance protein [Medicago truncatula] gi|355489315|gb|AES70518.1| Disease resistance protein [Medicago truncatula]

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 156/311 (50%), Gaps = 40/311 (12%)

Query: 58  MAR-HLFQFIREEFDDSK-ISLPFLELLDLEESDEE----------DVERADILEILEDI 105
           +AR HL   ++E F+  + +     EL D  ES E+          DVE   I ++ + +
Sbjct: 18  LARDHLLPLLKEAFNMIRGVPKEIAELKDELESIEDFINDADRRSDDVEDKKIKDMTKQL 77

Query: 106 NDFVHESEEAIDTFFINIMQQQNSENESESSTDM----ALLVELHTKIIDIRNRMQQLPP 161
            +     E+ ID + I + + Q+SE    ++ D+     L +++  KI +I ++++++  
Sbjct: 78  IETSFHIEDVIDDY-IFLEEHQSSEPGCAAAVDLLKTTKLRLQIAYKIQNINSQIREIKE 136

Query: 162 ---GDNGFDI------------SDKCNEIIHLLSEGQPRLDINE---FERGREELFDLLI 203
               D+ FDI            +++   +   L +    +D  +   F+  R++L DLL+
Sbjct: 137 TSEKDHDFDIQSSLDKASSSSATNRNASLFQNLRDAPLYMDDADAVGFDVSRDKLIDLLV 196

Query: 204 EGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDII-K 262
           EG +   VV+I+   G  KT      ++N  V  +FDC  W+ VS  Y+  K+L DI+ +
Sbjct: 197 EGRAHRTVVSIVGMGGLGKTTLAKKVFDNQKVVKHFDCRLWITVSRPYNKEKLLKDILQQ 256

Query: 263 SVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGS 322
              PP  +  +   D +L    +R+YL  K+Y +V DDV+D S  W+D+E  + D++NG 
Sbjct: 257 GKCPPQSLHQM---DGKLLVDEVRNYLQGKRYVVVFDDVWD-SHFWNDIEFSMIDNKNGC 312

Query: 323 RVLITVTDPDL 333
           ++LIT  + D+
Sbjct: 313 KILITTRNEDV 323

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489148|ref|XP_003633887.1| PREDICTED: probable disease resistance RPP8-like protein 4-like [Vitis vinifera]

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 138/300 (46%), Gaps = 12/300 (4%)

Query: 43  SEIIATTLLGNYEADMARHLFQFIREEFDDSKISLPFLELLDLEESDEEDVERAD--ILE 100
           +E I T  L      +++  F   R E +  K+    LE + L   D +   R D  I  
Sbjct: 2   AESIVTVFLEKLTDLLSKEAFLLSRVE-EQVKLLSSELEWMRLFLKDADAKRRYDPRIKL 60

Query: 101 ILEDINDFVHESEEAIDTFFINIMQQQNSENESESSTDMALLVELHTKIIDIRNRMQQLP 160
            +  I D  +++E+ ID F   +  QQ    +      +  + +L ++I +I  +++++ 
Sbjct: 61  WVSQIRDVTYDAEDVIDRFMFEMNHQQQGSLKCLQFLKLRFVHKLESRIREINIKIEKIM 120

Query: 161 PGDNGFDI-----SDKCNEIIHLLSEGQPRLDIN--EFERGREELFDLLIEGPSGLAVVA 213
              + + +     +   NE +    +  P +++N    +   + +   L+ G    AVV+
Sbjct: 121 ANKSRYGVETLPAASSSNEAVPHKEKRAPIVEVNVVGIQEDAKSVKQNLLNGEMRRAVVS 180

Query: 214 ILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVI 273
           I+   G  KT      YN++ V+  FDC AW+ VS  Y   ++L  +   V   S     
Sbjct: 181 IVGMGGLGKTTLAKKVYNDNDVRQCFDCHAWIYVSQEYTIRELLLGVAVCVRILSEEERS 240

Query: 274 IGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDL 333
             ++ +L    LRDYLT KKY IVLDD++ N E W  L    PD  NGSRVLIT  + ++
Sbjct: 241 KMDESELGDR-LRDYLTTKKYLIVLDDMWRN-EAWDRLGLYFPDSVNGSRVLITSRNKEI 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577491|ref|XP_002529624.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223530909|gb|EEF32769.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 145/282 (51%), Gaps = 38/282 (13%)

Query: 85  LEESDEEDVERADILEILEDINDFVHESEEAIDTFFINIMQQQNSENESE---------- 134
           L +++++ V+   I + L  + D +  +E+ +D F    +++Q + N+            
Sbjct: 49  LLDAEQKQVKNHRIQDWLGKLRDVLCAAEDVLDDFECEALRRQVAANQGSTSRKVRGFFS 108

Query: 135 SSTDMALLVELHTKIIDIRNRMQQLPPGDNGFDISDKCN---------EIIHLLSEGQPR 185
           SS  +A  + +  KI  IR R+ ++    + F++++  +         E+ H     +  
Sbjct: 109 SSNPVAFRLRMGHKIKKIRERIVEIASLKSSFELTEGVHDTSVEIREREMTHSFVHAE-- 166

Query: 186 LDINEFERGREELFDLLIEGPS---GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCL 242
            D+   E  +E + + L E PS    L+V+ I+   G  KT      YN++ V+ YF+  
Sbjct: 167 -DVIGREADKEIIIEHLTENPSNGESLSVIPIVGIGGLGKTALAKLVYNDERVERYFELK 225

Query: 243 AWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDY------QLKKSILRDYLTNKKYFI 296
            W+ VS  ++  K+++ IIKS +     S   GE+Y      QL++ ++R+ ++ KKYF+
Sbjct: 226 MWICVSDDFNIKKLMEKIIKSAIN----STTFGENYSSLELDQLQR-VMREQISEKKYFL 280

Query: 297 VLDDVF-DNSEIWSDLEELLPDDENGSRVLITVTDPDLLASL 337
           VLDDV+ D+   W++L+ELL     GS++++T T   ++AS+
Sbjct: 281 VLDDVWNDDRTKWNELKELLRGCAYGSKIMVT-TRSKVVASI 321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489156|ref|XP_003633889.1| PREDICTED: probable disease resistance protein RDL6/RF9-like [Vitis vinifera]

 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 20/239 (8%)

Query: 102 LEDINDFVHESEEAIDTFFINIMQQQNSENESESSTDMALLVELHTKIIDIRNRMQQLPP 161
           +  I D  +++E+ ID F   +  QQ    +      + L+ +L ++I +I  +++++  
Sbjct: 62  VSQIRDVTYDAEDVIDRFMFEMNHQQQGSLKCLKFLKLRLVHKLESRIREINTKIEKIKA 121

Query: 162 GDNGFDI-----SDKCNEIIHLLSEGQP---RLDINEFERGREELFDLLIEGPSGLAVVA 213
             + F +     +   NE++       P    +++   +   + +   L+ G    AVV+
Sbjct: 122 AKSTFIVETLPAASWPNEVVPHRERRAPIVEEVNVVGIQEDAKSVKQKLLNGEMRRAVVS 181

Query: 214 ILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVI 273
           I+   G  KT      YN++ V+  FDC AW+ VS  Y   ++L  +        RV ++
Sbjct: 182 IVGMGGLGKTTLAKKVYNDNDVQQCFDCHAWIYVSQEYTIRELLLGV------AVRVGIL 235

Query: 274 IGEDY-QLKKS----ILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLIT 327
             E+  ++ +S     LRDYLT KKY IV+DD++ N E W  L    PD  NGSRVLIT
Sbjct: 236 SEEERSKMNESDLGNSLRDYLTTKKYLIVMDDMWRN-EAWDRLGLYFPDSVNGSRVLIT 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721361|ref|NP_001235671.1| NBS-LRR type disease resistance protein [Glycine max] gi|223452621|gb|ACM89637.1| NBS-LRR type disease resistance protein [Glycine max]

 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 122/241 (50%), Gaps = 11/241 (4%)

Query: 102 LEDINDFVHESEEAIDTFFINIMQQQNSENESESSTDMALLVELHTKIIDIRNRMQQLPP 161
           ++ + D  H+ E+AID F + ++ Q    N S    +  +   + + I +I++R+  +  
Sbjct: 62  VKRVRDVAHDMEDAIDEFSLRLVDQHGQGNSSSFHVNFFIRHRIASNIQNIKSRVDIISQ 121

Query: 162 GD-NGFDISDKCNEIIHLLSEGQPRL----DINEFERGREELFDLLIEGPSGLAVVAILD 216
           G  N   I    ++ + L S+G   L    D+   ++ + +L DLL    +G AV+ I  
Sbjct: 122 GRPNIAGIGSGSSQRLRLDSQGDALLLEEADLVGIDKPKRQLSDLLFNEEAGRAVIPIYG 181

Query: 217 SSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS----VMPPSRVSV 272
             G  KT      Y++  VK  F   AW+ VS ++    +L D+++     +  PS  +V
Sbjct: 182 MGGLGKTTLAKQVYDDPKVKKRFRIHAWINVSQSFQLEVLLKDLVQQLHNVIGKPSPEAV 241

Query: 273 IIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPD 332
              +  QLK+ ++++ L   +Y IVLDDV+ + ++W  ++  LP++  GSRV++T    D
Sbjct: 242 GQMKSDQLKE-LIKNLLQQSRYLIVLDDVW-HVKVWDSVKLALPNNNRGSRVMLTTRKKD 299

Query: 333 L 333
           +
Sbjct: 300 I 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
TAIR|locus:504956483	847	AT3G46730 [Arabidopsis thalian	0.553	0.257	0.268	3.9e-10
UNIPROTKB|Q84UB1	928	Pi-ta "Pi-ta protein" [Oryza s	0.350	0.148	0.319	1.2e-08
UNIPROTKB|Q9AY26	928	Pi-ta "Pi-ta protein" [Oryza s	0.350	0.148	0.319	1.2e-08
TAIR|locus:2077572	926	RPM1 "RESISTANCE TO P. SYRINGA	0.322	0.137	0.320	2e-08
TAIR|locus:2025916	906	AT1G59780 "AT1G59780" [Arabido	0.654	0.284	0.238	2.5e-08
TAIR|locus:2075170	835	RPP13 "RECOGNITION OF PERONOSP	0.687	0.324	0.228	4.9e-08
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.568	0.248	0.231	7e-08
TAIR|locus:2078012	852	ZAR1 "HOPZ-ACTIVATED RESISTANC	0.350	0.161	0.267	6.4e-07
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.568	0.246	0.225	9e-07
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.568	0.246	0.229	1.2e-06

TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 3.9e-10, P = 3.9e-10
 Identities = 65/242 (26%), Positives = 102/242 (42%)

Query:   107 DFVHESEEAIDTFFINIMXXXXXXXXXXXXT------DMALLVE----LHTKIIDIRNRM 156
             D  ++ E+ +DT+F+ +                    D   +VE    L  +I+DI  + 
Sbjct:    67 DIAYDIEDVLDTYFLKLEERSLRRGLLRLTNKIGKKRDAYNIVEDIRTLKRRILDITRKR 126

Query:   157 QQLPPGDNGFDISDKCNEI-IHLLSEGQPRLDINEFERGREE-----LFDLLIEGPSGLA 210
             +    G       +    + +  L    P +D  E   G E+     L  LL +     +
Sbjct:   127 ETFGIGSFNEPRGENITNVRVRQLRRAPP-VDQEELVVGLEDDVKILLVKLLSDNEKDKS 185

Query:   211 -VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS--VMPP 267
              +++I    G  KT      YN+  VK  FDC AW  VS  Y    +L  II+S  ++  
Sbjct:   186 YIISIFGMGGLGKTALARKLYNSGDVKRRFDCRAWTYVSQEYKTRDILIRIIRSLGIVSA 245

Query:   268 SRVSVI--IGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVL 325
               +  I    ED +L+   L   L  K Y +V+DDV+D  + W  L+  LP D  GS+V+
Sbjct:   246 EEMEKIKMFEEDEELEV-YLYGLLEGKNYMVVVDDVWD-PDAWESLKRALPCDHRGSKVI 303

Query:   326 IT 327
             IT
Sbjct:   304 IT 305

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|Q84UB1 Pi-ta "Pi-ta protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 163 (62.4 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 46/144 (31%), Positives = 79/144 (54%)

Query:   196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTY--NNDHVKFYFDCLAWVRVSIAYDF 253
             ++L   L +G   L V +I+ S G  KT    + Y  +   +   FDC A+VR     D 
Sbjct:   216 QKLVRWLADGEPKLKVASIVGSGGVGKTTLATEFYRLHGRRLDAPFDCRAFVRTPRKPDM 275

Query:   254 GKMLDDIIKSVMPPSR-VSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLE 312
              K+L D++  + P  +  S  + E  +L ++I R +L +K+YFI+++D++ +S +W  + 
Sbjct:   276 TKILTDMLSQLRPQHQHQSSDVWEVDRLLETI-RTHLQDKRYFIIIEDLWASS-MWDIVS 333

Query:   313 ELLPDDENGSRVLITVT-DPDLLA 335
               LPD+ + SR+LIT   +P  LA
Sbjct:   334 RGLPDNNSCSRILITTEIEPVALA 357

GO:0006952 "defense response" evidence=IMP

UNIPROTKB|Q9AY26 Pi-ta "Pi-ta protein" [Oryza sativa (taxid:4530)]

 Score = 163 (62.4 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 46/144 (31%), Positives = 79/144 (54%)

Query:   196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTY--NNDHVKFYFDCLAWVRVSIAYDF 253
             ++L   L +G   L V +I+ S G  KT    + Y  +   +   FDC A+VR     D 
Sbjct:   216 QKLVRWLADGEPKLKVASIVGSGGVGKTTLATEFYRLHGRRLDAPFDCRAFVRTPRKPDM 275

Query:   254 GKMLDDIIKSVMPPSR-VSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLE 312
              K+L D++  + P  +  S  + E  +L ++I R +L +K+YFI+++D++ +S +W  + 
Sbjct:   276 TKILTDMLSQLRPQHQHQSSDVWEVDRLLETI-RTHLQDKRYFIIIEDLWASS-MWDIVS 333

Query:   313 ELLPDDENGSRVLITVT-DPDLLA 335
               LPD+ + SR+LIT   +P  LA
Sbjct:   334 RGLPDNNSCSRILITTEIEPVALA 357

GO:0006952 "defense response" evidence=IMP

TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 43/134 (32%), Positives = 71/134 (52%)

Query:   201 LLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDI 260
             LL   P  + VVA++   G  KT  +A+ + +  V+ +F+  AWV +S +Y    +   +
Sbjct:   186 LLSPEPQRI-VVAVVGMGGSGKTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTM 244

Query:   261 IKSVMPPSRVSVIIGEDYQL--KKSI--LRDYLTNKKYFIVLDDVFDNSEIWSDLEELLP 316
             IK     +    I  E Y L  ++ +  L +YL +K+Y +VLDDV+    +W ++   LP
Sbjct:   245 IKEFYKEADTQ-IPAELYSLGYRELVEKLVEYLQSKRYIVVLDDVWTTG-LWREISIALP 302

Query:   317 DDENGSRVLITVTD 330
             D   GSRV++T  D
Sbjct:   303 DGIYGSRVMMTTRD 316

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IDA

TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 65/273 (23%), Positives = 117/273 (42%)

Query:    63 FQFIREEFDDSKISLPFXXXXXXXXXXXXXXXRADILEILEDINDFVHESEEAIDTFFIN 122
             FQ + E+  + +  L                 RA     LE+I +  +++E+ I+ F + 
Sbjct:    29 FQGVEEQITELRDDLKMLMAFLSDADAKKQT-RALARNCLEEIKEITYDAEDIIEIFLLK 87

Query:   123 -IMXXXXXXXXXXXXTDMAL-LVELHTKIIDIRNRMQQLP-PGD--NGFDIS---DKCNE 174
               +             ++AL +  +  +I  +   MQ L    D  +G D     ++  E
Sbjct:    88 GSVNMRSLACFPGGRREIALQITSISKRISKVIQVMQNLGIKSDIMDGVDSHAQLERKRE 147

Query:   175 IIHLLSEGQPRLDINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDH 234
             + H  S  +   ++   E+  E+L + L+   S   V +I    G  KT      +++D 
Sbjct:   148 LRHTFSS-ESESNLVGLEKNVEKLVEELVGNDSSHGV-SITGLGGLGKTTLARQIFDHDK 205

Query:   235 VKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKY 294
             VK +FD LAWV VS  +    +   I+ ++ P  + S +  +D Q K   L   L  KK 
Sbjct:   206 VKSHFDGLAWVCVSQEFTRKDVWKTILGNLSPKYKDSDLPEDDIQKK---LFQLLETKKA 262

Query:   295 FIVLDDVFDNSEIWSDLEELLPDDENGSRVLIT 327
              IV DD++   + W  +  + P+ + G +VL+T
Sbjct:   263 LIVFDDLWKRED-WYRIAPMFPERKAGWKVLLT 294

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 68/298 (22%), Positives = 119/298 (39%)

Query:    51 LGNYEADMARHLFQFIREEFDDSKISLPFXXXXXXXXXXXXXXXRADILEILEDINDFVH 110
             +GNY  + A  +F  ++E+ ++ K  L                      E  + + DF +
Sbjct:    13 IGNYLIEEAS-MFMAVKEDLEELKTELTCIHGYLKDVEAREREDEVS-KEWSKLVLDFAY 70

Query:   111 ESEEAIDTFFINIMXXXXXXXXXXXXT------DMALLVE----LHTKIIDIRNRMQQL- 159
             + E+ +DT+ + +                    D   +V+    L  +I+DI  + +   
Sbjct:    71 DVEDVLDTYHLKLEERSQRRGLRRLTNKIGRKMDAYSIVDDIRILKRRILDITRKRETYG 130

Query:   160 -----PPGDNGFDISDKCNEIIHLLSEGQPRLDINEFERGREELFDLLIEGPSGLAVVAI 214
                   P   G   S +  ++    S  Q  + +   +  +  L  LL        +++I
Sbjct:   131 IGGLKEPQGGGNTSSLRVRQLRRARSVDQEEVVVGLEDDAKILLEKLLDYEEKNRFIISI 190

Query:   215 LDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPS-----R 269
                 G  KT      YN+  VK  F+  AW  VS  Y  G +L  II+S+   S     +
Sbjct:   191 FGMGGLGKTALARKLYNSRDVKERFEYRAWTYVSQEYKTGDILMRIIRSLGMTSGEELEK 250

Query:   270 VSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLIT 327
             +     E+ ++    L   L  KKY +V+DD+++  E W  L+  LP +  GSRV+IT
Sbjct:   251 IRKFAEEELEV---YLYGLLEGKKYLVVVDDIWER-EAWDSLKRALPCNHEGSRVIIT 304

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 57/246 (23%), Positives = 105/246 (42%)

Query:    98 ILEILEDINDFVHESEEAIDTFFINIMXXXXXXXXXXXXTDMALLVELHTKIIDIRN--- 154
             +   LED+ D V ++E+ I+++ +N +                 L + H    DI     
Sbjct:    58 VRNFLEDVKDLVFDAEDIIESYVLNKLRGEGKGVKNHVRRLACFLTDRHKVASDIEGITK 117

Query:   155 RM-------------QQLPPGDNGFDISDKCNEIIHLLSEGQPRLDINEFERGREELFDL 201
             R+             QQ+  G     + D   EI           D+   E+  EEL   
Sbjct:   118 RISKVIGEMQSLGIQQQIIDGGRSLSLQDIQREIRQTFPNSSES-DLVGVEQSVEELVGP 176

Query:   202 LIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDII 261
             ++E    + VV+I    G  KT      +++D V+ +FD  AWV VS  +    +   I+
Sbjct:   177 MVE-IDNIQVVSISGMGGIGKTTLARQIFHHDLVRRHFDGFAWVCVSQQFTQKHVWQRIL 235

Query:   262 KSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENG 321
             + + P     ++  ++Y ++  + +  L   +Y +VLDDV+   E W  ++E+ P  + G
Sbjct:   236 QELRPHDG-EILQMDEYTIQGKLFQ-LLETGRYLVVLDDVW-KEEDWDRIKEVFPR-KRG 291

Query:   322 SRVLIT 327
              ++L+T
Sbjct:   292 WKMLLT 297

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 6.4e-07, P = 6.4e-07
 Identities = 39/146 (26%), Positives = 72/146 (49%)

Query:   207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP 266
             S L ++A +   G  KT    + +N+  ++  F+   WV VS  +   +++  I++++  
Sbjct:   180 SQLLIMAFVGMGGLGKTTIAQEVFNDKEIEHRFERRIWVSVSQTFTEEQIMRSILRNLGD 239

Query:   267 PSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVL 325
              S     +G+D       ++ YL  K+Y IV+DDV+D N   W  + + LP  + GS V+
Sbjct:   240 AS-----VGDDIGTLLRKIQQYLLGKRYLIVMDDVWDKNLSWWDKIYQGLPRGQGGS-VI 293

Query:   326 ITVTDPDLLASLEMENGEKIRRDSVL 351
             +T T  + +A       +K  R  +L
Sbjct:   294 VT-TRSESVAKRVQARDDKTHRPELL 318

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 9.0e-07, P = 9.0e-07
 Identities = 56/248 (22%), Positives = 109/248 (43%)

Query:    98 ILEILEDINDFVHESEEAIDTFFINIMXXXXXXXXXXXXTDMALLVELH---------TK 148
             +   LED+ D V ++E+ I+++ +N +                 L + H         TK
Sbjct:    58 VRNFLEDVKDLVFDAEDIIESYVLNKLSGKGKGVKKHVRRLACFLTDRHKVASDIEGITK 117

Query:   149 -IIDIRNRMQ-----QLPPGDNGFDISDKCNEIIHLLSEGQP---RLDINEFERGREELF 199
              I ++   MQ     Q+  G     + ++   +   + +  P     D+   E+  +EL 
Sbjct:   118 RISEVIGEMQSFGIQQIIDGGRSLSLQER-QRVQREIRQTYPDSSESDLVGVEQSVKELV 176

Query:   200 DLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD 259
               L+E      VV+I    G  KT      +++D V+ +FD  AWV VS  +    +   
Sbjct:   177 GHLVENDVH-QVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTQKHVWQR 235

Query:   260 IIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDE 319
             I++ + P     ++  ++Y L++ + +  L   +Y +VLDDV+   E W  ++ + P  +
Sbjct:   236 ILQELQPHDG-DILQMDEYALQRKLFQ-LLEAGRYLVVLDDVW-KKEDWDVIKAVFPR-K 291

Query:   320 NGSRVLIT 327
              G ++L+T
Sbjct:   292 RGWKMLLT 299

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 57/248 (22%), Positives = 108/248 (43%)

Query:    98 ILEILEDINDFVHESEEAIDTFFINIMXXXXXXXXXXXXTDMALLVELH---------TK 148
             +   LED+ D V ++E+ I+++ +N +                 L + H         TK
Sbjct:    58 VRNFLEDVKDLVFDAEDIIESYVLNKLRGEGKGVKKHVRRLARFLTDRHKVASDIEGITK 117

Query:   149 -IIDIRNRMQ-----QLPPGDNGFDISDKCNEIIHLLSEGQP---RLDINEFERGREELF 199
              I D+   MQ     Q+  G     + ++   +   + +  P     D+   E+  EEL 
Sbjct:   118 RISDVIGEMQSFGIQQIIDGVRSLSLQER-QRVQREIRQTYPDSSESDLVGVEQSVEELV 176

Query:   200 DLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD 259
               L+E      VV+I    G  KT      +++D V+ +FD  AWV VS  +    +   
Sbjct:   177 GHLVENDI-YQVVSIAGMGGIGKTTLARQVFHHDLVRRHFDGFAWVCVSQQFTLKHVWQR 235

Query:   260 IIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDE 319
             I++ + P    +++  ++  L+  + +  L   +Y +VLDDV+   E W  ++ + P  +
Sbjct:   236 ILQELQPHDG-NILQMDESALQPKLFQ-LLETGRYLLVLDDVW-KKEDWDRIKAVFPR-K 291

Query:   320 NGSRVLIT 327
              G ++L+T
Sbjct:   292 RGWKMLLT 299

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026851001 SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (914 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	394
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	1e-15

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK 255
           E L + L+E    L VV I+   G  KT      YN+D V  +FD +AWV VS  Y   +
Sbjct: 6   EALIEKLLEMSDNLGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFR 65

Query: 256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELL 315
           +  DI++ +       V   ++       +++ L  K++ +VLDDV      W  +    
Sbjct: 66  LQKDILQELGLDDSDWV--EKNESELAVKIKEALLRKRFLLVLDDV-WEKNDWDKIGVPF 122

Query: 316 PDDENGSRVLIT 327
           PD ENGSRV++T
Sbjct: 123 PDGENGSRVIVT 134

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	394
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PF05729	166	NACHT: NACHT domain	99.24
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.13
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.03
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.94
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.92
COG2256	436	MGS1 ATPase related to the helicase subunit of the	98.86
PRK06893	229	DNA replication initiation factor; Validated	98.8
PF13173	128	AAA_14: AAA domain	98.79
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.7
PRK13342	413	recombination factor protein RarA; Reviewed	98.7
cd01128	249	rho_factor Transcription termination factor rho is	98.65
PRK04841	903	transcriptional regulator MalT; Provisional	98.65
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.63
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.62
KOG2028	554	consensus ATPase related to the helicase subunit o	98.58
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.55
PRK13341	725	recombination factor protein RarA/unknown domain f	98.52
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.51
PRK12402	337	replication factor C small subunit 2; Reviewed	98.51
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.5
PRK09376	416	rho transcription termination factor Rho; Provisio	98.47
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.47
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.46
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.44
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	98.41
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.41
PRK08727	233	hypothetical protein; Validated	98.39
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.38
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.36
PTZ00202	550	tuzin; Provisional	98.35
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.35
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	98.35
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.35
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.33
PLN03025	319	replication factor C subunit; Provisional	98.31
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.31
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.3
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.3
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.29
TIGR00767	415	rho transcription termination factor Rho. Members	98.28
PRK08084	235	DNA replication initiation factor; Provisional	98.25
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.24
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.22
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.21
PRK04195	482	replication factor C large subunit; Provisional	98.21
PRK09087	226	hypothetical protein; Validated	98.19
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.17
PHA02544	316	44 clamp loader, small subunit; Provisional	98.17
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.17
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	98.16
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.16
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.15
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.15
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.12
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.12
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.1
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	98.1
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.1
CHL00181	287	cbbX CbbX; Provisional	98.1
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.08
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.08
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	98.07
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.07
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.05
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.05
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.04
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.04
PRK07471	365	DNA polymerase III subunit delta'; Validated	98.03
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.02
PRK05642	234	DNA replication initiation factor; Validated	98.01
PF00004	132	AAA: ATPase family associated with various cellula	97.99
PRK09112	351	DNA polymerase III subunit delta'; Validated	97.96
PRK14087	450	dnaA chromosomal replication initiation protein; P	97.95
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.93
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	97.93
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	97.91
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.9
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	97.9
smart00382	148	AAA ATPases associated with a variety of cellular	97.9
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	97.89
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	97.88
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.87
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.87
PRK08116	268	hypothetical protein; Validated	97.86
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	97.84
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	97.83
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.83
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.83
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	97.82
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	97.82
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.81
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.77
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	97.76
PRK08181	269	transposase; Validated	97.75
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.75
CHL00095	821	clpC Clp protease ATP binding subunit	97.74
PRK12422	445	chromosomal replication initiation protein; Provis	97.73
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.73
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	97.73
PRK14086	617	dnaA chromosomal replication initiation protein; P	97.72
PRK06620	214	hypothetical protein; Validated	97.71
PRK14088	440	dnaA chromosomal replication initiation protein; P	97.7
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	97.7
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.65
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	97.64
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	97.64
PRK10536	262	hypothetical protein; Provisional	97.63
PRK08118	167	topology modulation protein; Reviewed	97.63
PRK10865	857	protein disaggregation chaperone; Provisional	97.62
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	97.61
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.6
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	97.57
PRK08058	329	DNA polymerase III subunit delta'; Validated	97.56
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.56
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	97.54
PRK07952	244	DNA replication protein DnaC; Validated	97.54
PRK07399	314	DNA polymerase III subunit delta'; Validated	97.54
PRK06526	254	transposase; Provisional	97.53
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.52
PRK12608	380	transcription termination factor Rho; Provisional	97.52
PRK12377	248	putative replication protein; Provisional	97.52
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	97.51
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.51
PRK05707	328	DNA polymerase III subunit delta'; Validated	97.5
PRK10865	857	protein disaggregation chaperone; Provisional	97.49
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.48
CHL00176	638	ftsH cell division protein; Validated	97.48
PRK08939	306	primosomal protein DnaI; Reviewed	97.44
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.42
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	97.41
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.4
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.4
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	97.4
PRK09183	259	transposase/IS protein; Provisional	97.39
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	97.35
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.35
CHL00095	821	clpC Clp protease ATP binding subunit	97.34
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	97.33
PRK06835	329	DNA replication protein DnaC; Validated	97.33
COG3899	849	Predicted ATPase [General function prediction only	97.32
PHA00729	226	NTP-binding motif containing protein	97.31
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.25
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.24
COG0593	408	DnaA ATPase involved in DNA replication initiation	97.23
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.23
PRK06921	266	hypothetical protein; Provisional	97.23
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.23
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	97.22
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.21
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.21
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	97.21
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.2
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.19
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.18
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.17
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.15
COG3903	414	Predicted ATPase [General function prediction only	97.13
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.12
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.12
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.1
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.07
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.07
PRK04296	190	thymidine kinase; Provisional	97.07
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.05
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.05
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.04
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	97.04
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.03
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	97.02
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	97.02
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.01
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	97.01
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.01
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.01
PRK07261	171	topology modulation protein; Provisional	97.0
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	96.98
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.97
PRK06696	223	uridine kinase; Validated	96.97
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.96
KOG2228	408	consensus Origin recognition complex, subunit 4 [R	96.96
PRK07667	193	uridine kinase; Provisional	96.95
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.95
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.95
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	96.94
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.94
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.93
CHL00195	489	ycf46 Ycf46; Provisional	96.93
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	96.93
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	96.93
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	96.93
PRK05541	176	adenylylsulfate kinase; Provisional	96.92
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.92
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.91
COG1875	436	NYN ribonuclease and ATPase of PhoH family domains	96.91
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.91
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.9
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.9
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	96.9
cd03246	173	ABCC_Protease_Secretion This family represents the	96.9
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	96.89
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	96.88
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.88
PRK11608	326	pspF phage shock protein operon transcriptional ac	96.87
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.87
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.85
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.85
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	96.84
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	96.84
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	96.84
PRK06871	325	DNA polymerase III subunit delta'; Validated	96.84
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	96.83
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.83
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.83
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	96.82
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.82
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.82
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.81
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	96.81
PF10443	431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	96.81
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.8
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	96.8
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	96.8
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.8
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	96.8
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	96.79
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	96.79
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	96.78
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	96.78
PRK13695	174	putative NTPase; Provisional	96.78
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	96.78
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	96.77
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	96.77
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.77
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	96.77
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.76
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.76
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.76
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.76
cd00983	325	recA RecA is a bacterial enzyme which has roles in	96.75
PRK08769	319	DNA polymerase III subunit delta'; Validated	96.75
COG1484	254	DnaC DNA replication protein [DNA replication, rec	96.75
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	96.75
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	96.74
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.74
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	96.74
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	96.73
PRK09354	349	recA recombinase A; Provisional	96.73
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	96.72
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.72
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.71
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.71
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.7
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	96.7
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	96.69
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	96.68
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	96.68
PRK10908	222	cell division protein FtsE; Provisional	96.67
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	96.66
PRK06762	166	hypothetical protein; Provisional	96.66
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	96.66
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	96.66
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.66
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.65
PRK06090	319	DNA polymerase III subunit delta'; Validated	96.65
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	96.65
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.64
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.63
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	96.62
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	96.62
PF14516	331	AAA_35: AAA-like domain	96.61
PRK06964	342	DNA polymerase III subunit delta'; Validated	96.61
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.6
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	96.6
KOG1969	877	consensus DNA replication checkpoint protein CHL12	96.6
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.59
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	96.59
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	96.59
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.58
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.57
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.57
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.57
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	96.57
PRK08699	325	DNA polymerase III subunit delta'; Validated	96.56
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	96.55
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.55
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	96.54
PRK06067	234	flagellar accessory protein FlaH; Validated	96.54
PRK15455	644	PrkA family serine protein kinase; Provisional	96.54
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.53
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	96.53
PRK13537	306	nodulation ABC transporter NodI; Provisional	96.52
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	96.51
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	96.5
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.5
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	96.49
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	96.49
PRK15064	530	ABC transporter ATP-binding protein; Provisional	96.49
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	96.48
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	96.48
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	96.48
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	96.47
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	96.46
PRK04301	317	radA DNA repair and recombination protein RadA; Va	96.46
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.46
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.46
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	96.45
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	96.45
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.44
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.44
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	96.44
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	96.43
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	96.43
PRK13409	590	putative ATPase RIL; Provisional	96.43
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	96.43
COG0488	530	Uup ATPase components of ABC transporters with dup	96.42
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.42
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	96.42
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.42
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	96.42
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	96.41
KOG1514	767	consensus Origin recognition complex, subunit 1, a	96.41
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	96.41
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	96.4
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.4
KOG0924	1042	consensus mRNA splicing factor ATP-dependent RNA h	96.39
PRK10867	433	signal recognition particle protein; Provisional	96.39
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	96.38
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	96.38
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	96.38
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	96.38
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	96.37
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.37
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	96.37
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	96.37
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.36
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	96.36
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	96.35
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	96.35
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	96.34
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.33
PTZ00301	210	uridine kinase; Provisional	96.33
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.33
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.32
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	96.32
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	96.32
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	96.32
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	96.31
TIGR00959	428	ffh signal recognition particle protein. This mode	96.31
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	96.31
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	96.31
PRK13546	264	teichoic acids export protein ATP-binding subunit;	96.31
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	96.3
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.3
PRK05022	509	anaerobic nitric oxide reductase transcription reg	96.29
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	96.29
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	96.29
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	96.28
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	96.28
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	96.28
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	96.28
PRK07993	334	DNA polymerase III subunit delta'; Validated	96.28
PRK05480	209	uridine/cytidine kinase; Provisional	96.27
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.27
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	96.26
PRK10938	490	putative molybdenum transport ATP-binding protein	96.26
TIGR02236	310	recomb_radA DNA repair and recombination protein R	96.26
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	96.26
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.26
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.26
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	96.24
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	96.24
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	96.24
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.23
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	96.22
PRK08233	182	hypothetical protein; Provisional	96.22
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	96.21
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.21
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	96.2
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	96.2
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	96.2
PRK14974	336	cell division protein FtsY; Provisional	96.2
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	96.19
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	96.19
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	96.19
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	96.18
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.17
PRK09984	262	phosphonate/organophosphate ester transporter subu	96.17
cd03299	235	ABC_ModC_like Archeal protein closely related to M	96.16
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	96.15
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	96.14
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.14
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	96.13
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	96.13
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.12
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	96.12
PRK13531	498	regulatory ATPase RavA; Provisional	96.11
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.1
PRK00279	215	adk adenylate kinase; Reviewed	96.1
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.1
PRK13536	340	nodulation factor exporter subunit NodI; Provision	96.1
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	96.1
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	96.1
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	96.09
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	96.08
PTZ00035	337	Rad51 protein; Provisional	96.08
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	96.07
PRK11147	635	ABC transporter ATPase component; Reviewed	96.07
PF00154	322	RecA: recA bacterial DNA recombination protein; In	96.05
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	96.05
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	96.05
PF05659	147	RPW8: Arabidopsis broad-spectrum mildew resistance	96.05
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	96.04
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	96.04
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	96.04
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	96.04
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.04
COG0488	530	Uup ATPase components of ABC transporters with dup	96.03
PRK06547	172	hypothetical protein; Provisional	96.02
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	96.02
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.02
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	96.01
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	96.01
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	96.01
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	96.01
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	96.01
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	96.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	95.99
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	95.97
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	95.97
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	95.95
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	95.94
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	95.94
PHA02244	383	ATPase-like protein	95.93
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	95.93
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	95.92
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	95.92
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	95.92
PRK13409	590	putative ATPase RIL; Provisional	95.92
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	95.92
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.91
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	95.9
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.9
PTZ00088	229	adenylate kinase 1; Provisional	95.89
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	95.88
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	95.87
PRK15064	530	ABC transporter ATP-binding protein; Provisional	95.87
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	95.87
PRK14527	191	adenylate kinase; Provisional	95.86
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	95.86
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	95.83
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	95.83
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.83
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	95.83
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	95.83
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	95.83
PRK03839	180	putative kinase; Provisional	95.82
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	95.82
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	95.82
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	95.82
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	95.82
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	95.81
PRK14738	206	gmk guanylate kinase; Provisional	95.8
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	95.8
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	95.8
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	95.8
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	95.79
COG2884	223	FtsE Predicted ATPase involved in cell division [C	95.79
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	95.79
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	95.78
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	95.78
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	95.78
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	95.77
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	95.77
KOG0927	614	consensus Predicted transporter (ABC superfamily)	95.77
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	95.76
PRK04132	846	replication factor C small subunit; Provisional	95.76
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	95.75
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	95.74
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	95.74
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	95.73
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	95.72
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	95.72
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	95.71
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	95.7
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	95.7
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	95.7
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.69
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	95.67
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	95.67
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	95.66
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	95.66
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	95.65
PRK05439	311	pantothenate kinase; Provisional	95.65
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	95.64
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	95.64
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	95.63
COG2842	297	Uncharacterized ATPase, putative transposase [Gene	95.63

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-38  Score=335.13  Aligned_cols=308  Identities=20%  Similarity=0.270  Sum_probs=245.7

Q ss_pred             HHHHHHHHHHHHHhhhhhcccccccccccccccChHHHHHHHHHHHHhhhhHhHhhhhHHhhhhcC--C----------c
Q 016120           62 LFQFIREEFDDSKISLPFLELLDLEESDEEDVERADILEILEDINDFVHESEEAIDTFFINIMQQQ--N----------S  129 (394)
Q Consensus        62 l~~~~~~~l~~L~~~L~~i~~~~l~~ae~~~~~~~~~~~Wl~~l~~~a~d~eD~lD~~~~~~~~~~--~----------~  129 (394)
                      .+.+.++.+..|+++|..++.+ +++++.++........|.+.+++++|++||.++.|..+....+  .          .
T Consensus        22 ~~~~~~~~i~~Lk~~L~~l~~~-l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~  100 (889)
T KOG4658|consen   22 CLDGKDNYILELKENLKALQSA-LEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQR  100 (889)
T ss_pred             HHhchHHHHHHHHHHHHHHHHH-HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHH
Confidence            5678888999999999999999 9999999999999999999999999999999999988776643  1          1


Q ss_pred             ce-eccccchhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCccccccCCCCCCCc---ccceecccHHHHHHHHhcC
Q 016120          130 EN-ESESSTDMALLVELHTKIIDIRNRMQQLPPGDNGFDISDKCNEIIHLLSEGQPRL---DINEFERGREELFDLLIEG  205 (394)
Q Consensus       130 ~~-~~~~~~~~~~r~~i~~~i~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Gr~~~~~~i~~~L~~~  205 (394)
                      ++ ...+..+....+.+.+++-++...++.+..+.. +... .....+...++..+..   + ||.+..++++.+.|.++
T Consensus       101 ~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~-~~~~-~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d  177 (889)
T KOG4658|consen  101 LCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGV-FEVV-GESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMED  177 (889)
T ss_pred             HhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccc-eecc-cccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccC
Confidence            11 112223333445555566665555555542221 1100 1101122233333333   4 99999999999999988


Q ss_pred             CCCceEEEEEcCCCccHHHHHHHHhcCcc-cccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHH
Q 016120          206 PSGLAVVAILDSSGFDKTVFTADTYNNDH-VKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKS  283 (394)
Q Consensus       206 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~  283 (394)
                      +.  .+++|+||||+||||||+.++|+.. ++++|+.++||+||++++...++.+|+..++....   .... +.++++.
T Consensus       178 ~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~---~~~~~~~~~~~~  252 (889)
T KOG4658|consen  178 DV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE---EWEDKEEDELAS  252 (889)
T ss_pred             CC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc---ccchhhHHHHHH
Confidence            64  8999999999999999999999987 99999999999999999999999999999988554   2233 5578999


Q ss_pred             HHHHHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcCCCceeeCCccCCCCCCCChHHH
Q 016120          284 ILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEA  363 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~  363 (394)
                      .+.+.|++|||||||||||+ ..+|+.+..++|...+||||++|||++.||..+  .+....++     ++.|  +.+||
T Consensus       253 ~i~~~L~~krfllvLDDIW~-~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~--m~~~~~~~-----v~~L--~~~ea  322 (889)
T KOG4658|consen  253 KLLNLLEGKRFLLVLDDIWE-EVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRA--MGVDYPIE-----VECL--TPEEA  322 (889)
T ss_pred             HHHHHhccCceEEEEecccc-cccHHhcCCCCCCccCCeEEEEEeccHhhhhcc--ccCCcccc-----cccc--Ccccc
Confidence            99999999999999999999 999999999999999999999999999999993  26688999     9999  99999


Q ss_pred             HHHHHHHhCCCCCCCCcCCCchhhhhhc
Q 016120          364 WQFFILHYGSMPLENYLQGEAIPTVGDN  391 (394)
Q Consensus       364 ~~Lf~~~~~~~~~~~~~~~~~~~~vg~~  391 (394)
                      |.||++.+|......++.   ++++||.
T Consensus       323 W~LF~~~v~~~~~~~~~~---i~~lak~  347 (889)
T KOG4658|consen  323 WDLFQKKVGPNTLGSHPD---IEELAKE  347 (889)
T ss_pred             HHHHHHhhcccccccccc---HHHHHHH
Confidence            999999988766566555   6666653

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.96  E-value=7.4e-29  Score=234.65  Aligned_cols=171  Identities=30%  Similarity=0.475  Sum_probs=140.8

Q ss_pred             ecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 016120          191 FERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV  270 (394)
Q Consensus       191 r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~  270 (394)
                      ||.++++|.++|...+++.++|+|+||||+||||||+.++++..++.+|+.++|+++++..+...++..|+..++.... 
T Consensus         1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~-   79 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS-   79 (287)
T ss_dssp             -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S-
T ss_pred             CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccc-
Confidence            7889999999999866789999999999999999999999976699999999999999999999999999999998854 


Q ss_pred             cccc-Cc-CHHHHHHHHHHHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcCCCceeeC
Q 016120          271 SVII-GE-DYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRRD  348 (394)
Q Consensus       271 ~~~~-~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~~  348 (394)
                        +. .. +.......+.+.|+++++||||||||+ ...|+.+...++....||+||||||+..++..+  ......++ 
T Consensus        80 --~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~-~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~--~~~~~~~~-  153 (287)
T PF00931_consen   80 --SISDPKDIEELQDQLRELLKDKRCLLVLDDVWD-EEDLEELREPLPSFSSGSKILVTTRDRSVAGSL--GGTDKVIE-  153 (287)
T ss_dssp             --TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-S-HHHH-------HCHHSS-EEEEEESCGGGGTTH--HSCEEEEE-
T ss_pred             --ccccccccccccccchhhhccccceeeeeeecc-ccccccccccccccccccccccccccccccccc--cccccccc-
Confidence              12 23 788899999999999999999999999 889999988888888899999999999998877  23377899 


Q ss_pred             CccCCCCCCCChHHHHHHHHHHhCCC
Q 016120          349 SVLFGGPLIRLKHEAWQFFILHYGSM  374 (394)
Q Consensus       349 ~~~~l~~L~~~~~~~~~Lf~~~~~~~  374 (394)
                          |++|  +.++|++||++.++..
T Consensus       154 ----l~~L--~~~ea~~L~~~~~~~~  173 (287)
T PF00931_consen  154 ----LEPL--SEEEALELFKKRAGRK  173 (287)
T ss_dssp             ----CSS----HHHHHHHHHHHHTSH
T ss_pred             ----cccc--cccccccccccccccc
Confidence                9999  9999999999996643

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PLN03210 Resistant to P

Probab=99.89  E-value=1.5e-22  Score=223.81  Aligned_cols=166  Identities=18%  Similarity=0.213  Sum_probs=131.9

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEe---CCC-----------CC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRV---SIA-----------YD  252 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---s~~-----------~~  252 (394)
                      +++|++..++++..+|..+....++++||||||+||||||+.+|+  ++..+|+..+|+..   +..           ++
T Consensus       185 ~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~  262 (1153)
T PLN03210        185 DFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYN  262 (1153)
T ss_pred             cccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccc
Confidence            799999999999999876666799999999999999999999999  78889998888742   111           11


Q ss_pred             -HHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCCh
Q 016120          253 -FGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDP  331 (394)
Q Consensus       253 -~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~  331 (394)
                       ...++.+++..+.....    ....  . ...+++.+++||+||||||||+ ...|+.+.......++||+||||||++
T Consensus       263 ~~~~l~~~~l~~il~~~~----~~~~--~-~~~~~~~L~~krvLLVLDdv~~-~~~l~~L~~~~~~~~~GsrIIiTTrd~  334 (1153)
T PLN03210        263 MKLHLQRAFLSEILDKKD----IKIY--H-LGAMEERLKHRKVLIFIDDLDD-QDVLDALAGQTQWFGSGSRIIVITKDK  334 (1153)
T ss_pred             hhHHHHHHHHHHHhCCCC----cccC--C-HHHHHHHHhCCeEEEEEeCCCC-HHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence             22345555555543321    1110  1 2456778899999999999999 999999987766667899999999999


Q ss_pred             HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          332 DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       332 ~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      .++..+   +..++|+     ++.|  +.++||+||+++++
T Consensus       335 ~vl~~~---~~~~~~~-----v~~l--~~~ea~~LF~~~Af  365 (1153)
T PLN03210        335 HFLRAH---GIDHIYE-----VCLP--SNELALEMFCRSAF  365 (1153)
T ss_pred             HHHHhc---CCCeEEE-----ecCC--CHHHHHHHHHHHhc
Confidence            999877   5678999     9999  99999999999954

syringae 6; Provisional

>PF05729 NACHT: NACHT domain

Probab=99.24  E-value=1.2e-10  Score=100.42  Aligned_cols=146  Identities=16%  Similarity=0.185  Sum_probs=90.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccc----cCeeEEEEeCCCCCHH---HHHHHHHHHhCCCCCCccccCcCHHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFY----FDCLAWVRVSIAYDFG---KMLDDIIKSVMPPSRVSVIIGEDYQLKK  282 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~i~~~i~~~l~~~~~~~~~~~~~~~~~~  282 (394)
                      +++.|+|.+|+||||+++.++.+......    +...+|++........   .+...+.........       ....  
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-------~~~~--   71 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA-------PIEE--   71 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh-------hhHH--
Confidence            47889999999999999999875322222    4566777666544322   333344333332211       1111  


Q ss_pred             HHHHHHc-cCCeEEEEEeCCCC-C--ch-----hHHHHH-hhCCC-CCCCcEEEEecCChHHHhhchhcCCCceeeCCcc
Q 016120          283 SILRDYL-TNKKYFIVLDDVFD-N--SE-----IWSDLE-ELLPD-DENGSRVLITVTDPDLLASLEMENGEKIRRDSVL  351 (394)
Q Consensus       283 ~~l~~~l-~~kr~LlVlDdv~~-~--~~-----~~~~l~-~~l~~-~~~gs~IivTTR~~~v~~~~~~~~~~~~~~~~~~  351 (394)
                       .+...+ +.++++||||++++ .  ..     .+..+. ..++. ..++++++||+|................+.    
T Consensus        72 -~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~----  146 (166)
T PF05729_consen   72 -LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILE----  146 (166)
T ss_pred             -HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEE----
Confidence             222233 56899999999987 1  11     133332 33333 356899999999876633221113445778    


Q ss_pred             CCCCCCCChHHHHHHHHHHhC
Q 016120          352 FGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       352 ~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                       +++|  ++++..+++.+.|.
T Consensus       147 -l~~~--~~~~~~~~~~~~f~  164 (166)
T PF05729_consen  147 -LEPF--SEEDIKQYLRKYFS  164 (166)
T ss_pred             -ECCC--CHHHHHHHHHHHhh
Confidence             9999  99999999988864

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.13  E-value=1.7e-09  Score=107.04  Aligned_cols=174  Identities=16%  Similarity=0.118  Sum_probs=115.2

Q ss_pred             ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120          187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      .++||++++++|...|...  +.....+.|+|++|+|||++++.++++.......-..++++.....+...++..++.++
T Consensus        31 ~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l  110 (394)
T PRK00411         31 NLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQL  110 (394)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHh
Confidence            7999999999999998442  23445678999999999999999998432222123456777777777889999999998


Q ss_pred             CCCCCCccccCc-CHHHHHHHHHHHcc--CCeEEEEEeCCCC-C----chhHHHHHhhCCCCCCCcE--EEEecCChHHH
Q 016120          265 MPPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-N----SEIWSDLEELLPDDENGSR--VLITVTDPDLL  334 (394)
Q Consensus       265 ~~~~~~~~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~-~----~~~~~~l~~~l~~~~~gs~--IivTTR~~~v~  334 (394)
                      .....   .... +...+...+.+.+.  +++.+||||+++. .    .+.+..+...+.. ..+++  +|.++...++.
T Consensus       111 ~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~  186 (394)
T PRK00411        111 FGHPP---PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFL  186 (394)
T ss_pred             cCCCC---CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchh
Confidence            76321   0122 56677777777774  4678999999987 1    2233344333222 22333  56666655443


Q ss_pred             hhchh----cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          335 ASLEM----ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       335 ~~~~~----~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .....    .-....+.     ++|+  +.++...++..++
T Consensus       187 ~~l~~~~~s~~~~~~i~-----f~py--~~~e~~~il~~r~  220 (394)
T PRK00411        187 YILDPRVKSVFRPEEIY-----FPPY--TADEIFDILKDRV  220 (394)
T ss_pred             hhcCHHHHhcCCcceee-----cCCC--CHHHHHHHHHHHH
Confidence            33210    00124567     9999  9999999998875

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.03  E-value=9.6e-09  Score=100.61  Aligned_cols=174  Identities=17%  Similarity=0.029  Sum_probs=109.7

Q ss_pred             ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcCcccc-ccc---CeeEEEEeCCCCCHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNNDHVK-FYF---DCLAWVRVSIAYDFGKMLDDI  260 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~i~~~i  260 (394)
                      .++||+.++++|...|...  +.....+.|+|++|+|||++++.+++..... ...   -..+|++.....+...++..|
T Consensus        16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i   95 (365)
T TIGR02928        16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL   95 (365)
T ss_pred             CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence            7999999999999998642  2345578899999999999999999742110 111   135678877777788899999


Q ss_pred             HHHhC---CCCCCccccCc-CHHHHHHHHHHHcc--CCeEEEEEeCCCC-C---chhHHHHHhhC-CCCC--CCcEEEEe
Q 016120          261 IKSVM---PPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-N---SEIWSDLEELL-PDDE--NGSRVLIT  327 (394)
Q Consensus       261 ~~~l~---~~~~~~~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~-~---~~~~~~l~~~l-~~~~--~gs~IivT  327 (394)
                      +.++.   ...+    ... +..+....+.+.+.  +++++||||+++. .   .+.+..+.... ....  ....+|.+
T Consensus        96 ~~~l~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i  171 (365)
T TIGR02928        96 ANQLRGSGEEVP----TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI  171 (365)
T ss_pred             HHHHhhcCCCCC----CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence            99984   2211    112 44555566666663  5689999999988 1   11122332221 1111  22234555


Q ss_pred             cCChHHHhhchh----cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          328 VTDPDLLASLEM----ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       328 TR~~~v~~~~~~----~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      |...+....+..    .-....+.     ++|.  +.++..+++..++
T Consensus       172 ~n~~~~~~~l~~~~~s~~~~~~i~-----f~p~--~~~e~~~il~~r~  212 (365)
T TIGR02928       172 SNDLKFRENLDPRVKSSLCEEEII-----FPPY--DAEELRDILENRA  212 (365)
T ss_pred             ECCcchHhhcCHHHhccCCcceee-----eCCC--CHHHHHHHHHHHH
Confidence            544433222200    00124567     9999  9999999998875

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.94  E-value=2.9e-09  Score=96.93  Aligned_cols=173  Identities=21%  Similarity=0.167  Sum_probs=85.8

Q ss_pred             cceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH--------
Q 016120          188 INEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD--------  259 (394)
Q Consensus       188 ~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~--------  259 (394)
                      |+||+.++++|.+++..+  ....+.|+|+.|+|||+|++.+.+  ..++.-...+|+........ .....        
T Consensus         1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~   75 (234)
T PF01637_consen    1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLA   75 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccchhh-hHHHHHHHHHHHH
Confidence            789999999999998764  356788999999999999999998  34322123445544343322 11222        


Q ss_pred             ------HHHHhCCCCCCc--cccCcCHHHHHHHHHHHc--cCCeEEEEEeCCCC-C------chhHHHHH---hhCCCCC
Q 016120          260 ------IIKSVMPPSRVS--VIIGEDYQLKKSILRDYL--TNKKYFIVLDDVFD-N------SEIWSDLE---ELLPDDE  319 (394)
Q Consensus       260 ------i~~~l~~~~~~~--~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~-~------~~~~~~l~---~~l~~~~  319 (394)
                            +...+.......  .............+.+.+  .+++++||+||+.. .      ......+.   ..+....
T Consensus        76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  155 (234)
T PF01637_consen   76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ  155 (234)
T ss_dssp             CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred             HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence                  222221111000  000112222333333333  23569999999987 2      11122233   3333344


Q ss_pred             CCcEEEEecCChHHHhh-ch----hcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120          320 NGSRVLITVTDPDLLAS-LE----MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       320 ~gs~IivTTR~~~v~~~-~~----~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~  373 (394)
                      +.+ ++++..+..+... ..    ..+....+.     |+||  +.+++++++...+..
T Consensus       156 ~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~-----l~~l--~~~e~~~~~~~~~~~  206 (234)
T PF01637_consen  156 NVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIE-----LKPL--SKEEAREFLKELFKE  206 (234)
T ss_dssp             TEE-EEEEESSHHHHHHTT-TTSTTTT---EEE-----E------HHHHHHHHHHHHHC
T ss_pred             Cce-EEEECCchHHHHHhhcccCccccccceEE-----EeeC--CHHHHHHHHHHHHHH
Confidence            444 4455555544443 10    012334477     9999  999999999997643

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.92  E-value=1.2e-07  Score=88.78  Aligned_cols=151  Identities=13%  Similarity=0.118  Sum_probs=90.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc--CHHHHHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE--DYQLKKSIL  285 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~--~~~~~~~~l  285 (394)
                      +.+.+.|+|++|+|||||++.+++.... ..+ ...|+ +....+..+++..++..++.+..   ..+.  ....+...+
T Consensus        42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~~l  115 (269)
T TIGR03015        42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELEDFL  115 (269)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHHH
Confidence            3568899999999999999999984321 111 22343 33455778899999988876532   1111  122333333


Q ss_pred             HHHc-cCCeEEEEEeCCCC-CchhHHHHHhhCCC---CCCCcEEEEecCChHHHhhchh-------cCCCceeeCCccCC
Q 016120          286 RDYL-TNKKYFIVLDDVFD-NSEIWSDLEELLPD---DENGSRVLITVTDPDLLASLEM-------ENGEKIRRDSVLFG  353 (394)
Q Consensus       286 ~~~l-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~---~~~gs~IivTTR~~~v~~~~~~-------~~~~~~~~~~~~~l  353 (394)
                      .... .+++.+||+||++. +...++.+......   ......|++|... .....+..       ......++     +
T Consensus       116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~-----l  189 (269)
T TIGR03015       116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCH-----L  189 (269)
T ss_pred             HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeee-----C
Confidence            3333 67889999999998 45566666533221   1222244555543 33222200       01134567     9


Q ss_pred             CCCCCChHHHHHHHHHHhC
Q 016120          354 GPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       354 ~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ++|  +.+|...++...+.
T Consensus       190 ~~l--~~~e~~~~l~~~l~  206 (269)
T TIGR03015       190 GPL--DREETREYIEHRLE  206 (269)
T ss_pred             CCC--CHHHHHHHHHHHHH
Confidence            999  99999999987753

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=98.86  E-value=9.7e-09  Score=97.88  Aligned_cols=144  Identities=19%  Similarity=0.202  Sum_probs=92.3

Q ss_pred             ccceecccH---HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          187 DINEFERGR---EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       187 ~~~Gr~~~~---~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      +++|.+..+   .-|-.++..  .++....+||++|+||||||+.+..  ....+|..     +|-..+-.+        
T Consensus        25 e~vGQ~HLlg~~~~lrr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~~-----~sAv~~gvk--------   87 (436)
T COG2256          25 EVVGQEHLLGEGKPLRRAVEA--GHLHSMILWGPPGTGKTTLARLIAG--TTNAAFEA-----LSAVTSGVK--------   87 (436)
T ss_pred             HhcChHhhhCCCchHHHHHhc--CCCceeEEECCCCCCHHHHHHHHHH--hhCCceEE-----eccccccHH--------
Confidence            666655433   222233333  3577778999999999999999998  55555532     222221111        


Q ss_pred             hCCCCCCccccCcCHHHHHHHHHH-HccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE--ecCChHHHhhchh
Q 016120          264 VMPPSRVSVIIGEDYQLKKSILRD-YLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI--TVTDPDLLASLEM  339 (394)
Q Consensus       264 l~~~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v~~~~~~  339 (394)
                                   +.....+.-++ ...|++.+|.+|.|.. |..+-+-   .||.-.+|.-|+|  ||-|+...-.-..
T Consensus        88 -------------dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~ln~AL  151 (436)
T COG2256          88 -------------DLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFELNPAL  151 (436)
T ss_pred             -------------HHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhh---hhhhhcCCeEEEEeccCCCCCeeecHHH
Confidence                         23333333322 2358999999999998 6644444   4566688887777  8888843222111


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                      .+...++.     ++||  +.++-.+++.+.
T Consensus       152 lSR~~vf~-----lk~L--~~~di~~~l~ra  175 (436)
T COG2256         152 LSRARVFE-----LKPL--SSEDIKKLLKRA  175 (436)
T ss_pred             hhhhheee-----eecC--CHHHHHHHHHHH
Confidence            35678999     9999  999999999884

>PRK06893 DNA replication initiation factor; Validated

Probab=98.80  E-value=4.1e-08  Score=89.84  Aligned_cols=122  Identities=17%  Similarity=0.189  Sum_probs=75.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY  288 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~  288 (394)
                      .+.+.++|++|+|||+|++.+++  +.......+.|+++....   .                     ...    .+.+.
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~~~~---~---------------------~~~----~~~~~   88 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLSKSQ---Y---------------------FSP----AVLEN   88 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHHHhh---h---------------------hhH----HHHhh
Confidence            45788999999999999999998  443333445676653110   0                     000    11111


Q ss_pred             ccCCeEEEEEeCCCC--CchhHHH-HHhhCCCC-CCCcEEEE-ecCC---------hHHHhhchhcCCCceeeCCccCCC
Q 016120          289 LTNKKYFIVLDDVFD--NSEIWSD-LEELLPDD-ENGSRVLI-TVTD---------PDLLASLEMENGEKIRRDSVLFGG  354 (394)
Q Consensus       289 l~~kr~LlVlDdv~~--~~~~~~~-l~~~l~~~-~~gs~Iiv-TTR~---------~~v~~~~~~~~~~~~~~~~~~~l~  354 (394)
                      +. +.-+|||||+|.  ....|+. +...+... ..|+.+|+ |+..         +++...+   ....+++     ++
T Consensus        89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl---~~g~~~~-----l~  159 (229)
T PRK06893         89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRL---TWGEIYQ-----LN  159 (229)
T ss_pred             cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHH---hcCCeee-----CC
Confidence            21 234899999997  2345653 33333222 34555654 5544         3555555   4567889     99


Q ss_pred             CCCCChHHHHHHHHHHh
Q 016120          355 PLIRLKHEAWQFFILHY  371 (394)
Q Consensus       355 ~L~~~~~~~~~Lf~~~~  371 (394)
                      ++  +.++.++++++.+
T Consensus       160 ~p--d~e~~~~iL~~~a  174 (229)
T PRK06893        160 DL--TDEQKIIVLQRNA  174 (229)
T ss_pred             CC--CHHHHHHHHHHHH
Confidence            99  9999999999885

>PF13173 AAA_14: AAA domain

Probab=98.79  E-value=2.5e-08  Score=82.66  Aligned_cols=123  Identities=15%  Similarity=0.157  Sum_probs=78.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY  288 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~  288 (394)
                      .+++.|.|+.|+|||||++.++.+..   .-...++++..........                    ..+ ..+.+.+.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~--------------------~~~-~~~~~~~~   57 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA--------------------DPD-LLEYFLEL   57 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh--------------------hhh-hHHHHHHh
Confidence            36889999999999999999987422   2344566654332211000                    000 23333343


Q ss_pred             ccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc-h--hcCCCceeeCCccCCCCCCCChHHH
Q 016120          289 LTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASL-E--MENGEKIRRDSVLFGGPLIRLKHEA  363 (394)
Q Consensus       289 l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~-~--~~~~~~~~~~~~~~l~~L~~~~~~~  363 (394)
                      ...++.+++||++.. ...|......+.+..+..+|++|+.+......- .  ..+....++     |.||  +-.|.
T Consensus        58 ~~~~~~~i~iDEiq~-~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~-----l~Pl--sf~E~  127 (128)
T PF13173_consen   58 IKPGKKYIFIDEIQY-LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIE-----LYPL--SFREF  127 (128)
T ss_pred             hccCCcEEEEehhhh-hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEE-----ECCC--CHHHh
Confidence            444778899999999 777877777776666678999999987555321 0  023345567     9999  87663

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.70  E-value=5e-08  Score=80.78  Aligned_cols=114  Identities=18%  Similarity=0.228  Sum_probs=78.7

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccc-----cCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFY-----FDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLK  281 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~  281 (394)
                      +.+.+.|+|.+|+|||++++.+...  ....     -...+|++++...+...+...|+..++....     .. +...+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~l   75 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-----SRQTSDEL   75 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-----STS-HHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-----ccCCHHHH
Confidence            3568899999999999999999873  2221     2345699988888999999999999998765     22 67777


Q ss_pred             HHHHHHHccC-CeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCC
Q 016120          282 KSILRDYLTN-KKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTD  330 (394)
Q Consensus       282 ~~~l~~~l~~-kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~  330 (394)
                      ...+.+.+.. +..+||+|++..  +...++.+.....  ..+.+||+..+.
T Consensus        76 ~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~  125 (131)
T PF13401_consen   76 RSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP  125 (131)
T ss_dssp             HHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred             HHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence            7888888864 456999999977  1234455544433  556677776554

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.70  E-value=8.8e-08  Score=95.37  Aligned_cols=144  Identities=17%  Similarity=0.162  Sum_probs=89.3

Q ss_pred             ccceecccHHH---HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          187 DINEFERGREE---LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       187 ~~~Gr~~~~~~---i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      +++|.+..+..   +..++...  ....+.++|++|+||||||+.+++  .....|     +.++.......        
T Consensus        13 d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~--~~~~~~-----~~l~a~~~~~~--------   75 (413)
T PRK13342         13 EVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAG--ATDAPF-----EALSAVTSGVK--------   75 (413)
T ss_pred             HhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHH--HhCCCE-----EEEecccccHH--------
Confidence            78998877655   66666544  355778899999999999999988  333332     32222111111        


Q ss_pred             hCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE--ecCChH--HHhhc
Q 016120          264 VMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI--TVTDPD--LLASL  337 (394)
Q Consensus       264 l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~--v~~~~  337 (394)
                                   +...+.+..... ..+++.+|++|+++. +....+.+...+.   .|+.+++  ||.++.  +...+
T Consensus        76 -------------~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL  139 (413)
T PRK13342         76 -------------DLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPAL  139 (413)
T ss_pred             -------------HHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHH
Confidence                         111222222222 245788999999998 5556666666553   3455554  455543  22222


Q ss_pred             hhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          338 EMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       338 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                        .+...+++     +.++  +.++.+.++.+.+.
T Consensus       140 --~SR~~~~~-----~~~l--s~e~i~~lL~~~l~  165 (413)
T PRK13342        140 --LSRAQVFE-----LKPL--SEEDIEQLLKRALE  165 (413)
T ss_pred             --hccceeeE-----eCCC--CHHHHHHHHHHHHH
Confidence              23456788     9999  99999999988743

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.65  E-value=6.6e-08  Score=89.13  Aligned_cols=89  Identities=12%  Similarity=0.025  Sum_probs=62.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCC--CCHHHHHHHH-----HHHhCCCCCCccccCc-CHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA--YDFGKMLDDI-----IKSVMPPSRVSVIIGE-DYQLK  281 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i-----~~~l~~~~~~~~~~~~-~~~~~  281 (394)
                      ..++|+|++|+|||||++.+|++.... +|+.++|++++.+  +++.+++..+     +...+.+..    ... -....
T Consensus        17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~----~~~~~~~~~   91 (249)
T cd01128          17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPE----RHVQVAEMV   91 (249)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHH----HHHHHHHHH
Confidence            467899999999999999999965444 8999999998877  7899999998     443333211    000 11222


Q ss_pred             HHHHHHH-ccCCeEEEEEeCCCC
Q 016120          282 KSILRDY-LTNKKYFIVLDDVFD  303 (394)
Q Consensus       282 ~~~l~~~-l~~kr~LlVlDdv~~  303 (394)
                      ......+ -.|++.++++|++..
T Consensus        92 ~~~a~~~~~~G~~vll~iDei~r  114 (249)
T cd01128          92 LEKAKRLVEHGKDVVILLDSITR  114 (249)
T ss_pred             HHHHHHHHHCCCCEEEEEECHHH
Confidence            3333332 257999999999874

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.65  E-value=3.7e-07  Score=99.87  Aligned_cols=169  Identities=15%  Similarity=0.160  Sum_probs=101.9

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC-CCCHHHHHHHHHHHhC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI-AYDFGKMLDDIIKSVM  265 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~  265 (394)
                      .++-|+.    |.+.|.. ....+++.|+|++|.||||++......      ++.++|+++.. .-++......++..+.
T Consensus        15 ~~~~R~r----l~~~l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~   83 (903)
T PRK04841         15 NTVVRER----LLAKLSG-ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ   83 (903)
T ss_pred             ccCcchH----HHHHHhc-ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence            5555654    4444443 235789999999999999999988752      23688999964 4466677777777774


Q ss_pred             CCCCCc--------cccCc-CHHHHHHHHHHHcc--CCeEEEEEeCCCC-Cchh-HHHHHhhCCCCCCCcEEEEecCChH
Q 016120          266 PPSRVS--------VIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-NSEI-WSDLEELLPDDENGSRVLITVTDPD  332 (394)
Q Consensus       266 ~~~~~~--------~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~-~~~~-~~~l~~~l~~~~~gs~IivTTR~~~  332 (394)
                      ...+..        ...+. +...+...+...+.  +.+++|||||+.. +... .+.+...++....+.++|||||...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~  163 (903)
T PRK04841         84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP  163 (903)
T ss_pred             HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence            222110        00111 23333433433332  6789999999987 3223 3344444444456678989999842


Q ss_pred             HHhhchhcCCCceeeCCccCCC----CCCCChHHHHHHHHHHhCC
Q 016120          333 LLASLEMENGEKIRRDSVLFGG----PLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       333 v~~~~~~~~~~~~~~~~~~~l~----~L~~~~~~~~~Lf~~~~~~  373 (394)
                      -..............     ++    +|  +.+|+..||....|.
T Consensus       164 ~~~~~~l~~~~~~~~-----l~~~~l~f--~~~e~~~ll~~~~~~  201 (903)
T PRK04841        164 PLGIANLRVRDQLLE-----IGSQQLAF--DHQEAQQFFDQRLSS  201 (903)
T ss_pred             CCchHhHHhcCccee-----cCHHhCCC--CHHHHHHHHHhccCC
Confidence            111000001122344     66    99  999999999876653

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.63  E-value=3.9e-07  Score=76.00  Aligned_cols=124  Identities=15%  Similarity=0.020  Sum_probs=69.7

Q ss_pred             ceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 016120          189 NEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPS  268 (394)
Q Consensus       189 ~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~  268 (394)
                      .|++..+..+...+...  ....+.|+|.+|+|||++++.+++.  ....-..++++..+...........+.       
T Consensus         1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~-------   69 (151)
T cd00009           1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFG-------   69 (151)
T ss_pred             CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhh-------
Confidence            36777888888887653  3457889999999999999999984  322223455665444322111110000       


Q ss_pred             CCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHH---HhhCCCC---CCCcEEEEecCChH
Q 016120          269 RVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDL---EELLPDD---ENGSRVLITVTDPD  332 (394)
Q Consensus       269 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l---~~~l~~~---~~gs~IivTTR~~~  332 (394)
                               ..............++.+||+||++. .......+   ...+...   ..+..||+||....
T Consensus        70 ---------~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          70 ---------HFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             ---------hhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence                     00001111222345678999999996 11222223   2232221   35778888888653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.62  E-value=7.1e-08  Score=84.72  Aligned_cols=46  Identities=22%  Similarity=0.143  Sum_probs=31.7

Q ss_pred             ccceecccHHHHHHHHhc-CCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          187 DINEFERGREELFDLLIE-GPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .|+||+++++++...|.. .+...+.+.|+|.+|+|||+|.+.++..
T Consensus         1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~   47 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR   47 (185)
T ss_dssp             --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            489999999999999942 2345689999999999999999999883

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.58  E-value=3.2e-07  Score=86.37  Aligned_cols=150  Identities=18%  Similarity=0.205  Sum_probs=94.8

Q ss_pred             ccceecccHHH--HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120          187 DINEFERGREE--LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       187 ~~~Gr~~~~~~--i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      +.||.+..+.+  ++..+.+. ..++.+.+||++|+||||||+.+.+......    ..+|..|-.-....-.++|+++-
T Consensus       139 dyvGQ~hlv~q~gllrs~ieq-~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~a  213 (554)
T KOG2028|consen  139 DYVGQSHLVGQDGLLRSLIEQ-NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQA  213 (554)
T ss_pred             HhcchhhhcCcchHHHHHHHc-CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHH
Confidence            55665543322  23333333 2577888999999999999999998433222    45676665433333333333321


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE--ecCChHHHhhchhcC
Q 016120          265 MPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI--TVTDPDLLASLEMEN  341 (394)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~v~~~~~~~~  341 (394)
                      .                   -...+..+|..|.+|.|.. |..+-+   ..||.-.+|+-++|  ||.|+..-.....-+
T Consensus       214 q-------------------~~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlS  271 (554)
T KOG2028|consen  214 Q-------------------NEKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLS  271 (554)
T ss_pred             H-------------------HHHhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHh
Confidence            1                   0112456889999999987 453333   45677788887777  888885322221135


Q ss_pred             CCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          342 GEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       342 ~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                      ...++-     |++|  +.++-..++.+.
T Consensus       272 RC~Vfv-----LekL--~~n~v~~iL~ra  293 (554)
T KOG2028|consen  272 RCRVFV-----LEKL--PVNAVVTILMRA  293 (554)
T ss_pred             ccceeE-----eccC--CHHHHHHHHHHH
Confidence            678888     9999  999999999884

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.55  E-value=1.6e-06  Score=83.10  Aligned_cols=154  Identities=14%  Similarity=0.221  Sum_probs=101.3

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC----cccccccCeeEEEEe-CCCCCHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN----DHVKFYFDCLAWVRV-SIAYDFGKMLDDII  261 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~----~~~~~~F~~~~wv~v-s~~~~~~~i~~~i~  261 (394)
                      +++|.+..++.+.+++..+. -.....++|+.|+||||+|+.++..    .....|.|...|... +....... .+++.
T Consensus         5 ~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~   82 (313)
T PRK05564          5 TIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII   82 (313)
T ss_pred             hccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence            67898888899998886542 3457789999999999999888762    123456666555442 22222222 11222


Q ss_pred             HHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhhchh
Q 016120          262 KSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLASLEM  339 (394)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~  339 (394)
                      +.+...                    -..+++-++|+|++.. +...++.+...+.....++.+|++|.+++ +....  
T Consensus        83 ~~~~~~--------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI--  140 (313)
T PRK05564         83 EEVNKK--------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI--  140 (313)
T ss_pred             HHHhcC--------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH--
Confidence            222111                    0124556677777766 57889999999988888999998887664 22222  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .+....++     +.++  +.++....+.+.+
T Consensus       141 ~SRc~~~~-----~~~~--~~~~~~~~l~~~~  165 (313)
T PRK05564        141 KSRCQIYK-----LNRL--SKEEIEKFISYKY  165 (313)
T ss_pred             Hhhceeee-----CCCc--CHHHHHHHHHHHh
Confidence            23456888     9999  9999887776654

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.52  E-value=1e-06  Score=92.85  Aligned_cols=144  Identities=17%  Similarity=0.211  Sum_probs=87.0

Q ss_pred             ccceecccHH---HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          187 DINEFERGRE---ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       187 ~~~Gr~~~~~---~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      +++|.+..+.   .+.+.+..+  ....+.++|++|+||||||+.+++  ....+|..   ++.+. ....         
T Consensus        29 d~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~~---lna~~-~~i~---------   91 (725)
T PRK13341         29 EFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN--HTRAHFSS---LNAVL-AGVK---------   91 (725)
T ss_pred             HhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH--HhcCccee---ehhhh-hhhH---------
Confidence            8899888774   344444433  455678999999999999999998  44444411   11110 0000         


Q ss_pred             hCCCCCCccccCcCHHHHHHHHHHHc--cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE--ecCChH--HHhh
Q 016120          264 VMPPSRVSVIIGEDYQLKKSILRDYL--TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI--TVTDPD--LLAS  336 (394)
Q Consensus       264 l~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv--TTR~~~--v~~~  336 (394)
                                   +.........+.+  .+++.+|+|||++. +...++.+...+   ..|+.+++  ||.++.  +...
T Consensus        92 -------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~a  155 (725)
T PRK13341         92 -------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKA  155 (725)
T ss_pred             -------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhH
Confidence                         1111222222222  24677999999987 566666666544   34555555  455542  2222


Q ss_pred             chhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          337 LEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       337 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      .  .+...++.     ++||  +.++...++.+.+.
T Consensus       156 L--~SR~~v~~-----l~pL--s~edi~~IL~~~l~  182 (725)
T PRK13341        156 L--VSRSRLFR-----LKSL--SDEDLHQLLKRALQ  182 (725)
T ss_pred             h--hcccccee-----cCCC--CHHHHHHHHHHHHH
Confidence            2  12355788     9999  99999999988653

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.51  E-value=1.4e-06  Score=90.34  Aligned_cols=152  Identities=11%  Similarity=0.036  Sum_probs=98.0

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc-------------------cCeeEEEEe
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY-------------------FDCLAWVRV  247 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv~v  247 (394)
                      +++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.......                   |...++++.
T Consensus        17 EVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDA   95 (830)
T PRK07003         17 SLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDA   95 (830)
T ss_pred             HHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecc
Confidence            89999999999999987653 2445569999999999999988763211111                   111222221


Q ss_pred             CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCc
Q 016120          248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGS  322 (394)
Q Consensus       248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs  322 (394)
                      +.+.                         ..+++.+.+...    ..++.-++|||++.. +...|+.|...+-.-..+.
T Consensus        96 as~r-------------------------gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v  150 (830)
T PRK07003         96 ASNR-------------------------GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHV  150 (830)
T ss_pred             cccc-------------------------cHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCe
Confidence            1111                         222333222221    134556889999998 5667888887776555677


Q ss_pred             EEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120          323 RVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       323 ~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~  373 (394)
                      ++|+||.+. .+...+  .+....++     +.++  +.++..+.+.+.++.
T Consensus       151 ~FILaTtd~~KIp~TI--rSRCq~f~-----Fk~L--s~eeIv~~L~~Il~~  193 (830)
T PRK07003        151 KFILATTDPQKIPVTV--LSRCLQFN-----LKQM--PAGHIVSHLERILGE  193 (830)
T ss_pred             EEEEEECChhhccchh--hhheEEEe-----cCCc--CHHHHHHHHHHHHHH
Confidence            877777664 444343  24456788     9999  999999888887653

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.51  E-value=1.5e-06  Score=84.03  Aligned_cols=168  Identities=15%  Similarity=0.103  Sum_probs=91.6

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc-cC-eeEEEEeCCCCCH-HHHHH---HH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY-FD-CLAWVRVSIAYDF-GKMLD---DI  260 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~vs~~~~~-~~i~~---~i  260 (394)
                      +++|++..++.+..++..+  ..+.+.++|++|+||||+|+.+.+  ....+ +. ..+.++++.-... ...+.   ..
T Consensus        16 ~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~--~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   91 (337)
T PRK12402         16 DILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALAR--ELYGDPWENNFTEFNVADFFDQGKKYLVEDPRF   91 (337)
T ss_pred             HhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcccccceEEechhhhhhcchhhhhcCcch
Confidence            7899999999998888654  344577999999999999999887  33221 22 1234443321100 00000   00


Q ss_pred             HHHhCCCCCCccccCc-CHHHHHHHHHH---Hc--cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-H
Q 016120          261 IKSVMPPSRVSVIIGE-DYQLKKSILRD---YL--TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-D  332 (394)
Q Consensus       261 ~~~l~~~~~~~~~~~~-~~~~~~~~l~~---~l--~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~  332 (394)
                      ...++....    ... ..+.....+..   ..  .+.+-+||+||+.. .......+...+....+.+++|+||.++ .
T Consensus        92 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~  167 (337)
T PRK12402         92 AHFLGTDKR----IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK  167 (337)
T ss_pred             hhhhhhhhh----hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence            000000000    000 11222222222   11  23455899999977 3444555655554444456788777543 3


Q ss_pred             HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          333 LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       333 v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      +...+  .+....+.     +.|+  +.++....+.+.+
T Consensus       168 ~~~~L--~sr~~~v~-----~~~~--~~~~~~~~l~~~~  197 (337)
T PRK12402        168 LIPPI--RSRCLPLF-----FRAP--TDDELVDVLESIA  197 (337)
T ss_pred             Cchhh--cCCceEEE-----ecCC--CHHHHHHHHHHHH
Confidence            32323  23345667     8999  9999888888764

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.50  E-value=1.1e-06  Score=91.45  Aligned_cols=175  Identities=16%  Similarity=0.102  Sum_probs=108.7

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccccc---CeeEEEEeCC---CCCHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYF---DCLAWVRVSI---AYDFGKMLDDI  260 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~---~~~~~~i~~~i  260 (394)
                      +++|++..+..+.+.+...  ....+.|+|++|+||||||+.+++.......+   ...-|+.+..   ..+...+...+
T Consensus       155 ~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l  232 (615)
T TIGR02903       155 EIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL  232 (615)
T ss_pred             hceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence            8999999999988887543  35578899999999999999998753322222   1234554432   12222221111


Q ss_pred             ---------------HHHhCCCCCC-------------ccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHH
Q 016120          261 ---------------IKSVMPPSRV-------------SVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDL  311 (394)
Q Consensus       261 ---------------~~~l~~~~~~-------------~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l  311 (394)
                                     +...+.....             ..+++.=....+..+.+.+++++++++-|+.|. +...|+.+
T Consensus       233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i  312 (615)
T TIGR02903       233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI  312 (615)
T ss_pred             cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence                           1111111000             012222123357788888888999999877776 45678888


Q ss_pred             HhhCCCCCCCcEEEE--ecCChH-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          312 EELLPDDENGSRVLI--TVTDPD-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       312 ~~~l~~~~~gs~Iiv--TTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ...+....+...|++  ||+++. +...+  .+....+.     +.|+  +.+|.+.++.+.+.
T Consensus       313 k~~~~~~~~~~~VLI~aTt~~~~~l~~aL--rSR~~~i~-----~~pl--s~edi~~Il~~~a~  367 (615)
T TIGR02903       313 KKLFEEGAPADFVLIGATTRDPEEINPAL--RSRCAEVF-----FEPL--TPEDIALIVLNAAE  367 (615)
T ss_pred             hhhcccCccceEEEEEeccccccccCHHH--HhceeEEE-----eCCC--CHHHHHHHHHHHHH
Confidence            877776666655666  666543 22222  12334667     9999  99999999998754

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.47  E-value=2.2e-07  Score=89.72  Aligned_cols=100  Identities=16%  Similarity=0.124  Sum_probs=64.4

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCC--CHHHHHHHHHHHhCCCCCCcccc
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAY--DFGKMLDDIIKSVMPPSRVSVII  274 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~~  274 (394)
                      ++++.+..-..+ ....|+|++|+||||||+.+|++.... ||++++||.+++..  .+.+++.++...+-..     ..
T Consensus       158 rvID~l~PIGkG-QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s-----t~  230 (416)
T PRK09376        158 RIIDLIAPIGKG-QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS-----TF  230 (416)
T ss_pred             eeeeeecccccC-ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE-----CC
Confidence            445555443323 355789999999999999999964444 89999999999987  7777777776211111     11


Q ss_pred             Cc-CH------HHHHHHHHHH-ccCCeEEEEEeCCCC
Q 016120          275 GE-DY------QLKKSILRDY-LTNKKYFIVLDDVFD  303 (394)
Q Consensus       275 ~~-~~------~~~~~~l~~~-l~~kr~LlVlDdv~~  303 (394)
                      +. ..      ....+.-..+ -.|++.+|++|++..
T Consensus       231 d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR  267 (416)
T PRK09376        231 DEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR  267 (416)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence            11 11      1111112222 267999999999964

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.47  E-value=4.3e-06  Score=81.83  Aligned_cols=168  Identities=10%  Similarity=-0.007  Sum_probs=93.8

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+.........       ..+...-....++......
T Consensus        17 ~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~~   88 (363)
T PRK14961         17 DIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLCL   88 (363)
T ss_pred             hccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCCC
Confidence            89999999999988887642 345678999999999999999976321111000       0000000000111000000


Q ss_pred             CCCCccccCc-CHHHH---HHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchh
Q 016120          267 PSRVSVIIGE-DYQLK---KSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEM  339 (394)
Q Consensus       267 ~~~~~~~~~~-~~~~~---~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~  339 (394)
                      .-......+. ..++.   .+.+... ..+++-++|+|++.. +...++.+...+.......++|++|.+. .+...+  
T Consensus        89 d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI--  166 (363)
T PRK14961         89 DLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI--  166 (363)
T ss_pred             ceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH--
Confidence            0000000000 12222   2211111 124566999999988 5556777877776656667777766553 444333  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .+....++     +.|+  +.++....+.+.+
T Consensus       167 ~SRc~~~~-----~~~l--~~~el~~~L~~~~  191 (363)
T PRK14961        167 LSRCLQFK-----LKII--SEEKIFNFLKYIL  191 (363)
T ss_pred             HhhceEEe-----CCCC--CHHHHHHHHHHHH
Confidence            23456788     9999  9999888877753

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.46  E-value=1.5e-06  Score=85.06  Aligned_cols=158  Identities=18%  Similarity=0.198  Sum_probs=90.0

Q ss_pred             ccceecccHHHHHHHHhcC--C---------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIEG--P---------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~--~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|++..+++|.+.+...  .         ...+-+.++|++|+|||++|+.+++  +...+|     +.+..    ..
T Consensus       123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~~----~~  191 (364)
T TIGR01242       123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVVG----SE  191 (364)
T ss_pred             HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecch----HH
Confidence            8999999999998877432  1         1245588999999999999999998  444443     22211    11


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C-----------ch---hHHHHHhhCCC--C
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N-----------SE---IWSDLEELLPD--D  318 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~-----------~~---~~~~l~~~l~~--~  318 (394)
                      +    .....         ......+...+...-...+.+|+||+++. .           ..   .+..+...+..  .
T Consensus       192 l----~~~~~---------g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~  258 (364)
T TIGR01242       192 L----VRKYI---------GEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP  258 (364)
T ss_pred             H----HHHhh---------hHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence            1    11100         00111112222222234678999999875 0           11   12233322221  1


Q ss_pred             CCCcEEEEecCChHHHh-hchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120          319 ENGSRVLITVTDPDLLA-SLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP  375 (394)
Q Consensus       319 ~~gs~IivTTR~~~v~~-~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~  375 (394)
                      ..+.+||.||...+... .+.. ......+.     +++.  +.++..++|+.+.....
T Consensus       259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~-----v~~P--~~~~r~~Il~~~~~~~~  310 (364)
T TIGR01242       259 RGNVKVIAATNRPDILDPALLRPGRFDRIIE-----VPLP--DFEGRLEILKIHTRKMK  310 (364)
T ss_pred             CCCEEEEEecCChhhCChhhcCcccCceEEE-----eCCc--CHHHHHHHHHHHHhcCC
Confidence            34567888887653221 1100 01245677     9999  99999999988754433

Many proteins may score above the trusted cutoff because an internal

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.44  E-value=4.1e-06  Score=84.77  Aligned_cols=172  Identities=10%  Similarity=-0.015  Sum_probs=98.8

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCe-eEEEEeCCCCCHHHHHHHHHHHhC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDC-LAWVRVSIAYDFGKMLDDIIKSVM  265 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~  265 (394)
                      +++|.+..+..+...+..+. -...+.++|+.|+||||+|+.+++.......... ..+...    ..-.....+.....
T Consensus        22 dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C----~~C~~C~~i~~~~h   96 (507)
T PRK06645         22 ELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC----EQCTNCISFNNHNH   96 (507)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC----CCChHHHHHhcCCC
Confidence            89999999988888776542 3456789999999999999999763211110000 000000    00000000100000


Q ss_pred             CCCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhch
Q 016120          266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASLE  338 (394)
Q Consensus       266 ~~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~~  338 (394)
                      .........+. ..+++...+...    +.+++-++|+|+++. +...|+.|...+......+.+|+ ||+.+.+...+ 
T Consensus        97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI-  175 (507)
T PRK06645         97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI-  175 (507)
T ss_pred             CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH-
Confidence            00000000011 233333322222    245677899999998 66778888888776556666554 55656666555 


Q ss_pred             hcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          339 MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       339 ~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                       .+....++     +.++  +.++....+.+.+.
T Consensus       176 -~SRc~~~e-----f~~l--s~~el~~~L~~i~~  201 (507)
T PRK06645        176 -ISRCQRYD-----LRRL--SFEEIFKLLEYITK  201 (507)
T ss_pred             -HhcceEEE-----ccCC--CHHHHHHHHHHHHH
Confidence             23456788     9999  99999999988764

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=98.41  E-value=9.2e-07  Score=84.44  Aligned_cols=165  Identities=14%  Similarity=-0.000  Sum_probs=90.4

Q ss_pred             ccceecccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      +|+|++..++++..++...   ......+.++|++|+|||+||+.+.+  +....+   ..+..+..... ..+...+..
T Consensus         5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~--~~~~~~---~~~~~~~~~~~-~~l~~~l~~   78 (305)
T TIGR00635         5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN--EMGVNL---KITSGPALEKP-GDLAAILTN   78 (305)
T ss_pred             HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCCE---EEeccchhcCc-hhHHHHHHh
Confidence            7899999999998888642   22355678999999999999999998  333222   11221111111 122222333


Q ss_pred             hCCCCCC-ccccCcCHHHHHHHHHHHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcCC
Q 016120          264 VMPPSRV-SVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENG  342 (394)
Q Consensus       264 l~~~~~~-~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~  342 (394)
                      ++...-. ..+++.-.....+.+...+.+.+..+|+++..+ ...|.   ..+   .+.+-|..||+...+...+. ...
T Consensus        79 ~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~-~~~~~---~~~---~~~~li~~t~~~~~l~~~l~-sR~  150 (305)
T TIGR00635        79 LEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPS-ARSVR---LDL---PPFTLVGATTRAGMLTSPLR-DRF  150 (305)
T ss_pred             cccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcc-cccee---ecC---CCeEEEEecCCccccCHHHH-hhc
Confidence            3221100 011111011223445555555555666666555 32221   112   22455666777654444321 012


Q ss_pred             CceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          343 EKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       343 ~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ...++     ++++  +.++..+++.+.++
T Consensus       151 ~~~~~-----l~~l--~~~e~~~il~~~~~  173 (305)
T TIGR00635       151 GIILR-----LEFY--TVEELAEIVSRSAG  173 (305)
T ss_pred             ceEEE-----eCCC--CHHHHHHHHHHHHH
Confidence            34567     9999  99999999998765

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.41  E-value=2.4e-06  Score=77.79  Aligned_cols=141  Identities=17%  Similarity=0.124  Sum_probs=81.0

Q ss_pred             ccce--ecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120          187 DINE--FERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       187 ~~~G--r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      +|++  .+..++.+.+++..  .....+.|+|++|+|||+||+.+++.  ........++++++.-.+      .     
T Consensus        16 ~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~------~-----   80 (226)
T TIGR03420        16 NFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQ------A-----   80 (226)
T ss_pred             CcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHH------h-----
Confidence            4542  33456666666543  23567889999999999999999873  332333445554322110      0     


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cch-hH-HHHHhhCCC-CCCCcEEEEecCChH--------
Q 016120          265 MPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSE-IW-SDLEELLPD-DENGSRVLITVTDPD--------  332 (394)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~-~~-~~l~~~l~~-~~~gs~IivTTR~~~--------  332 (394)
                                   .    ..+...+.+ .-+|||||++. +.. .| +.+...+.. ...+..+|+||+...        
T Consensus        81 -------------~----~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~  142 (226)
T TIGR03420        81 -------------D----PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP  142 (226)
T ss_pred             -------------H----HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence                         0    011111222 23899999987 221 23 344443322 123457888887532        


Q ss_pred             -HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          333 -LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       333 -v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                       +...+   .....++     ++|+  +.++...++.+.
T Consensus       143 ~L~~r~---~~~~~i~-----l~~l--~~~e~~~~l~~~  171 (226)
T TIGR03420       143 DLRTRL---AWGLVFQ-----LPPL--SDEEKIAALQSR  171 (226)
T ss_pred             HHHHHH---hcCeeEe-----cCCC--CHHHHHHHHHHH
Confidence             12222   2245788     9999  999999998875

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK08727 hypothetical protein; Validated

Probab=98.39  E-value=4.3e-06  Score=76.66  Aligned_cols=122  Identities=14%  Similarity=0.017  Sum_probs=72.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY  288 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~  288 (394)
                      ...+.|+|..|+|||+|++.+++  ...+....+.++++.+.      ..                  ...   ..+. .
T Consensus        41 ~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~~~------~~------------------~~~---~~~~-~   90 (233)
T PRK08727         41 SDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQAA------AG------------------RLR---DALE-A   90 (233)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHHHh------hh------------------hHH---HHHH-H
Confidence            34589999999999999999988  34433334566653221      00                  001   1111 1


Q ss_pred             ccCCeEEEEEeCCCC--CchhHHH-HHhhCCC-CCCCcEEEEecCCh---------HHHhhchhcCCCceeeCCccCCCC
Q 016120          289 LTNKKYFIVLDDVFD--NSEIWSD-LEELLPD-DENGSRVLITVTDP---------DLLASLEMENGEKIRRDSVLFGGP  355 (394)
Q Consensus       289 l~~kr~LlVlDdv~~--~~~~~~~-l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~~~~~~~~~l~~  355 (394)
                      + .+.-+|||||+..  ....|.. +...+.. ..+|..||+|++..         ++...+   ....+++     +++
T Consensus        91 l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl---~~~~~~~-----l~~  161 (233)
T PRK08727         91 L-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL---AQCIRIG-----LPV  161 (233)
T ss_pred             H-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH---hcCceEE-----ecC
Confidence            1 1235899999986  1233432 2222211 13466799999853         222222   2345788     999


Q ss_pred             CCCChHHHHHHHHHHh
Q 016120          356 LIRLKHEAWQFFILHY  371 (394)
Q Consensus       356 L~~~~~~~~~Lf~~~~  371 (394)
                      +  +.++-..++.+++
T Consensus       162 ~--~~e~~~~iL~~~a  175 (233)
T PRK08727        162 L--DDVARAAVLRERA  175 (233)
T ss_pred             C--CHHHHHHHHHHHH
Confidence            9  9999999999864

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.38  E-value=4.4e-06  Score=85.14  Aligned_cols=153  Identities=8%  Similarity=-0.004  Sum_probs=95.9

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc----c---------------cccCeeEEEEe
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV----K---------------FYFDCLAWVRV  247 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~----~---------------~~F~~~~wv~v  247 (394)
                      +++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+++...-    .               ..|...+++..
T Consensus        17 diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida   95 (546)
T PRK14957         17 EVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA   95 (546)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence            89999999999998886642 3455778999999999999999762110    0               01112222221


Q ss_pred             CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEE
Q 016120          248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVL  325 (394)
Q Consensus       248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Ii  325 (394)
                      .....+.                      +...+.+.+... ..+++-++|+|++.. +...++.|...+-.....+++|
T Consensus        96 as~~gvd----------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI  153 (546)
T PRK14957         96 ASRTGVE----------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI  153 (546)
T ss_pred             ccccCHH----------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence            1111111                      222333333222 235667999999987 6677888888887665566666


Q ss_pred             E-ecCChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          326 I-TVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       326 v-TTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      + ||....+...+  .+...+++     +.++  +.++....+.+.+
T Consensus       154 L~Ttd~~kil~tI--~SRc~~~~-----f~~L--s~~eI~~~L~~il  191 (546)
T PRK14957        154 LATTDYHKIPVTI--LSRCIQLH-----LKHI--SQADIKDQLKIIL  191 (546)
T ss_pred             EEECChhhhhhhH--HHheeeEE-----eCCC--CHHHHHHHHHHHH
Confidence            5 44444444333  24467888     9999  9998877777654

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.36  E-value=4.2e-06  Score=85.76  Aligned_cols=171  Identities=8%  Similarity=-0.040  Sum_probs=97.3

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc---ccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF---YFDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      +++|.+..+..|.+.+..+. -...+.++|..|+||||+|+.+.+.....+   ....     .+..+..-.....|...
T Consensus        17 dVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~-----~~~PCG~C~sC~~I~aG   90 (700)
T PRK12323         17 TLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI-----TAQPCGQCRACTEIDAG   90 (700)
T ss_pred             HHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC-----CCCCCcccHHHHHHHcC
Confidence            89999999999999887653 334667899999999999998876311100   0000     00000000000111000


Q ss_pred             hCCCCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhh
Q 016120          264 VMPPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLAS  336 (394)
Q Consensus       264 l~~~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~  336 (394)
                      -..........+. ..+++.+.+...    ..++.-++|||++.. +...++.|...+-.-..++++|+ ||....+...
T Consensus        91 ~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpT  170 (700)
T PRK12323         91 RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVT  170 (700)
T ss_pred             CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhH
Confidence            0000000000011 233333333322    145667999999998 67788888887765555566555 5555566555


Q ss_pred             chhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          337 LEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       337 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      +  .+....++     +.++  +.++..+.+.+.++
T Consensus       171 I--rSRCq~f~-----f~~l--s~eei~~~L~~Il~  197 (700)
T PRK12323        171 V--LSRCLQFN-----LKQM--PPGHIVSHLDAILG  197 (700)
T ss_pred             H--HHHHHhcc-----cCCC--ChHHHHHHHHHHHH
Confidence            4  24456788     9999  99998888887654

>PTZ00202 tuzin; Provisional

Probab=98.35  E-value=3.8e-05  Score=75.11  Aligned_cols=161  Identities=11%  Similarity=0.011  Sum_probs=102.7

Q ss_pred             ccceecccHHHHHHHHhcCC-CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhC
Q 016120          187 DINEFERGREELFDLLIEGP-SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVM  265 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~  265 (394)
                      .|+||+.+..++...|...+ ...+++.|+|++|+|||||++.+...  ..  + . .++.-+.  +..+++..++..++
T Consensus       263 ~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~-~-qL~vNpr--g~eElLr~LL~ALG  334 (550)
T PTZ00202        263 QFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--M-P-AVFVDVR--GTEDTLRSVVKALG  334 (550)
T ss_pred             CCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--c-e-EEEECCC--CHHHHHHHHHHHcC
Confidence            89999999999999986543 23568999999999999999999873  22  1 1 3332222  67999999999999


Q ss_pred             CCCCCccccCcCHHHHHHHHHHHc-----c-CCeEEEEEeCCCCCchhHHHHH---hhCCCCCCCcEEEEecCChHHHhh
Q 016120          266 PPSRVSVIIGEDYQLKKSILRDYL-----T-NKKYFIVLDDVFDNSEIWSDLE---ELLPDDENGSRVLITVTDPDLLAS  336 (394)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlDdv~~~~~~~~~l~---~~l~~~~~gs~IivTTR~~~v~~~  336 (394)
                      .+..    .  ...++...+.+.+     . |++.+||+-= .+ .+.+..+.   ..|.+...-|+|++-.-.+.+...
T Consensus       335 V~p~----~--~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-re-g~~l~rvyne~v~la~drr~ch~v~evpleslt~~  406 (550)
T PTZ00202        335 VPNV----E--ACGDLLDFISEACRRAKKMNGETPLLVLKL-RE-GSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIA  406 (550)
T ss_pred             CCCc----c--cHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cC-CCcHHHHHHHHHHHHccchhheeeeeehHhhcchh
Confidence            7432    1  2333444444433     2 6667776653 22 22222221   345566667889987665543322


Q ss_pred             chhcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          337 LEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       337 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                      .-..+.-..|.     ++++  +.++|...-.+.
T Consensus       407 ~~~lprldf~~-----vp~f--sr~qaf~y~~h~  433 (550)
T PTZ00202        407 NTLLPRLDFYL-----VPNF--SRSQAFAYTQHA  433 (550)
T ss_pred             cccCccceeEe-----cCCC--CHHHHHHHHhhc
Confidence            21123445666     8999  888877655543

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.35  E-value=7e-06  Score=83.34  Aligned_cols=170  Identities=12%  Similarity=-0.039  Sum_probs=98.1

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|.+..++.|..++..+. -...+.++|++|+||||+|+.+++.....+.+...+|.|.+... +......-+..+..
T Consensus        15 dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~~   92 (504)
T PRK14963         15 EVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVLEIDA   92 (504)
T ss_pred             HhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceEEecc
Confidence            88999998888888887653 33456899999999999999998743222223223343321100 00000000000000


Q ss_pred             CCCCccccCc-CHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecC-ChHHHhhchhcCC
Q 016120          267 PSRVSVIIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVT-DPDLLASLEMENG  342 (394)
Q Consensus       267 ~~~~~~~~~~-~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR-~~~v~~~~~~~~~  342 (394)
                      ..    .... +..++...+... ..+++-++|+|+++. +...++.+...+.....++.+|++|. ...+...+  .+.
T Consensus        93 ~~----~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I--~SR  166 (504)
T PRK14963         93 AS----NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI--LSR  166 (504)
T ss_pred             cc----cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH--hcc
Confidence            00    0000 222222222221 235667899999987 56678888887766555556555554 34443333  234


Q ss_pred             CceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          343 EKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       343 ~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      ...++     +.++  +.++....+.+.+
T Consensus       167 c~~~~-----f~~l--s~~el~~~L~~i~  188 (504)
T PRK14963        167 TQHFR-----FRRL--TEEEIAGKLRRLL  188 (504)
T ss_pred             eEEEE-----ecCC--CHHHHHHHHHHHH
Confidence            56788     9999  9999999998874

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=98.35  E-value=2.9e-06  Score=81.88  Aligned_cols=166  Identities=13%  Similarity=0.006  Sum_probs=87.6

Q ss_pred             ccceecccHHHHHHHHhc---CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIE---GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      +|+|++..++.+...+..   .+.....+.++|++|+|||+||+.+++  +....+   .++..+ .......+..++..
T Consensus        26 ~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~--~l~~~~---~~~~~~-~~~~~~~l~~~l~~   99 (328)
T PRK00080         26 EFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN--EMGVNI---RITSGP-ALEKPGDLAAILTN   99 (328)
T ss_pred             HhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH--HhCCCe---EEEecc-cccChHHHHHHHHh
Confidence            899999999998887754   233456778999999999999999998  333222   112111 11112222333333


Q ss_pred             hCCCCCC-ccccCcCHHHHHHHHHHHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcCC
Q 016120          264 VMPPSRV-SVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENG  342 (394)
Q Consensus       264 l~~~~~~-~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~  342 (394)
                      +....-. ..+++.-.....+.+...+.+.+..+|+|+..+ ...   +...+   .+.+-|..||+...+...+. ...
T Consensus       100 l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~-~~~---~~~~l---~~~~li~at~~~~~l~~~L~-sRf  171 (328)
T PRK00080        100 LEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPA-ARS---IRLDL---PPFTLIGATTRAGLLTSPLR-DRF  171 (328)
T ss_pred             cccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcc-ccc---eeecC---CCceEEeecCCcccCCHHHH-Hhc
Confidence            3211100 000111001122233344444445555555443 211   01111   22455666777554433321 011


Q ss_pred             CceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120          343 EKIRRDSVLFGGPLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       343 ~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~  373 (394)
                      ...++     ++++  +.++..+++.+.++.
T Consensus       172 ~~~~~-----l~~~--~~~e~~~il~~~~~~  195 (328)
T PRK00080        172 GIVQR-----LEFY--TVEELEKIVKRSARI  195 (328)
T ss_pred             Ceeee-----cCCC--CHHHHHHHHHHHHHH
Confidence            34677     9999  999999999988653

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.35  E-value=5.9e-06  Score=87.40  Aligned_cols=153  Identities=12%  Similarity=-0.010  Sum_probs=96.3

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc-------------------cCeeEEEEe
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY-------------------FDCLAWVRV  247 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv~v  247 (394)
                      +++|.+..+..|.+++..+. -...+.++|+.|+||||+|+.+++.......                   |.-.+++..
T Consensus        17 dIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidA   95 (944)
T PRK14949         17 QMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA   95 (944)
T ss_pred             HhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecc
Confidence            89999999999988887642 2345579999999999999999873211110                   001111111


Q ss_pred             CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEE
Q 016120          248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVL  325 (394)
Q Consensus       248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Ii  325 (394)
                      +....+.                      +...+.+.+... ..+++-++|||++.. +...++.|...+-.-..+.++|
T Consensus        96 as~~kVD----------------------dIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI  153 (944)
T PRK14949         96 ASRTKVD----------------------DTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL  153 (944)
T ss_pred             ccccCHH----------------------HHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence            1000000                      222233222221 246777999999998 6777888877776555566666


Q ss_pred             EecC-ChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          326 ITVT-DPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       326 vTTR-~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      ++|. ...+...+  .+....|+     +.+|  +.++....+.+.+
T Consensus       154 LaTTe~~kLl~TI--lSRCq~f~-----fkpL--s~eEI~~~L~~il  191 (944)
T PRK14949        154 LATTDPQKLPVTV--LSRCLQFN-----LKSL--TQDEIGTQLNHIL  191 (944)
T ss_pred             EECCCchhchHHH--HHhheEEe-----CCCC--CHHHHHHHHHHHH
Confidence            6554 44555443  23457788     9999  9999998888764

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=6e-06  Score=80.48  Aligned_cols=171  Identities=17%  Similarity=0.143  Sum_probs=112.8

Q ss_pred             ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcCcccccccC-e-eEEEEeCCCCCHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFD-C-LAWVRVSIAYDFGKMLDDIIK  262 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~-~~wv~vs~~~~~~~i~~~i~~  262 (394)
                      .+.+|+.+++++...|..-  +....-+.|+|..|+|||+.++.+..  +++.... . +++|++-...++..++..|+.
T Consensus        18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~   95 (366)
T COG1474          18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILN   95 (366)
T ss_pred             cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence            6889999999999888653  22333488999999999999999998  5544432 1 689999999999999999999


Q ss_pred             HhCCCCCCccccCcCHHHHHHHHHHHcc--CCeEEEEEeCCCC--CchhHHHHHhhCCCCC-CCcEEEE--ecCChHHHh
Q 016120          263 SVMPPSRVSVIIGEDYQLKKSILRDYLT--NKKYFIVLDDVFD--NSEIWSDLEELLPDDE-NGSRVLI--TVTDPDLLA  335 (394)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~-~gs~Iiv--TTR~~~v~~  335 (394)
                      +++....    ......+....+.+.+.  ++.+++|||++..  +... +.+...+.... ++++|++  .+-+..+..
T Consensus        96 ~~~~~p~----~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~  170 (366)
T COG1474          96 KLGKVPL----TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-EVLYSLLRAPGENKVKVSIIAVSNDDKFLD  170 (366)
T ss_pred             HcCCCCC----CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-hHHHHHHhhccccceeEEEEEEeccHHHHH
Confidence            9973322    22266777777777774  5889999999987  2211 33333333222 2454333  344433333


Q ss_pred             hch----hcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          336 SLE----MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       336 ~~~----~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .+.    +.-....+.     .+|=  +.++-...+..++
T Consensus       171 ~ld~rv~s~l~~~~I~-----F~pY--~a~el~~Il~~R~  203 (366)
T COG1474         171 YLDPRVKSSLGPSEIV-----FPPY--TAEELYDILRERV  203 (366)
T ss_pred             HhhhhhhhccCcceee-----eCCC--CHHHHHHHHHHHH
Confidence            221    001122255     7777  7888777777663

>PLN03025 replication factor C subunit; Provisional

Probab=98.31  E-value=6.5e-06  Score=79.18  Aligned_cols=155  Identities=14%  Similarity=0.115  Sum_probs=88.4

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCe-eEEEEeCCCCCHHHHHHHHHHHhC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDC-LAWVRVSIAYDFGKMLDDIIKSVM  265 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~  265 (394)
                      +++|.++.++.|..++..+  +.+.+.++|++|+||||+|+.+++.. ....|.. ++-++.+...... ..+++++...
T Consensus        14 ~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~   89 (319)
T PLN03025         14 DIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNKIKMFA   89 (319)
T ss_pred             HhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHHHHHHH
Confidence            8899988888887776654  34456799999999999999998731 1122221 1112222221111 1111111110


Q ss_pred             CCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hHHHhhchhcCC
Q 016120          266 PPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD-PDLLASLEMENG  342 (394)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~  342 (394)
                      ....                  .+ .++.-+++||++.. +......+...+-.-.+.+++++++.. ..+...+  .+.
T Consensus        90 ~~~~------------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L--~SR  149 (319)
T PLN03025         90 QKKV------------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPI--QSR  149 (319)
T ss_pred             hccc------------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhH--HHh
Confidence            0000                  01 24567899999988 444555565555433455677776643 2332222  123


Q ss_pred             CceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          343 EKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       343 ~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ..+++     +.++  +.++....+.+.+.
T Consensus       150 c~~i~-----f~~l--~~~~l~~~L~~i~~  172 (319)
T PLN03025        150 CAIVR-----FSRL--SDQEILGRLMKVVE  172 (319)
T ss_pred             hhccc-----CCCC--CHHHHHHHHHHHHH
Confidence            45677     9999  99998888887653

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.31  E-value=1.4e-05  Score=83.87  Aligned_cols=175  Identities=10%  Similarity=-0.017  Sum_probs=105.1

Q ss_pred             ccceecccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhcCccc---ccccC--eeEEEEeCCCCCHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYNNDHV---KFYFD--CLAWVRVSIAYDFGKMLD  258 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~i~~  258 (394)
                      .+.||++++++|...|...   .....++-|+|++|.|||++++.|....+.   +....  .+++|+...-.+...++.
T Consensus       756 ~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYq  835 (1164)
T PTZ00112        756 YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQ  835 (1164)
T ss_pred             cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHH
Confidence            6889999999999888652   223356779999999999999999873211   11122  246777766677888999


Q ss_pred             HHHHHhCCCCCCccccCc-CHHHHHHHHHHHcc---CCeEEEEEeCCCC-CchhHHHHHhhCC-CCCCCcEEEE--ecCC
Q 016120          259 DIIKSVMPPSRVSVIIGE-DYQLKKSILRDYLT---NKKYFIVLDDVFD-NSEIWSDLEELLP-DDENGSRVLI--TVTD  330 (394)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~---~kr~LlVlDdv~~-~~~~~~~l~~~l~-~~~~gs~Iiv--TTR~  330 (394)
                      .|..++....+    ... ........+...+.   ....+||||+|.. ....-+.|...+. ....+++|++  +|.+
T Consensus       836 vI~qqL~g~~P----~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd  911 (1164)
T PTZ00112        836 VLYKQLFNKKP----PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT  911 (1164)
T ss_pred             HHHHHHcCCCC----CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence            99998855433    122 33445555555542   2346899999987 1111122222221 1124556554  3332


Q ss_pred             hHHH----hhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          331 PDLL----ASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       331 ~~v~----~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      -+..    ..+.+.-....+.     .+|.  +.++-..++.+++.
T Consensus       912 lDLperLdPRLRSRLg~eeIv-----F~PY--TaEQL~dILk~RAe  950 (1164)
T PTZ00112        912 MDLPERLIPRCRSRLAFGRLV-----FSPY--KGDEIEKIIKERLE  950 (1164)
T ss_pred             hhcchhhhhhhhhcccccccc-----CCCC--CHHHHHHHHHHHHH
Confidence            1111    1110001123355     8999  99999999998864

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.30  E-value=1.3e-05  Score=80.79  Aligned_cols=153  Identities=7%  Similarity=0.019  Sum_probs=89.2

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc--ccC-----------------eeEEEEe
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF--YFD-----------------CLAWVRV  247 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~-----------------~~~wv~v  247 (394)
                      +++|.+.....|...+..+. -...+.++|++|+||||+|+.+.+......  .+.                 ....++.
T Consensus        15 divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a   93 (472)
T PRK14962         15 EVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA   93 (472)
T ss_pred             HccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence            89999888777777766542 335578999999999999999976311110  000                 1111121


Q ss_pred             CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEE
Q 016120          248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVL  325 (394)
Q Consensus       248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Ii  325 (394)
                      +......                      +...+.+..... ..+++-++|+|++.. +....+.+...+........+|
T Consensus        94 a~~~gid----------------------~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I  151 (472)
T PRK14962         94 ASNRGID----------------------EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV  151 (472)
T ss_pred             cccCCHH----------------------HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence            1111111                      111111111111 234667999999987 4555667776665444445444


Q ss_pred             EecCC-hHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          326 ITVTD-PDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       326 vTTR~-~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      ++|.+ ..+...+  .+...+++     +.++  +.++....+.+.+
T Consensus       152 lattn~~kl~~~L--~SR~~vv~-----f~~l--~~~el~~~L~~i~  189 (472)
T PRK14962        152 LATTNLEKVPPTI--ISRCQVIE-----FRNI--SDELIIKRLQEVA  189 (472)
T ss_pred             EEeCChHhhhHHH--hcCcEEEE-----ECCc--cHHHHHHHHHHHH
Confidence            44444 3454444  24556788     9999  9999888887764

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.30  E-value=9.7e-06  Score=83.33  Aligned_cols=169  Identities=12%  Similarity=0.041  Sum_probs=96.8

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|.+.....|.+++..+. -...+.++|+.|+||||+|+.+.+......      |+.. ..+..-...+.+...-..
T Consensus        16 dVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~~g~hp   87 (702)
T PRK14960         16 ELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVNEGRFI   87 (702)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHhcCCCC
Confidence            89999999999999987653 345778999999999999998876311110      1100 000000000111100000


Q ss_pred             CCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchh
Q 016120          267 PSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEM  339 (394)
Q Consensus       267 ~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~  339 (394)
                      .--.....+. ..++..+.+...    ..++.-++|+|++.. +...++.|...+-....+.++|++|.+. .+....  
T Consensus        88 DviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TI--  165 (702)
T PRK14960         88 DLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITV--  165 (702)
T ss_pred             ceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHH--
Confidence            0000000001 222222222211    235667899999998 5667788887776655667777777653 333332  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      .+....++     +.++  +.++....+.+.+.
T Consensus       166 lSRCq~fe-----FkpL--s~eEI~k~L~~Il~  191 (702)
T PRK14960        166 ISRCLQFT-----LRPL--AVDEITKHLGAILE  191 (702)
T ss_pred             HHhhheee-----ccCC--CHHHHHHHHHHHHH
Confidence            13456788     9999  99998888877653

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.29  E-value=1.4e-05  Score=76.52  Aligned_cols=154  Identities=14%  Similarity=0.083  Sum_probs=89.1

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEe--CCCCCHHHHHHHHHHHh
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRV--SIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~i~~~i~~~l  264 (394)
                      +++|++..++.+..++....  .+.+.++|.+|+||||+|+.+.+.. ....+.. .++.+  +....... ..+.+..+
T Consensus        18 ~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~~~~-~~~~i~~~   92 (319)
T PRK00440         18 EIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERGIDV-IRNKIKEF   92 (319)
T ss_pred             HhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccchHH-HHHHHHHH
Confidence            89999999999999886543  4457899999999999999998731 1111211 12222  22111111 11111111


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhcCC
Q 016120          265 MPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEMENG  342 (394)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~  342 (394)
                      ....+                  .....+-++++|++.. ....+..+...+......+++|+++... .+....  ...
T Consensus        93 ~~~~~------------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l--~sr  152 (319)
T PRK00440         93 ARTAP------------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPI--QSR  152 (319)
T ss_pred             HhcCC------------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhH--HHH
Confidence            00000                  0012356899999877 3445566766665555556777766432 222222  122


Q ss_pred             CceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          343 EKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       343 ~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ...++     +.++  +.++....+.+.+.
T Consensus       153 ~~~~~-----~~~l--~~~ei~~~l~~~~~  175 (319)
T PRK00440        153 CAVFR-----FSPL--KKEAVAERLRYIAE  175 (319)
T ss_pred             hheee-----eCCC--CHHHHHHHHHHHHH
Confidence            34677     9999  99988888877653

>TIGR00767 rho transcription termination factor Rho

Probab=98.28  E-value=2.5e-06  Score=82.84  Aligned_cols=93  Identities=12%  Similarity=-0.010  Sum_probs=61.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCC--CCHHHHHHHHHHHhCCCCCCccccCc-C-HHHHHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA--YDFGKMLDDIIKSVMPPSRVSVIIGE-D-YQLKKSIL  285 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~~-~-~~~~~~~l  285 (394)
                      ..++|+|++|+|||||++.+++.... +||+..+||.++++  .++.+++..++..+-........... . .....+..
T Consensus       169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A  247 (415)
T TIGR00767       169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA  247 (415)
T ss_pred             CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence            46789999999999999999995333 37999999999976  78999999884332222110000000 1 11222222


Q ss_pred             HHH-ccCCeEEEEEeCCCC
Q 016120          286 RDY-LTNKKYFIVLDDVFD  303 (394)
Q Consensus       286 ~~~-l~~kr~LlVlDdv~~  303 (394)
                      ... -.|++.+|++|++..
T Consensus       248 e~~~~~GkdVVLlIDEitR  266 (415)
T TIGR00767       248 KRLVEHKKDVVILLDSITR  266 (415)
T ss_pred             HHHHHcCCCeEEEEEChhH
Confidence            222 258999999999974

Members of this family differ in the specificity of RNA binding.

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.25  E-value=8.5e-06  Score=74.82  Aligned_cols=122  Identities=18%  Similarity=0.197  Sum_probs=72.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY  288 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~  288 (394)
                      ...+.|+|+.|+|||+|++.+++  .....-..+.++++.....                        ......+.+   
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~~~~~~------------------------~~~~~~~~~---   95 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLDKRAW------------------------FVPEVLEGM---   95 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEHHHHhh------------------------hhHHHHHHh---
Confidence            45788999999999999999988  3333223445665432100                        011111111   


Q ss_pred             ccCCeEEEEEeCCCC--CchhHHHHH-hhCCC-CCCC-cEEEEecCCh---------HHHhhchhcCCCceeeCCccCCC
Q 016120          289 LTNKKYFIVLDDVFD--NSEIWSDLE-ELLPD-DENG-SRVLITVTDP---------DLLASLEMENGEKIRRDSVLFGG  354 (394)
Q Consensus       289 l~~kr~LlVlDdv~~--~~~~~~~l~-~~l~~-~~~g-s~IivTTR~~---------~v~~~~~~~~~~~~~~~~~~~l~  354 (394)
                       . +--+|++||+..  ....|+... ..+.. ...| .++|+||+.+         ++...+   ....+++     ++
T Consensus        96 -~-~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl---~~g~~~~-----l~  165 (235)
T PRK08084         96 -E-QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRL---DWGQIYK-----LQ  165 (235)
T ss_pred             -h-hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHH---hCCceee-----ec
Confidence             1 123789999976  234454322 22211 1233 4699998865         333333   4557888     99


Q ss_pred             CCCCChHHHHHHHHHHh
Q 016120          355 PLIRLKHEAWQFFILHY  371 (394)
Q Consensus       355 ~L~~~~~~~~~Lf~~~~  371 (394)
                      ++  +.++-.+++.+++
T Consensus       166 ~~--~~~~~~~~l~~~a  180 (235)
T PRK08084        166 PL--SDEEKLQALQLRA  180 (235)
T ss_pred             CC--CHHHHHHHHHHHH
Confidence            99  9999999988764

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.24  E-value=2e-05  Score=77.62  Aligned_cols=163  Identities=12%  Similarity=0.025  Sum_probs=93.0

Q ss_pred             ccceecccHHHHHHHHhcCCC--------CceEEEEEcCCCccHHHHHHHHhcCcccccc--cC---ee--EEEEeCCCC
Q 016120          187 DINEFERGREELFDLLIEGPS--------GLAVVAILDSSGFDKTVFTADTYNNDHVKFY--FD---CL--AWVRVSIAY  251 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~--------~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~---~~--~wv~vs~~~  251 (394)
                      +++|.+..++.|.+.+..+..        -...+.++|+.|+|||++|+.+....--...  -.   |.  .++.-...+
T Consensus         6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp   85 (394)
T PRK07940          6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP   85 (394)
T ss_pred             hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence            688999999999998876421        2456789999999999999888652100000  00   00  000000111


Q ss_pred             CHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE
Q 016120          252 DFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI  326 (394)
Q Consensus       252 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv  326 (394)
                      ++..+        .....   .+  ..+++.+.....    ..+++-++++|++.. +....+.|...+-....++.+|+
T Consensus        86 D~~~i--------~~~~~---~i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL  152 (394)
T PRK07940         86 DVRVV--------APEGL---SI--GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLL  152 (394)
T ss_pred             CEEEe--------ccccc---cC--CHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEE
Confidence            10000        00000   00  222222222111    124556888899998 66666777777655555666666


Q ss_pred             ecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          327 TVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       327 TTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      +|.+. .+...+  .+....++     +.++  +.++....+.+..
T Consensus       153 ~a~~~~~llpTI--rSRc~~i~-----f~~~--~~~~i~~~L~~~~  189 (394)
T PRK07940        153 CAPSPEDVLPTI--RSRCRHVA-----LRTP--SVEAVAEVLVRRD  189 (394)
T ss_pred             EECChHHChHHH--HhhCeEEE-----CCCC--CHHHHHHHHHHhc
Confidence            66654 555454  24467888     9999  9999988887543

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.22  E-value=1.8e-05  Score=78.18  Aligned_cols=158  Identities=14%  Similarity=0.170  Sum_probs=89.0

Q ss_pred             ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|++..++++.+.+...           -...+-+.++|++|+|||++|+.+++  +...+     |+.++.    ..
T Consensus       132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~--~~~~~-----~i~v~~----~~  200 (389)
T PRK03992        132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNAT-----FIRVVG----SE  200 (389)
T ss_pred             HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH--HhCCC-----EEEeeh----HH
Confidence            8899999999998876421           12355678999999999999999998  33332     232211    11


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C-----------chhHHHHHhhCC---C--C
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N-----------SEIWSDLEELLP---D--D  318 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~-----------~~~~~~l~~~l~---~--~  318 (394)
                      +    .....+.         ....+...+...-...+.+|+||++.. .           ...+..+...+.   .  .
T Consensus       201 l----~~~~~g~---------~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~  267 (389)
T PRK03992        201 L----VQKFIGE---------GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP  267 (389)
T ss_pred             H----hHhhccc---------hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence            1    1111110         111222222222234678999999975 0           111222333221   1  1


Q ss_pred             CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120          319 ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP  375 (394)
Q Consensus       319 ~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~  375 (394)
                      ..+..||.||...+.....-..  .-...+.     +++.  +.++-.++|+.++...+
T Consensus       268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~-----v~~P--~~~~R~~Il~~~~~~~~  319 (389)
T PRK03992        268 RGNVKIIAATNRIDILDPAILRPGRFDRIIE-----VPLP--DEEGRLEILKIHTRKMN  319 (389)
T ss_pred             CCCEEEEEecCChhhCCHHHcCCccCceEEE-----ECCC--CHHHHHHHHHHHhccCC
Confidence            2355677777765422211001  1245677     9999  99999999988765433

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.21  E-value=2.3e-05  Score=81.04  Aligned_cols=172  Identities=8%  Similarity=0.006  Sum_probs=95.3

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc--cCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY--FDCLAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      +++|-+..+..|.+++..+. -...+.++|..|+||||+|+.+.+..-....  ......    ..+..-..-..|...-
T Consensus        17 dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~   91 (618)
T PRK14951         17 EMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR   91 (618)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence            89998888888888887653 3456689999999999999988542110000  000000    0000001111110000


Q ss_pred             CCCCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChHHHhhc
Q 016120          265 MPPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITV-TDPDLLASL  337 (394)
Q Consensus       265 ~~~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~  337 (394)
                      ..........+. ..++..+.+...    ..++.-++|||+|.. +...++.+...+-.-...+++|++| ....+....
T Consensus        92 h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TI  171 (618)
T PRK14951         92 FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTV  171 (618)
T ss_pred             CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHH
Confidence            000000000011 233333333221    124556899999998 6777888888876655566666555 444444333


Q ss_pred             hhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          338 EMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       338 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                        .+....++     +.+|  +.++....+.+.+.
T Consensus       172 --lSRc~~~~-----f~~L--s~eei~~~L~~i~~  197 (618)
T PRK14951        172 --LSRCLQFN-----LRPM--APETVLEHLTQVLA  197 (618)
T ss_pred             --HHhceeee-----cCCC--CHHHHHHHHHHHHH
Confidence              24467788     9999  99988888877654

>PRK04195 replication factor C large subunit; Provisional

Probab=98.21  E-value=1.8e-05  Score=80.47  Aligned_cols=150  Identities=15%  Similarity=0.160  Sum_probs=90.8

Q ss_pred             ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120          187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      +++|.+..++++.+|+..-  +...+.+.|+|++|+||||+|+.+++.  ..  |+. +-++.+..... .....++...
T Consensus        15 dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~~-ielnasd~r~~-~~i~~~i~~~   88 (482)
T PRK04195         15 DVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WEV-IELNASDQRTA-DVIERVAGEA   88 (482)
T ss_pred             HhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CCE-EEEcccccccH-HHHHHHHHHh
Confidence            8999999999999998652  223678889999999999999999984  32  222 22344432222 2223333222


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cc----hhHHHHHhhCCCCCCCcEEEEecCCh-HHHh-hc
Q 016120          265 MPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NS----EIWSDLEELLPDDENGSRVLITVTDP-DLLA-SL  337 (394)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~----~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~-~~  337 (394)
                      .....                  ....++-+||||+++. ..    ..+..+...+..  .+..||+|+.+. .... .+
T Consensus        89 ~~~~s------------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L  148 (482)
T PRK04195         89 ATSGS------------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL  148 (482)
T ss_pred             hccCc------------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence            11100                  0113678999999987 21    335566555542  234466666443 2211 12


Q ss_pred             hhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          338 EMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       338 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                        ......++     +.++  +.++....+.+.+
T Consensus       149 --rsr~~~I~-----f~~~--~~~~i~~~L~~i~  173 (482)
T PRK04195        149 --RNACLMIE-----FKRL--STRSIVPVLKRIC  173 (482)
T ss_pred             --hccceEEE-----ecCC--CHHHHHHHHHHHH
Confidence              13345677     9999  9988888887764

>PRK09087 hypothetical protein; Validated

Probab=98.19  E-value=2.7e-05  Score=71.05  Aligned_cols=112  Identities=15%  Similarity=0.140  Sum_probs=68.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY  288 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~  288 (394)
                      .+.+.|+|+.|+|||+|++.+++..  .     ..+++..      ....+++                         ..
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~--~-----~~~i~~~------~~~~~~~-------------------------~~   85 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKS--D-----ALLIHPN------EIGSDAA-------------------------NA   85 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhc--C-----CEEecHH------HcchHHH-------------------------Hh
Confidence            4568999999999999999988732  1     1233221      1101111                         11


Q ss_pred             ccCCeEEEEEeCCCC---CchhHHHHHhhCCCCCCCcEEEEecCC---------hHHHhhchhcCCCceeeCCccCCCCC
Q 016120          289 LTNKKYFIVLDDVFD---NSEIWSDLEELLPDDENGSRVLITVTD---------PDLLASLEMENGEKIRRDSVLFGGPL  356 (394)
Q Consensus       289 l~~kr~LlVlDdv~~---~~~~~~~l~~~l~~~~~gs~IivTTR~---------~~v~~~~~~~~~~~~~~~~~~~l~~L  356 (394)
                      +.+  -+|++||+..   +...+-.+...+.  ..|..||+|++.         ++....+   ....+++     ++++
T Consensus        86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl---~~gl~~~-----l~~p  153 (226)
T PRK09087         86 AAE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRL---KAATVVE-----IGEP  153 (226)
T ss_pred             hhc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHH---hCCceee-----cCCC
Confidence            111  2788899965   1223333333322  346678988873         3344444   4567888     9999


Q ss_pred             CCChHHHHHHHHHHhC
Q 016120          357 IRLKHEAWQFFILHYG  372 (394)
Q Consensus       357 ~~~~~~~~~Lf~~~~~  372 (394)
                        +.++-..++.+++.
T Consensus       154 --d~e~~~~iL~~~~~  167 (226)
T PRK09087        154 --DDALLSQVIFKLFA  167 (226)
T ss_pred             --CHHHHHHHHHHHHH
Confidence              99999999998864

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.17  E-value=6.5e-05  Score=66.43  Aligned_cols=71  Identities=15%  Similarity=0.270  Sum_probs=50.8

Q ss_pred             CCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHH
Q 016120          291 NKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFI  368 (394)
Q Consensus       291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~  368 (394)
                      +.+-++|+||+.. +...++.+...+....+.+.+|++|++. .+...+  .+...+++     +.|+  +.++..+.+.
T Consensus        95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i--~sr~~~~~-----~~~~--~~~~~~~~l~  165 (188)
T TIGR00678        95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI--RSRCQVLP-----FPPL--SEEALLQWLI  165 (188)
T ss_pred             CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH--HhhcEEee-----CCCC--CHHHHHHHHH
Confidence            4667899999987 5667788888886666667777777654 333333  23456788     9999  9999888777


Q ss_pred             HH
Q 016120          369 LH  370 (394)
Q Consensus       369 ~~  370 (394)
                      +.
T Consensus       166 ~~  167 (188)
T TIGR00678       166 RQ  167 (188)
T ss_pred             Hc
Confidence            65

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.17  E-value=2.7e-05  Score=74.68  Aligned_cols=145  Identities=14%  Similarity=0.148  Sum_probs=83.8

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|.+...+.+..++..+ .....+.++|++|+|||++|+.+++.  ....   ...++.+. ..... ..+.+...  
T Consensus        22 ~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~~~-i~~~l~~~--   91 (316)
T PHA02544         22 ECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRIDF-VRNRLTRF--   91 (316)
T ss_pred             HhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccHHH-HHHHHHHH--
Confidence            8999999999999988754 23567777999999999999999883  3221   23333333 11111 11111110  


Q ss_pred             CCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-C-chhHHHHHhhCCCCCCCcEEEEecCChH-HHhhchhcCC
Q 016120          267 PSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-N-SEIWSDLEELLPDDENGSRVLITVTDPD-LLASLEMENG  342 (394)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~-~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~~~~  342 (394)
                                        .... +.+.+-++|+|++.. + ......+...+.....++++|+||.... +...+  .+.
T Consensus        92 ------------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l--~sR  151 (316)
T PHA02544         92 ------------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPL--RSR  151 (316)
T ss_pred             ------------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHH--Hhh
Confidence                              0000 113456789999986 1 2233444444444456778888886542 22222  123


Q ss_pred             CceeeCCccCCCCCCCChHHHHHHHH
Q 016120          343 EKIRRDSVLFGGPLIRLKHEAWQFFI  368 (394)
Q Consensus       343 ~~~~~~~~~~l~~L~~~~~~~~~Lf~  368 (394)
                      ...+.     ++..  +.++...++.
T Consensus       152 ~~~i~-----~~~p--~~~~~~~il~  170 (316)
T PHA02544        152 CRVID-----FGVP--TKEEQIEMMK  170 (316)
T ss_pred             ceEEE-----eCCC--CHHHHHHHHH
Confidence            34666     7777  7777665543

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.17  E-value=1.7e-05  Score=78.53  Aligned_cols=175  Identities=10%  Similarity=-0.035  Sum_probs=93.4

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEE-eCCCCCHHHHHHHHHHHhC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVR-VSIAYDFGKMLDDIIKSVM  265 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~i~~~i~~~l~  265 (394)
                      +++|.+..++.|..++..+. -...+.++|+.|+||||+|..+.+...-...+...-|.. .......-..-..+.....
T Consensus        17 eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~   95 (397)
T PRK14955         17 DITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTS   95 (397)
T ss_pred             hccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCC
Confidence            89999988888888886542 234577899999999999998876321111010000110 0000000011111111000


Q ss_pred             CCCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChHHHhhch
Q 016120          266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITV-TDPDLLASLE  338 (394)
Q Consensus       266 ~~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~~  338 (394)
                      .........+. ..+++.+.....    ..+++-++|+|++.. +...++.+...+....+.+.+|++| +...+...+ 
T Consensus        96 ~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl-  174 (397)
T PRK14955         96 LNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI-  174 (397)
T ss_pred             CCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHH-
Confidence            00000000011 233333322222    134566889999987 5567888888887666667766554 444544433 


Q ss_pred             hcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          339 MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       339 ~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                       .....+++     +.++  +.++....+.+.+
T Consensus       175 -~sR~~~v~-----f~~l--~~~ei~~~l~~~~  199 (397)
T PRK14955        175 -ASRCQRFN-----FKRI--PLEEIQQQLQGIC  199 (397)
T ss_pred             -HHHHHHhh-----cCCC--CHHHHHHHHHHHH
Confidence             12345677     9999  8888777776654

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=98.16  E-value=5.4e-05  Score=73.78  Aligned_cols=152  Identities=11%  Similarity=0.026  Sum_probs=92.1

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcc--cc------------------cccCeeEEEE
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDH--VK------------------FYFDCLAWVR  246 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~--~~------------------~~F~~~~wv~  246 (394)
                      +++|.+..++.+.+++..+. -...+.++|++|+||||+|+.+.....  ..                  .+++. +++.
T Consensus        15 ~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~   92 (355)
T TIGR02397        15 DVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID   92 (355)
T ss_pred             hccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence            89999999999999886543 345678899999999999988865211  00                  12222 2222


Q ss_pred             eCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEE
Q 016120          247 VSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRV  324 (394)
Q Consensus       247 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~I  324 (394)
                      .+......                      +...+.+.+... ..+++-++|+|++.. +...++.+...+......+.+
T Consensus        93 ~~~~~~~~----------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l  150 (355)
T TIGR02397        93 AASNNGVD----------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF  150 (355)
T ss_pred             ccccCCHH----------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence            11111100                      112222222111 124556889999877 455677777777555556777


Q ss_pred             EEecCChH-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          325 LITVTDPD-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       325 ivTTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      |++|.+.+ +...+  .+....++     +.++  +.++....+.+.+
T Consensus       151 Il~~~~~~~l~~~l--~sr~~~~~-----~~~~--~~~~l~~~l~~~~  189 (355)
T TIGR02397       151 ILATTEPHKIPATI--LSRCQRFD-----FKRI--PLEDIVERLKKIL  189 (355)
T ss_pred             EEEeCCHHHHHHHH--HhheeEEE-----cCCC--CHHHHHHHHHHHH
Confidence            77765553 33333  13345777     8999  9888888787654

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.16  E-value=3.2e-05  Score=77.83  Aligned_cols=154  Identities=8%  Similarity=-0.024  Sum_probs=96.0

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc------cc------------c-cccCeeEEEEe
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND------HV------------K-FYFDCLAWVRV  247 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~------~~------------~-~~F~~~~wv~v  247 (394)
                      +++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+....      ..            . ..+.-++.++.
T Consensus        14 dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida   92 (491)
T PRK14964         14 DLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA   92 (491)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence            89999988888888776543 23477899999999999998886510      00            0 01111233333


Q ss_pred             CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEE
Q 016120          248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVL  325 (394)
Q Consensus       248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Ii  325 (394)
                      +.+..+..                      ...+.+..... ..++.-++|+|++.. +...++.|...+-.-.+.+++|
T Consensus        93 as~~~vdd----------------------IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI  150 (491)
T PRK14964         93 ASNTSVDD----------------------IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI  150 (491)
T ss_pred             ccCCCHHH----------------------HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence            22222211                      12222221111 134666899999987 5666788888877666677766


Q ss_pred             Eec-CChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          326 ITV-TDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       326 vTT-R~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ++| ..+.+...+  .+....++     +.++  +.++....+.+.+.
T Consensus       151 latte~~Kl~~tI--~SRc~~~~-----f~~l--~~~el~~~L~~ia~  189 (491)
T PRK14964        151 LATTEVKKIPVTI--ISRCQRFD-----LQKI--PTDKLVEHLVDIAK  189 (491)
T ss_pred             EEeCChHHHHHHH--HHhheeee-----cccc--cHHHHHHHHHHHHH
Confidence            655 445555544  24567788     9999  98888888877654

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.15  E-value=2.2e-05  Score=81.45  Aligned_cols=164  Identities=11%  Similarity=-0.016  Sum_probs=96.0

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH---
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS---  263 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~---  263 (394)
                      +++|.+..+..|.+.+..+. -...+.++|..|+||||+|+.+.+.......+.       +..+..-.....|...   
T Consensus        17 divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g~~~   88 (647)
T PRK07994         17 EVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQGRFV   88 (647)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcCCCC
Confidence            89999999999888887643 234567899999999999999976311110000       0000001111111100   


Q ss_pred             ----hCCCCCCccccCc-CHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChHHHh
Q 016120          264 ----VMPPSRVSVIIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITV-TDPDLLA  335 (394)
Q Consensus       264 ----l~~~~~~~~~~~~-~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~  335 (394)
                          +....    .... +..++.+.+... ..+++-++|||++.. +...++.|...+-.-....++|++| ..+.+..
T Consensus        89 D~ieidaas----~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~  164 (647)
T PRK07994         89 DLIEIDAAS----RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV  164 (647)
T ss_pred             Cceeecccc----cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence                00000    0010 222233332222 246677999999998 6777888877776555566655544 4455554


Q ss_pred             hchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          336 SLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       336 ~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .+  .+....++     +.+|  +.++....+.+.+
T Consensus       165 TI--~SRC~~~~-----f~~L--s~~ei~~~L~~il  191 (647)
T PRK07994        165 TI--LSRCLQFH-----LKAL--DVEQIRQQLEHIL  191 (647)
T ss_pred             HH--HhhheEee-----CCCC--CHHHHHHHHHHHH
Confidence            43  23467788     9999  9999988887764

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.15  E-value=2.7e-05  Score=79.31  Aligned_cols=150  Identities=11%  Similarity=0.009  Sum_probs=93.2

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc-------------------ccCeeEEEEe
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF-------------------YFDCLAWVRV  247 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~v  247 (394)
                      +++|-+..+..|.+++..+. -...+.++|+.|+||||+|+.+.+..--..                   .|.-.+.+..
T Consensus        17 divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida   95 (509)
T PRK14958         17 EVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA   95 (509)
T ss_pred             HhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence            89999999999999997653 234567999999999999998876311111                   1111222221


Q ss_pred             CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHH---H-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCc
Q 016120          248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD---Y-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGS  322 (394)
Q Consensus       248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~---~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs  322 (394)
                      +.+.                         ..++..+.+..   . ..++.-++|+|++.. +....+.+...+-.-...+
T Consensus        96 as~~-------------------------~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~  150 (509)
T PRK14958         96 ASRT-------------------------KVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHV  150 (509)
T ss_pred             cccC-------------------------CHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCe
Confidence            1111                         22333222221   1 135667899999998 6677788887776666677


Q ss_pred             EEEEecCC-hHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          323 RVLITVTD-PDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       323 ~IivTTR~-~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      ++|++|.+ ..+...+  .+....++     +.++  +.++....+.+.+
T Consensus       151 ~fIlattd~~kl~~tI--~SRc~~~~-----f~~l--~~~~i~~~l~~il  191 (509)
T PRK14958        151 KFILATTDHHKLPVTV--LSRCLQFH-----LAQL--PPLQIAAHCQHLL  191 (509)
T ss_pred             EEEEEECChHhchHHH--HHHhhhhh-----cCCC--CHHHHHHHHHHHH
Confidence            76665544 3444333  23446677     8999  8887766665554

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.12  E-value=6.7e-05  Score=70.89  Aligned_cols=135  Identities=13%  Similarity=0.053  Sum_probs=72.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHcc
Q 016120          211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLT  290 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~  290 (394)
                      -+.++|++|+|||++|+.+..-..-........|+.++.    .    +++..+.+.         +.......+.+.  
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~---------~~~~~~~~~~~a--  120 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGH---------TAPKTKEILKRA--  120 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhccc---------chHHHHHHHHHc--
Confidence            577999999999999977765211111111123444442    1    122222111         112222222222  


Q ss_pred             CCeEEEEEeCCCC----------CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchh-----cCCCceeeCCccCCCC
Q 016120          291 NKKYFIVLDDVFD----------NSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEM-----ENGEKIRRDSVLFGGP  355 (394)
Q Consensus       291 ~kr~LlVlDdv~~----------~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~-----~~~~~~~~~~~~~l~~  355 (394)
                       ..-+|+||++..          ..+.++.+...+.....+.+||.++...........     ......++     +++
T Consensus       121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~-----fp~  194 (284)
T TIGR02880       121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVD-----FPD  194 (284)
T ss_pred             -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEE-----eCC
Confidence             336899999963          022345555555554455667776654332222100     01135678     999


Q ss_pred             CCCChHHHHHHHHHHhC
Q 016120          356 LIRLKHEAWQFFILHYG  372 (394)
Q Consensus       356 L~~~~~~~~~Lf~~~~~  372 (394)
                      +  +.+|-..++.+.+.
T Consensus       195 l--~~edl~~I~~~~l~  209 (284)
T TIGR02880       195 Y--SEAELLVIAGLMLK  209 (284)
T ss_pred             c--CHHHHHHHHHHHHH
Confidence            9  99999999988753

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.12  E-value=7.8e-06  Score=80.68  Aligned_cols=106  Identities=13%  Similarity=0.118  Sum_probs=71.5

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      ++++.+...+.+...|...    +.+.++|++|+|||++|+.+++......+|+.+.||+++..++.......+    .+
T Consensus       176 d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~----rP  247 (459)
T PRK11331        176 DLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY----RP  247 (459)
T ss_pred             cccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc----CC
Confidence            7788899999999999764    467789999999999999999854444567888899999988766543322    11


Q ss_pred             CCCCccccCcCHHHHHHHHHHHc--cCCeEEEEEeCCCC
Q 016120          267 PSRVSVIIGEDYQLKKSILRDYL--TNKKYFIVLDDVFD  303 (394)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~  303 (394)
                      ...   .+.....-..+.+....  .+++++||+|++..
T Consensus       248 ~~v---gy~~~~G~f~~~~~~A~~~p~~~~vliIDEINR  283 (459)
T PRK11331        248 NGV---GFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINR  283 (459)
T ss_pred             CCC---CeEecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence            100   01111111222223322  24789999999987

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.10  E-value=2.8e-05  Score=80.57  Aligned_cols=151  Identities=12%  Similarity=0.081  Sum_probs=90.7

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc-------------------cCeeEEEEe
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY-------------------FDCLAWVRV  247 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv~v  247 (394)
                      +++|.+..+..|.+++..+. -...+.++|+.|+||||+|+.+.+.......                   |.-.+.+..
T Consensus        17 dIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEida   95 (709)
T PRK08691         17 DLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDA   95 (709)
T ss_pred             HHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEec
Confidence            89999999999999987643 2456789999999999999988763111100                   000111111


Q ss_pred             CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCc
Q 016120          248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGS  322 (394)
Q Consensus       248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs  322 (394)
                      +.+.                         ..+.+.+.+...    ..+++-++|+|++.. +....+.|...+-.-...+
T Consensus        96 As~~-------------------------gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v  150 (709)
T PRK08691         96 ASNT-------------------------GIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV  150 (709)
T ss_pred             cccC-------------------------CHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCc
Confidence            1111                         222222222211    235667899999987 4555666776665444556


Q ss_pred             EEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          323 RVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       323 ~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ++|++|.+. .+...+  .+....++     +.++  +.++....+.+.+.
T Consensus       151 ~fILaTtd~~kL~~TI--rSRC~~f~-----f~~L--s~eeI~~~L~~Il~  192 (709)
T PRK08691        151 KFILATTDPHKVPVTV--LSRCLQFV-----LRNM--TAQQVADHLAHVLD  192 (709)
T ss_pred             EEEEEeCCccccchHH--HHHHhhhh-----cCCC--CHHHHHHHHHHHHH
Confidence            677666543 333222  12334556     8899  99888887777643

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=98.10  E-value=5.7e-05  Score=72.05  Aligned_cols=112  Identities=18%  Similarity=0.266  Sum_probs=80.8

Q ss_pred             ccceecccHHHHHHHHhcCCCCc-eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhC
Q 016120          187 DINEFERGREELFDLLIEGPSGL-AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVM  265 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~  265 (394)
                      ++.+|+..+..+...+...+... ..+-|.|.+|.|||.+.+.+.+....     ..+|+++-+.++...++..|+.+..
T Consensus         7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~~   81 (438)
T KOG2543|consen    7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKSQ   81 (438)
T ss_pred             CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHhc
Confidence            78899999999998887766543 45589999999999999999985422     3489999999999999999999996


Q ss_pred             CCCCCc--cccCc-CHHHHHHHHHHH--cc--CCeEEEEEeCCCC
Q 016120          266 PPSRVS--VIIGE-DYQLKKSILRDY--LT--NKKYFIVLDDVFD  303 (394)
Q Consensus       266 ~~~~~~--~~~~~-~~~~~~~~l~~~--l~--~kr~LlVlDdv~~  303 (394)
                      ....++  ...+. +..+....+.++  .+  ++.++|||||++.
T Consensus        82 ~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~  126 (438)
T KOG2543|consen   82 LADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA  126 (438)
T ss_pred             cCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh
Confidence            322211  00111 233334444442  22  4689999999987

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.10  E-value=2.7e-05  Score=79.74  Aligned_cols=168  Identities=10%  Similarity=-0.001  Sum_probs=92.5

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.....      |.-|.... .+..-.....+......
T Consensus        17 dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~~-~Cg~C~sCr~i~~~~h~   88 (605)
T PRK05896         17 QIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDGD-CCNSCSVCESINTNQSV   88 (605)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCCC-CCcccHHHHHHHcCCCC
Confidence            89999999999998886643 345677999999999999999876211      11121100 01111111111111000


Q ss_pred             CCCCccccCc-CHH---HHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChHHHhhchh
Q 016120          267 PSRVSVIIGE-DYQ---LKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITV-TDPDLLASLEM  339 (394)
Q Consensus       267 ~~~~~~~~~~-~~~---~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v~~~~~~  339 (394)
                      .-......+. ..+   .+...+... ..+++-++|+|++.. +...++.|...+-....++.+|++| ....+....  
T Consensus        89 DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI--  166 (605)
T PRK05896         89 DIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI--  166 (605)
T ss_pred             ceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH--
Confidence            0000000001 222   222222211 123444699999987 5667788877776555556665544 444554333  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .+....++     +.++  +.++....+.+.+
T Consensus       167 ~SRcq~ie-----F~~L--s~~eL~~~L~~il  191 (605)
T PRK05896        167 ISRCQRYN-----FKKL--NNSELQELLKSIA  191 (605)
T ss_pred             Hhhhhhcc-----cCCC--CHHHHHHHHHHHH
Confidence            13455777     9999  9988887777754

>CHL00181 cbbX CbbX; Provisional

Probab=98.10  E-value=0.00011  Score=69.46  Aligned_cols=159  Identities=10%  Similarity=0.034  Sum_probs=83.5

Q ss_pred             ccceecccHHHHHHHH---hcC----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCH
Q 016120          187 DINEFERGREELFDLL---IEG----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDF  253 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L---~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~  253 (394)
                      +++|.+..+++|.++.   ...          ......+.++|++|+||||+|+.+++.......-...-|+.++.    
T Consensus        24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----   99 (287)
T CHL00181         24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----   99 (287)
T ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----
Confidence            5778766666554432   211          11223477899999999999999976211011111112454441    


Q ss_pred             HHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC----------CchhHHHHHhhCCCCCCCcE
Q 016120          254 GKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD----------NSEIWSDLEELLPDDENGSR  323 (394)
Q Consensus       254 ~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~----------~~~~~~~l~~~l~~~~~gs~  323 (394)
                      ..    +.....+.         +.......+.+.   ..-+|+||++..          ..+..+.|...+.....+.+
T Consensus       100 ~~----l~~~~~g~---------~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~  163 (287)
T CHL00181        100 DD----LVGQYIGH---------TAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLV  163 (287)
T ss_pred             HH----HHHHHhcc---------chHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence            11    22222111         111122222222   234899999964          02233444555544445567


Q ss_pred             EEEecCChHHHhhchh-----cCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          324 VLITVTDPDLLASLEM-----ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       324 IivTTR~~~v~~~~~~-----~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ||+++....+......     +.....+.     ++++  +.++..+++.+.+.
T Consensus       164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~-----F~~~--t~~el~~I~~~~l~  210 (287)
T CHL00181        164 VIFAGYKDRMDKFYESNPGLSSRIANHVD-----FPDY--TPEELLQIAKIMLE  210 (287)
T ss_pred             EEEeCCcHHHHHHHhcCHHHHHhCCceEE-----cCCc--CHHHHHHHHHHHHH
Confidence            7777764443221100     11245778     9999  99999999888753

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.08  E-value=3.2e-05  Score=79.17  Aligned_cols=150  Identities=10%  Similarity=0.033  Sum_probs=91.8

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc-------------------ccCeeEEEEe
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF-------------------YFDCLAWVRV  247 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~v  247 (394)
                      +++|.+..+..+.+++..+. -...+.++|+.|+||||+|+.+........                   .|.-.+++..
T Consensus        17 divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~   95 (527)
T PRK14969         17 ELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA   95 (527)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence            89999999999998887643 234567899999999999999875311100                   0111122211


Q ss_pred             CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCc
Q 016120          248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGS  322 (394)
Q Consensus       248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs  322 (394)
                      +.+.                         ..+++.+.+...    ..+++-++|+|++.. +....+.+...+-.....+
T Consensus        96 ~~~~-------------------------~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~  150 (527)
T PRK14969         96 ASNT-------------------------QVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHV  150 (527)
T ss_pred             cccC-------------------------CHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCE
Confidence            1111                         222222222211    135677999999988 5566777777776655566


Q ss_pred             EEEEecCC-hHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          323 RVLITVTD-PDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       323 ~IivTTR~-~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .+|++|.+ +.+...+  .+....++     +.++  +.++....+.+.+
T Consensus       151 ~fIL~t~d~~kil~tI--~SRc~~~~-----f~~l--~~~~i~~~L~~il  191 (527)
T PRK14969        151 KFILATTDPQKIPVTV--LSRCLQFN-----LKQM--PPPLIVSHLQHIL  191 (527)
T ss_pred             EEEEEeCChhhCchhH--HHHHHHHh-----cCCC--CHHHHHHHHHHHH
Confidence            66665544 3333222  12345677     9999  9888887777664

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.08  E-value=3.7e-05  Score=76.81  Aligned_cols=168  Identities=10%  Similarity=-0.052  Sum_probs=95.3

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|.+..+..|..++..+. -...+.++|+.|+||||+|+.+.+...... ....   .....+..   -..+......
T Consensus        19 dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~-~~~~---~pCg~C~s---C~~i~~g~~~   90 (484)
T PRK14956         19 DVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCEN-PIGN---EPCNECTS---CLEITKGISS   90 (484)
T ss_pred             HHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCccc-ccCc---cccCCCcH---HHHHHccCCc
Confidence            89999999999888887653 234578999999999999999987311110 0000   00000000   1111111100


Q ss_pred             CCCCc---cccCc-CHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhchh
Q 016120          267 PSRVS---VIIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASLEM  339 (394)
Q Consensus       267 ~~~~~---~~~~~-~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~~~  339 (394)
                      .-...   ..... +..++.+.+... ..++.-++|+|++.. +...++.|...+-........|+ ||....+...+  
T Consensus        91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI--  168 (484)
T PRK14956         91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI--  168 (484)
T ss_pred             cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH--
Confidence            00000   00001 222333333322 235667999999998 67778888777754444555444 55545554444  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .+....|+     +.++  +.++....+.+..
T Consensus       169 ~SRCq~~~-----f~~l--s~~~i~~~L~~i~  193 (484)
T PRK14956        169 LSRCQDFI-----FKKV--PLSVLQDYSEKLC  193 (484)
T ss_pred             Hhhhheee-----ecCC--CHHHHHHHHHHHH
Confidence            24456788     9999  9988888887764

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=98.07  E-value=5.3e-05  Score=81.01  Aligned_cols=167  Identities=8%  Similarity=-0.056  Sum_probs=95.5

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.....+....       ..+..-.....|... +.
T Consensus        16 eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~g-~~   86 (824)
T PRK07764         16 EVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAPG-GP   86 (824)
T ss_pred             HhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHcC-CC
Confidence            89999999999999887653 2345789999999999999998763211110000       000000000000000 00


Q ss_pred             CCCCc---cccCc-CHHHHHH---HHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecC-ChHHHhh
Q 016120          267 PSRVS---VIIGE-DYQLKKS---ILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVT-DPDLLAS  336 (394)
Q Consensus       267 ~~~~~---~~~~~-~~~~~~~---~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR-~~~v~~~  336 (394)
                      ...+-   ...+. ..+++.+   .+... ..++.-++|||++.. +...++.|...+-.-...+.+|++|. ...+...
T Consensus        87 ~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~T  166 (824)
T PRK07764         87 GSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGT  166 (824)
T ss_pred             CCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence            00000   00000 2222222   22111 235566889999998 67788888888876666666665554 4455554


Q ss_pred             chhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          337 LEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       337 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      +  .+....|+     +.++  +.++....+.+.+
T Consensus       167 I--rSRc~~v~-----F~~l--~~~~l~~~L~~il  192 (824)
T PRK07764        167 I--RSRTHHYP-----FRLV--PPEVMRGYLERIC  192 (824)
T ss_pred             H--HhheeEEE-----eeCC--CHHHHHHHHHHHH
Confidence            4  24567888     9999  9888877777654

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.07  E-value=7.6e-05  Score=76.91  Aligned_cols=168  Identities=10%  Similarity=-0.045  Sum_probs=94.7

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+...-....+   +    ..++.-..-..|...-+.
T Consensus        14 eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~~~~~~   85 (584)
T PRK14952         14 EVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALAPNGPG   85 (584)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhhcccCC
Confidence            89999999999999887642 344567999999999999998876311101000   0    000000001111100000


Q ss_pred             CCCC----c-cccCc-CHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhc
Q 016120          267 PSRV----S-VIIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASL  337 (394)
Q Consensus       267 ~~~~----~-~~~~~-~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~  337 (394)
                      ....    . ..... +..++.+.+... ..+++-++|+|++.. +....+.|...+-.-...+.+|+ ||..+.+...+
T Consensus        86 ~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI  165 (584)
T PRK14952         86 SIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTI  165 (584)
T ss_pred             CceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHH
Confidence            0000    0 00000 222233232221 134566899999987 66777888888776555666555 55555555544


Q ss_pred             hhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          338 EMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       338 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                        .+....++     +.++  +.++..+.+.+.+
T Consensus       166 --~SRc~~~~-----F~~l--~~~~i~~~L~~i~  190 (584)
T PRK14952        166 --RSRTHHYP-----FRLL--PPRTMRALIARIC  190 (584)
T ss_pred             --HHhceEEE-----eeCC--CHHHHHHHHHHHH
Confidence              23467788     9999  9888877776653

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.05  E-value=7.9e-05  Score=77.32  Aligned_cols=175  Identities=9%  Similarity=-0.025  Sum_probs=93.5

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEE-eCCCCCHHHHHHHHHHHhC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVR-VSIAYDFGKMLDDIIKSVM  265 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~i~~~i~~~l~  265 (394)
                      +++|.+..+..|.+.+..+. -...+.++|+.|+||||+|+.+.+.......++...|-. +...+..-...+.+...-.
T Consensus        17 eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~   95 (620)
T PRK14954         17 DITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTS   95 (620)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCC
Confidence            89999998898888886542 334578999999999999988875311111110000110 0000000011111110000


Q ss_pred             CCCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhch
Q 016120          266 PPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASLE  338 (394)
Q Consensus       266 ~~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~~  338 (394)
                      ..-........ ..+++...+...    ..+++-++|+|++.. +....+.|...+-.-...+.+|+ |++...+...+ 
T Consensus        96 ~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI-  174 (620)
T PRK14954         96 LNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI-  174 (620)
T ss_pred             CCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH-
Confidence            00000000011 233333322222    234556789999988 55667888888766555666555 44444554443 


Q ss_pred             hcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          339 MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       339 ~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                       .....+++     +.++  +.++....+.+.+
T Consensus       175 -~SRc~~ve-----f~~l--~~~ei~~~L~~i~  199 (620)
T PRK14954        175 -ASRCQRFN-----FKRI--PLDEIQSQLQMIC  199 (620)
T ss_pred             -HhhceEEe-----cCCC--CHHHHHHHHHHHH
Confidence             24567788     9999  9888777776653

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.05  E-value=5.9e-05  Score=78.08  Aligned_cols=172  Identities=9%  Similarity=-0.049  Sum_probs=95.3

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCe--eEEEEeCCCCCHHHHHHHHHHHh
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDC--LAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      +++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+..........  ..+-    .+..-..-+.|....
T Consensus        25 dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i~~g~   99 (598)
T PRK09111         25 DLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAIMEGR   99 (598)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHHhcCC
Confidence            89999999999999887653 3446778999999999999999763211110000  0000    000000011111110


Q ss_pred             CCCCCCccccCc-CHHHHHH---HHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhc
Q 016120          265 MPPSRVSVIIGE-DYQLKKS---ILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASL  337 (394)
Q Consensus       265 ~~~~~~~~~~~~-~~~~~~~---~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~  337 (394)
                      ...-......+. ..+++.+   .+... ..+++-++|+|++.. +....+.|...+-.-..++++|+ ||....+...+
T Consensus       100 h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI  179 (598)
T PRK09111        100 HVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTV  179 (598)
T ss_pred             CCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHH
Confidence            000000000001 2333322   22211 134556799999987 55667778877766556677665 44444554444


Q ss_pred             hhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          338 EMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       338 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                        .+....++     +.++  +.++....+.+.+.
T Consensus       180 --~SRcq~~~-----f~~l--~~~el~~~L~~i~~  205 (598)
T PRK09111        180 --LSRCQRFD-----LRRI--EADVLAAHLSRIAA  205 (598)
T ss_pred             --HhheeEEE-----ecCC--CHHHHHHHHHHHHH
Confidence              23456788     9999  99888888877643

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.04  E-value=7.3e-05  Score=68.16  Aligned_cols=142  Identities=11%  Similarity=0.043  Sum_probs=72.8

Q ss_pred             ccc-eecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhC
Q 016120          187 DIN-EFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVM  265 (394)
Q Consensus       187 ~~~-Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~  265 (394)
                      +|+ |.+.........+.........+.|+|..|+|||+||+.+++... .... ...+++.....              
T Consensus        19 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~--------------   82 (227)
T PRK08903         19 NFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL--------------   82 (227)
T ss_pred             ccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH--------------
Confidence            555 444333333333322223345778999999999999999988321 1111 23344322110              


Q ss_pred             CCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCC-CCCc-EEEEecCChHHHhhch----
Q 016120          266 PPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDD-ENGS-RVLITVTDPDLLASLE----  338 (394)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-~~gs-~IivTTR~~~v~~~~~----  338 (394)
                                       ..+ ... ...-+||+||+.. +...-..+...+... ..|. .||+|++.........    
T Consensus        83 -----------------~~~-~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~  143 (227)
T PRK08903         83 -----------------LAF-DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLR  143 (227)
T ss_pred             -----------------HHH-hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHH
Confidence                             000 111 1234789999976 222223343333221 2333 4666766543222110    


Q ss_pred             -hcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          339 -MENGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       339 -~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                       .-.....++     ++|+  ++++-..++.+.
T Consensus       144 sr~~~~~~i~-----l~pl--~~~~~~~~l~~~  169 (227)
T PRK08903        144 TRLGWGLVYE-----LKPL--SDADKIAALKAA  169 (227)
T ss_pred             HHHhcCeEEE-----ecCC--CHHHHHHHHHHH
Confidence             002246778     9999  988766776664

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.04  E-value=8.5e-05  Score=72.87  Aligned_cols=150  Identities=9%  Similarity=0.040  Sum_probs=88.9

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc------ccccCeeE-EEEeCCCCCHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV------KFYFDCLA-WVRVSIAYDFGKMLDD  259 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------~~~F~~~~-wv~vs~~~~~~~i~~~  259 (394)
                      +++|.+...+.+.+.+..+. -.+.+.++|+.|+||||+|+.+.+....      ...|...+ -+......        
T Consensus        18 ~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~--------   88 (367)
T PRK14970         18 DVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNN--------   88 (367)
T ss_pred             hcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCC--------
Confidence            88999999999999887642 3457889999999999999998763111      01121111 11100000        


Q ss_pred             HHHHhCCCCCCccccCcCHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec-CChHH
Q 016120          260 IIKSVMPPSRVSVIIGEDYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITV-TDPDL  333 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTT-R~~~v  333 (394)
                                       ..++....+.+.    ..+++-++++|++.. +...++.+...+......+.+|++| ....+
T Consensus        89 -----------------~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl  151 (367)
T PRK14970         89 -----------------SVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI  151 (367)
T ss_pred             -----------------CHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence                             122222222111    124556899999977 4556777776665444455555554 33333


Q ss_pred             HhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          334 LASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      ...+  .+...+++     +.++  +.++....+.+.+
T Consensus       152 ~~~l--~sr~~~v~-----~~~~--~~~~l~~~l~~~~  180 (367)
T PRK14970        152 IPTI--LSRCQIFD-----FKRI--TIKDIKEHLAGIA  180 (367)
T ss_pred             CHHH--HhcceeEe-----cCCc--cHHHHHHHHHHHH
Confidence            3332  13345778     9999  9888888777653

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=98.03  E-value=1.3e-05  Score=78.25  Aligned_cols=169  Identities=12%  Similarity=0.050  Sum_probs=98.6

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc--cC--------------e--eEEEEeC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY--FD--------------C--LAWVRVS  248 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~--------------~--~~wv~vs  248 (394)
                      +++|.+.....+.+.+..+. -...+.++|+.|+||+|+|..+....--...  ..              |  +-|+..+
T Consensus        20 ~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~   98 (365)
T PRK07471         20 ALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAG   98 (365)
T ss_pred             hccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHcc
Confidence            89999999999998887652 3446789999999999999777542100000  00              0  0011111


Q ss_pred             CCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHHHc-----cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCC
Q 016120          249 IAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENG  321 (394)
Q Consensus       249 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~g  321 (394)
                      ..+|...+....    .....  ..-.. ..++..+ +.+.+     .+.+-++|+|++.. +....+.|...+..-..+
T Consensus        99 ~HPDl~~i~~~~----~~~~~--~~~~~I~VdqiR~-l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~  171 (365)
T PRK07471         99 AHGGLLTLERSW----NEKGK--RLRTVITVDEVRE-LISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR  171 (365)
T ss_pred             CCCCeEEEeccc----ccccc--cccccccHHHHHH-HHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence            111111000000    00000  00011 3344332 23332     24567899999998 777778888777665566


Q ss_pred             cEEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          322 SRVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       322 s~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      +.+|++|.++ .+....  .+....++     +.++  +.++..+++.+..+
T Consensus       172 ~~~IL~t~~~~~llpti--~SRc~~i~-----l~~l--~~~~i~~~L~~~~~  214 (365)
T PRK07471        172 SLFLLVSHAPARLLPTI--RSRCRKLR-----LRPL--APEDVIDALAAAGP  214 (365)
T ss_pred             eEEEEEECCchhchHHh--hccceEEE-----CCCC--CHHHHHHHHHHhcc
Confidence            7777777765 443333  34567788     9999  99999999987643

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.02  E-value=3.2e-05  Score=70.19  Aligned_cols=152  Identities=13%  Similarity=0.131  Sum_probs=85.9

Q ss_pred             cee-cccHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHhcCcccccccC--eeEEEEeCCCCCHHHHHHHHHHHh
Q 016120          189 NEF-ERGREELFDLLIEG-PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFD--CLAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       189 ~Gr-~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      +|- .+..-...+.+... +.....+-|+|..|+|||.|.+.+++  +......  .+++++      ..+....+...+
T Consensus        12 ~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~------~~~f~~~~~~~~   83 (219)
T PF00308_consen   12 VGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS------AEEFIREFADAL   83 (219)
T ss_dssp             -TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE------HHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec------HHHHHHHHHHHH
Confidence            453 33334444555443 33345678999999999999999998  4443222  345554      345555555554


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHH-HhhCCC-CCCCcEEEEecCCh---------
Q 016120          265 MPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDL-EELLPD-DENGSRVLITVTDP---------  331 (394)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l-~~~l~~-~~~gs~IivTTR~~---------  331 (394)
                      ...         ...    .+.+.+. .-=+|++||++.  ....|... ...+.. ...|.+||+|+...         
T Consensus        84 ~~~---------~~~----~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~  149 (219)
T PF00308_consen   84 RDG---------EIE----EFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP  149 (219)
T ss_dssp             HTT---------SHH----HHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred             Hcc---------cch----hhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence            332         222    2333333 234789999987  33334332 222211 13467899999543         


Q ss_pred             HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          332 DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       332 ~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ++...+   ...-+++     ++++  +.++...++.+.+.
T Consensus       150 ~L~SRl---~~Gl~~~-----l~~p--d~~~r~~il~~~a~  180 (219)
T PF00308_consen  150 DLRSRL---SWGLVVE-----LQPP--DDEDRRRILQKKAK  180 (219)
T ss_dssp             HHHHHH---HCSEEEE-----E------HHHHHHHHHHHHH
T ss_pred             hhhhhH---hhcchhh-----cCCC--CHHHHHHHHHHHHH
Confidence            233333   4567888     9999  99999999998854

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK05642 DNA replication initiation factor; Validated

Probab=98.01  E-value=7.3e-05  Score=68.59  Aligned_cols=122  Identities=16%  Similarity=0.219  Sum_probs=71.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY  288 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~  288 (394)
                      ...+.|+|..|+|||.|++.+++  +....-..++|++...      +...                  .    ..+.+.
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~~~------~~~~------------------~----~~~~~~   94 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPLAE------LLDR------------------G----PELLDN   94 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeHHH------HHhh------------------h----HHHHHh
Confidence            35678999999999999999987  3332223456665421      1110                  0    112222


Q ss_pred             ccCCeEEEEEeCCCC--CchhHHH-HHhhCCC-CCCCcEEEEecCChH---------HHhhchhcCCCceeeCCccCCCC
Q 016120          289 LTNKKYFIVLDDVFD--NSEIWSD-LEELLPD-DENGSRVLITVTDPD---------LLASLEMENGEKIRRDSVLFGGP  355 (394)
Q Consensus       289 l~~kr~LlVlDdv~~--~~~~~~~-l~~~l~~-~~~gs~IivTTR~~~---------v~~~~~~~~~~~~~~~~~~~l~~  355 (394)
                      +.+-. +||+||+..  ....|.. +...+.. ..+|..||+|++.+.         +...+   ....+++     +++
T Consensus        95 ~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl---~~gl~~~-----l~~  165 (234)
T PRK05642         95 LEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRL---TLALVFQ-----MRG  165 (234)
T ss_pred             hhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHH---hcCeeee-----cCC
Confidence            22222 688999975  2345543 3333321 234667888887532         11111   2346788     999


Q ss_pred             CCCChHHHHHHHHHHh
Q 016120          356 LIRLKHEAWQFFILHY  371 (394)
Q Consensus       356 L~~~~~~~~~Lf~~~~  371 (394)
                      +  +.++-...+++++
T Consensus       166 ~--~~e~~~~il~~ka  179 (234)
T PRK05642        166 L--SDEDKLRALQLRA  179 (234)
T ss_pred             C--CHHHHHHHHHHHH
Confidence            9  9999999998653

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.99  E-value=2.7e-05  Score=64.13  Aligned_cols=68  Identities=12%  Similarity=0.147  Sum_probs=40.5

Q ss_pred             EEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccC
Q 016120          212 VAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTN  291 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~  291 (394)
                      |.|+|++|+|||++|+.+++.  ...+   .+.++.+.-.+             ..      .......+...+.+.-..
T Consensus         1 ill~G~~G~GKT~l~~~la~~--l~~~---~~~i~~~~~~~-------------~~------~~~~~~~i~~~~~~~~~~   56 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY--LGFP---FIEIDGSELIS-------------SY------AGDSEQKIRDFFKKAKKS   56 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH--TTSE---EEEEETTHHHT-------------SS------TTHHHHHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhh--cccc---ccccccccccc-------------cc------cccccccccccccccccc
Confidence            568999999999999999984  3322   23343222110             00      011334444444443333


Q ss_pred             C-eEEEEEeCCCC
Q 016120          292 K-KYFIVLDDVFD  303 (394)
Q Consensus       292 k-r~LlVlDdv~~  303 (394)
                      . +.+|++||+..
T Consensus        57 ~~~~vl~iDe~d~   69 (132)
T PF00004_consen   57 AKPCVLFIDEIDK   69 (132)
T ss_dssp             STSEEEEEETGGG
T ss_pred             ccceeeeeccchh
Confidence            3 89999999987

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=97.96  E-value=0.00013  Score=70.91  Aligned_cols=170  Identities=11%  Similarity=0.035  Sum_probs=96.9

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc--ccCeeEEEEeCCCCCHHHHHHHHHHH-
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF--YFDCLAWVRVSIAYDFGKMLDDIIKS-  263 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~i~~~i~~~-  263 (394)
                      .++|-+.....+...+..+. ....+.|+|+.|+||||+|..+....--..  .+....   ...........+.+... 
T Consensus        24 ~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i~~~~   99 (351)
T PRK09112         24 RLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQIAQGA   99 (351)
T ss_pred             hccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHHHcCC
Confidence            89999999999999887653 345688999999999999988876311100  011100   00011111122222211 


Q ss_pred             ------hCCCCCCcc-c-cCc-CHHHHHHHHHHHc-----cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec
Q 016120          264 ------VMPPSRVSV-I-IGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITV  328 (394)
Q Consensus       264 ------l~~~~~~~~-~-~~~-~~~~~~~~l~~~l-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTT  328 (394)
                            +..+..... . -.. ..+++. .+.+++     .+++-++|+|++.. +....+.|...+-....++.+|++|
T Consensus       100 hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit  178 (351)
T PRK09112        100 HPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS  178 (351)
T ss_pred             CCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence                  100000000 0 011 344433 333333     34667899999998 6767777777765544455555544


Q ss_pred             CC-hHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          329 TD-PDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       329 R~-~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                      .+ ..+....  .+....++     +.|+  +.++...++.+.
T Consensus       179 ~~~~~llptI--rSRc~~i~-----l~pl--~~~~~~~~L~~~  212 (351)
T PRK09112        179 HSSGRLLPTI--RSRCQPIS-----LKPL--DDDELKKALSHL  212 (351)
T ss_pred             CChhhccHHH--HhhccEEE-----ecCC--CHHHHHHHHHHh
Confidence            44 3444444  24456888     9999  999999988874

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=97.95  E-value=6.2e-05  Score=75.64  Aligned_cols=134  Identities=13%  Similarity=0.104  Sum_probs=79.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCccccccc--CeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYF--DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR  286 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~  286 (394)
                      ..-+.|+|..|+|||+|++.+.+  .+....  ..+++++      ...+...+...+....           .....+.
T Consensus       141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-----------~~~~~~~  201 (450)
T PRK14087        141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS------GDEFARKAVDILQKTH-----------KEIEQFK  201 (450)
T ss_pred             cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-----------hHHHHHH
Confidence            34578999999999999999988  333222  2233443      3456666666553210           1122333


Q ss_pred             HHccCCeEEEEEeCCCC-C-chhH-HHHHhhCCC-CCCCcEEEEecCCh---------HHHhhchhcCCCceeeCCccCC
Q 016120          287 DYLTNKKYFIVLDDVFD-N-SEIW-SDLEELLPD-DENGSRVLITVTDP---------DLLASLEMENGEKIRRDSVLFG  353 (394)
Q Consensus       287 ~~l~~kr~LlVlDdv~~-~-~~~~-~~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~~~~~~~~~l  353 (394)
                      +.+. ..-+|||||+.. . ...+ +.+...+.. ...|..||+|+..+         .+...+   ...-+..     +
T Consensus       202 ~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~---~~Gl~~~-----L  272 (450)
T PRK14087        202 NEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRF---NMGLSIA-----I  272 (450)
T ss_pred             HHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHH---hCCceec-----c
Confidence            3333 234889999976 1 2222 333333321 13455688886643         222222   3456777     9


Q ss_pred             CCCCCChHHHHHHHHHHhC
Q 016120          354 GPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       354 ~~L~~~~~~~~~Lf~~~~~  372 (394)
                      +++  +.++-..++.+++.
T Consensus       273 ~~p--d~e~r~~iL~~~~~  289 (450)
T PRK14087        273 QKL--DNKTATAIIKKEIK  289 (450)
T ss_pred             CCc--CHHHHHHHHHHHHH
Confidence            999  99999999998854

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.93  E-value=0.00015  Score=67.74  Aligned_cols=158  Identities=9%  Similarity=0.018  Sum_probs=80.2

Q ss_pred             ccceecccHHHHHH---HHhc----------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCH
Q 016120          187 DINEFERGREELFD---LLIE----------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDF  253 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~---~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~  253 (394)
                      .++|.+..+++|.+   ++..          ..+....+.++|++|+||||+|+.+++...-...-....++.++..   
T Consensus         7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~---   83 (261)
T TIGR02881         7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA---   83 (261)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence            56787766665543   3311          0234556789999999999999999762100010011123333221   


Q ss_pred             HHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C--------chhHHHHHhhCCCCCCCcEE
Q 016120          254 GKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N--------SEIWSDLEELLPDDENGSRV  324 (394)
Q Consensus       254 ~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~--------~~~~~~l~~~l~~~~~gs~I  324 (394)
                       .+    ....-         ........+.+...   ...+|++|++.. .        .+..+.+...+........+
T Consensus        84 -~l----~~~~~---------g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~v  146 (261)
T TIGR02881        84 -DL----VGEYI---------GHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVL  146 (261)
T ss_pred             -Hh----hhhhc---------cchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEE
Confidence             11    11100         11122222222222   234889999975 1        12334454444443333455


Q ss_pred             EEecCChHHHh------hchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          325 LITVTDPDLLA------SLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       325 ivTTR~~~v~~------~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      |+++.......      .+. ......++     ++++  +.++-.+++.+.+.
T Consensus       147 ila~~~~~~~~~~~~~p~L~-sRf~~~i~-----f~~~--~~~el~~Il~~~~~  192 (261)
T TIGR02881       147 ILAGYSDEMDYFLSLNPGLR-SRFPISID-----FPDY--TVEELMEIAERMVK  192 (261)
T ss_pred             EecCCcchhHHHHhcChHHH-hccceEEE-----ECCC--CHHHHHHHHHHHHH
Confidence            55654433211      110 11134567     9999  99999999988754

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.93  E-value=0.00015  Score=74.68  Aligned_cols=168  Identities=8%  Similarity=-0.031  Sum_probs=91.4

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|-+..+..|.+.+..+ .-...+.++|+.|+||||+|+.+.+..........       ..++.-...+.|......
T Consensus        17 dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~hp   88 (624)
T PRK14959         17 EVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGMHV   88 (624)
T ss_pred             HhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCCCC
Confidence            8899888888888777654 23467778999999999999998863211100000       000000111111110000


Q ss_pred             CCCCccccCc-CHH---HHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hHHHhhchh
Q 016120          267 PSRVSVIIGE-DYQ---LKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD-PDLLASLEM  339 (394)
Q Consensus       267 ~~~~~~~~~~-~~~---~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~  339 (394)
                      .......... ..+   .+.+.+... ..+++-++|+|++.. +...++.|...+-.-.....+|++|.+ ..+...+  
T Consensus        89 Dv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI--  166 (624)
T PRK14959         89 DVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI--  166 (624)
T ss_pred             ceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH--
Confidence            0000000000 122   222222211 235667899999988 566677787777544445556665544 4554443  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .+....++     +.++  +.++....+.+.+
T Consensus       167 ~SRcq~i~-----F~pL--s~~eL~~~L~~il  191 (624)
T PRK14959        167 VSRCQHFT-----FTRL--SEAGLEAHLTKVL  191 (624)
T ss_pred             Hhhhhccc-----cCCC--CHHHHHHHHHHHH
Confidence            13345777     9999  9998887777653

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.91  E-value=0.00029  Score=71.37  Aligned_cols=153  Identities=9%  Similarity=-0.013  Sum_probs=90.5

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc--cc-----------------ccCeeEEEEe
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV--KF-----------------YFDCLAWVRV  247 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~~-----------------~F~~~~wv~v  247 (394)
                      +++|.+.....+.+++..+. -.....++|+.|+||||+|+.+.....-  ..                 .|...+++..
T Consensus        17 diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida   95 (486)
T PRK14953         17 EVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA   95 (486)
T ss_pred             HccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence            89999999999999887643 3445678999999999999988652110  00                 0111111211


Q ss_pred             CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEE
Q 016120          248 SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVL  325 (394)
Q Consensus       248 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Ii  325 (394)
                      +.+....                      +...+.+.+... ..+++-++|+|++.. +....+.+...+....+...+|
T Consensus        96 as~~gvd----------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~I  153 (486)
T PRK14953         96 ASNRGID----------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFI  153 (486)
T ss_pred             ccCCCHH----------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence            1110000                      122222222221 135677999999987 4556677777776555555555


Q ss_pred             Eec-CChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          326 ITV-TDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       326 vTT-R~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      ++| +...+....  .+....++     +.++  +.++....+.+.+
T Consensus       154 l~tt~~~kl~~tI--~SRc~~i~-----f~~l--s~~el~~~L~~i~  191 (486)
T PRK14953        154 LCTTEYDKIPPTI--LSRCQRFI-----FSKP--TKEQIKEYLKRIC  191 (486)
T ss_pred             EEECCHHHHHHHH--HHhceEEE-----cCCC--CHHHHHHHHHHHH
Confidence            544 444444333  13345778     9999  9888877777653

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.90  E-value=0.00016  Score=75.52  Aligned_cols=165  Identities=20%  Similarity=0.188  Sum_probs=105.4

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC-CCCHHHHHHHHHHHhCCCCCCc---
Q 016120          196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI-AYDFGKMLDDIIKSVMPPSRVS---  271 (394)
Q Consensus       196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~---  271 (394)
                      .++.+.|... .+.+.+.|..++|.|||||+-....  .. ..=..+.|.+..+ +-++...+..++..++...+..   
T Consensus        25 ~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~  100 (894)
T COG2909          25 PRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE  100 (894)
T ss_pred             HHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence            3455556544 3688999999999999999988864  11 1234578998876 4468888888888887543321   


Q ss_pred             -----cccCc-CHHHHHHHHHHHcc--CCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcC
Q 016120          272 -----VIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMEN  341 (394)
Q Consensus       272 -----~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~  341 (394)
                           +.... +...+...+..-+.  .+++.+||||..-  ++..-..+...+...+.+-..++|||+..-....    
T Consensus       101 a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la----  176 (894)
T COG2909         101 AQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA----  176 (894)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc----
Confidence                 01111 34445555555443  3689999999765  3544455666666667788999999986322222    


Q ss_pred             CCceeeCCccCCC----CCCCChHHHHHHHHHHh
Q 016120          342 GEKIRRDSVLFGG----PLIRLKHEAWQFFILHY  371 (394)
Q Consensus       342 ~~~~~~~~~~~l~----~L~~~~~~~~~Lf~~~~  371 (394)
                       .-.+++..|+++    .+  +.+|+-.+|...-
T Consensus       177 -~lRlr~~llEi~~~~Lrf--~~eE~~~fl~~~~  207 (894)
T COG2909         177 -RLRLRDELLEIGSEELRF--DTEEAAAFLNDRG  207 (894)
T ss_pred             -ceeehhhHHhcChHhhcC--ChHHHHHHHHHcC
Confidence             111222222232    35  7899999887753

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.90  E-value=0.0002  Score=74.55  Aligned_cols=149  Identities=8%  Similarity=0.027  Sum_probs=95.0

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcc---------------------cccccCeeEEE
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDH---------------------VKFYFDCLAWV  245 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---------------------~~~~F~~~~wv  245 (394)
                      +++|.+...+.|..++..+. -...+.++|+.|+||||+|+.+.....                     ...+|+. ..+
T Consensus        18 ~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l   95 (614)
T PRK14971         18 SVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL   95 (614)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence            89999999999999987642 345678999999999999988765211                     0112322 112


Q ss_pred             EeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCC
Q 016120          246 RVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDEN  320 (394)
Q Consensus       246 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~  320 (394)
                      ..+...                         ..+++...+.+.    ..+++=++|+|++.. +...++.|...+..-..
T Consensus        96 d~~~~~-------------------------~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~  150 (614)
T PRK14971         96 DAASNN-------------------------SVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPS  150 (614)
T ss_pred             cccccC-------------------------CHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCC
Confidence            111111                         222222222211    124556889999988 66778888888876656


Q ss_pred             CcEEEE-ecCChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          321 GSRVLI-TVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       321 gs~Iiv-TTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      ++.+|+ ||....+...+  .+...+++     +.++  +.++....+.+.+
T Consensus       151 ~tifIL~tt~~~kIl~tI--~SRc~iv~-----f~~l--s~~ei~~~L~~ia  193 (614)
T PRK14971        151 YAIFILATTEKHKILPTI--LSRCQIFD-----FNRI--QVADIVNHLQYVA  193 (614)
T ss_pred             CeEEEEEeCCchhchHHH--Hhhhheee-----cCCC--CHHHHHHHHHHHH
Confidence            666555 54555555544  24567788     9999  9988888777654

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.90  E-value=9.7e-05  Score=60.66  Aligned_cols=86  Identities=10%  Similarity=-0.003  Sum_probs=47.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHc
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL  289 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l  289 (394)
                      ..+.|+|++|+||||+++.+++.  ........+++..+........... ........     ...........+.+..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~   74 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK-----ASGSGELRLRLALALA   74 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhccC-----CCCCHHHHHHHHHHHH
Confidence            57889999999999999999883  3333233455544443322111111 00111110     1113333334444444


Q ss_pred             cCC-eEEEEEeCCCC
Q 016120          290 TNK-KYFIVLDDVFD  303 (394)
Q Consensus       290 ~~k-r~LlVlDdv~~  303 (394)
                      ... ..++++|++..
T Consensus        75 ~~~~~~viiiDei~~   89 (148)
T smart00382       75 RKLKPDVLILDEITS   89 (148)
T ss_pred             HhcCCCEEEEECCcc
Confidence            443 49999999998

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=97.89  E-value=0.00015  Score=72.17  Aligned_cols=136  Identities=15%  Similarity=0.119  Sum_probs=75.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCccccccc--CeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYF--DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR  286 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~  286 (394)
                      ...+.|+|..|+|||+|++.+++  +.....  ..+++++.      ..+...+...+...         ......    
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~---------~~~~~~----  194 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVSS------EKFTNDFVNALRNN---------KMEEFK----  194 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC---------CHHHHH----
Confidence            34678999999999999999998  443332  23455542      34444555544321         222222    


Q ss_pred             HHccCCeEEEEEeCCCC--CchhH-HHHHhhCCCC-CCCcEEEEecCC-hHHHhhc----hh-cCCCceeeCCccCCCCC
Q 016120          287 DYLTNKKYFIVLDDVFD--NSEIW-SDLEELLPDD-ENGSRVLITVTD-PDLLASL----EM-ENGEKIRRDSVLFGGPL  356 (394)
Q Consensus       287 ~~l~~kr~LlVlDdv~~--~~~~~-~~l~~~l~~~-~~gs~IivTTR~-~~v~~~~----~~-~~~~~~~~~~~~~l~~L  356 (394)
                      +.+++ .-+|||||+..  ....+ +.+...+... .+|..+|+||.. +.-...+    .+ -....++.     +++.
T Consensus       195 ~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~-----i~~p  268 (405)
T TIGR00362       195 EKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVD-----IEPP  268 (405)
T ss_pred             HHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEE-----eCCC
Confidence            22222 23899999986  12122 2233222211 234567777764 2221111    00 02234677     9999


Q ss_pred             CCChHHHHHHHHHHhCC
Q 016120          357 IRLKHEAWQFFILHYGS  373 (394)
Q Consensus       357 ~~~~~~~~~Lf~~~~~~  373 (394)
                        +.++-..++.+.+..
T Consensus       269 --d~~~r~~il~~~~~~  283 (405)
T TIGR00362       269 --DLETRLAILQKKAEE  283 (405)
T ss_pred             --CHHHHHHHHHHHHHH
Confidence              999999999888643

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.88  E-value=0.0003  Score=69.67  Aligned_cols=118  Identities=19%  Similarity=0.119  Sum_probs=77.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHcc
Q 016120          211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLT  290 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~  290 (394)
                      ++.|.|+.++||||+++.+...  ..+.   .++++..+......                     ...+....+.+.-.
T Consensus        39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~---------------------~l~d~~~~~~~~~~   92 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRI---------------------ELLDLLRAYIELKE   92 (398)
T ss_pred             EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchh---------------------hHHHHHHHHHHhhc
Confidence            9999999999999999777662  2222   45554322111000                     11111111222212


Q ss_pred             CCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChH-----HHhhchhcCCCceeeCCccCCCCCCCChHHHHH
Q 016120          291 NKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPD-----LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQ  365 (394)
Q Consensus       291 ~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~-----v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~  365 (394)
                      .++.+++||.|.. ...|......+.+..+. +|++|+-+..     .++..  .+....++     +-||  +-.|...
T Consensus        93 ~~~~yifLDEIq~-v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L--~GR~~~~~-----l~Pl--SF~Efl~  161 (398)
T COG1373          93 REKSYIFLDEIQN-VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESL--AGRGKDLE-----LYPL--SFREFLK  161 (398)
T ss_pred             cCCceEEEecccC-chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhc--CCCceeEE-----ECCC--CHHHHHh
Confidence            2778999999999 88899888888877766 8999888753     44444  34566777     9999  9988865

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.87  E-value=6.6e-05  Score=67.34  Aligned_cols=145  Identities=15%  Similarity=0.072  Sum_probs=76.5

Q ss_pred             ccceecccHHHHHHHHh---cCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLI---EGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      +|+|.+..++++.-.+.   ..+.....+.+||++|+||||||..+.+  +...+|.   +++.+ ...           
T Consensus        25 efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~-~i~-----------   87 (233)
T PF05496_consen   25 EFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGP-AIE-----------   87 (233)
T ss_dssp             CS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECC-C-------------
T ss_pred             HccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccch-hhh-----------
Confidence            99999998888655443   2334577888999999999999999999  5555552   22221 111           


Q ss_pred             hCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCC--------C-----------CCcE
Q 016120          264 VMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDD--------E-----------NGSR  323 (394)
Q Consensus       264 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~--------~-----------~gs~  323 (394)
                                   ...++...+.. ++ ++-+|.+|.+.. +...-+.|..+.-++        +           +-+-
T Consensus        88 -------------k~~dl~~il~~-l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl  152 (233)
T PF05496_consen   88 -------------KAGDLAAILTN-LK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL  152 (233)
T ss_dssp             -------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred             -------------hHHHHHHHHHh-cC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence                         11222222222 22 344677798887 554444444332211        1           1234


Q ss_pred             EEEecCChHHHhhchhcCC-CceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          324 VLITVTDPDLLASLEMENG-EKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       324 IivTTR~~~v~~~~~~~~~-~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      |=-|||.-.+...+  ... .-+.+     |+..  +.+|-.++..+.++
T Consensus       153 igATTr~g~ls~pL--rdRFgi~~~-----l~~Y--~~~el~~Iv~r~a~  193 (233)
T PF05496_consen  153 IGATTRAGLLSSPL--RDRFGIVLR-----LEFY--SEEELAKIVKRSAR  193 (233)
T ss_dssp             EEEESSGCCTSHCC--CTTSSEEEE-----------THHHHHHHHHHCCH
T ss_pred             eeeeccccccchhH--Hhhcceecc-----hhcC--CHHHHHHHHHHHHH
Confidence            45588876555544  222 33457     8888  99998888887643

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.87  E-value=0.0002  Score=70.67  Aligned_cols=158  Identities=15%  Similarity=0.154  Sum_probs=88.4

Q ss_pred             ccceecccHHHHHHHHhcC----------C-CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIEG----------P-SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~----------~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|.+..+++|.+.+...          + ...+-+.++|++|+|||+||+.+++  ....+|   +.+.  .    ..
T Consensus       146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~--~l~~~f---i~i~--~----s~  214 (398)
T PTZ00454        146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH--HTTATF---IRVV--G----SE  214 (398)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE---EEEe--h----HH
Confidence            8999998888887766421          0 2356788999999999999999998  333333   1221  1    11


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--C----------ch---hHHHHHhhCCC--C
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--N----------SE---IWSDLEELLPD--D  318 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~----------~~---~~~~l~~~l~~--~  318 (394)
                      +    .....+.         ....+...+.......+.+|+||++..  .          ..   .+..+...+..  .
T Consensus       215 l----~~k~~ge---------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~  281 (398)
T PTZ00454        215 F----VQKYLGE---------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ  281 (398)
T ss_pred             H----HHHhcch---------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence            1    1111110         222233333333356789999999764  0          00   11222222221  2


Q ss_pred             CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120          319 ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP  375 (394)
Q Consensus       319 ~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~  375 (394)
                      ..+..||.||..++.....-..  .-...+.     +++.  +.++...+|+.+....+
T Consensus       282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~-----~~~P--~~~~R~~Il~~~~~~~~  333 (398)
T PTZ00454        282 TTNVKVIMATNRADTLDPALLRPGRLDRKIE-----FPLP--DRRQKRLIFQTITSKMN  333 (398)
T ss_pred             CCCEEEEEecCCchhCCHHHcCCCcccEEEE-----eCCc--CHHHHHHHHHHHHhcCC
Confidence            2356788888766433221001  1245567     8888  88888888877654333

>PRK08116 hypothetical protein; Validated

Probab=97.86  E-value=0.0001  Score=69.03  Aligned_cols=103  Identities=19%  Similarity=0.252  Sum_probs=58.8

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHc
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL  289 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l  289 (394)
                      .-+.++|..|+|||.||..+++  ....+-..+++++      ...++..+.........      .+...    +.+.+
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~------~~~~~----~~~~l  176 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTYKSSGK------EDENE----IIRSL  176 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhcccc------ccHHH----HHHHh
Confidence            3577999999999999999999  4433333455664      34455555554432211      02222    22334


Q ss_pred             cCCeEEEEEeCCCC-CchhHHH--HHhhCCC-CCCCcEEEEecCCh
Q 016120          290 TNKKYFIVLDDVFD-NSEIWSD--LEELLPD-DENGSRVLITVTDP  331 (394)
Q Consensus       290 ~~kr~LlVlDdv~~-~~~~~~~--l~~~l~~-~~~gs~IivTTR~~  331 (394)
                      .+-. ||||||+.. ....|..  +...+.. -.+|..+|+||...
T Consensus       177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~  221 (268)
T PRK08116        177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS  221 (268)
T ss_pred             cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            4333 899999954 2344533  3332221 13456688888754

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=97.84  E-value=0.00041  Score=70.65  Aligned_cols=150  Identities=12%  Similarity=0.036  Sum_probs=93.2

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc---cccc-----------------ccCeeEEEE
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND---HVKF-----------------YFDCLAWVR  246 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~-----------------~F~~~~wv~  246 (394)
                      +++|-+...+.+...+..+. -.....++|+.|+||||+|+.+.+..   .-.+                 |++ .+.+.
T Consensus        15 eiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~eld   92 (535)
T PRK08451         15 ELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIEMD   92 (535)
T ss_pred             HccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEEec
Confidence            89999998999988886653 34466799999999999999776521   0000                 111 11111


Q ss_pred             eCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH--c--cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCC
Q 016120          247 VSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY--L--TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENG  321 (394)
Q Consensus       247 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~--l--~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~g  321 (394)
                      .+.+.                         ..+++.+.+...  .  .+++-++|+|++.. +.+..+.|...+-.-...
T Consensus        93 aas~~-------------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~  147 (535)
T PRK08451         93 AASNR-------------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY  147 (535)
T ss_pred             ccccc-------------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence            11111                         233333333221  1  24566899999988 666777777777655566


Q ss_pred             cEEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          322 SRVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       322 s~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      +++|++|.++ .+....  .+....++     +.++  +.++....+.+.+.
T Consensus       148 t~FIL~ttd~~kL~~tI--~SRc~~~~-----F~~L--s~~ei~~~L~~Il~  190 (535)
T PRK08451        148 VKFILATTDPLKLPATI--LSRTQHFR-----FKQI--PQNSIISHLKTILE  190 (535)
T ss_pred             eEEEEEECChhhCchHH--HhhceeEE-----cCCC--CHHHHHHHHHHHHH
Confidence            7777666553 333333  23456788     9999  99888887776543

>TIGR03689 pup_AAA proteasome ATPase

Probab=97.83  E-value=0.00023  Score=72.12  Aligned_cols=163  Identities=13%  Similarity=0.063  Sum_probs=90.0

Q ss_pred             ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccc-----cCeeEEEEeCCC
Q 016120          187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY-----FDCLAWVRVSIA  250 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-----F~~~~wv~vs~~  250 (394)
                      ++.|.+..+++|.+.+...           -...+-+.++|++|+|||++|+.+++  ....+     .....++++...
T Consensus       183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~--eL~~~i~~~~~~~~~fl~v~~~  260 (512)
T TIGR03689       183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVAN--SLAQRIGAETGDKSYFLNIKGP  260 (512)
T ss_pred             HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHH--hhccccccccCCceeEEeccch
Confidence            7888999999998876421           12345678999999999999999998  33332     123344444321


Q ss_pred             CCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC---C-----chh-----HHHHHhhCC
Q 016120          251 YDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD---N-----SEI-----WSDLEELLP  316 (394)
Q Consensus       251 ~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~---~-----~~~-----~~~l~~~l~  316 (394)
                              +++....+..      ......+.+..++.. .+++++|+||+++.   .     ...     ...+...+.
T Consensus       261 --------eLl~kyvGet------e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD  326 (512)
T TIGR03689       261 --------ELLNKYVGET------ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD  326 (512)
T ss_pred             --------hhcccccchH------HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence                    1111110000      001222222333222 35789999999975   0     111     223333332


Q ss_pred             CC--CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          317 DD--ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       317 ~~--~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ..  ..+..||.||..++.....=..  .-...++     +++.  +.++..++|.+++.
T Consensus       327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~-----~~~P--d~e~r~~Il~~~l~  379 (512)
T TIGR03689       327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIR-----IERP--DAEAAADIFSKYLT  379 (512)
T ss_pred             ccccCCceEEEeccCChhhCCHhhcCccccceEEE-----eCCC--CHHHHHHHHHHHhh
Confidence            21  1334455566554332211001  1244577     9999  99999999999865

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.83  E-value=0.00024  Score=71.63  Aligned_cols=132  Identities=13%  Similarity=0.099  Sum_probs=76.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccC--eeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFD--CLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR  286 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~  286 (394)
                      ...+.|+|.+|+|||+|++.+.+  +....+.  .+++++.      ..+...+...+...         .....    .
T Consensus       148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~---------~~~~~----~  206 (450)
T PRK00149        148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTS------EKFTNDFVNALRNN---------TMEEF----K  206 (450)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC---------cHHHH----H
Confidence            45678999999999999999998  4544432  3445543      33344444444221         22222    2


Q ss_pred             HHccCCeEEEEEeCCCC-C-chhH-HHHHhhCCC-CCCCcEEEEecCCh-H-H-------HhhchhcCCCceeeCCccCC
Q 016120          287 DYLTNKKYFIVLDDVFD-N-SEIW-SDLEELLPD-DENGSRVLITVTDP-D-L-------LASLEMENGEKIRRDSVLFG  353 (394)
Q Consensus       287 ~~l~~kr~LlVlDdv~~-~-~~~~-~~l~~~l~~-~~~gs~IivTTR~~-~-v-------~~~~~~~~~~~~~~~~~~~l  353 (394)
                      +.++ +.-+|||||+.. . ...+ +.+...+.. ..+|..||+||..+ . +       ...+   ....+++     +
T Consensus       207 ~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl---~~gl~v~-----i  277 (450)
T PRK00149        207 EKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRF---EWGLTVD-----I  277 (450)
T ss_pred             HHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHh---cCCeeEE-----e
Confidence            2333 234899999976 1 2111 233322211 12345577777653 1 1       2222   2345788     9


Q ss_pred             CCCCCChHHHHHHHHHHhC
Q 016120          354 GPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       354 ~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ++.  +.++-..++.+.+.
T Consensus       278 ~~p--d~~~r~~il~~~~~  294 (450)
T PRK00149        278 EPP--DLETRIAILKKKAE  294 (450)
T ss_pred             cCC--CHHHHHHHHHHHHH
Confidence            999  99999999998854

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.83  E-value=0.00013  Score=77.81  Aligned_cols=153  Identities=12%  Similarity=0.109  Sum_probs=84.9

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc---cccccc-CeeEEEEeCCCCCHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND---HVKFYF-DCLAWVRVSIAYDFGKMLDDIIK  262 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~  262 (394)
                      .++||+++++++++.|....  ..-+.++|++|+|||++|+.+++.-   .+...+ .+.+|..     +...+    +.
T Consensus       183 ~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l----~a  251 (731)
T TIGR02639       183 PLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSL----LA  251 (731)
T ss_pred             cccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHH----hh
Confidence            78999999999998887653  3345689999999999999998731   111112 3444431     11111    11


Q ss_pred             HhCCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC-C---------chhHHHHHhhCCCCCCCc-EEEEecCC
Q 016120          263 SVMPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-N---------SEIWSDLEELLPDDENGS-RVLITVTD  330 (394)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~-~---------~~~~~~l~~~l~~~~~gs-~IivTTR~  330 (394)
                      .   ..     +..+.+.....+.+.+ ..++.+|++|++.. .         .+.-+.+...+.   +|. ++|-+|..
T Consensus       252 ~---~~-----~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~  320 (731)
T TIGR02639       252 G---TK-----YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTY  320 (731)
T ss_pred             h---cc-----ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCH
Confidence            0   00     0002233333333333 34688999999974 1         111223333332   333 34444433


Q ss_pred             hHH------HhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          331 PDL------LASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       331 ~~v------~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                      +..      -..+  ...-..++     ++++  +.++...+++..
T Consensus       321 ~e~~~~~~~d~al--~rRf~~i~-----v~~p--~~~~~~~il~~~  357 (731)
T TIGR02639       321 EEYKNHFEKDRAL--SRRFQKID-----VGEP--SIEETVKILKGL  357 (731)
T ss_pred             HHHHHHhhhhHHH--HHhCceEE-----eCCC--CHHHHHHHHHHH
Confidence            221      1111  12234678     9999  999999999864

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=97.82  E-value=0.001  Score=71.24  Aligned_cols=160  Identities=14%  Similarity=0.092  Sum_probs=89.8

Q ss_pred             ccceecccHHHHHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG----PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIK  262 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~  262 (394)
                      +.+|.+..+++|+++|...    ...-.++.++|++|+||||+|+.+..  .....|-.   ++.+...+...+...-..
T Consensus       323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~~~---i~~~~~~d~~~i~g~~~~  397 (784)
T PRK10787        323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKYVR---MALGGVRDEAEIRGHRRT  397 (784)
T ss_pred             hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCEEE---EEcCCCCCHHHhccchhc
Confidence            6899999999999888632    22345789999999999999999987  33333321   233333333222111100


Q ss_pred             HhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cchh----HHHHHhhCCCC---------------CCCc
Q 016120          263 SVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEI----WSDLEELLPDD---------------ENGS  322 (394)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~----~~~l~~~l~~~---------------~~gs  322 (394)
                      ..+.          ....+.+.+...- ...-+++||.+.. +...    .+.+...+...               -.+.
T Consensus       398 ~~g~----------~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v  466 (784)
T PRK10787        398 YIGS----------MPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV  466 (784)
T ss_pred             cCCC----------CCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence            1111          1223333333322 2345788999976 2211    23444433211               1233


Q ss_pred             EEEEecCChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          323 RVLITVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       323 ~IivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      -+|.|+.+..+...+  .+...+++     +.++  +.++-..+.++++
T Consensus       467 ~~i~TaN~~~i~~aL--l~R~~ii~-----~~~~--t~eek~~Ia~~~L  506 (784)
T PRK10787        467 MFVATSNSMNIPAPL--LDRMEVIR-----LSGY--TEDEKLNIAKRHL  506 (784)
T ss_pred             EEEEcCCCCCCCHHH--hcceeeee-----cCCC--CHHHHHHHHHHhh
Confidence            344455444433333  34456788     9999  9999888887764

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.82  E-value=0.00018  Score=74.84  Aligned_cols=170  Identities=9%  Similarity=-0.039  Sum_probs=93.9

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+...........      -...++.-.....|......
T Consensus        17 eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~~~   89 (585)
T PRK14950         17 ELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGSAV   89 (585)
T ss_pred             HhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCCCC
Confidence            89999999999988887643 234567899999999999999976311100000      00011111222222221111


Q ss_pred             CCCCccccCc-CHHHHHH---HHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hHHHhhchh
Q 016120          267 PSRVSVIIGE-DYQLKKS---ILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD-PDLLASLEM  339 (394)
Q Consensus       267 ~~~~~~~~~~-~~~~~~~---~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~  339 (394)
                      .......... ..+++.+   .+... ..+++-++|+|++.. +....+.|...+-.....+.+|++|.+ ..+...+  
T Consensus        90 d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI--  167 (585)
T PRK14950         90 DVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI--  167 (585)
T ss_pred             eEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH--
Confidence            0000000011 2233322   22211 124567899999987 456677787777655556666665543 3443333  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      .+....+.     +.++  +.++....+.+.+.
T Consensus       168 ~SR~~~i~-----f~~l--~~~el~~~L~~~a~  193 (585)
T PRK14950        168 LSRCQRFD-----FHRH--SVADMAAHLRKIAA  193 (585)
T ss_pred             Hhccceee-----CCCC--CHHHHHHHHHHHHH
Confidence            13345677     8888  88887777766543

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.81  E-value=0.00023  Score=76.01  Aligned_cols=162  Identities=11%  Similarity=0.113  Sum_probs=93.3

Q ss_pred             ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD  259 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~  259 (394)
                      .++|.+..++.+.+.+...       +....++.++|+.|+|||+||+.+..  ...   ...+.++.+.-....    .
T Consensus       455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l~---~~~~~~d~se~~~~~----~  525 (731)
T TIGR02639       455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE--ALG---VHLERFDMSEYMEKH----T  525 (731)
T ss_pred             ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH--Hhc---CCeEEEeCchhhhcc----c
Confidence            6788888888888887632       12345788999999999999999987  332   223455544422111    1


Q ss_pred             HHHHhCCCCCCccccCc-CHHHHHHHHHHHccC-CeEEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEE
Q 016120          260 IIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTN-KKYFIVLDDVFD-NSEIWSDLEELLPDD-----------ENGSRVL  325 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~-kr~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~Ii  325 (394)
                      +...++.+..   ..+. ....+    .+.++. ...+++||+++. +++.++.|...+..+           -..+-||
T Consensus       526 ~~~lig~~~g---yvg~~~~~~l----~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii  598 (731)
T TIGR02639       526 VSRLIGAPPG---YVGFEQGGLL----TEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILI  598 (731)
T ss_pred             HHHHhcCCCC---CcccchhhHH----HHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEE
Confidence            1222222211   0111 22223    333333 346999999998 677777777766543           1234466


Q ss_pred             EecCCh--HHH--------------------hhch---hcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          326 ITVTDP--DLL--------------------ASLE---MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       326 vTTR~~--~v~--------------------~~~~---~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      +||..-  .+.                    ....   .+.-+.++.     ++||  +.++-..++.+..
T Consensus       599 ~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~-----F~pL--s~e~l~~Iv~~~L  662 (731)
T TIGR02639       599 MTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIH-----FNPL--SEEVLEKIVQKFV  662 (731)
T ss_pred             ECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEE-----cCCC--CHHHHHHHHHHHH
Confidence            676321  111                    0010   011245677     9999  9999888887654

>TIGR00763 lon ATP-dependent protease La

Probab=97.77  E-value=0.0017  Score=69.83  Aligned_cols=45  Identities=13%  Similarity=0.236  Sum_probs=36.6

Q ss_pred             ccceecccHHHHHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEG----PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|.+..++.|.+++...    ..+..++.++|++|+|||++|+.+.+
T Consensus       321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~  369 (775)
T TIGR00763       321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK  369 (775)
T ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            6889999999988876422    22345788999999999999999998

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=97.76  E-value=0.00045  Score=72.43  Aligned_cols=162  Identities=12%  Similarity=0.048  Sum_probs=92.1

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc---c-CeeEE-EEeCCCCCHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY---F-DCLAW-VRVSIAYDFGKMLDDII  261 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F-~~~~w-v~vs~~~~~~~i~~~i~  261 (394)
                      +++|.+..+..+..++..+. -.....++|+.|+||||+|+.+....--...   + .|..- -+....++...      
T Consensus        19 dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie------   91 (725)
T PRK07133         19 DIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE------   91 (725)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE------
Confidence            89999999999999887642 3456678999999999999988752100000   0 00000 00000111000      


Q ss_pred             HHhCCCCCCccccCc-CHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhc
Q 016120          262 KSVMPPSRVSVIIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASL  337 (394)
Q Consensus       262 ~~l~~~~~~~~~~~~-~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~  337 (394)
                        +.+..    .... +...+.+.+... ..+++-++|+|++.. ....+..|...+-.....+.+|+ |+....+....
T Consensus        92 --idaas----n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI  165 (725)
T PRK07133         92 --MDAAS----NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTI  165 (725)
T ss_pred             --Eeccc----cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHH
Confidence              00000    0011 223333333222 235667899999987 56677888777765444555454 55555555443


Q ss_pred             hhcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          338 EMENGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       338 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                        .+....++     +.++  +.++....+...
T Consensus       166 --~SRcq~ie-----F~~L--~~eeI~~~L~~i  189 (725)
T PRK07133        166 --LSRVQRFN-----FRRI--SEDEIVSRLEFI  189 (725)
T ss_pred             --HhhceeEE-----ccCC--CHHHHHHHHHHH
Confidence              23456788     9999  998887777664

>PRK08181 transposase; Validated

Probab=97.75  E-value=7.9e-05  Score=69.57  Aligned_cols=99  Identities=19%  Similarity=0.164  Sum_probs=54.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHc
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL  289 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l  289 (394)
                      .-+.++|++|+|||.||..+.+  ........++|+++      .+++..+.......         +.......+    
T Consensus       107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~~------~~L~~~l~~a~~~~---------~~~~~l~~l----  165 (269)
T PRK08181        107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTRT------TDLVQKLQVARREL---------QLESAIAKL----  165 (269)
T ss_pred             ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeeeH------HHHHHHHHHHHhCC---------cHHHHHHHH----
Confidence            3478999999999999999987  33333334455543      44555543321110         222222222    


Q ss_pred             cCCeEEEEEeCCCC-CchhH--HHHHhhCCCC-CCCcEEEEecCCh
Q 016120          290 TNKKYFIVLDDVFD-NSEIW--SDLEELLPDD-ENGSRVLITVTDP  331 (394)
Q Consensus       290 ~~kr~LlVlDdv~~-~~~~~--~~l~~~l~~~-~~gs~IivTTR~~  331 (394)
                       .+.=||||||+.. ....|  ..+...+... .++ .+||||..+
T Consensus       166 -~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~~  209 (269)
T PRK08181        166 -DKFDLLILDDLAYVTKDQAETSVLFELISARYERR-SILITANQP  209 (269)
T ss_pred             -hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEcCCC
Confidence             1345999999975 22222  2233333221 223 488888764

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.75  E-value=0.00019  Score=67.24  Aligned_cols=175  Identities=11%  Similarity=0.072  Sum_probs=101.8

Q ss_pred             cHHHHHHHHhcCC-CCceEEEEEcCCCccHHHHHHHHhcCcccc----cccCeeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 016120          194 GREELFDLLIEGP-SGLAVVAILDSSGFDKTVFTADTYNNDHVK----FYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPS  268 (394)
Q Consensus       194 ~~~~i~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~  268 (394)
                      .++++.++|.... .+.+-+.|||.+|.|||++++.+....-..    ..--.++.|.+...++...++..|+..++.+.
T Consensus        45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~  124 (302)
T PF05621_consen   45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY  124 (302)
T ss_pred             HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence            4455555554442 345678999999999999999998531111    01115677888899999999999999999986


Q ss_pred             CCccccCc-CHHHHHHHHHHHccC-CeEEEEEeCCCC----CchhHHHHH---hhCCCCCCCcEEEEecCChHHHhhch-
Q 016120          269 RVSVIIGE-DYQLKKSILRDYLTN-KKYFIVLDDVFD----NSEIWSDLE---ELLPDDENGSRVLITVTDPDLLASLE-  338 (394)
Q Consensus       269 ~~~~~~~~-~~~~~~~~l~~~l~~-kr~LlVlDdv~~----~~~~~~~l~---~~l~~~~~gs~IivTTR~~~v~~~~~-  338 (394)
                      .     .. +...+.......++. +--+||+|++.+    +...-..+.   ..|.+.-+=+-|.+-|+.-.-+-... 
T Consensus       125 ~-----~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~  199 (302)
T PF05621_consen  125 R-----PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP  199 (302)
T ss_pred             C-----CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH
Confidence            5     22 555555566666643 566899999987    222222222   23322223345666555421111110 


Q ss_pred             -hcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCCCCCC
Q 016120          339 -MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLENY  379 (394)
Q Consensus       339 -~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~~~~~  379 (394)
                       ..+...++.     |++- +.+++...|+...-...|....
T Consensus       200 QLa~RF~~~~-----Lp~W-~~d~ef~~LL~s~e~~LPLr~~  235 (302)
T PF05621_consen  200 QLASRFEPFE-----LPRW-ELDEEFRRLLASFERALPLRKP  235 (302)
T ss_pred             HHHhccCCcc-----CCCC-CCCcHHHHHHHHHHHhCCCCCC
Confidence             012234555     6655 2456666666554334444433

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.74  E-value=0.00019  Score=77.57  Aligned_cols=155  Identities=15%  Similarity=0.136  Sum_probs=83.9

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc---cccccc-CeeEEEEeCCCCCHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND---HVKFYF-DCLAWVRVSIAYDFGKMLDDIIK  262 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~  262 (394)
                      .++||+++++++++.|....  ..-+.++|++|+|||++|+.++...   .+.... ...+|. +    +...+      
T Consensus       180 ~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l------  246 (821)
T CHL00095        180 PVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL------  246 (821)
T ss_pred             CCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH------
Confidence            68999999999999997653  2344689999999999999987731   111111 244553 1    22111      


Q ss_pred             HhCCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC--C------chhH-HHHHhhCCCCCCCcEEEEecCChH
Q 016120          263 SVMPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD--N------SEIW-SDLEELLPDDENGSRVLITVTDPD  332 (394)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~--~------~~~~-~~l~~~l~~~~~gs~IivTTR~~~  332 (394)
                       +.+..     +..+.+.....+.+.+ ..++.+|++|++..  .      .... +-|...+..+.  -++|-+|..+.
T Consensus       247 -~ag~~-----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~--l~~IgaTt~~e  318 (821)
T CHL00095        247 -LAGTK-----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGE--LQCIGATTLDE  318 (821)
T ss_pred             -hccCC-----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCC--cEEEEeCCHHH
Confidence             11111     1112333333333322 35689999999964  0      1112 22333332222  34455554443


Q ss_pred             HHhhc----hhcCCCceeeCCccCCCCCCCChHHHHHHHHH
Q 016120          333 LLASL----EMENGEKIRRDSVLFGGPLIRLKHEAWQFFIL  369 (394)
Q Consensus       333 v~~~~----~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~  369 (394)
                      .....    +......++.     ++..  +.++...+++.
T Consensus       319 y~~~ie~D~aL~rRf~~I~-----v~ep--~~~e~~aILr~  352 (821)
T CHL00095        319 YRKHIEKDPALERRFQPVY-----VGEP--SVEETIEILFG  352 (821)
T ss_pred             HHHHHhcCHHHHhcceEEe-----cCCC--CHHHHHHHHHH
Confidence            22111    0012345667     8888  88888777764

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=97.73  E-value=0.00023  Score=71.32  Aligned_cols=135  Identities=12%  Similarity=0.129  Sum_probs=76.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY  288 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~  288 (394)
                      ..-+.|+|+.|+|||+|++.+++  .+......+++++      ...+...+...+...         ..    ..+++.
T Consensus       141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~------~~~f~~~~~~~l~~~---------~~----~~f~~~  199 (445)
T PRK12422        141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR------SELFTEHLVSAIRSG---------EM----QRFRQF  199 (445)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee------HHHHHHHHHHHHhcc---------hH----HHHHHH
Confidence            34678999999999999999998  4433223344554      234444555544321         11    223333


Q ss_pred             ccCCeEEEEEeCCCC-CchhH--HHHHhhCCC-CCCCcEEEEecCC-hH----HHhhchh-cCCCceeeCCccCCCCCCC
Q 016120          289 LTNKKYFIVLDDVFD-NSEIW--SDLEELLPD-DENGSRVLITVTD-PD----LLASLEM-ENGEKIRRDSVLFGGPLIR  358 (394)
Q Consensus       289 l~~kr~LlVlDdv~~-~~~~~--~~l~~~l~~-~~~gs~IivTTR~-~~----v~~~~~~-~~~~~~~~~~~~~l~~L~~  358 (394)
                      +. ..-+|++||+.. ....|  +.+...+.. ...|..||+||.. +.    +...+.+ -....++.     ++++  
T Consensus       200 ~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~-----l~~p--  271 (445)
T PRK12422        200 YR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIP-----LHPL--  271 (445)
T ss_pred             cc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEe-----cCCC--
Confidence            33 344888999976 22111  223222211 1235568888754 22    1111110 12346788     9999  


Q ss_pred             ChHHHHHHHHHHhC
Q 016120          359 LKHEAWQFFILHYG  372 (394)
Q Consensus       359 ~~~~~~~Lf~~~~~  372 (394)
                      +.++-..++.+++.
T Consensus       272 d~e~r~~iL~~k~~  285 (445)
T PRK12422        272 TKEGLRSFLERKAE  285 (445)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988753

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.73  E-value=0.00015  Score=78.24  Aligned_cols=43  Identities=12%  Similarity=0.125  Sum_probs=36.9

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++||+.++.++++.|....  ..-+.++|.+|+||||+|+.+..
T Consensus       188 ~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~  230 (852)
T TIGR03345       188 PVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL  230 (852)
T ss_pred             cccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence            78999999999999987653  33445899999999999999987

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.73  E-value=0.00046  Score=71.57  Aligned_cols=168  Identities=9%  Similarity=-0.005  Sum_probs=90.9

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|.+.....|.+.+..+. -...+.++|+.|+||||+|+.+.+..--.+..+.       ..++.-.....|...-..
T Consensus        17 ~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g~~~   88 (576)
T PRK14965         17 DLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEGRSV   88 (576)
T ss_pred             HccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcCCCC
Confidence            89999999999998887642 2455678999999999999888763111000000       000000000111000000


Q ss_pred             CCCCc---cccCc-CHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhchh
Q 016120          267 PSRVS---VIIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASLEM  339 (394)
Q Consensus       267 ~~~~~---~~~~~-~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~~~  339 (394)
                      .....   ..... +..++.+.+... ..+++-++|+|++.. +....+.|...+-.-...+.+|+ ||....+...+  
T Consensus        89 d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI--  166 (576)
T PRK14965         89 DVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI--  166 (576)
T ss_pred             CeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH--
Confidence            00000   00001 222222222211 134556899999987 56667778777765555666665 54445555444  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .+....++     +.++  +.++....+...+
T Consensus       167 ~SRc~~~~-----f~~l--~~~~i~~~L~~i~  191 (576)
T PRK14965        167 LSRCQRFD-----FRRI--PLQKIVDRLRYIA  191 (576)
T ss_pred             HHhhhhhh-----cCCC--CHHHHHHHHHHHH
Confidence            23455666     8888  8887776666543

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=97.72  E-value=0.00026  Score=72.72  Aligned_cols=131  Identities=12%  Similarity=0.127  Sum_probs=77.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCccccccc--CeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYF--DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD  287 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~  287 (394)
                      ..+.|+|..|+|||.|++.+++  .....+  ..+++++      ...+..++...+...         ..+    .+.+
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yit------aeef~~el~~al~~~---------~~~----~f~~  373 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVS------SEEFTNEFINSIRDG---------KGD----SFRR  373 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee------HHHHHHHHHHHHHhc---------cHH----HHHH
Confidence            4578999999999999999998  443322  2345554      334444444433221         111    2223


Q ss_pred             HccCCeEEEEEeCCCC--CchhHH-HHHhhCCC-CCCCcEEEEecCCh---------HHHhhchhcCCCceeeCCccCCC
Q 016120          288 YLTNKKYFIVLDDVFD--NSEIWS-DLEELLPD-DENGSRVLITVTDP---------DLLASLEMENGEKIRRDSVLFGG  354 (394)
Q Consensus       288 ~l~~kr~LlVlDdv~~--~~~~~~-~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~~~~~~~~~l~  354 (394)
                      .+.. -=+|||||+..  ....|. .+...+.. ..+|..|||||...         .+...+   ...-++.     |+
T Consensus       374 ~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf---~~GLvv~-----I~  444 (617)
T PRK14086        374 RYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRF---EWGLITD-----VQ  444 (617)
T ss_pred             Hhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhh---hcCceEE-----cC
Confidence            3322 24788999987  233332 22222221 13355688888763         222333   4566788     99


Q ss_pred             CCCCChHHHHHHHHHHhC
Q 016120          355 PLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       355 ~L~~~~~~~~~Lf~~~~~  372 (394)
                      +.  +.+.-..++.+++.
T Consensus       445 ~P--D~EtR~aIL~kka~  460 (617)
T PRK14086        445 PP--ELETRIAILRKKAV  460 (617)
T ss_pred             CC--CHHHHHHHHHHHHH
Confidence            99  99999999998854

>PRK06620 hypothetical protein; Validated

Probab=97.71  E-value=0.00018  Score=64.98  Aligned_cols=109  Identities=14%  Similarity=0.088  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHc
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL  289 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l  289 (394)
                      +.+-|+|++|+|||+|++.+++...  .     .++.  ..+.                        ..        +..
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~------------------------~~--------~~~   83 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF------------------------NE--------EIL   83 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh------------------------ch--------hHH
Confidence            5688999999999999999887421  1     1111  0000                        00        011


Q ss_pred             cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-------HHhhchhcCCCceeeCCccCCCCCCCChH
Q 016120          290 TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-------LLASLEMENGEKIRRDSVLFGGPLIRLKH  361 (394)
Q Consensus       290 ~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-------v~~~~~~~~~~~~~~~~~~~l~~L~~~~~  361 (394)
                      + ..-+|++||+.. ....+-.+...+.  .+|..||+|++.+.       ..+.+   ...-+++     ++++  +.+
T Consensus        84 ~-~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl---~~gl~~~-----l~~p--d~~  150 (214)
T PRK06620         84 E-KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRI---KSVLSIL-----LNSP--DDE  150 (214)
T ss_pred             h-cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHH---hCCceEe-----eCCC--CHH
Confidence            1 234688999976 1112222222222  45678999887532       22222   3455888     9999  999


Q ss_pred             HHHHHHHHHhC
Q 016120          362 EAWQFFILHYG  372 (394)
Q Consensus       362 ~~~~Lf~~~~~  372 (394)
                      +-..++.+.+.
T Consensus       151 ~~~~~l~k~~~  161 (214)
T PRK06620        151 LIKILIFKHFS  161 (214)
T ss_pred             HHHHHHHHHHH
Confidence            98888888754

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=97.70  E-value=0.00049  Score=69.07  Aligned_cols=136  Identities=17%  Similarity=0.179  Sum_probs=78.3

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCccccccc-C-eeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYF-D-CLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR  286 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~  286 (394)
                      ..-+.|+|.+|+|||+|++.+++  ...... . .++|++.      ..+..++...+...         ....    +.
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~---------~~~~----f~  188 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG---------KLNE----FR  188 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc---------cHHH----HH
Confidence            34588999999999999999998  444333 2 3456653      44556666555322         2222    22


Q ss_pred             HHccCCeEEEEEeCCCC--CchhH-HHHHhhCCC-CCCCcEEEEecC-ChHHHhh----chh-cCCCceeeCCccCCCCC
Q 016120          287 DYLTNKKYFIVLDDVFD--NSEIW-SDLEELLPD-DENGSRVLITVT-DPDLLAS----LEM-ENGEKIRRDSVLFGGPL  356 (394)
Q Consensus       287 ~~l~~kr~LlVlDdv~~--~~~~~-~~l~~~l~~-~~~gs~IivTTR-~~~v~~~----~~~-~~~~~~~~~~~~~l~~L  356 (394)
                      +....+.-+|++||+..  +...+ +.+...+.. ...|..||+||. .+.-...    +.+ -....++.     +++.
T Consensus       189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~-----i~~p  263 (440)
T PRK14088        189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAK-----LEPP  263 (440)
T ss_pred             HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEe-----eCCC
Confidence            22223455899999985  12212 223222211 123456888874 4422211    100 02345777     9999


Q ss_pred             CCChHHHHHHHHHHhC
Q 016120          357 IRLKHEAWQFFILHYG  372 (394)
Q Consensus       357 ~~~~~~~~~Lf~~~~~  372 (394)
                        +.+.-..++++.+.
T Consensus       264 --d~e~r~~IL~~~~~  277 (440)
T PRK14088        264 --DEETRKKIARKMLE  277 (440)
T ss_pred             --CHHHHHHHHHHHHH
Confidence              99999999988754

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=97.70  E-value=0.00066  Score=68.30  Aligned_cols=152  Identities=10%  Similarity=0.001  Sum_probs=89.7

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccc---------------------cccCeeEEE
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVK---------------------FYFDCLAWV  245 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------------~~F~~~~wv  245 (394)
                      +++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+.+..--.                     .+++. +++
T Consensus        18 diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~-~~i   95 (451)
T PRK06305         18 EILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV-LEI   95 (451)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce-EEe
Confidence            89999999999998887642 23567789999999999998886521100                     01111 111


Q ss_pred             EeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcE
Q 016120          246 RVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSR  323 (394)
Q Consensus       246 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~  323 (394)
                      .........                      +...+.+.+... ..+++-++|+|++.. +....+.|...+-....++.
T Consensus        96 ~g~~~~gid----------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~  153 (451)
T PRK06305         96 DGASHRGIE----------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK  153 (451)
T ss_pred             eccccCCHH----------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence            100000000                      111222222111 135667889999987 45566777777765555666


Q ss_pred             EEEecC-ChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          324 VLITVT-DPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       324 IivTTR-~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      +|++|. ...+...+  .+....++     +.++  +.++....+.+.+
T Consensus       154 ~Il~t~~~~kl~~tI--~sRc~~v~-----f~~l--~~~el~~~L~~~~  193 (451)
T PRK06305        154 FFLATTEIHKIPGTI--LSRCQKMH-----LKRI--PEETIIDKLALIA  193 (451)
T ss_pred             EEEEeCChHhcchHH--HHhceEEe-----CCCC--CHHHHHHHHHHHH
Confidence            666553 33343333  23456778     9999  9988877776654

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.65  E-value=0.0011  Score=71.91  Aligned_cols=132  Identities=13%  Similarity=0.160  Sum_probs=76.5

Q ss_pred             ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD  259 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~  259 (394)
                      .++|.+..++.+.+.+...       +....++.++|+.|+|||++|+.+...  ....-...+-++.+.-.....    
T Consensus       566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~----  639 (852)
T TIGR03346       566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS----  639 (852)
T ss_pred             ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch----
Confidence            6899999999999888642       123457889999999999999999872  222112233444443222111    


Q ss_pred             HHHHhCCCCCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEEE
Q 016120          260 IIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDD-----------ENGSRVLI  326 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~Iiv  326 (394)
                      ...-++.+..   ..+. ....+...++.   ....+|+||++.. +++.++.+...+..+           -..+-||+
T Consensus       640 ~~~l~g~~~g---~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~  713 (852)
T TIGR03346       640 VARLIGAPPG---YVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM  713 (852)
T ss_pred             HHHhcCCCCC---ccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence            1111222211   0111 11222222221   2335899999998 778888888777443           13344777


Q ss_pred             ecCC
Q 016120          327 TVTD  330 (394)
Q Consensus       327 TTR~  330 (394)
                      ||..
T Consensus       714 TSn~  717 (852)
T TIGR03346       714 TSNL  717 (852)
T ss_pred             eCCc
Confidence            7775

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=97.64  E-value=0.00067  Score=58.50  Aligned_cols=135  Identities=15%  Similarity=0.157  Sum_probs=75.9

Q ss_pred             eecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC----cccc--------------cccCeeEEEEeCCCC
Q 016120          190 EFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN----DHVK--------------FYFDCLAWVRVSIAY  251 (394)
Q Consensus       190 Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~----~~~~--------------~~F~~~~wv~vs~~~  251 (394)
                      |-++..+.+.+.+..+ .-...+.++|+.|+||+++|..+...    ....              ....-..|+.-....
T Consensus         1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~   79 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK   79 (162)
T ss_dssp             S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred             CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence            3445556666666554 23456789999999999999877642    1110              112223344322210


Q ss_pred             CHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHHHc-----cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEE
Q 016120          252 DFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRV  324 (394)
Q Consensus       252 ~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~I  324 (394)
                                             .. ..++.. .+.+.+     .++.=++|+||+.. +.+.++.|...+-.-..++.+
T Consensus        80 -----------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f  135 (162)
T PF13177_consen   80 -----------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF  135 (162)
T ss_dssp             -----------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred             -----------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence                                   01 233333 222222     23566899999998 778888888888766778898


Q ss_pred             EEecCChH-HHhhchhcCCCceeeCCccCCCCC
Q 016120          325 LITVTDPD-LLASLEMENGEKIRRDSVLFGGPL  356 (394)
Q Consensus       325 ivTTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L  356 (394)
                      |++|.+.+ +....  .+....++     +.+|
T Consensus       136 iL~t~~~~~il~TI--~SRc~~i~-----~~~l  161 (162)
T PF13177_consen  136 ILITNNPSKILPTI--RSRCQVIR-----FRPL  161 (162)
T ss_dssp             EEEES-GGGS-HHH--HTTSEEEE-----E---
T ss_pred             EEEECChHHChHHH--HhhceEEe-----cCCC
Confidence            88888763 44444  34566677     7666

...

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=97.64  E-value=0.0015  Score=67.50  Aligned_cols=165  Identities=10%  Similarity=-0.042  Sum_probs=93.5

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc---ccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF---YFDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      +++|-+..++.+..++..+. -...+.++|+.|+||||+|+.+.+..-...   .+.|.      ..    ..-..|...
T Consensus        17 diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~------~C----~~C~~i~~~   85 (563)
T PRK06647         17 SLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG------EC----SSCKSIDND   85 (563)
T ss_pred             HccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc------cc----hHHHHHHcC
Confidence            89999999999999987643 345678999999999999999876311110   01110      00    000011000


Q ss_pred             hCCCCCCccccCc-CHHHHHHHH---HHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hHHHhh
Q 016120          264 VMPPSRVSVIIGE-DYQLKKSIL---RDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD-PDLLAS  336 (394)
Q Consensus       264 l~~~~~~~~~~~~-~~~~~~~~l---~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~  336 (394)
                      -...-........ ..+++.+..   ... ..+++-++|+|++.. +...++.|...+......+.+|++|.. ..+...
T Consensus        86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t  165 (563)
T PRK06647         86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT  165 (563)
T ss_pred             CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence            0000000000011 233332222   211 235666899999988 566778888877665566666665543 444444


Q ss_pred             chhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          337 LEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       337 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      +  .+....++     +.++  +.++....+.+.+
T Consensus       166 I--~SRc~~~~-----f~~l--~~~el~~~L~~i~  191 (563)
T PRK06647        166 I--KSRCQHFN-----FRLL--SLEKIYNMLKKVC  191 (563)
T ss_pred             H--HHhceEEE-----ecCC--CHHHHHHHHHHHH
Confidence            3  23455678     8999  8888777776654

>PRK10536 hypothetical protein; Provisional

Probab=97.63  E-value=0.0008  Score=61.89  Aligned_cols=53  Identities=11%  Similarity=0.097  Sum_probs=39.3

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeE
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLA  243 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~  243 (394)
                      .+.+++.....++.+|...    ..+.+.|+.|+|||+||..+..+.-....|+..+
T Consensus        56 ~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi  108 (262)
T PRK10536         56 PILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII  108 (262)
T ss_pred             cccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence            5677888888999988653    4888999999999999988876422233454433

>PRK08118 topology modulation protein; Reviewed

Probab=97.63  E-value=2.6e-05  Score=67.72  Aligned_cols=34  Identities=18%  Similarity=0.367  Sum_probs=27.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhcCcccc-cccCeeEE
Q 016120          211 VVAILDSSGFDKTVFTADTYNNDHVK-FYFDCLAW  244 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w  244 (394)
                      .|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~   37 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW   37 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence            57899999999999999999854443 45777775

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.62  E-value=0.00094  Score=72.43  Aligned_cols=132  Identities=16%  Similarity=0.174  Sum_probs=73.8

Q ss_pred             ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD  259 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~  259 (394)
                      .++|.+..++.+...+...       +....++.++|+.|+|||++|+.+.+.  ....-...+.++++.-.. ...   
T Consensus       569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~~~---  642 (857)
T PRK10865        569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-KHS---  642 (857)
T ss_pred             eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-hhh---
Confidence            6889999988888887532       222357889999999999999999862  211112234444433211 111   


Q ss_pred             HHHHhCCCCCCccccCcCHHHHHHHHHHHccC-CeEEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEEE
Q 016120          260 IIKSVMPPSRVSVIIGEDYQLKKSILRDYLTN-KKYFIVLDDVFD-NSEIWSDLEELLPDD-----------ENGSRVLI  326 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~Iiv  326 (394)
                      +..-++.+..   ....+..   ..+.+.++. ..-+|+||++.. ++..+..+...+..+           ...+-||+
T Consensus       643 ~~~LiG~~pg---y~g~~~~---g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~  716 (857)
T PRK10865        643 VSRLVGAPPG---YVGYEEG---GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIM  716 (857)
T ss_pred             HHHHhCCCCc---ccccchh---HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEE
Confidence            1112222211   0111111   122333322 236999999987 677788877766433           12233777


Q ss_pred             ecCC
Q 016120          327 TVTD  330 (394)
Q Consensus       327 TTR~  330 (394)
                      ||..
T Consensus       717 TSN~  720 (857)
T PRK10865        717 TSNL  720 (857)
T ss_pred             eCCc
Confidence            8765

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=97.61  E-value=0.0018  Score=66.19  Aligned_cols=156  Identities=13%  Similarity=0.154  Sum_probs=83.7

Q ss_pred             ccceecccHHHHHHHHh---cC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120          187 DINEFERGREELFDLLI---EG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  256 (394)
                      ++.|.+..++++.+.+.   ..       ....+-+.++|++|+|||+||+.+++.  ...+     ++.++.    ..+
T Consensus        56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~----~~~  124 (495)
T TIGR01241        56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG----SDF  124 (495)
T ss_pred             HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH----HHH
Confidence            88998877766655443   11       122345779999999999999999883  3222     222221    111


Q ss_pred             HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C----------chhHHH----HHhhCC--CCC
Q 016120          257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N----------SEIWSD----LEELLP--DDE  319 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~----------~~~~~~----l~~~l~--~~~  319 (394)
                          .....+.         ....+...+.......+.+|+||++.. .          ...+..    +...+.  ...
T Consensus       125 ----~~~~~g~---------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~  191 (495)
T TIGR01241       125 ----VEMFVGV---------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN  191 (495)
T ss_pred             ----HHHHhcc---------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence                1111110         223344444444455779999999955 0          011222    222221  122


Q ss_pred             CCcEEEEecCChHHHh-hchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120          320 NGSRVLITVTDPDLLA-SLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       320 ~gs~IivTTR~~~v~~-~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~  373 (394)
                      .+-.||.||..++... .+-. ..-...+.     ++..  +.++-.++|..++..
T Consensus       192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~-----i~~P--d~~~R~~il~~~l~~  240 (495)
T TIGR01241       192 TGVIVIAATNRPDVLDPALLRPGRFDRQVV-----VDLP--DIKGREEILKVHAKN  240 (495)
T ss_pred             CCeEEEEecCChhhcCHHHhcCCcceEEEE-----cCCC--CHHHHHHHHHHHHhc
Confidence            3445566666543222 1100 01245677     8888  888888888877644

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.60  E-value=0.00051  Score=60.28  Aligned_cols=125  Identities=15%  Similarity=0.149  Sum_probs=69.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE---EeCCCCCHHHH------HHHHHHHhCCCCCCccccCc-C-
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV---RVSIAYDFGKM------LDDIIKSVMPPSRVSVIIGE-D-  277 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---~vs~~~~~~~i------~~~i~~~l~~~~~~~~~~~~-~-  277 (394)
                      -.+++|+|..|.|||||.+.++.-  . ......+++   ++. ..+....      .-++++.++........... + 
T Consensus        25 G~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~  100 (180)
T cd03214          25 GEIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG  100 (180)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence            358899999999999999999873  2 223344443   222 1122221      11245555443211111222 2 


Q ss_pred             HHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CC-CcEEEEecCChHHHhhc
Q 016120          278 YQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-EN-GSRVLITVTDPDLLASL  337 (394)
Q Consensus       278 ~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~-gs~IivTTR~~~v~~~~  337 (394)
                      -+...-.+...+...+-+++||+--.  +....+.+...+..- .. |..||++|.+......+
T Consensus       101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~  164 (180)
T cd03214         101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY  164 (180)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            22223334455566778899999876  444445555444322 22 66788888887765444

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=97.57  E-value=0.0021  Score=66.47  Aligned_cols=168  Identities=10%  Similarity=-0.030  Sum_probs=91.6

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|.+.....+.+++..+. -...+.++|+.|+||||+|+.+....-..+.-+       ..+++.-.....|......
T Consensus        17 ~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~~~   88 (559)
T PRK05563         17 DVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGSLM   88 (559)
T ss_pred             hccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCCCC
Confidence            89999999999999987653 345667899999999999988865211000000       0000100111111110000


Q ss_pred             CCCCccccCc-CHH---HHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhchh
Q 016120          267 PSRVSVIIGE-DYQ---LKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASLEM  339 (394)
Q Consensus       267 ~~~~~~~~~~-~~~---~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~~~  339 (394)
                      .......... ..+   ++.+.+... ..++.-++|+|++.. +...++.|...+.....+..+|+ ||....+...+  
T Consensus        89 dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI--  166 (559)
T PRK05563         89 DVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI--  166 (559)
T ss_pred             CeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH--
Confidence            0000000011 222   222222211 135667889999987 56677888777765444555554 44444444433  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .+....+.     +.++  +.++....+.+.+
T Consensus       167 ~SRc~~~~-----f~~~--~~~ei~~~L~~i~  191 (559)
T PRK05563        167 LSRCQRFD-----FKRI--SVEDIVERLKYIL  191 (559)
T ss_pred             HhHheEEe-----cCCC--CHHHHHHHHHHHH
Confidence            23345677     8899  8888877776654

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=97.56  E-value=0.0014  Score=63.30  Aligned_cols=159  Identities=9%  Similarity=0.047  Sum_probs=89.0

Q ss_pred             ccce-ecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccccc---Ce---e--EEEEeCCCCCHHHHH
Q 016120          187 DINE-FERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYF---DC---L--AWVRVSIAYDFGKML  257 (394)
Q Consensus       187 ~~~G-r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~---~--~wv~vs~~~~~~~i~  257 (394)
                      .++| -+..++.+.+.+..+ .-.....++|+.|+||||+|+.+.+..--.+..   .|   .  .++.....+|...+ 
T Consensus         6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i-   83 (329)
T PRK08058          6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV-   83 (329)
T ss_pred             HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe-
Confidence            4566 555666666666543 235567899999999999998885521000000   00   0  00000001110000 


Q ss_pred             HHHHHHhCCCCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh
Q 016120          258 DDIIKSVMPPSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP  331 (394)
Q Consensus       258 ~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~  331 (394)
                             ...      -.. ..+++.+.+...    ..+.+=++|+|++.. +....+.|...+-.-..++.+|++|.++
T Consensus        84 -------~~~------~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~  150 (329)
T PRK08058         84 -------APD------GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENK  150 (329)
T ss_pred             -------ccc------cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCCh
Confidence                   000      001 233333332221    234556799999987 6667778888887666777777777654


Q ss_pred             -HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHH
Q 016120          332 -DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFIL  369 (394)
Q Consensus       332 -~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~  369 (394)
                       .+...+  .+....++     +.++  +.++....+.+
T Consensus       151 ~~ll~TI--rSRc~~i~-----~~~~--~~~~~~~~L~~  180 (329)
T PRK08058        151 HQILPTI--LSRCQVVE-----FRPL--PPESLIQRLQE  180 (329)
T ss_pred             HhCcHHH--Hhhceeee-----CCCC--CHHHHHHHHHH
Confidence             444444  34567788     9999  99988777765

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.56  E-value=0.0013  Score=70.40  Aligned_cols=160  Identities=19%  Similarity=0.236  Sum_probs=88.0

Q ss_pred             ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|.+..+++|.+.+.-.           -...+-+.++|++|+|||++|+.+++  +...+|     +.+..    . 
T Consensus       454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~--e~~~~f-----i~v~~----~-  521 (733)
T TIGR01243       454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT--ESGANF-----IAVRG----P-  521 (733)
T ss_pred             hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hcCCCE-----EEEeh----H-
Confidence            7788888887777765421           12344578899999999999999998  444333     22211    1 


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-------C--c----hhHHHHHhhCCC--CCC
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-------N--S----EIWSDLEELLPD--DEN  320 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-------~--~----~~~~~l~~~l~~--~~~  320 (394)
                         +++...-         +.+...+...+...-...+++|+||++..       .  .    .....+...+..  ...
T Consensus       522 ---~l~~~~v---------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~  589 (733)
T TIGR01243       522 ---EILSKWV---------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS  589 (733)
T ss_pred             ---HHhhccc---------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence               1111111         11223333333333345789999999864       0  0    012223333332  122


Q ss_pred             CcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCCCC
Q 016120          321 GSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLE  377 (394)
Q Consensus       321 gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~~~  377 (394)
                      +--||.||..++.....-..  .-...+.     +++.  +.++-.++|+.+....+..
T Consensus       590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~-----v~~P--d~~~R~~i~~~~~~~~~~~  641 (733)
T TIGR01243       590 NVVVIAATNRPDILDPALLRPGRFDRLIL-----VPPP--DEEARKEIFKIHTRSMPLA  641 (733)
T ss_pred             CEEEEEeCCChhhCCHhhcCCCccceEEE-----eCCc--CHHHHHHHHHHHhcCCCCC
Confidence            34455577665443322111  2356677     8888  8888888887765544433

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=97.54  E-value=0.00044  Score=68.93  Aligned_cols=158  Identities=17%  Similarity=0.204  Sum_probs=88.7

Q ss_pred             ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|.+..+++|.+.+...           -....-+.++|++|+|||++|+.+++  +....|     +.+...    .
T Consensus       184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f-----i~V~~s----e  252 (438)
T PTZ00361        184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF-----LRVVGS----E  252 (438)
T ss_pred             HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE-----EEEecc----h
Confidence            7889999998888877421           02344677999999999999999998  444444     222111    1


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--C----------chh---HHHHHhhCC--CC
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--N----------SEI---WSDLEELLP--DD  318 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~----------~~~---~~~l~~~l~--~~  318 (394)
                      +    .....+         .....+...+.....+.+.+|+||++..  .          ...   ...+...+.  ..
T Consensus       253 L----~~k~~G---------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~  319 (438)
T PTZ00361        253 L----IQKYLG---------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS  319 (438)
T ss_pred             h----hhhhcc---------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence            1    111100         0222223333333345788999999753  0          000   111222221  11


Q ss_pred             CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120          319 ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP  375 (394)
Q Consensus       319 ~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~  375 (394)
                      ..+.+||.||...+.....-..  .-...+.     +++.  +.++..++|..++....
T Consensus       320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~-----~~~P--d~~~R~~Il~~~~~k~~  371 (438)
T PTZ00361        320 RGDVKVIMATNRIESLDPALIRPGRIDRKIE-----FPNP--DEKTKRRIFEIHTSKMT  371 (438)
T ss_pred             cCCeEEEEecCChHHhhHHhccCCeeEEEEE-----eCCC--CHHHHHHHHHHHHhcCC
Confidence            3356788888766444332101  1245666     8888  88999999987754433

>PRK07952 DNA replication protein DnaC; Validated

Probab=97.54  E-value=0.00042  Score=63.76  Aligned_cols=116  Identities=8%  Similarity=0.094  Sum_probs=59.9

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccc
Q 016120          195 REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVII  274 (394)
Q Consensus       195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~  274 (394)
                      +..+.+.......+...+.++|.+|+|||+||..+++.  ....-..+++++      ..+++..+-........     
T Consensus        85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~~~~-----  151 (244)
T PRK07952         85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSNSET-----  151 (244)
T ss_pred             HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhhccc-----
Confidence            33444443322223456789999999999999999984  333233445554      34444444433221100     


Q ss_pred             CcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHH--HHhhCCCC-CCCcEEEEecCC
Q 016120          275 GEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSD--LEELLPDD-ENGSRVLITVTD  330 (394)
Q Consensus       275 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~--l~~~l~~~-~~gs~IivTTR~  330 (394)
                        +...+.    +.+. +.=||||||+.. ....|..  +...+... .+.-.+||||-.
T Consensus       152 --~~~~~l----~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl  204 (244)
T PRK07952        152 --SEEQLL----NDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS  204 (244)
T ss_pred             --cHHHHH----HHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence              222222    2343 344889999976 3455553  22222211 112336666664

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=97.54  E-value=0.0013  Score=62.91  Aligned_cols=170  Identities=10%  Similarity=0.024  Sum_probs=96.8

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc---cc----------ccccCeeEEEEeCCCCCH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND---HV----------KFYFDCLAWVRVSIAYDF  253 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~----------~~~F~~~~wv~vs~~~~~  253 (394)
                      +++|.+..++.+...+..+. -....-++|+.|+||+++|..+....   ..          ....+-..|+.-....+-
T Consensus         5 ~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g   83 (314)
T PRK07399          5 NLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG   83 (314)
T ss_pred             HhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence            67899999999888887652 34688899999999999987775421   10          111223345422100000


Q ss_pred             HHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHHHc-----cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE
Q 016120          254 GKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI  326 (394)
Q Consensus       254 ~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv  326 (394)
                      ..+-..-+...+....   .... ..++.. .+.+.+     .+++-++|+|++.. +....+.|...+-.-. .+.+|+
T Consensus        84 ~~~~~~~~~~~~~~~~---~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fIL  158 (314)
T PRK07399         84 KLITASEAEEAGLKRK---APPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLIL  158 (314)
T ss_pred             cccchhhhhhcccccc---ccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEE
Confidence            0000111111111000   0011 233332 233333     35677899999988 6667777777775444 345555


Q ss_pred             ecC-ChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          327 TVT-DPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       327 TTR-~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      +|. ...+...+  .+....++     +.++  +.++..+.+.+..
T Consensus       159 i~~~~~~Ll~TI--~SRcq~i~-----f~~l--~~~~~~~~L~~~~  195 (314)
T PRK07399        159 IAPSPESLLPTI--VSRCQIIP-----FYRL--SDEQLEQVLKRLG  195 (314)
T ss_pred             EECChHhCcHHH--HhhceEEe-----cCCC--CHHHHHHHHHHhh
Confidence            544 44555544  34567888     9999  9999999888763

>PRK06526 transposase; Provisional

Probab=97.53  E-value=0.00018  Score=66.72  Aligned_cols=23  Identities=22%  Similarity=0.105  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+.++|++|+|||+||..+.+
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~  120 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGI  120 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHH
Confidence            34578999999999999999987

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.52  E-value=0.0004  Score=75.11  Aligned_cols=132  Identities=13%  Similarity=0.126  Sum_probs=75.4

Q ss_pred             ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD  259 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~  259 (394)
                      .++|.+..++.+.+.+...       +....++.++|+.|+|||.||+.+...  .-......+=++++.-.+    -..
T Consensus       567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~----~~~  640 (852)
T TIGR03345       567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQE----AHT  640 (852)
T ss_pred             eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhh----hhh
Confidence            7899999999998888531       234567899999999999999888662  211111112222222111    011


Q ss_pred             HHHHhCCCCCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEEE
Q 016120          260 IIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDE-----------NGSRVLI  326 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~Iiv  326 (394)
                      +..-++.+..   ..+. ....+...++   +....+|+||++.. ++..++.+...+..+.           ..+-||+
T Consensus       641 ~~~l~g~~~g---yvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~  714 (852)
T TIGR03345       641 VSRLKGSPPG---YVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL  714 (852)
T ss_pred             hccccCCCCC---cccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence            1112222211   0111 1122333333   24557999999987 6777777776665442           4566777


Q ss_pred             ecCC
Q 016120          327 TVTD  330 (394)
Q Consensus       327 TTR~  330 (394)
                      ||..
T Consensus       715 TSNl  718 (852)
T TIGR03345       715 TSNA  718 (852)
T ss_pred             eCCC
Confidence            7654

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK12608 transcription termination factor Rho; Provisional

Probab=97.52  E-value=0.00047  Score=66.78  Aligned_cols=106  Identities=15%  Similarity=0.008  Sum_probs=64.4

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc-ccCe-eEEEEeCCCC-CHHHHHHHHHHHhCCCCCC
Q 016120          194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF-YFDC-LAWVRVSIAY-DFGKMLDDIIKSVMPPSRV  270 (394)
Q Consensus       194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~-~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~  270 (394)
                      ...++++.+..-..+. ...|+|..|+|||||++.+.+  .+.. +-+. ++|+.+.+.. .+.+++..+...+.....+
T Consensus       119 ~~~RvID~l~PiGkGQ-R~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d  195 (380)
T PRK12608        119 LSMRVVDLVAPIGKGQ-RGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD  195 (380)
T ss_pred             hhHhhhhheeecCCCc-eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC
Confidence            3455777777544343 457999999999999999887  3332 2234 4677777644 5777888877766544321


Q ss_pred             ccccCc-CHHHHHHHHHHHc--cCCeEEEEEeCCC
Q 016120          271 SVIIGE-DYQLKKSILRDYL--TNKKYFIVLDDVF  302 (394)
Q Consensus       271 ~~~~~~-~~~~~~~~l~~~l--~~kr~LlVlDdv~  302 (394)
                      ...... ..........+++  ++++.+||+|++.
T Consensus       196 e~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt  230 (380)
T PRK12608        196 RPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT  230 (380)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence            000111 1111222333333  5799999999985

>PRK12377 putative replication protein; Provisional

Probab=97.52  E-value=0.00042  Score=63.96  Aligned_cols=101  Identities=14%  Similarity=0.013  Sum_probs=55.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY  288 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~  288 (394)
                      ...+.++|.+|+|||+||..+.+  ........++++++      .+++..+-.......        .....    .+.
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~------~~l~~~l~~~~~~~~--------~~~~~----l~~  160 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTV------PDVMSRLHESYDNGQ--------SGEKF----LQE  160 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEH------HHHHHHHHHHHhccc--------hHHHH----HHH
Confidence            45788999999999999999999  44444444566654      344444443321110        11211    222


Q ss_pred             ccCCeEEEEEeCCCC-CchhHH--HHHhhCCCC-CCCcEEEEecCC
Q 016120          289 LTNKKYFIVLDDVFD-NSEIWS--DLEELLPDD-ENGSRVLITVTD  330 (394)
Q Consensus       289 l~~kr~LlVlDdv~~-~~~~~~--~l~~~l~~~-~~gs~IivTTR~  330 (394)
                      + .+-=||||||+.. ....|.  .+...+... .++--+||||-.
T Consensus       161 l-~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl  205 (248)
T PRK12377        161 L-CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL  205 (248)
T ss_pred             h-cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            2 3456899999954 133343  333333221 222236777664

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.51  E-value=0.0024  Score=66.66  Aligned_cols=170  Identities=9%  Similarity=-0.041  Sum_probs=92.1

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|.+.....|..++..+. -...+.++|+.|+||||+|+.++...-....... .    ...+..-...+.+......
T Consensus        17 ~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~----~~~Cg~C~~C~~i~~g~h~   90 (620)
T PRK14948         17 ELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T----PEPCGKCELCRAIAAGNAL   90 (620)
T ss_pred             hccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C----CCCCcccHHHHHHhcCCCc
Confidence            88999999999988887653 2346678999999999999999763211100000 0    0001111111111111110


Q ss_pred             CCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hHHHhhchh
Q 016120          267 PSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD-PDLLASLEM  339 (394)
Q Consensus       267 ~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~  339 (394)
                      .......... ..+.+.+.+...    ..+++-++|+|++.. +...++.|...+-.-...+.+|++|.+ ..+...+  
T Consensus        91 D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI--  168 (620)
T PRK14948         91 DVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI--  168 (620)
T ss_pred             cEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH--
Confidence            0000000011 233333332221    124566889999988 566778888777655455555555544 3443333  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .+....++     +.++  +.++....+.+.+
T Consensus       169 rSRc~~~~-----f~~l--~~~ei~~~L~~ia  193 (620)
T PRK14948        169 ISRCQRFD-----FRRI--PLEAMVQHLSEIA  193 (620)
T ss_pred             HhheeEEE-----ecCC--CHHHHHHHHHHHH
Confidence            23456677     8888  8887776666543

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.51  E-value=0.00024  Score=64.87  Aligned_cols=37  Identities=19%  Similarity=0.219  Sum_probs=30.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEe
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRV  247 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v  247 (394)
                      .-.++|+|..|+|||||...+..  .....|.++++++-
T Consensus        13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~   49 (241)
T PF04665_consen   13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP   49 (241)
T ss_pred             CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence            34677999999999999999987  57778987777744

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=97.50  E-value=0.0021  Score=61.87  Aligned_cols=72  Identities=13%  Similarity=0.175  Sum_probs=51.7

Q ss_pred             CCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHH
Q 016120          291 NKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFI  368 (394)
Q Consensus       291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~  368 (394)
                      +++-++|+|++.. +....+.+...+-.-..++.+|+||.++ .+....  .+....++     +.++  +.+++.+.+.
T Consensus       105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI--~SRc~~~~-----~~~~--~~~~~~~~L~  175 (328)
T PRK05707        105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTI--KSRCQQQA-----CPLP--SNEESLQWLQ  175 (328)
T ss_pred             CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHH--Hhhceeee-----CCCc--CHHHHHHHHH
Confidence            3444557799998 7777888888776655677777777775 444444  24466788     9999  9999988887


Q ss_pred             HHh
Q 016120          369 LHY  371 (394)
Q Consensus       369 ~~~  371 (394)
                      +..
T Consensus       176 ~~~  178 (328)
T PRK05707        176 QAL  178 (328)
T ss_pred             Hhc
Confidence            653

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.49  E-value=0.0008  Score=72.98  Aligned_cols=43  Identities=9%  Similarity=0.089  Sum_probs=36.9

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++||+.++.++++.|....  ...+.++|.+|+|||++|+.+..
T Consensus       179 ~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~  221 (857)
T PRK10865        179 PVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ  221 (857)
T ss_pred             cCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH
Confidence            79999999999999997754  33455899999999999999887

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.48  E-value=0.00065  Score=73.79  Aligned_cols=43  Identities=9%  Similarity=0.090  Sum_probs=36.4

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++||+.++.++++.|....  ...+.++|++|+|||++|..+..
T Consensus       174 ~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~  216 (852)
T TIGR03346       174 PVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQ  216 (852)
T ss_pred             cCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence            68999999999999997654  23445799999999999998887

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>CHL00176 ftsH cell division protein; Validated

Probab=97.48  E-value=0.0012  Score=69.07  Aligned_cols=156  Identities=12%  Similarity=0.161  Sum_probs=85.2

Q ss_pred             ccceecccHHHHHHHH---hcCC-------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120          187 DINEFERGREELFDLL---IEGP-------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L---~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  256 (394)
                      ++.|.++..+++.+.+   ....       ...+-+.++|++|+|||+||+.+++.  ...+     |+.++..    .+
T Consensus       184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~p-----~i~is~s----~f  252 (638)
T CHL00176        184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEVP-----FFSISGS----EF  252 (638)
T ss_pred             hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----eeeccHH----HH
Confidence            7889877666655443   3221       12446789999999999999999883  2222     3333211    11


Q ss_pred             HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C----------chh----HHHHHhhCCC--CC
Q 016120          257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N----------SEI----WSDLEELLPD--DE  319 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~----------~~~----~~~l~~~l~~--~~  319 (394)
                          .....+.         ....+...+.......+++|+||++.. .          ...    +..+...+..  ..
T Consensus       253 ----~~~~~g~---------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~  319 (638)
T CHL00176        253 ----VEMFVGV---------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN  319 (638)
T ss_pred             ----HHHhhhh---------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence                0100000         222334444455567889999999964 0          111    2223222211  23


Q ss_pred             CCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120          320 NGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       320 ~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~  373 (394)
                      .+-.||.||..++.....-..  .-...+.     +++.  +.++-.++++.++..
T Consensus       320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~-----v~lP--d~~~R~~IL~~~l~~  368 (638)
T CHL00176        320 KGVIVIAATNRVDILDAALLRPGRFDRQIT-----VSLP--DREGRLDILKVHARN  368 (638)
T ss_pred             CCeeEEEecCchHhhhhhhhccccCceEEE-----ECCC--CHHHHHHHHHHHHhh
Confidence            355566677665433321001  1245667     8888  888888888877543

>PRK08939 primosomal protein DnaI; Reviewed

Probab=97.44  E-value=0.00053  Score=65.37  Aligned_cols=119  Identities=12%  Similarity=0.116  Sum_probs=66.5

Q ss_pred             ecccHHHHHHHHhcCC--CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 016120          191 FERGREELFDLLIEGP--SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPS  268 (394)
Q Consensus       191 r~~~~~~i~~~L~~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~  268 (394)
                      +........+++..-.  +...-+-++|..|+|||.||..+++.  ....-..+.++++      ..++.++....... 
T Consensus       136 ~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~------~~l~~~lk~~~~~~-  206 (306)
T PRK08939        136 RLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHF------PEFIRELKNSISDG-  206 (306)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEH------HHHHHHHHHHHhcC-
Confidence            3334444455554321  13456789999999999999999994  3332223455654      34555555544221 


Q ss_pred             CCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHH--HHhhC-CCC-CCCcEEEEecCCh
Q 016120          269 RVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSD--LEELL-PDD-ENGSRVLITVTDP  331 (394)
Q Consensus       269 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~--l~~~l-~~~-~~gs~IivTTR~~  331 (394)
                              +....   +.. + .+-=||||||+.. ....|..  +...+ ... .++-.+|+||-..
T Consensus       207 --------~~~~~---l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~  261 (306)
T PRK08939        207 --------SVKEK---IDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD  261 (306)
T ss_pred             --------cHHHH---HHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence                    22222   222 2 2456899999976 4556743  44433 222 2344577887753

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.42  E-value=0.006  Score=56.93  Aligned_cols=155  Identities=12%  Similarity=0.073  Sum_probs=79.1

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHH------------H
Q 016120          194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDI------------I  261 (394)
Q Consensus       194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i------------~  261 (394)
                      .++++...+..+    .-+.+.|++|+|||+||+.+.+  ....   ..+.++.....+...++...            .
T Consensus        10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~   80 (262)
T TIGR02640        10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFI   80 (262)
T ss_pred             HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHH
Confidence            344555555443    2445899999999999999986  3322   23455555555444433221            1


Q ss_pred             HHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCC----------------CCCcEE
Q 016120          262 KSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDD----------------ENGSRV  324 (394)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~----------------~~gs~I  324 (394)
                      ........   ..+..+  ....+....+ +...|++|++.. +.+.+..|...+..+                .++.+|
T Consensus        81 ~~~~~~~~---~~~~~~--~~g~l~~A~~-~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frv  154 (262)
T TIGR02640        81 HNVVKLED---IVRQNW--VDNRLTLAVR-EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRV  154 (262)
T ss_pred             HHhhhhhc---ccceee--cCchHHHHHH-cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEE
Confidence            00000000   000000  0001111111 346899999998 566666666655321                135678


Q ss_pred             EEecCChHH------HhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          325 LITVTDPDL------LASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       325 ivTTR~~~v------~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      |+|+....-      ....  ......+.     ++..  +.++-.+++.++++
T Consensus       155 IaTsN~~~~~g~~~l~~aL--~~R~~~i~-----i~~P--~~~~e~~Il~~~~~  199 (262)
T TIGR02640       155 IFTSNPVEYAGVHETQDAL--LDRLITIF-----MDYP--DIDTETAILRAKTD  199 (262)
T ss_pred             EEeeCCccccceecccHHH--HhhcEEEE-----CCCC--CHHHHHHHHHHhhC
Confidence            888775311      1111  01223455     7777  77777777777654

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>TIGR00602 rad24 checkpoint protein rad24

Probab=97.41  E-value=0.0014  Score=68.18  Aligned_cols=45  Identities=16%  Similarity=0.107  Sum_probs=38.2

Q ss_pred             ccceecccHHHHHHHHhcCC---CCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEGP---SGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~---~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|-++.++++..++....   ....++.|+|++|+||||+++.++.
T Consensus        85 el~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~  132 (637)
T TIGR00602        85 ELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK  132 (637)
T ss_pred             HhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            89999999999999987542   2335789999999999999999987

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.40  E-value=0.0017  Score=56.70  Aligned_cols=117  Identities=15%  Similarity=0.159  Sum_probs=64.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCc-cc--cc---ccC--eeEEEEeCCCCCHHHHHHHHHHHhCCCCC-CccccCc---
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNND-HV--KF---YFD--CLAWVRVSIAYDFGKMLDDIIKSVMPPSR-VSVIIGE---  276 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~-~~--~~---~F~--~~~wv~vs~~~~~~~i~~~i~~~l~~~~~-~~~~~~~---  276 (394)
                      -.+++|+|+.|+|||||.+.+..+. ++  ..   .|.  ...|+  .+        .+.++.++.... .......   
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg   90 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG   90 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence            3588999999999999999886421 11  11   111  12232  11        456666664321 1111222   


Q ss_pred             CHHHHHHHHHHHccCC--eEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhh
Q 016120          277 DYQLKKSILRDYLTNK--KYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLAS  336 (394)
Q Consensus       277 ~~~~~~~~l~~~l~~k--r~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~  336 (394)
                      ...+.. .+...+-.+  +=+++||+--.  +....+.+...+... ..|..||++|.+.+....
T Consensus        91 Gq~qrl-~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~  154 (176)
T cd03238          91 GELQRV-KLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS  154 (176)
T ss_pred             HHHHHH-HHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence            222233 333444445  67888899866  444444444444321 246678899998876543

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.40  E-value=0.0012  Score=70.38  Aligned_cols=157  Identities=15%  Similarity=0.112  Sum_probs=85.4

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc---ccccc-cCeeEEEEeCCCCCHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND---HVKFY-FDCLAWVRVSIAYDFGKMLDDIIK  262 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~-F~~~~wv~vs~~~~~~~i~~~i~~  262 (394)
                      .++||+.++.++++.|....  ..-+.++|++|+|||++|+.++..-   .+... .++.+|..     +...    ++ 
T Consensus       187 ~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----ll-  254 (758)
T PRK11034        187 PLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LL-  254 (758)
T ss_pred             cCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hh-
Confidence            68999999999999887743  2334579999999999999998631   11111 24455531     1111    11 


Q ss_pred             HhCCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC-----C----chhHHHHHhhCCCCCCCcEEEEecCChH
Q 016120          263 SVMPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-----N----SEIWSDLEELLPDDENGSRVLITVTDPD  332 (394)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~-----~----~~~~~~l~~~l~~~~~gs~IivTTR~~~  332 (394)
                        .+..     +..+.+.....+.+.+ +.++.+|++|++..     .    ..+...+..++...+ .-+||-+|..+.
T Consensus       255 --aG~~-----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E  326 (758)
T PRK11034        255 --AGTK-----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQE  326 (758)
T ss_pred             --cccc-----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHH
Confidence              1110     0112233333333333 34678999999974     0    112222333322221 234444444433


Q ss_pred             HHhhch----hcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          333 LLASLE----MENGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       333 v~~~~~----~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                      ......    ....-..+.     ++++  +.++...+++..
T Consensus       327 ~~~~~~~D~AL~rRFq~I~-----v~eP--s~~~~~~IL~~~  361 (758)
T PRK11034        327 FSNIFEKDRALARRFQKID-----ITEP--SIEETVQIINGL  361 (758)
T ss_pred             HHHHhhccHHHHhhCcEEE-----eCCC--CHHHHHHHHHHH
Confidence            221110    011234677     9999  999999999864

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.00039  Score=72.98  Aligned_cols=120  Identities=16%  Similarity=0.234  Sum_probs=74.8

Q ss_pred             ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD  259 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~  259 (394)
                      .++|.+..++.+.+.+...       +....+...+|+.|||||.||+.+...  .-+.=+.-+-+++|.-.. +   ..
T Consensus       492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~E-k---Hs  565 (786)
T COG0542         492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYME-K---HS  565 (786)
T ss_pred             ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHH-H---HH
Confidence            7899999999998888642       345678888999999999999888762  211112233333333211 1   22


Q ss_pred             HHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeE-EEEEeCCCC-CchhHHHHHhhCCCC
Q 016120          260 IIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKY-FIVLDDVFD-NSEIWSDLEELLPDD  318 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~-~~~~~~~l~~~l~~~  318 (394)
                      +-.-+|.+..+   +  ..++ -..|.+..+.++| +|.||+|.. .++.++-+...|-++
T Consensus       566 VSrLIGaPPGY---V--Gyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG  620 (786)
T COG0542         566 VSRLIGAPPGY---V--GYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG  620 (786)
T ss_pred             HHHHhCCCCCC---c--eecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence            33334444331   1  1222 3345556667777 778999998 677888887777654

>PRK09183 transposase/IS protein; Provisional

Probab=97.39  E-value=0.00038  Score=64.85  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+.|+|++|+|||+||..+.+
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~  124 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGY  124 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            4567999999999999999976

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=97.35  E-value=0.0021  Score=61.64  Aligned_cols=138  Identities=10%  Similarity=0.107  Sum_probs=81.0

Q ss_pred             cceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc-------------------ccCeeEEEEeC
Q 016120          188 INEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF-------------------YFDCLAWVRVS  248 (394)
Q Consensus       188 ~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~~wv~vs  248 (394)
                      ++|-+....++..+....+.....+.++|++|+||||+|..+.+..--..                   ..+....++.+
T Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s   82 (325)
T COG0470           3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS   82 (325)
T ss_pred             cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence            56677778888888875543344588999999999999988876311000                   11223334333


Q ss_pred             CCCC---HHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEE
Q 016120          249 IAYD---FGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRV  324 (394)
Q Consensus       249 ~~~~---~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~I  324 (394)
                      ....   ..+..+++.+.......                    .++.-++++|++.. +.+.-..+...+-.....+.+
T Consensus        83 ~~~~~~i~~~~vr~~~~~~~~~~~--------------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~  142 (325)
T COG0470          83 DLRKIDIIVEQVRELAEFLSESPL--------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRF  142 (325)
T ss_pred             ccCCCcchHHHHHHHHHHhccCCC--------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEE
Confidence            3332   22223333322222110                    24677899999988 555556666666666667788


Q ss_pred             EEecCCh-HHHhhchhcCCCceee
Q 016120          325 LITVTDP-DLLASLEMENGEKIRR  347 (394)
Q Consensus       325 ivTTR~~-~v~~~~~~~~~~~~~~  347 (394)
                      |++|.++ .+....  .+....++
T Consensus       143 il~~n~~~~il~tI--~SRc~~i~  164 (325)
T COG0470         143 ILITNDPSKILPTI--RSRCQRIR  164 (325)
T ss_pred             EEEcCChhhccchh--hhcceeee
Confidence            8877743 444444  34455666

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=97.35  E-value=0.00032  Score=62.58  Aligned_cols=126  Identities=15%  Similarity=0.161  Sum_probs=63.1

Q ss_pred             ceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEe----CCCC--CHHH-------
Q 016120          189 NEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRV----SIAY--DFGK-------  255 (394)
Q Consensus       189 ~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v----s~~~--~~~~-------  255 (394)
                      ..++.+-...++.|..    ..++.+.|++|.|||.||.....+.-...+|+..+++.-    .+..  -+..       
T Consensus         3 ~p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p   78 (205)
T PF02562_consen    3 KPKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEP   78 (205)
T ss_dssp             ---SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------T
T ss_pred             cCCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHH
Confidence            4456666777888873    458899999999999999887765444467887777622    1111  0110       


Q ss_pred             ---HHHHHHHHhCCCCCCccccCcCHHHHHHH------HHHHccCC---eEEEEEeCCCC-CchhHHHHHhhCCCCCCCc
Q 016120          256 ---MLDDIIKSVMPPSRVSVIIGEDYQLKKSI------LRDYLTNK---KYFIVLDDVFD-NSEIWSDLEELLPDDENGS  322 (394)
Q Consensus       256 ---i~~~i~~~l~~~~~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs  322 (394)
                         -+.+.+..+....        ..+.+.+.      -..+++|+   ..++|+|+.++ +++++..+   +...+.||
T Consensus        79 ~~~p~~d~l~~~~~~~--------~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~s  147 (205)
T PF02562_consen   79 YLRPIYDALEELFGKE--------KLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGS  147 (205)
T ss_dssp             TTHHHHHHHTTTS-TT--------CHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-
T ss_pred             HHHHHHHHHHHHhChH--------hHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCc
Confidence               1111222211110        22222110      01234554   46999999998 56555555   44557799


Q ss_pred             EEEEecC
Q 016120          323 RVLITVT  329 (394)
Q Consensus       323 ~IivTTR  329 (394)
                      |||++=-
T Consensus       148 kii~~GD  154 (205)
T PF02562_consen  148 KIIITGD  154 (205)
T ss_dssp             EEEEEE-
T ss_pred             EEEEecC
Confidence            9998644

; GO: 0005524 ATP binding; PDB: 3B85_A.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.34  E-value=0.0016  Score=70.51  Aligned_cols=131  Identities=15%  Similarity=0.145  Sum_probs=75.4

Q ss_pred             ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD  259 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~  259 (394)
                      .++|.+..++.+.+.+...       +.....+.++|+.|+|||+||+.+.+  ..-..-...+-++.+.-.+...    
T Consensus       510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~----  583 (821)
T CHL00095        510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHT----  583 (821)
T ss_pred             cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhcccccc----
Confidence            7899999999998887532       22345677899999999999998876  2211112233344443222111    


Q ss_pred             HHHHhCCCCCCccccCc-CHHHHHHHHHHHccCCe-EEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEE
Q 016120          260 IIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTNKK-YFIVLDDVFD-NSEIWSDLEELLPDD-----------ENGSRVL  325 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~kr-~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~Ii  325 (394)
                      +...++.+..   ..+. ...    .+.+.++.++ .+++||++.. +++.++.+...+-.+           ...+-+|
T Consensus       584 ~~~l~g~~~g---yvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I  656 (821)
T CHL00095        584 VSKLIGSPPG---YVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLII  656 (821)
T ss_pred             HHHhcCCCCc---ccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEE
Confidence            1111222211   0111 222    2334444444 5889999988 777788887776543           2345566


Q ss_pred             EecCC
Q 016120          326 ITVTD  330 (394)
Q Consensus       326 vTTR~  330 (394)
                      +||..
T Consensus       657 ~Tsn~  661 (821)
T CHL00095        657 MTSNL  661 (821)
T ss_pred             EeCCc
Confidence            77664

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.33  E-value=0.00096  Score=65.42  Aligned_cols=173  Identities=11%  Similarity=0.046  Sum_probs=103.2

Q ss_pred             ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120          187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      .+.||+.++..+.+++...  ....+.+-|.|.+|.|||.+...++.+..-...=.++++++...--....++..|...+
T Consensus       151 ~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~  230 (529)
T KOG2227|consen  151 TLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSL  230 (529)
T ss_pred             CccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHH
Confidence            7999999999999998764  24567888999999999999999988532211112456665554445677777777776


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHccC--CeEEEEEeCCCC-CchhHHHHHhh--CCCCCCCcEEEE---------ecCC
Q 016120          265 MPPSRVSVIIGEDYQLKKSILRDYLTN--KKYFIVLDDVFD-NSEIWSDLEEL--LPDDENGSRVLI---------TVTD  330 (394)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~-~~~~~~~l~~~--l~~~~~gs~Iiv---------TTR~  330 (394)
                      .....    -..+..+.+..+..+..+  ..+|+|||.++. ....-.-+...  +|. -+++++|+         |-|.
T Consensus       231 ~q~~~----s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~-lp~sr~iLiGiANslDlTdR~  305 (529)
T KOG2227|consen  231 LQDLV----SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK-LPNSRIILIGIANSLDLTDRF  305 (529)
T ss_pred             HHHhc----CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc-CCcceeeeeeehhhhhHHHHH
Confidence            22111    011345666777777654  369999999876 11000111111  122 23444443         2221


Q ss_pred             hHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          331 PDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       331 ~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                        .....    ....+.-+.|+..|-  +.++..++|..+..
T Consensus       306 --LprL~----~~~~~~P~~l~F~PY--Tk~qI~~Il~~rl~  339 (529)
T KOG2227|consen  306 --LPRLN----LDLTIKPKLLVFPPY--TKDQIVEILQQRLS  339 (529)
T ss_pred             --hhhhh----hccCCCCceeeecCC--CHHHHHHHHHHHHh
Confidence              11111    111122233338899  99999999998854

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.33  E-value=0.00085  Score=64.55  Aligned_cols=101  Identities=11%  Similarity=0.150  Sum_probs=53.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHc
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL  289 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l  289 (394)
                      ..+.++|..|+|||.||..+++  .....-..++++++      ..++..+...-....       .+....   + +.+
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t~------~~l~~~l~~~~~~~~-------~~~~~~---~-~~l  244 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRTA------DELIEILREIRFNND-------KELEEV---Y-DLL  244 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEEH------HHHHHHHHHHHhccc-------hhHHHH---H-HHh
Confidence            5688999999999999999998  44333334566654      233333332111110       011111   2 222


Q ss_pred             cCCeEEEEEeCCCC-CchhH--HHHHhhCCCC-CCCcEEEEecCC
Q 016120          290 TNKKYFIVLDDVFD-NSEIW--SDLEELLPDD-ENGSRVLITVTD  330 (394)
Q Consensus       290 ~~kr~LlVlDdv~~-~~~~~--~~l~~~l~~~-~~gs~IivTTR~  330 (394)
                      . .-=||||||+.. ....|  ..+...+... .++..+||||..
T Consensus       245 ~-~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl  288 (329)
T PRK06835        245 I-NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL  288 (329)
T ss_pred             c-cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence            2 224899999966 22233  3333333221 234457888775

>COG3899 Predicted ATPase [General function prediction only]

Probab=97.32  E-value=0.0018  Score=70.13  Aligned_cols=45  Identities=16%  Similarity=0.139  Sum_probs=38.6

Q ss_pred             ccceecccHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEG-PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++||+.+++.|...+..- .....++.+.|.+|||||+|++.|..
T Consensus         1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~   46 (849)
T COG3899           1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK   46 (849)
T ss_pred             CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH
Confidence            4789999999999988654 33466999999999999999999987

>PHA00729 NTP-binding motif containing protein

Probab=97.31  E-value=0.0022  Score=57.99  Aligned_cols=33  Identities=15%  Similarity=0.293  Sum_probs=25.5

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ++++.+...  +...+.|.|.+|+||||||..+.+
T Consensus         7 ~~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~   39 (226)
T PHA00729          7 KIVSAYNNN--GFVSAVIFGKQGSGKTTYALKVAR   39 (226)
T ss_pred             HHHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHH
Confidence            344445443  356788999999999999999987

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.25  E-value=0.0015  Score=59.47  Aligned_cols=92  Identities=10%  Similarity=-0.003  Sum_probs=52.8

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH----hCCCCCCccccCc-CHHHH
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS----VMPPSRVSVIIGE-DYQLK  281 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~----l~~~~~~~~~~~~-~~~~~  281 (394)
                      +.-.++.|+|.+|+|||++|.+++..  ....-..++|++.. .++...+. +++..    +..........+. +....
T Consensus        21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (225)
T PRK09361         21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA   96 (225)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence            34568999999999999999888763  32334567899876 55554432 33332    0000000000111 22233


Q ss_pred             HHHHHHHccCCeEEEEEeCCC
Q 016120          282 KSILRDYLTNKKYFIVLDDVF  302 (394)
Q Consensus       282 ~~~l~~~l~~kr~LlVlDdv~  302 (394)
                      ...+...++.+.-++|+|.+.
T Consensus        97 i~~~~~~~~~~~~lvVIDsi~  117 (225)
T PRK09361         97 IRKAEKLAKENVGLIVLDSAT  117 (225)
T ss_pred             HHHHHHHHHhcccEEEEeCcH
Confidence            344444444667799999984

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.24  E-value=0.0034  Score=52.93  Aligned_cols=106  Identities=13%  Similarity=0.104  Sum_probs=59.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY  288 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~  288 (394)
                      -.+++|+|..|.|||||++.+..-.   ......+|+.-..             .++-..    .++.... ..-.+...
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~----~lS~G~~-~rv~lara   84 (144)
T cd03221          26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFE----QLSGGEK-MRLALAKL   84 (144)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEc----cCCHHHH-HHHHHHHH
Confidence            3588999999999999999998732   1223334432100             000000    0111222 22334445


Q ss_pred             ccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          289 LTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       289 l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +..++-++++|+--.  +......+...+...  +..||++|.+.+.....
T Consensus        85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~  133 (144)
T cd03221          85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV  133 (144)
T ss_pred             HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh
Confidence            555677899999876  455555555554432  24688888887666544

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=97.23  E-value=0.0041  Score=61.02  Aligned_cols=134  Identities=14%  Similarity=0.115  Sum_probs=81.1

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD  287 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~  287 (394)
                      ....+-|+|..|.|||.|++.+.|  ....+......++++    ......+++..+...             -.+..++
T Consensus       112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~-------------~~~~Fk~  172 (408)
T COG0593         112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDN-------------EMEKFKE  172 (408)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhh-------------hHHHHHH
Confidence            467888999999999999999999  566655533333332    233334444333221             1223333


Q ss_pred             HccCCeEEEEEeCCCC--CchhHH-HHHhhCCC-CCCCcEEEEecCCh---------HHHhhchhcCCCceeeCCccCCC
Q 016120          288 YLTNKKYFIVLDDVFD--NSEIWS-DLEELLPD-DENGSRVLITVTDP---------DLLASLEMENGEKIRRDSVLFGG  354 (394)
Q Consensus       288 ~l~~kr~LlVlDdv~~--~~~~~~-~l~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~~~~~~~~~l~  354 (394)
                      ..  .-=++++||++-  ..+.|. .+...|.. ...|..||+|++..         .+...+   ...-++.     ++
T Consensus       173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~---~~Gl~~~-----I~  242 (408)
T COG0593         173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRL---EWGLVVE-----IE  242 (408)
T ss_pred             hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHH---hceeEEe-----eC
Confidence            33  233889999987  222332 22222221 12344899998652         344444   4567888     99


Q ss_pred             CCCCChHHHHHHHHHHhC
Q 016120          355 PLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       355 ~L~~~~~~~~~Lf~~~~~  372 (394)
                      |.  +.+....++.+++.
T Consensus       243 ~P--d~e~r~aiL~kka~  258 (408)
T COG0593         243 PP--DDETRLAILRKKAE  258 (408)
T ss_pred             CC--CHHHHHHHHHHHHH
Confidence            99  99999999988743

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.23  E-value=0.0016  Score=56.17  Aligned_cols=117  Identities=11%  Similarity=-0.017  Sum_probs=63.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC--CCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI--AYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD  287 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~  287 (394)
                      .+++|+|..|+|||||.+.++.-   .......+++.-..  ..+......   ..++-..    .++ .-+...-.+..
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~G~---~~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~----qLS-~G~~qrl~lar   95 (163)
T cd03216          27 EVHALLGENGAGKSTLMKILSGL---YKPDSGEILVDGKEVSFASPRDARR---AGIAMVY----QLS-VGERQMVEIAR   95 (163)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC---CCCCCeEEEECCEECCcCCHHHHHh---cCeEEEE----ecC-HHHHHHHHHHH
Confidence            48899999999999999999863   22334445542111  111111110   0111000    011 12222333444


Q ss_pred             HccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          288 YLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       288 ~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      .+-.++-+++||+--.  +......+...+... .+|..||++|.+.......
T Consensus        96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~  148 (163)
T cd03216          96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI  148 (163)
T ss_pred             HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            5556678889999876  444445554444322 3366788888887654443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK06921 hypothetical protein; Provisional

Probab=97.23  E-value=0.0013  Score=61.40  Aligned_cols=37  Identities=16%  Similarity=0.081  Sum_probs=27.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccc-cCeeEEEEe
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFY-FDCLAWVRV  247 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~v  247 (394)
                      ...+.++|..|+|||+||..+++  ..... -..+++++.
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~  154 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF  154 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence            45688999999999999999998  44433 334566653

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.23  E-value=0.0024  Score=54.15  Aligned_cols=40  Identities=10%  Similarity=0.165  Sum_probs=29.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCC
Q 016120          211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYD  252 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~  252 (394)
                      ++.|+|.+|+||||++..+..  .....-..++|++......
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~~   40 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEIE   40 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcchH
Confidence            367899999999999999987  3333345677887765543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=97.22  E-value=0.00023  Score=62.43  Aligned_cols=73  Identities=16%  Similarity=0.172  Sum_probs=40.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY  288 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~  288 (394)
                      ..-+.++|..|+|||.||..+.+.  ...+=..+.|++      ..+++..+-..    ..     +........    .
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~------~~~L~~~l~~~----~~-----~~~~~~~~~----~  105 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFIT------ASDLLDELKQS----RS-----DGSYEELLK----R  105 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEE------HHHHHHHHHCC----HC-----CTTHCHHHH----H
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEee------cCceecccccc----cc-----ccchhhhcC----c
Confidence            356889999999999999999873  322222345664      34444444321    11     112222222    2


Q ss_pred             ccCCeEEEEEeCCCC
Q 016120          289 LTNKKYFIVLDDVFD  303 (394)
Q Consensus       289 l~~kr~LlVlDdv~~  303 (394)
                      +. +-=||||||+..
T Consensus       106 l~-~~dlLilDDlG~  119 (178)
T PF01695_consen  106 LK-RVDLLILDDLGY  119 (178)
T ss_dssp             HH-TSSCEEEETCTS
T ss_pred             cc-cccEecccccce
Confidence            22 335788999977

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.21  E-value=0.0036  Score=54.70  Aligned_cols=113  Identities=10%  Similarity=-0.001  Sum_probs=60.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEE-----------------eCCCCC--HHHHHHHHHHHhCCCCCC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVR-----------------VSIAYD--FGKMLDDIIKSVMPPSRV  270 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~-----------------vs~~~~--~~~i~~~i~~~l~~~~~~  270 (394)
                      .+++|+|..|+|||||++.+..-..   .-...+++.                 +.+.+.  ...+...+    ..    
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i----~~----   97 (178)
T cd03247          29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL----GR----   97 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh----cc----
Confidence            5789999999999999999986321   112222221                 111111  01111111    00    


Q ss_pred             ccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhh
Q 016120          271 SVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLAS  336 (394)
Q Consensus       271 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~  336 (394)
                        .++ .-+...-.+...+-.++=+++||+...  +....+.+...+....++..||++|.+......
T Consensus        98 --~LS-~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~  162 (178)
T cd03247          98 --RFS-GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH  162 (178)
T ss_pred             --cCC-HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence              011 112222334444556778899999887  444444444443322236678888888876653

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.21  E-value=0.0017  Score=59.28  Aligned_cols=96  Identities=9%  Similarity=0.030  Sum_probs=57.6

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccccc----cCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc-------cccC
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFY----FDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS-------VIIG  275 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-------~~~~  275 (394)
                      +.-.++.|+|.+|+|||+||.+++........    -..++|++....++..++ .++++..+......       ...+
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~   95 (235)
T cd01123          17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYN   95 (235)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCC
Confidence            34578899999999999999988753222221    357889988877765544 33444433221100       0011


Q ss_pred             c-CHHHHHHHHHHHcc-C-CeEEEEEeCCCC
Q 016120          276 E-DYQLKKSILRDYLT-N-KKYFIVLDDVFD  303 (394)
Q Consensus       276 ~-~~~~~~~~l~~~l~-~-kr~LlVlDdv~~  303 (394)
                      . +.......+.+.+. . +.-|+|+|.+..
T Consensus        96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~  126 (235)
T cd01123          96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA  126 (235)
T ss_pred             HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence            1 23334455555553 3 678999999864

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=97.21  E-value=0.0032  Score=57.38  Aligned_cols=101  Identities=23%  Similarity=0.282  Sum_probs=61.8

Q ss_pred             ccceecccHHHHHHHH---hcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLL---IEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      +++|.+..++.|++=.   ..+. ...-+-++|..|+|||++++.+.+  +....=  .--|.|++..            
T Consensus        28 ~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~--~y~~~G--LRlIev~k~~------------   90 (249)
T PF05673_consen   28 DLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLN--EYADQG--LRLIEVSKED------------   90 (249)
T ss_pred             HhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHH--HHhhcC--ceEEEECHHH------------
Confidence            8999998888886543   2222 345566899999999999999987  222211  1122322210            


Q ss_pred             hCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC
Q 016120          264 VMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD  317 (394)
Q Consensus       264 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~  317 (394)
                                +. +...+.+.++.  ...||+|.+||+.=  +...+..++..|-.
T Consensus        91 ----------L~-~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG  133 (249)
T PF05673_consen   91 ----------LG-DLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEG  133 (249)
T ss_pred             ----------hc-cHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcC
Confidence                      00 33333333331  34799999999864  35566777766653

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.20  E-value=0.0018  Score=58.11  Aligned_cols=93  Identities=9%  Similarity=0.011  Sum_probs=55.1

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHh-CCCCCC---ccccCc-CHHHH
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV-MPPSRV---SVIIGE-DYQLK  281 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l-~~~~~~---~~~~~~-~~~~~  281 (394)
                      +.-.++.|+|.+|+|||+++..+...  ....-..++|++... ++...+.+ ++... ......   ....+. +....
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~   85 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA   85 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence            34678999999999999999888763  333346788998865 66555443 33322 000000   000111 22333


Q ss_pred             HHHHHHHccC-CeEEEEEeCCCC
Q 016120          282 KSILRDYLTN-KKYFIVLDDVFD  303 (394)
Q Consensus       282 ~~~l~~~l~~-kr~LlVlDdv~~  303 (394)
                      ...+.+.+.. +.-++|+|.+..
T Consensus        86 ~~~l~~~~~~~~~~lvVIDSis~  108 (209)
T TIGR02237        86 IQKTSKFIDRDSASLVVVDSFTA  108 (209)
T ss_pred             HHHHHHHHhhcCccEEEEeCcHH
Confidence            5555555543 566999999864

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.19  E-value=0.0061  Score=52.70  Aligned_cols=116  Identities=18%  Similarity=0.143  Sum_probs=60.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCccc-ccc--cC---eeEEEEeCCCCC--HHHHHHHHHHHhCCCCCCccccCcCHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHV-KFY--FD---CLAWVRVSIAYD--FGKMLDDIIKSVMPPSRVSVIIGEDYQL  280 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~---~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~~  280 (394)
                      -.+++|+|..|.|||||++.+..-... ...  ++   ...+  +.+...  ...+...+.-.  .. .   .++....+
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~--~~-~---~LS~G~~~   98 (166)
T cd03223          27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP--WD-D---VLSGGEQQ   98 (166)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc--CC-C---CCCHHHHH
Confidence            348899999999999999999873211 110  11   1122  222221  12233333210  11 0   12223333


Q ss_pred             HHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHh
Q 016120          281 KKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLA  335 (394)
Q Consensus       281 ~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~  335 (394)
                       .-.+...+-.++=+++||+--.  +......+...+...  +..||++|.+.....
T Consensus        99 -rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~  152 (166)
T cd03223          99 -RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK  152 (166)
T ss_pred             -HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence             3334444556677889998776  444444444444332  356888888876654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.18  E-value=0.00058  Score=60.93  Aligned_cols=113  Identities=15%  Similarity=0.108  Sum_probs=63.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHH-HHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFG-KMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY  288 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~  288 (394)
                      +++.|+|+.|+||||++..+..  ....+....+++- ..+.... .-...++.+.        +...+.....+.++..
T Consensus         2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~--------~vg~~~~~~~~~i~~a   70 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTI-EDPIEFVHESKRSLINQR--------EVGLDTLSFENALKAA   70 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEE-cCCccccccCccceeeec--------ccCCCccCHHHHHHHH
Confidence            4788999999999999998776  3333333444431 1111100 0000011000        0111223345566777


Q ss_pred             ccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          289 LTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       289 l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+=.+++|++.+ .+.+.......   ..|..++.|+-..++....
T Consensus        71 Lr~~pd~ii~gEird-~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~~  115 (198)
T cd01131          71 LRQDPDVILVGEMRD-LETIRLALTAA---ETGHLVMSTLHTNSAAKTI  115 (198)
T ss_pred             hcCCcCEEEEcCCCC-HHHHHHHHHHH---HcCCEEEEEecCCcHHHHH
Confidence            766677999999988 65555443332   3466688888877766544

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.17  E-value=0.00057  Score=57.20  Aligned_cols=21  Identities=10%  Similarity=0.226  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +|.++|++|+||||+|+.+..
T Consensus         1 lii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999985

...

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.15  E-value=0.0046  Score=55.64  Aligned_cols=53  Identities=25%  Similarity=0.404  Sum_probs=32.4

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+..++=+++||+--.  +......+...+..- ..|..||++|.+.+.....
T Consensus       143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~  198 (213)
T cd03235         143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEY  198 (213)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            3334455677899999876  444444444444321 2466788888887665544

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG3903 Predicted ATPase [General function prediction only]

Probab=97.13  E-value=0.00018  Score=69.53  Aligned_cols=140  Identities=16%  Similarity=0.123  Sum_probs=91.1

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCC-CHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAY-DFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR  286 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~  286 (394)
                      ..+.+.++|.|||||||++-.+.+   +...|....|..--.+. +...+.-.+...++....       +-+.....+.
T Consensus        13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-------~g~~~~~~~~   82 (414)
T COG3903          13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-------PGDSAVDTLV   82 (414)
T ss_pred             hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-------cchHHHHHHH
Confidence            368899999999999999998877   56678766655444444 444444444444555432       3344556677


Q ss_pred             HHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcCCCceeeCCccCCCCCCCCh-HHHHH
Q 016120          287 DYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLK-HEAWQ  365 (394)
Q Consensus       287 ~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~-~~~~~  365 (394)
                      ....++|.++|+||..+-...-..+...+-.++..-.|+.|+|.....      .+...+.     +++|  +. +++.+
T Consensus        83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~------~ge~~~~-----~~~L--~~~d~a~~  149 (414)
T COG3903          83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV------AGEVHRR-----VPSL--SLFDEAIE  149 (414)
T ss_pred             HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc------ccccccc-----CCcc--ccCCchhH
Confidence            777889999999998661111122333444455556788899875421      2456677     8888  54 47888


Q ss_pred             HHHHH
Q 016120          366 FFILH  370 (394)
Q Consensus       366 Lf~~~  370 (394)
                      +|...
T Consensus       150 lf~~r  154 (414)
T COG3903         150 LFVCR  154 (414)
T ss_pred             HHHHH
Confidence            88665

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.12  E-value=0.0027  Score=67.65  Aligned_cols=116  Identities=14%  Similarity=0.195  Sum_probs=67.5

Q ss_pred             ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD  259 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~  259 (394)
                      .++|.++.++.+.+.+...       +.....+.++|+.|+|||++|+.+...  ...   ..+.++.+.-....    .
T Consensus       459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~----~  529 (758)
T PRK11034        459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERH----T  529 (758)
T ss_pred             eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhcccc----c
Confidence            5789999999888888631       223557889999999999999999873  322   22344443322111    1


Q ss_pred             HHHHhCCCCCCccccCcCHHHHHHHHHHHccC-CeEEEEEeCCCC-CchhHHHHHhhCCC
Q 016120          260 IIKSVMPPSRVSVIIGEDYQLKKSILRDYLTN-KKYFIVLDDVFD-NSEIWSDLEELLPD  317 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~-~~~~~~~l~~~l~~  317 (394)
                      +..-++.+..   ....+.   ...+.+.++. ...+|+||++.. +++.++.+...+..
T Consensus       530 ~~~LiG~~~g---yvg~~~---~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~  583 (758)
T PRK11034        530 VSRLIGAPPG---YVGFDQ---GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDN  583 (758)
T ss_pred             HHHHcCCCCC---cccccc---cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhc
Confidence            2222232211   011111   1122333332 346999999998 67777777766643

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.12  E-value=0.0045  Score=54.16  Aligned_cols=104  Identities=14%  Similarity=0.041  Sum_probs=58.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEE------eCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVR------VSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKK  282 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~  282 (394)
                      -.+++|+|..|+|||||.+.+..-.   ......+++.      +.+...                     ++....+ .
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~---------------------LSgGq~q-r   79 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID---------------------LSGGELQ-R   79 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC---------------------CCHHHHH-H
Confidence            3589999999999999999998631   1122223221      111111                     1112222 3


Q ss_pred             HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      -.+...+..++-+++||+--.  +......+...+...  ..+..||++|.+.......
T Consensus        80 v~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~  138 (177)
T cd03222          80 VAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL  138 (177)
T ss_pred             HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh
Confidence            334445556677899999876  344444444333321  2235688888887665544

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.0022  Score=64.90  Aligned_cols=93  Identities=17%  Similarity=0.258  Sum_probs=63.7

Q ss_pred             ccceecccHHHHHHHHhcC---C-------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120          187 DINEFERGREELFDLLIEG---P-------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~---~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  256 (394)
                      ++-|.+..+.++.+++..-   +       ...+=+.++|++|+|||.||+.+.+  +..-.|     +.++..      
T Consensus       191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isAp------  257 (802)
T KOG0733|consen  191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISAP------  257 (802)
T ss_pred             hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecch------
Confidence            8889999998888877542   1       2345567999999999999999999  444333     233222      


Q ss_pred             HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC
Q 016120          257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD  303 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~  303 (394)
                        +|+....+.         +.+.+.+...+.-..-++++.+|++.-
T Consensus       258 --eivSGvSGE---------SEkkiRelF~~A~~~aPcivFiDeIDA  293 (802)
T KOG0733|consen  258 --EIVSGVSGE---------SEKKIRELFDQAKSNAPCIVFIDEIDA  293 (802)
T ss_pred             --hhhcccCcc---------cHHHHHHHHHHHhccCCeEEEeecccc
Confidence              233332222         555566666666667899999999976

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.07  E-value=0.00041  Score=56.34  Aligned_cols=21  Identities=19%  Similarity=0.309  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +|.|.|++|+||||+|+.+..
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999987

...

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.07  E-value=0.0045  Score=66.37  Aligned_cols=156  Identities=17%  Similarity=0.225  Sum_probs=84.0

Q ss_pred             ccceecccHHHHHHHHhcC--------C---CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIEG--------P---SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~--------~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|.+..++++.+.+...        .   ...+-+.++|++|+|||+||+.+++  ....+|     +.++..    .
T Consensus       179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~--~~~~~~-----i~i~~~----~  247 (733)
T TIGR01243       179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN--EAGAYF-----ISINGP----E  247 (733)
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH--HhCCeE-----EEEecH----H
Confidence            7899999999988876421        0   2235677999999999999999988  333332     222211    1


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C-----------chhHHHHHhhCCCC-CCCc
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N-----------SEIWSDLEELLPDD-ENGS  322 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~-----------~~~~~~l~~~l~~~-~~gs  322 (394)
                      +    .....         ......+...+.......+.+|+||++.. .           ......+...+... ..+.
T Consensus       248 i----~~~~~---------g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~  314 (733)
T TIGR01243       248 I----MSKYY---------GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR  314 (733)
T ss_pred             H----hcccc---------cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence            1    11000         11223344444444456678999999864 0           01122333333221 2233


Q ss_pred             EEEE-ecCChH-HHhhchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120          323 RVLI-TVTDPD-LLASLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       323 ~Iiv-TTR~~~-v~~~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~  373 (394)
                      .++| ||..++ +...+.. ..-...+.     ++..  +.++-.+++......
T Consensus       315 vivI~atn~~~~ld~al~r~gRfd~~i~-----i~~P--~~~~R~~Il~~~~~~  361 (733)
T TIGR01243       315 VIVIGATNRPDALDPALRRPGRFDREIV-----IRVP--DKRARKEILKVHTRN  361 (733)
T ss_pred             EEEEeecCChhhcCHHHhCchhccEEEE-----eCCc--CHHHHHHHHHHHhcC
Confidence            4444 444432 2111100 01234566     8878  888888888766443

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK04296 thymidine kinase; Provisional

Probab=97.07  E-value=0.0014  Score=58.16  Aligned_cols=111  Identities=14%  Similarity=0.002  Sum_probs=62.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDY  288 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~  288 (394)
                      .++.|+|..|.||||+|..+..  +...+-..++.+.  ..++.......++++++....   .... ....+...+.+ 
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~---~~~~~~~~~~~~~~~~-   74 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSRE---AIPVSSDTDIFELIEE-   74 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCccc---ceEeCChHHHHHHHHh-
Confidence            3667899999999999988877  3333333333332  122222223345555553221   1111 34455555555 


Q ss_pred             ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC
Q 016120          289 LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD  330 (394)
Q Consensus       289 l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~  330 (394)
                      ..++.-+||+|.+.- +.++...+...+  ...|..||+|.++
T Consensus        75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~  115 (190)
T PRK04296         75 EGEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLD  115 (190)
T ss_pred             hCCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecC
Confidence            333455899999976 233233333332  2457789999998

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.05  E-value=0.0055  Score=55.58  Aligned_cols=94  Identities=10%  Similarity=0.082  Sum_probs=56.5

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCccccccc------CeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC----ccccCc
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYF------DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV----SVIIGE  276 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----~~~~~~  276 (394)
                      +.-.++.|+|.+|+|||+||..+...  ....-      ..++|++....++...+. ++....+.....    ..-...
T Consensus        17 ~~g~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~   93 (226)
T cd01393          17 PTGRITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP   93 (226)
T ss_pred             cCCcEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence            34568999999999999999988752  22222      456899887777765543 334433221100    000111


Q ss_pred             -CHHHHHHHHHHHcc----CCeEEEEEeCCCC
Q 016120          277 -DYQLKKSILRDYLT----NKKYFIVLDDVFD  303 (394)
Q Consensus       277 -~~~~~~~~l~~~l~----~kr~LlVlDdv~~  303 (394)
                       +.+++...+....+    .+.-|+|+|.+..
T Consensus        94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~  125 (226)
T cd01393          94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVAA  125 (226)
T ss_pred             CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence             45555555555543    3556999999864

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.05  E-value=0.00098  Score=60.21  Aligned_cols=123  Identities=13%  Similarity=0.135  Sum_probs=62.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY  288 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~  288 (394)
                      .+++.|+|+.|.||||+.+.+...... .  +...|+.... .. ...+.++...++.........+ +...-..++...
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a--~~G~~v~a~~-~~-~~~~d~i~~~l~~~~si~~~~S-~f~~el~~l~~~  102 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVALIVFL-A--HIGSFVPADS-AT-IGLVDKIFTRMSSRESVSSGQS-AFMIDLYQVSKA  102 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHHHH-H--hCCCeeEcCC-cE-EeeeeeeeeeeCCccChhhccc-hHHHHHHHHHHH
Confidence            378889999999999999988632111 1  1111221111 10 0122223333332221111111 222222333333


Q ss_pred             c--cCCeEEEEEeCCCC--CchhHH----HHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          289 L--TNKKYFIVLDDVFD--NSEIWS----DLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       289 l--~~kr~LlVlDdv~~--~~~~~~----~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +  ..++-|++||....  +..+..    .+...+... ..+..+|+||.+.+++...
T Consensus       103 l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~  160 (213)
T cd03281         103 LRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS  160 (213)
T ss_pred             HHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence            2  46789999999987  332211    122233222 3345799999999888776

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.04  E-value=0.0079  Score=54.37  Aligned_cols=53  Identities=17%  Similarity=0.232  Sum_probs=33.1

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+++||+--.  +....+.+...+..-..+..||++|.+.......
T Consensus       144 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~  198 (220)
T cd03263         144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEAL  198 (220)
T ss_pred             HHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence            3444556778899999877  4444455544443322245688888888766544

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.013  Score=55.83  Aligned_cols=170  Identities=17%  Similarity=0.233  Sum_probs=96.9

Q ss_pred             ccceecccHHHHHHHHhcC----C-------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIEG----P-------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~----~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++-|-++.+++|.+.+.-.    +       ..++=|.++|++|.|||-||++|+|  +....|     +.|...     
T Consensus       152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS-----  219 (406)
T COG1222         152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS-----  219 (406)
T ss_pred             hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH-----
Confidence            7888999999988877432    1       3455667999999999999999999  565555     322221     


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHcc-CCeEEEEEeCCCC------------CchhHHHHHhhCC-----C
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLT-NKKYFIVLDDVFD------------NSEIWSDLEELLP-----D  317 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~------------~~~~~~~l~~~l~-----~  317 (394)
                         ++++..-+          .-..+...+.+.-+ ..++.|.+|.++.            +.+.-..+...|.     +
T Consensus       220 ---ElVqKYiG----------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD  286 (406)
T COG1222         220 ---ELVQKYIG----------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD  286 (406)
T ss_pred             ---HHHHHHhc----------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence               12222111          12234445555554 3689999999864            1112222222222     1


Q ss_pred             CCCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHH-HHHHHHhCCCCCCCCcCCCchhhhh
Q 016120          318 DENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAW-QFFILHYGSMPLENYLQGEAIPTVG  389 (394)
Q Consensus       318 ~~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~-~Lf~~~~~~~~~~~~~~~~~~~~vg  389 (394)
                      ....-|||..|-..++....=..  .-++.++     ++ |  ++.+.. +.|+=+....+....-..+.+..+.
T Consensus       287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIE-----fp-l--Pd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~  353 (406)
T COG1222         287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIE-----FP-L--PDEEGRAEILKIHTRKMNLADDVDLELLARLT  353 (406)
T ss_pred             CCCCeEEEEecCCccccChhhcCCCcccceee-----cC-C--CCHHHHHHHHHHHhhhccCccCcCHHHHHHhc
Confidence            13346888877766554322111  2245555     65 5  555555 5565556666666655555554443

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.03  E-value=0.0043  Score=53.88  Aligned_cols=121  Identities=15%  Similarity=0.102  Sum_probs=60.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC--CCCHHHHHHHHHHHhC--CCCCCc------cc-cCcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI--AYDFGKMLDDIIKSVM--PPSRVS------VI-IGED  277 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~--~~~~~~------~~-~~~~  277 (394)
                      -.+++|+|..|.|||||.+.++.-  .. .....+++.-..  .......    ...++  .+....      .+ ++ .
T Consensus        28 G~~~~l~G~nGsGKstLl~~i~G~--~~-~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS-~   99 (171)
T cd03228          28 GEKVAIVGPSGSGKSTLLKLLLRL--YD-PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILS-G   99 (171)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcC--CC-CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhC-H
Confidence            358899999999999999999873  11 223333331100  0011110    01111  000000      00 01 1


Q ss_pred             HHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          278 YQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       278 ~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      -+...-.+...+..++-+++||+-..  +......+...+.....+..||++|.+......+
T Consensus       100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~  161 (171)
T cd03228         100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDA  161 (171)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhC
Confidence            11122234445556778999999876  4444444444443222356788888887665543

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=97.02  E-value=0.0024  Score=59.54  Aligned_cols=159  Identities=15%  Similarity=0.099  Sum_probs=96.6

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEE-EEeCCCCCHHHHHHHHHHHhC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAW-VRVSIAYDFGKMLDDIIKSVM  265 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~i~~~i~~~l~  265 (394)
                      ++.|.+..+.-+.+.+...  ..+....+|++|.|||+-|..+....--.+-|.+++- .|+|..-...-+-..+     
T Consensus        37 e~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki-----  109 (346)
T KOG0989|consen   37 ELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI-----  109 (346)
T ss_pred             hhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh-----
Confidence            8899999999999988873  4778889999999999988777653222345665542 3444432211000000     


Q ss_pred             CCCCCccccCcCHHHHHHHHHHHc--cCCe-EEEEEeCCCC-CchhHHHHHhhCCCCCCCcE-EEEecCChHHHhhchhc
Q 016120          266 PPSRVSVIIGEDYQLKKSILRDYL--TNKK-YFIVLDDVFD-NSEIWSDLEELLPDDENGSR-VLITVTDPDLLASLEME  340 (394)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~-IivTTR~~~v~~~~~~~  340 (394)
                               . +...+........  ..++ -.+|||++.. ..+.|..+...+-+-...++ |+||+--..+...+  .
T Consensus       110 ---------k-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi--~  177 (346)
T KOG0989|consen  110 ---------K-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL--V  177 (346)
T ss_pred             ---------c-CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH--H
Confidence                     0 2222222221111  1134 3788999998 77899999888766555566 44554444333333  1


Q ss_pred             CCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          341 NGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       341 ~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      +...-++     .++|  .+++...-++..+
T Consensus       178 SRC~Kfr-----Fk~L--~d~~iv~rL~~Ia  201 (346)
T KOG0989|consen  178 SRCQKFR-----FKKL--KDEDIVDRLEKIA  201 (346)
T ss_pred             hhHHHhc-----CCCc--chHHHHHHHHHHH
Confidence            2344567     8899  8888877777664

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=97.02  E-value=0.0068  Score=56.01  Aligned_cols=128  Identities=14%  Similarity=0.121  Sum_probs=66.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCccc-cc--ccC--eeEEEEeC----CCCCHHHHH--------------HHHHHHhCC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHV-KF--YFD--CLAWVRVS----IAYDFGKML--------------DDIIKSVMP  266 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~--~~~wv~vs----~~~~~~~i~--------------~~i~~~l~~  266 (394)
                      .+++|+|..|+|||||++.+.....- ..  .++  .+.++.-.    ...++.+.+              .++++.++.
T Consensus        26 e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l  105 (246)
T cd03237          26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQI  105 (246)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCC
Confidence            58999999999999999999864211 01  111  11222111    011222221              223333333


Q ss_pred             CCCCccccCc-CHHH-HHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          267 PSRVSVIIGE-DYQL-KKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       267 ~~~~~~~~~~-~~~~-~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      .......... +..+ ..-.+...|..++=+++||.--.  +...-..+...+..-  ..|..||++|.+...+...
T Consensus       106 ~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~  182 (246)
T cd03237         106 EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYL  182 (246)
T ss_pred             HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            2111111222 2222 22334455666778899999876  444444444443322  2356789999987766654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.01  E-value=0.0045  Score=53.85  Aligned_cols=123  Identities=13%  Similarity=0.048  Sum_probs=62.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccC----------cCH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIG----------EDY  278 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~----------~~~  278 (394)
                      -.+++|+|..|.|||||.+.++...   ......+++.-..-....   ..+-..++-......-+.          +.-
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G   99 (173)
T cd03230          26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG   99 (173)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence            3588999999999999999998732   122333333110000000   000000100000000000          011


Q ss_pred             HHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          279 QLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       279 ~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...-.+...+..++=++++|+--.  +......+...+... ..|..||++|.+.......
T Consensus       100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~  161 (173)
T cd03230         100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL  161 (173)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence            1222345555666788899999877  444444444444322 2367799999988766644

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=97.01  E-value=0.00075  Score=56.48  Aligned_cols=107  Identities=13%  Similarity=0.097  Sum_probs=60.1

Q ss_pred             ceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc-ccccCeeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 016120          189 NEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV-KFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPP  267 (394)
Q Consensus       189 ~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~  267 (394)
                      +|.-..+.++.+.+..-.....-|.|.|..|+||+++|+.++..... ...|...-   ... ..     .+++..    
T Consensus         1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~---~~~-~~-----~~~l~~----   67 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVID---CAS-LP-----AELLEQ----   67 (138)
T ss_dssp             --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCC---HHC-TC-----HHHHHH----
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEec---hhh-Cc-----HHHHHH----
Confidence            35555566666666443223456679999999999999999874222 12222100   000 00     111111    


Q ss_pred             CCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCC-CCCcEEEEecCCh
Q 016120          268 SRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDD-ENGSRVLITVTDP  331 (394)
Q Consensus       268 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-~~gs~IivTTR~~  331 (394)
                                             .+.--|+|+|+.. +......+...+... ....|+|.||+.+
T Consensus        68 -----------------------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~  110 (138)
T PF14532_consen   68 -----------------------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD  110 (138)
T ss_dssp             -----------------------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred             -----------------------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence                                   1344578999988 566666676666533 5678999998854

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.0081  Score=61.41  Aligned_cols=167  Identities=17%  Similarity=0.145  Sum_probs=90.9

Q ss_pred             ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++-|.++.+.+|.+.+.-.           -...+-|..+|++|+|||++|+.+.+  +-+-+|     +.++..    +
T Consensus       435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp----E  503 (693)
T KOG0730|consen  435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP----E  503 (693)
T ss_pred             hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH----H
Confidence            5666777666666554322           13566777999999999999999999  555555     222211    1


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC---C-----c----hhHHHHHhhCCCCCCCcE
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---N-----S----EIWSDLEELLPDDENGSR  323 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~-----~----~~~~~l~~~l~~~~~gs~  323 (394)
                      +    +...-+.         +...+.+...+.-+--++++.||.++.   .     .    ..+..|..-+........
T Consensus       504 L----~sk~vGe---------SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~  570 (693)
T KOG0730|consen  504 L----FSKYVGE---------SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN  570 (693)
T ss_pred             H----HHHhcCc---------hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence            1    1111111         333333444443344568999998865   0     0    122333333333233334


Q ss_pred             EEE---ecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCCCCCCcCCCch
Q 016120          324 VLI---TVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAI  385 (394)
Q Consensus       324 Iiv---TTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~~~~~~~~~~~  385 (394)
                      |+|   |.|. +........  ..+.++.     +++-  +.+-..++|+.++...+..+...++.|
T Consensus       571 V~ViAATNRp-d~ID~ALlRPGRlD~iiy-----VplP--D~~aR~~Ilk~~~kkmp~~~~vdl~~L  629 (693)
T KOG0730|consen  571 VLVIAATNRP-DMIDPALLRPGRLDRIIY-----VPLP--DLEARLEILKQCAKKMPFSEDVDLEEL  629 (693)
T ss_pred             EEEEeccCCh-hhcCHHHcCCcccceeEe-----ecCc--cHHHHHHHHHHHHhcCCCCccccHHHH
Confidence            444   4443 333332222  2356666     7666  666777999988877676665444333

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.01  E-value=0.0097  Score=53.39  Aligned_cols=53  Identities=15%  Similarity=0.325  Sum_probs=32.6

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+..++-+++||+--.  +......+...+... ..|..||++|.+.......
T Consensus       139 la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~  194 (210)
T cd03269         139 FIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEEL  194 (210)
T ss_pred             HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence            4444555667899999876  444444444444321 2366799999988765544

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK07261 topology modulation protein; Provisional

Probab=97.00  E-value=0.0014  Score=57.00  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .|.|+|++|+||||||+.+...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999998763

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=96.98  E-value=0.0026  Score=59.25  Aligned_cols=92  Identities=13%  Similarity=0.244  Sum_probs=55.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCccccccc-CeeEEEEeCCCCC-HHHHHHHHHHHhCCCCCCc--cccCc------CHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYF-DCLAWVRVSIAYD-FGKMLDDIIKSVMPPSRVS--VIIGE------DYQ  279 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~~--~~~~~------~~~  279 (394)
                      ..++|.|.+|+|||||++.+++  .++.+| +.++++-+++... +.++..++...-......-  ...++      -..
T Consensus        70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~  147 (274)
T cd01133          70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA  147 (274)
T ss_pred             CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence            4678999999999999999998  555455 4456667766554 4455555543211110000  00111      111


Q ss_pred             HHHHHHHHHc--c-CCeEEEEEeCCCC
Q 016120          280 LKKSILRDYL--T-NKKYFIVLDDVFD  303 (394)
Q Consensus       280 ~~~~~l~~~l--~-~kr~LlVlDdv~~  303 (394)
                      ...-.+.+++  + ++..|+++||+-.
T Consensus       148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr  174 (274)
T cd01133         148 LTGLTMAEYFRDEEGQDVLLFIDNIFR  174 (274)
T ss_pred             HHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence            2233455565  3 8999999999854

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.97  E-value=0.011  Score=53.19  Aligned_cols=129  Identities=14%  Similarity=0.100  Sum_probs=65.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccc-c--ccC-----------eeEEEEeCC----CCCHH---------------H
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVK-F--YFD-----------CLAWVRVSI----AYDFG---------------K  255 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~--~F~-----------~~~wv~vs~----~~~~~---------------~  255 (394)
                      -.+++|+|..|.|||||.+.+....... .  .|+           .+.++.-..    ..++.               .
T Consensus        37 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~  116 (214)
T PRK13543         37 GEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQ  116 (214)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHH
Confidence            3478999999999999999998632110 0  011           122332111    01111               1


Q ss_pred             HHHHHHHHhCCCCCCccccCc-CH-HHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCC
Q 016120          256 MLDDIIKSVMPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTD  330 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~-~~-~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~  330 (394)
                      ...+++..++........... +. +...-.+...+-.++-+++||+--+  +....+.+...+.. ...|..||++|.+
T Consensus       117 ~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~  196 (214)
T PRK13543        117 MPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG  196 (214)
T ss_pred             HHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            223344444332111111122 11 2222333444445666899999876  44444444444432 1335678889998


Q ss_pred             hHHHhhc
Q 016120          331 PDLLASL  337 (394)
Q Consensus       331 ~~v~~~~  337 (394)
                      .......
T Consensus       197 ~~~~~~~  203 (214)
T PRK13543        197 AYAAPPV  203 (214)
T ss_pred             hhhhhhh
Confidence            8766655

>PRK06696 uridine kinase; Validated

Probab=96.97  E-value=0.00089  Score=60.91  Aligned_cols=42  Identities=19%  Similarity=0.086  Sum_probs=34.4

Q ss_pred             eecccHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          190 EFERGREELFDLLIEG-PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       190 Gr~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .|.+.+++|.+.+... ..+..+|+|.|.+|+||||||+.+..
T Consensus         2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~   44 (223)
T PRK06696          2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE   44 (223)
T ss_pred             cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            3566778888888652 34678999999999999999999987

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.96  E-value=0.0091  Score=53.60  Aligned_cols=53  Identities=26%  Similarity=0.355  Sum_probs=32.5

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+..++-+++||+--+  +......+...+... ..|..||++|.+.......
T Consensus       145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~  200 (211)
T cd03225         145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL  200 (211)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            3344455667899999876  444444444444321 2366788888887766554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]

Probab=96.96  E-value=0.014  Score=55.24  Aligned_cols=171  Identities=13%  Similarity=0.072  Sum_probs=95.5

Q ss_pred             ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcC-cccccccCeeEEEEeCCCCCH-HHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNN-DHVKFYFDCLAWVRVSIAYDF-GKMLDDIIK  262 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~-~~~~~~F~~~~wv~vs~~~~~-~~i~~~i~~  262 (394)
                      .++|..++..++-.++...  .+....+.|+|+.|.|||+|.-....+ +++.++|   .-|........ +-.++.|..
T Consensus        25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~r  101 (408)
T KOG2228|consen   25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGITR  101 (408)
T ss_pred             ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHHH
Confidence            7899888888888887543  123556779999999999988777765 2344444   33333333322 223444444


Q ss_pred             HhCCCCCCccccCc-CHHHHHHHHHHHcc------CCeEEEEEeCCCC--Cch----hHHHHHhhCCCCCCCcEEEEecC
Q 016120          263 SVMPPSRVSVIIGE-DYQLKKSILRDYLT------NKKYFIVLDDVFD--NSE----IWSDLEELLPDDENGSRVLITVT  329 (394)
Q Consensus       263 ~l~~~~~~~~~~~~-~~~~~~~~l~~~l~------~kr~LlVlDdv~~--~~~----~~~~l~~~l~~~~~gs~IivTTR  329 (394)
                      ++....... .... +..+....+...|+      +-+...|+|..+-  ...    .++-+-..-....+-|-|-+|||
T Consensus       102 ql~~e~~~~-~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr  180 (408)
T KOG2228|consen  102 QLALELNRI-VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR  180 (408)
T ss_pred             HHHHHHhhh-heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence            443222110 0011 33333444444443      2368888988765  111    11111111123456677888999


Q ss_pred             ChH-------HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          330 DPD-------LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       330 ~~~-------v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      -..       |-...   +...++-     ++++  +-++...++++..
T Consensus       181 ld~lE~LEKRVKSRF---shr~I~m-----~~~~--~l~~yv~l~r~ll  219 (408)
T KOG2228|consen  181 LDILELLEKRVKSRF---SHRVIFM-----LPSL--PLGDYVDLYRKLL  219 (408)
T ss_pred             ccHHHHHHHHHHhhc---ccceeec-----cCCC--ChHHHHHHHHHHh
Confidence            742       22222   2333555     7778  8999999998874

>PRK07667 uridine kinase; Provisional

Probab=96.95  E-value=0.0011  Score=58.79  Aligned_cols=37  Identities=22%  Similarity=0.245  Sum_probs=31.8

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          195 REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+.|.+.+....++..+|+|.|.+|+||||+|+.+..
T Consensus         3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~   39 (193)
T PRK07667          3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE   39 (193)
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            5677777777666778999999999999999999987

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.95  E-value=0.014  Score=52.26  Aligned_cols=53  Identities=19%  Similarity=0.335  Sum_probs=33.1

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++=+++||+--.  +....+.+...+... ..|..||++|.+......+
T Consensus       137 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~  192 (205)
T cd03226         137 IAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV  192 (205)
T ss_pred             HHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            3444555677999999876  444444554444322 3466688888887766544

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.95  E-value=0.014  Score=52.69  Aligned_cols=54  Identities=19%  Similarity=0.356  Sum_probs=33.0

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...|-.++=+++||+--.  +......+...+... ..|..||++|.+.+.....
T Consensus       148 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~  204 (216)
T TIGR00960       148 AIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETY  204 (216)
T ss_pred             HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            34445556677899999876  444444444443321 2356688888887766544

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=96.94  E-value=0.0086  Score=54.32  Aligned_cols=53  Identities=21%  Similarity=0.253  Sum_probs=33.2

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-..+-+++||+--.  +....+.+...+... ..|..||++|.+.+.....
T Consensus       135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~  190 (223)
T TIGR03740       135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQL  190 (223)
T ss_pred             HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence            4444555678899999876  444444444444321 2366799999998766544

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.94  E-value=0.0048  Score=53.95  Aligned_cols=125  Identities=18%  Similarity=0.100  Sum_probs=61.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE---EeCCCC-CHHHHHHHHHHHhCCCCCCc------ccc---C
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV---RVSIAY-DFGKMLDDIIKSVMPPSRVS------VII---G  275 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---~vs~~~-~~~~i~~~i~~~l~~~~~~~------~~~---~  275 (394)
                      -.+++|+|..|.|||||++.+....   ......+.+   .++... ........+ ..+.......      ...   -
T Consensus        26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i-~~~~q~~~~~~~~t~~~~l~~~l  101 (178)
T cd03229          26 GEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRI-GMVFQDFALFPHLTVLENIALGL  101 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcE-EEEecCCccCCCCCHHHheeecC
Confidence            3588999999999999999998631   122333333   111100 001110000 0000000000      000   0


Q ss_pred             cCHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          276 EDYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       276 ~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +.-+...-.+...+..++=+++||+--.  +......+...+...  ..|..||++|.+.......
T Consensus       102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~  167 (178)
T cd03229         102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARL  167 (178)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            0112222334445556777899999876  444445554444322  2256788888887666544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.93  E-value=0.00082  Score=64.82  Aligned_cols=46  Identities=13%  Similarity=0.155  Sum_probs=40.1

Q ss_pred             ccceecccHHHHHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          187 DINEFERGREELFDLLIEG----PSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +++|.++.++++++++...    +.+.+++.++|++|+||||||+.+.+.
T Consensus        52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~  101 (361)
T smart00763       52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG  101 (361)
T ss_pred             hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999763    235688999999999999999999874

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>CHL00195 ycf46 Ycf46; Provisional

Probab=96.93  E-value=0.008  Score=60.94  Aligned_cols=156  Identities=15%  Similarity=0.147  Sum_probs=81.8

Q ss_pred             ccceecccHHHHHHHHhc--------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHH
Q 016120          187 DINEFERGREELFDLLIE--------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLD  258 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~--------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~  258 (394)
                      ++.|.+..++.+.+....        +-...+-+.++|++|+|||.+|+.+.+  +..-.|   +-+..+      .   
T Consensus       229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~--e~~~~~---~~l~~~------~---  294 (489)
T CHL00195        229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN--DWQLPL---LRLDVG------K---  294 (489)
T ss_pred             HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEEhH------H---
Confidence            777877666555442211        112345678999999999999999998  333222   111111      1   


Q ss_pred             HHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC---C------ch----hHHHHHhhCCCCCCCcEEE
Q 016120          259 DIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---N------SE----IWSDLEELLPDDENGSRVL  325 (394)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~------~~----~~~~l~~~l~~~~~gs~Ii  325 (394)
                       +....         ...+...+.+.+...-...+++|.+|++..   +      ..    ....+...+.....+--||
T Consensus       295 -l~~~~---------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI  364 (489)
T CHL00195        295 -LFGGI---------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV  364 (489)
T ss_pred             -hcccc---------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence             11110         011223333333333345789999999974   0      00    1112222232223333455


Q ss_pred             EecCChHH-Hhhch-hcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120          326 ITVTDPDL-LASLE-MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       326 vTTR~~~v-~~~~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~  373 (394)
                      .||.+.+- -..+- .+.-+..+.     ++.-  +.++-.++|..++..
T Consensus       365 aTTN~~~~Ld~allR~GRFD~~i~-----v~lP--~~~eR~~Il~~~l~~  407 (489)
T CHL00195        365 ATANNIDLLPLEILRKGRFDEIFF-----LDLP--SLEEREKIFKIHLQK  407 (489)
T ss_pred             EecCChhhCCHHHhCCCcCCeEEE-----eCCc--CHHHHHHHHHHHHhh
Confidence            57766532 11110 012356677     8888  888888999887543

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=96.93  E-value=0.0058  Score=54.50  Aligned_cols=53  Identities=21%  Similarity=0.211  Sum_probs=33.5

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhh
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLAS  336 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~  336 (394)
                      .+...+-.++=+++||+--.  +......+...+..- ..|..||++|.+......
T Consensus       114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~  169 (200)
T cd03217         114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY  169 (200)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence            34455556777899999876  444444444444322 236678889988876664

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.0057  Score=63.04  Aligned_cols=147  Identities=14%  Similarity=0.138  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCCCCCCCC-------CCcccccc------CCCCCCCc-ccceecccHHHHHHHHhcC-
Q 016120          141 LLVELHTKIIDIRNRMQQLPPGDNGFDISD-------KCNEIIHL------LSEGQPRL-DINEFERGREELFDLLIEG-  205 (394)
Q Consensus       141 ~r~~i~~~i~~i~~~l~~l~~~~~~~~~~~-------~~~~~~~~------~~~~~~~~-~~~Gr~~~~~~i~~~L~~~-  205 (394)
                      ....+.+.+.+-..+++.+......|.+.-       +-+....+      .+...... +=+|.++-+++|++.+--. 
T Consensus       352 ~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~k  431 (906)
T KOG2004|consen  352 MPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGK  431 (906)
T ss_pred             CcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHh
Confidence            334455677777788888888888886543       11110000      00000011 6789999999999998543 


Q ss_pred             ---CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHH
Q 016120          206 ---PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKK  282 (394)
Q Consensus       206 ---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~  282 (394)
                         +.+-++++.+|++|||||.+|+.|+.  .....|-   -++|+.-.|..+|        .+....  .+..-...+.
T Consensus       432 Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeI--------kGHRRT--YVGAMPGkiI  496 (906)
T KOG2004|consen  432 LRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEI--------KGHRRT--YVGAMPGKII  496 (906)
T ss_pred             hcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhh--------ccccee--eeccCChHHH
Confidence               34567999999999999999999987  4444442   2345554444332        111110  0111223333


Q ss_pred             HHHHHHccCCeEEEEEeCCCC
Q 016120          283 SILRDYLTNKKYFIVLDDVFD  303 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~  303 (394)
                      +.|+.. +...-|+.||.|+.
T Consensus       497 q~LK~v-~t~NPliLiDEvDK  516 (906)
T KOG2004|consen  497 QCLKKV-KTENPLILIDEVDK  516 (906)
T ss_pred             HHHHhh-CCCCceEEeehhhh
Confidence            333332 23466888898875

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=96.93  E-value=0.015  Score=52.82  Aligned_cols=59  Identities=10%  Similarity=0.206  Sum_probs=36.7

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhchhcCCCceee
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASLEMENGEKIRR  347 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~~~~~~~~~~~  347 (394)
                      +...+-..+-+++||+--.  +....+.+...+..- ..|..||++|.+...+..+    .++++.
T Consensus       160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~----~d~i~~  221 (224)
T TIGR02324       160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELV----ADRVMD  221 (224)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh----cceeEe
Confidence            3344445567899999876  444445555444321 2366789999988777655    245665

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.92  E-value=0.0019  Score=56.28  Aligned_cols=36  Identities=19%  Similarity=0.303  Sum_probs=28.5

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV  245 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv  245 (394)
                      ...+|.++|+.|+||||+|+.+++  ....++...+++
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~   41 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL   41 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence            356899999999999999999998  555555555555

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.92  E-value=0.016  Score=51.65  Aligned_cols=126  Identities=13%  Similarity=0.146  Sum_probs=72.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEe-------------------CCCCC-----------------
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRV-------------------SIAYD-----------------  252 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v-------------------s~~~~-----------------  252 (394)
                      -.+++|+|++|+|||||.+.+..=+..   =+..+|+.-                   -++|+                 
T Consensus        28 Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~  104 (240)
T COG1126          28 GEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK  104 (240)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence            358999999999999999998652211   123344321                   11221                 


Q ss_pred             --------HHHHHHHHHHHhCCCCCCccccCc--CHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CC
Q 016120          253 --------FGKMLDDIIKSVMPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DE  319 (394)
Q Consensus       253 --------~~~i~~~i~~~l~~~~~~~~~~~~--~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~  319 (394)
                              ..+...++++..+...........  .-++..-.+.+.|.-++-++.+|..-+  +++.-.++...... ..
T Consensus       105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~  184 (240)
T COG1126         105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE  184 (240)
T ss_pred             HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence                    233445555655554332111111  233334456666777788899999987  66655555443332 23


Q ss_pred             CCcEEEEecCChHHHhhc
Q 016120          320 NGSRVLITVTDPDLLASL  337 (394)
Q Consensus       320 ~gs~IivTTR~~~v~~~~  337 (394)
                      .|-..|+.|..-..|..+
T Consensus       185 eGmTMivVTHEM~FAr~V  202 (240)
T COG1126         185 EGMTMIIVTHEMGFAREV  202 (240)
T ss_pred             cCCeEEEEechhHHHHHh
Confidence            465666677776666666

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.91  E-value=0.0027  Score=57.10  Aligned_cols=54  Identities=15%  Similarity=0.185  Sum_probs=32.0

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+..++=+++||+--.  +...-+.+...+.....+..||++|.+.......
T Consensus       140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~  195 (211)
T cd03264         140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESL  195 (211)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHh
Confidence            34445556778899999766  3433344443333222235688888887766544

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]

Probab=96.91  E-value=0.0055  Score=58.51  Aligned_cols=41  Identities=20%  Similarity=0.333  Sum_probs=31.9

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADT  229 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v  229 (394)
                      .+.+|..+..--+++|+.++  ...|.+.|.+|.|||.||-..
T Consensus       225 Gi~prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaA  265 (436)
T COG1875         225 GIRPRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAA  265 (436)
T ss_pred             ccCcccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHH
Confidence            34556666666778887765  899999999999999887544

>cd01394 radB RadB

Probab=96.91  E-value=0.006  Score=55.12  Aligned_cols=93  Identities=11%  Similarity=0.068  Sum_probs=50.9

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCC-CCCccccCc-CHHH---H
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPP-SRVSVIIGE-DYQL---K  281 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~-~~~~~~~~~-~~~~---~  281 (394)
                      +.-.++.|.|.+|+||||+|.+++..  ....-..++|++....+.  .-+.+++...... .....-.+. +..+   .
T Consensus        17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (218)
T cd01394          17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRA   92 (218)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHH
Confidence            34578889999999999999988763  322234567887655543  3333443321000 000000111 2222   2


Q ss_pred             HHHHHHHccCCeEEEEEeCCCC
Q 016120          282 KSILRDYLTNKKYFIVLDDVFD  303 (394)
Q Consensus       282 ~~~l~~~l~~kr~LlVlDdv~~  303 (394)
                      ...+...+..+.-++|+|-+..
T Consensus        93 ~~~~~~~~~~~~~lvvIDsi~~  114 (218)
T cd01394          93 IQETETFADEKVDLVVVDSATA  114 (218)
T ss_pred             HHHHHHHHhcCCcEEEEechHH
Confidence            3344444554567999999864

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.90  E-value=0.013  Score=54.53  Aligned_cols=53  Identities=21%  Similarity=0.336  Sum_probs=32.7

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+|+||+--.  +...-..+...+...  ..|..||++|.+.+.....
T Consensus       139 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~  195 (255)
T PRK11248        139 IARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFM  195 (255)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            3444455677999999876  444444444444321  2366788888887766554

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.90  E-value=0.0061  Score=56.17  Aligned_cols=127  Identities=13%  Similarity=0.095  Sum_probs=74.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC-----CCCHHHHHHHHHHHhCCCCCCc-cccCc-CHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI-----AYDFGKMLDDIIKSVMPPSRVS-VIIGE-DYQLK  281 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~i~~~i~~~l~~~~~~~-~~~~~-~~~~~  281 (394)
                      -.++++||.+|+||||+++.+..   ....-...++..-.+     .....+-..+++...+...... ..-.+ +-.+.
T Consensus        39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr  115 (268)
T COG4608          39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR  115 (268)
T ss_pred             CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence            45899999999999999999986   222223333332111     2223445667777776543211 11122 33333


Q ss_pred             H-HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhch
Q 016120          282 K-SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASLE  338 (394)
Q Consensus       282 ~-~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~~  338 (394)
                      + -.+...|.-++-|+|.|.--+  +...-.++...+.+  ...|-..+..|-+-.|+..++
T Consensus       116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is  177 (268)
T COG4608         116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS  177 (268)
T ss_pred             hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence            3 334555778899999999766  23222333333322  234566788888888888873

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=96.90  E-value=0.014  Score=54.24  Aligned_cols=128  Identities=13%  Similarity=0.107  Sum_probs=64.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCccc-cc--ccC---------eeEEEEeCCC----CCH------------HHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHV-KF--YFD---------CLAWVRVSIA----YDF------------GKMLDDI  260 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~---------~~~wv~vs~~----~~~------------~~i~~~i  260 (394)
                      -.+++|+|..|+|||||.+.+..-... ..  .|+         ...|+.-...    .++            ..-..++
T Consensus        38 Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~  117 (257)
T PRK11247         38 GQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA  117 (257)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHH
Confidence            358999999999999999999753110 00  011         1223311110    111            1122344


Q ss_pred             HHHhCCCCCCccccCc---CHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHH
Q 016120          261 IKSVMPPSRVSVIIGE---DYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDL  333 (394)
Q Consensus       261 ~~~l~~~~~~~~~~~~---~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v  333 (394)
                      ++.++...........   ...+.. .+...+-..+=+++||.--.  +...-..+...+..  ...|..||++|.+...
T Consensus       118 l~~~gl~~~~~~~~~~LSgGqkqrl-~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~  196 (257)
T PRK11247        118 LAAVGLADRANEWPAALSGGQKQRV-ALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE  196 (257)
T ss_pred             HHHcCChhHhcCChhhCCHHHHHHH-HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            4554443211111122   222222 33334445667889999876  44444444444432  1235668888888765


Q ss_pred             Hhhc
Q 016120          334 LASL  337 (394)
Q Consensus       334 ~~~~  337 (394)
                      ....
T Consensus       197 ~~~~  200 (257)
T PRK11247        197 AVAM  200 (257)
T ss_pred             HHHh
Confidence            5443

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.90  E-value=0.0065  Score=52.83  Aligned_cols=122  Identities=16%  Similarity=0.096  Sum_probs=59.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC--CCCHHHHHHHHHHHhCCCCCCc-----cc-cCcCHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI--AYDFGKMLDDIIKSVMPPSRVS-----VI-IGEDYQLK  281 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~i~~~i~~~l~~~~~~~-----~~-~~~~~~~~  281 (394)
                      .+++|+|..|.|||||.+.+..-.   ......+++.-..  ..........+. .+.......     .+ ++....+.
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~qr  104 (173)
T cd03246          29 ESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQR  104 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHHH
Confidence            488999999999999999998631   1222333321100  111111111100 000000000     00 01122222


Q ss_pred             HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhh
Q 016120          282 KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLAS  336 (394)
Q Consensus       282 ~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~  336 (394)
                       -.+...+..++=+++||+-..  +......+...+... ..|..||++|.+......
T Consensus       105 -v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~  161 (173)
T cd03246         105 -LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS  161 (173)
T ss_pred             -HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence             334444555666889999876  444444444443321 236678888888876653

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=96.89  E-value=0.022  Score=53.23  Aligned_cols=132  Identities=17%  Similarity=0.110  Sum_probs=72.8

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE---EeCCCCCHHHHHHHHHHHhCCCCCC
Q 016120          194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV---RVSIAYDFGKMLDDIIKSVMPPSRV  270 (394)
Q Consensus       194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---~vs~~~~~~~i~~~i~~~l~~~~~~  270 (394)
                      ..+.++..|... .....++|+|..|+|||||.+.+...  +. .....+++   .+......    .++......-...
T Consensus        97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~  168 (270)
T TIGR02858        97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQH  168 (270)
T ss_pred             cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEEeecchhH----HHHHHHhcccccc
Confidence            456666666643 23578899999999999999999873  22 22333443   11111011    2333222211110


Q ss_pred             --ccccCc-CHHHHHHHHHHHc-cCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          271 --SVIIGE-DYQLKKSILRDYL-TNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       271 --~~~~~~-~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                        ....+. +...-..-+...+ ...+=++++|.+.. .+.+..+...+.   .|..||+||.+.++....
T Consensus       169 ~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~-~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~~  235 (270)
T TIGR02858       169 DVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR-EEDVEALLEALH---AGVSIIATAHGRDVEDLY  235 (270)
T ss_pred             cccccccccccchHHHHHHHHHHhCCCCEEEEeCCCc-HHHHHHHHHHHh---CCCEEEEEechhHHHHHH
Confidence              000111 1111122233333 24788999999988 766666666552   477899999987765543

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=96.88  E-value=0.0084  Score=55.57  Aligned_cols=129  Identities=15%  Similarity=0.142  Sum_probs=63.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCccc-ccc--cC---eeEEEEeCCCC------CHH-----------HHHHHHHHHhC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHV-KFY--FD---CLAWVRVSIAY------DFG-----------KMLDDIIKSVM  265 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~---~~~wv~vs~~~------~~~-----------~i~~~i~~~l~  265 (394)
                      -.+++|+|..|.|||||++.++.-... ...  ++   ...++.-...+      +..           .-...+++.++
T Consensus        30 Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g  109 (251)
T PRK09544         30 GKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQ  109 (251)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcC
Confidence            358999999999999999999863111 000  11   12222111000      000           11233344444


Q ss_pred             CCCCCccccCc-CHH-HHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          266 PPSRVSVIIGE-DYQ-LKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       266 ~~~~~~~~~~~-~~~-~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      ........... +.. ...-.+...+-.++=+++||+--.  +...-..+...+..-  ..|..||++|.+.+.....
T Consensus       110 l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~  187 (251)
T PRK09544        110 AGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAK  187 (251)
T ss_pred             ChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence            32211111222 222 222233444555677999999877  444444444444321  2256688888887665443

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.88  E-value=0.01  Score=53.32  Aligned_cols=53  Identities=21%  Similarity=0.336  Sum_probs=33.0

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...|..++-+++||+--.  +......+...+...  ..|..||++|.+.......
T Consensus       141 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~  197 (213)
T cd03259         141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALAL  197 (213)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHh
Confidence            4444556677999999876  444445555444332  2366788888887655444

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=96.87  E-value=0.0069  Score=58.41  Aligned_cols=45  Identities=11%  Similarity=0.022  Sum_probs=36.1

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++|....+.++.+.+..-.....-|.|+|..|+||+++|+.++.
T Consensus         7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~   51 (326)
T PRK11608          7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY   51 (326)
T ss_pred             ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence            678988888888888765433344567899999999999999986

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.87  E-value=0.013  Score=52.93  Aligned_cols=23  Identities=17%  Similarity=0.128  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|+|||||.+.+..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~i~G   48 (220)
T cd03265          26 GEIFGLLGPNGAGKTTTIKMLTT   48 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35889999999999999999975

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.85  E-value=0.014  Score=52.24  Aligned_cols=53  Identities=26%  Similarity=0.333  Sum_probs=33.4

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-..+-+++||+--.  +......+...+... ..|..||++|.+......+
T Consensus       140 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~  195 (204)
T PRK13538        140 LARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASD  195 (204)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccC
Confidence            3444555677899999876  454445554444321 2355688888887766666

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.85  E-value=0.015  Score=52.59  Aligned_cols=64  Identities=22%  Similarity=0.363  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhchhcCCCceee
Q 016120          279 QLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASLEMENGEKIRR  347 (394)
Q Consensus       279 ~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~~~~~~~~~~~  347 (394)
                      ++..-.+.+.|-..+-+|+-|+=-.  +...=+.+...+...  ..|..||+.|.++.+|..+     ++++.
T Consensus       147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~-----dr~i~  214 (226)
T COG1136         147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA-----DRVIE  214 (226)
T ss_pred             HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC-----CEEEE
Confidence            3334455566667777788887543  233223444444322  4477899999999999987     45555

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=96.84  E-value=0.0047  Score=53.59  Aligned_cols=45  Identities=18%  Similarity=0.099  Sum_probs=32.0

Q ss_pred             cceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          188 INEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       188 ~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ++|....+.++++.+..-.....-|.|+|..|+||+.+|+.+++.
T Consensus         1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~   45 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN   45 (168)
T ss_dssp             SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred             CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence            467777778887777543223345569999999999999999983

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=96.84  E-value=0.012  Score=53.07  Aligned_cols=22  Identities=23%  Similarity=0.184  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..++|+|..|+|||||.+.+..
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~G   53 (218)
T cd03266          32 EVTGLLGPNGAGKTTTLRMLAG   53 (218)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5789999999999999999975

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.0072  Score=60.26  Aligned_cols=129  Identities=18%  Similarity=0.157  Sum_probs=76.8

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR  286 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~  286 (394)
                      .+...+.+.|++|+|||+||..+..    ...|+.+--++.      +.+       ++.          +...-...++
T Consensus       536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSp------e~m-------iG~----------sEsaKc~~i~  588 (744)
T KOG0741|consen  536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISP------EDM-------IGL----------SESAKCAHIK  588 (744)
T ss_pred             CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeCh------HHc-------cCc----------cHHHHHHHHH
Confidence            3566778899999999999999975    345664333221      110       011          2222333333


Q ss_pred             HH----ccCCeEEEEEeCCCCCchhH------------HHHHhhCCCC-CCCcEEEE--ecCChHHHhhchh-cCCCcee
Q 016120          287 DY----LTNKKYFIVLDDVFDNSEIW------------SDLEELLPDD-ENGSRVLI--TVTDPDLLASLEM-ENGEKIR  346 (394)
Q Consensus       287 ~~----l~~kr~LlVlDdv~~~~~~~------------~~l~~~l~~~-~~gs~Iiv--TTR~~~v~~~~~~-~~~~~~~  346 (394)
                      ..    -+..--.||+||+.. .-+|            ..|...|... ..|-|.+|  ||....|...|.. ..-...|
T Consensus       589 k~F~DAYkS~lsiivvDdiEr-LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i  667 (744)
T KOG0741|consen  589 KIFEDAYKSPLSIIVVDDIER-LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTI  667 (744)
T ss_pred             HHHHHhhcCcceEEEEcchhh-hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhhee
Confidence            33    345567899999976 3333            2333344333 34445444  7777788887743 2235667


Q ss_pred             eCCccCCCCCCCCh-HHHHHHHHHH
Q 016120          347 RDSVLFGGPLIRLK-HEAWQFFILH  370 (394)
Q Consensus       347 ~~~~~~l~~L~~~~-~~~~~Lf~~~  370 (394)
                      +     ++-+  +. ++..+.++..
T Consensus       668 ~-----Vpnl--~~~~~~~~vl~~~  685 (744)
T KOG0741|consen  668 H-----VPNL--TTGEQLLEVLEEL  685 (744)
T ss_pred             e-----cCcc--CchHHHHHHHHHc
Confidence            7     8888  65 7777777765

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=96.84  E-value=0.035  Score=53.33  Aligned_cols=154  Identities=10%  Similarity=0.073  Sum_probs=88.6

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc-----cc-ccccCe--eEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          195 REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND-----HV-KFYFDC--LAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-----~~-~~~F~~--~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      ...+.+.+..+ .-.....+.|+.|+||+++|+.+..-.     .. ..+-.|  +-++..+..+|+..+        .+
T Consensus        11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p   81 (325)
T PRK06871         11 YQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------EP   81 (325)
T ss_pred             HHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------cc
Confidence            34455555443 234567789999999999998886421     10 000011  011222222222111        00


Q ss_pred             CCCCccccCcCHHHHHH---HHHHHc-cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhc
Q 016120          267 PSRVSVIIGEDYQLKKS---ILRDYL-TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEME  340 (394)
Q Consensus       267 ~~~~~~~~~~~~~~~~~---~l~~~l-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~  340 (394)
                      ...  ..+  ..++..+   .+...- .+++=++|+|++.. +....+.+...+-.-..++.+|++|.++ .+....  .
T Consensus        82 ~~~--~~I--~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI--~  155 (325)
T PRK06871         82 IDN--KDI--GVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTI--Y  155 (325)
T ss_pred             ccC--CCC--CHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHH--H
Confidence            000  001  3333333   322221 35666888999998 6777888888887767777777777765 555444  2


Q ss_pred             CCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          341 NGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       341 ~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                      +....+.     +.++  +.++..+.+.+.
T Consensus       156 SRC~~~~-----~~~~--~~~~~~~~L~~~  178 (325)
T PRK06871        156 SRCQTWL-----IHPP--EEQQALDWLQAQ  178 (325)
T ss_pred             hhceEEe-----CCCC--CHHHHHHHHHHH
Confidence            4567888     9999  999998877765

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=96.83  E-value=0.013  Score=54.37  Aligned_cols=23  Identities=13%  Similarity=0.127  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|.|||||.+.++.
T Consensus        26 Ge~~~IvG~nGsGKSTLlk~l~G   48 (255)
T cd03236          26 GQVLGLVGPNGIGKSTALKILAG   48 (255)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999975

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.83  E-value=0.017  Score=52.31  Aligned_cols=23  Identities=22%  Similarity=0.215  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .+++|+|..|+|||||++.++.-
T Consensus        31 ~~~~i~G~nGsGKSTLl~~l~Gl   53 (220)
T cd03293          31 EFVALVGPSGCGKSTLLRIIAGL   53 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            58899999999999999999763

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02012 tigrfam_recA protein RecA

Probab=96.83  E-value=0.0029  Score=60.48  Aligned_cols=90  Identities=12%  Similarity=0.037  Sum_probs=56.6

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHH
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSIL  285 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l  285 (394)
                      +.-+++-|+|++|+||||||.++..  .....-..++|++....++..     .++.++.....-...+. +.++....+
T Consensus        53 p~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~  125 (321)
T TIGR02012        53 PRGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA  125 (321)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence            3456888999999999999988776  333334567788777666553     34555433211001111 455556666


Q ss_pred             HHHcc-CCeEEEEEeCCCC
Q 016120          286 RDYLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       286 ~~~l~-~kr~LlVlDdv~~  303 (394)
                      ...++ +..-++|+|.|-.
T Consensus       126 ~~li~~~~~~lIVIDSv~a  144 (321)
T TIGR02012       126 ETLVRSGAVDIIVVDSVAA  144 (321)
T ss_pred             HHHhhccCCcEEEEcchhh
Confidence            55554 4567999999864

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=96.82  E-value=0.0042  Score=55.83  Aligned_cols=52  Identities=23%  Similarity=0.378  Sum_probs=33.3

Q ss_pred             HHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          286 RDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       286 ~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      ...+-.++-+++||+--.  +....+.+...+..-  ..|..||++|.+.......
T Consensus       140 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~  195 (211)
T cd03298         140 ARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRL  195 (211)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhh
Confidence            334445677899999876  455555555555432  2366788888888766554

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.82  E-value=0.012  Score=51.57  Aligned_cols=53  Identities=21%  Similarity=0.356  Sum_probs=33.4

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+++||+--.  +....+.+...+..- ..|..||++|.+.......
T Consensus       115 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~  170 (182)
T cd03215         115 LARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGL  170 (182)
T ss_pred             HHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            4445556778899999876  455555555444322 2366789999887555444

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.82  E-value=0.011  Score=53.68  Aligned_cols=55  Identities=18%  Similarity=0.286  Sum_probs=33.9

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhch
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASLE  338 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~~  338 (394)
                      .+.+.|.-++=+||+|..-+  |...-..+...|..  ...|-.+|+.|.+-.++..+|
T Consensus       151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c  209 (252)
T COG1124         151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC  209 (252)
T ss_pred             HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence            34455666788899999866  32222333333321  234556888899988888775

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.81  E-value=0.016  Score=53.12  Aligned_cols=54  Identities=13%  Similarity=0.108  Sum_probs=33.8

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+-.++-+++||+--.  +....+.+...+...  ..|..||++|.+.+.+..+
T Consensus       142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~  199 (236)
T TIGR03864       142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEAD  199 (236)
T ss_pred             HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhC
Confidence            34445556778899999876  454445555544432  2366788888887665533

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=96.81  E-value=0.0065  Score=55.86  Aligned_cols=53  Identities=13%  Similarity=0.240  Sum_probs=33.7

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+++||..-.  +......+...+... ..|..||++|.+.......
T Consensus       152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~  207 (242)
T PRK11124        152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKT  207 (242)
T ss_pred             HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            3444455677999999887  555555555554432 2366788888887766544

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]

Probab=96.81  E-value=0.011  Score=57.97  Aligned_cols=40  Identities=18%  Similarity=0.234  Sum_probs=33.2

Q ss_pred             ecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHhcC
Q 016120          191 FERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFT-ADTYNN  232 (394)
Q Consensus       191 r~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~  232 (394)
                      |.+..++|..||.+..  -..|.|.|+-|+||+.|+ .++..+
T Consensus         1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~   41 (431)
T PF10443_consen    1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKD   41 (431)
T ss_pred             CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhC
Confidence            5677899999998864  468889999999999999 777664

It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.80  E-value=0.014  Score=52.04  Aligned_cols=54  Identities=17%  Similarity=0.155  Sum_probs=33.3

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+..++-+++||+--.  +...-+.+...+.. ...|..||+||.+......+
T Consensus       137 ~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~  193 (200)
T PRK13540        137 ALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKA  193 (200)
T ss_pred             HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcccc
Confidence            34444555677899999876  34333444444432 13467799999987665554

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=96.80  E-value=0.013  Score=55.83  Aligned_cols=53  Identities=8%  Similarity=0.219  Sum_probs=32.1

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+++||+--.  +...-+.+...+..-..+..||+||.+.+.+...
T Consensus       144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~  198 (301)
T TIGR03522       144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAI  198 (301)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHh
Confidence            4445566778899999876  4433333333332222256799999988755444

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=96.80  E-value=0.013  Score=56.47  Aligned_cols=45  Identities=13%  Similarity=-0.005  Sum_probs=33.3

Q ss_pred             cceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          188 INEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       188 ~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ++|....+.++.+.+..-.....-|.|+|..|+||+++|+.+++.
T Consensus         1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~   45 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL   45 (329)
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence            367666777777766544333455679999999999999999863

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.80  E-value=0.01  Score=54.10  Aligned_cols=53  Identities=17%  Similarity=0.294  Sum_probs=32.5

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+++||+--.  +...-..+...+..-  ..|..||++|.+.+.....
T Consensus       151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~  207 (233)
T cd03258         151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRI  207 (233)
T ss_pred             HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            3344455667899999876  444444444444322  2367789999888765544

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=96.80  E-value=0.0097  Score=53.30  Aligned_cols=53  Identities=19%  Similarity=0.255  Sum_probs=33.3

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+..++-+++||+--.  +......+...+... ..|..||++|.+.......
T Consensus       137 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~  192 (208)
T cd03268         137 IALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKV  192 (208)
T ss_pred             HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence            4444555667899999876  444445554444322 2466789999988766544

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.79  E-value=0.013  Score=54.94  Aligned_cols=54  Identities=26%  Similarity=0.319  Sum_probs=33.8

Q ss_pred             HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhh
Q 016120          283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLAS  336 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~  336 (394)
                      -.+...|..++=+|+||+...  +......+...+... ..|..||++|.+.+.+..
T Consensus       147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~  203 (274)
T PRK13647        147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAE  203 (274)
T ss_pred             HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            344455666788999999877  454444554444322 236678888888765543

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=96.79  E-value=0.012  Score=55.23  Aligned_cols=53  Identities=17%  Similarity=0.335  Sum_probs=32.1

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++=+++||+-..  +......+...+..- ..|..||++|.+.+.....
T Consensus       153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~  208 (272)
T PRK15056        153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEF  208 (272)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            3444445677899999877  454445554444321 2366688888887654444

>TIGR01817 nifA Nif-specific regulatory protein

Probab=96.78  E-value=0.015  Score=59.97  Aligned_cols=46  Identities=13%  Similarity=0.007  Sum_probs=37.7

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .++|....+.++.+.+..-......|.|+|..|+|||++|+.+++.
T Consensus       197 ~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~  242 (534)
T TIGR01817       197 GIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL  242 (534)
T ss_pred             ceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence            8899999999988887654333445679999999999999999874

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=96.78  E-value=0.0051  Score=63.29  Aligned_cols=43  Identities=23%  Similarity=0.149  Sum_probs=35.8

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|.+..+..+...+....  ..-+.|+|.+|+|||++|+.+++
T Consensus        66 ~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~  108 (531)
T TIGR02902        66 EIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLE  108 (531)
T ss_pred             HeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence            89999999999888776543  34557899999999999999976

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK13695 putative NTPase; Provisional

Probab=96.78  E-value=0.0019  Score=56.32  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .+.|+|.+|+|||||++.+++.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~   23 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAEL   23 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998873

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=96.78  E-value=0.012  Score=62.75  Aligned_cols=133  Identities=14%  Similarity=0.099  Sum_probs=71.6

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|....+..+.+.+..-.....-|.|+|..|+|||++|+.+++.... .. ...+.++...- ....+-..++....+
T Consensus       377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-~~-~~~v~i~c~~~-~~~~~~~~lfg~~~~  453 (686)
T PRK15429        377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR-NN-RRMVKMNCAAM-PAGLLESDLFGHERG  453 (686)
T ss_pred             ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC-CC-CCeEEEecccC-ChhHhhhhhcCcccc
Confidence            7899998888887777543233446779999999999999999874211 11 12233433322 111111122111110


Q ss_pred             CCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEEEecCCh
Q 016120          267 PSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDE-----------NGSRVLITVTDP  331 (394)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~IivTTR~~  331 (394)
                      .      +..........+   -....=.|+||||.. .......|...+..+.           .+.|||.||...
T Consensus       454 ~------~~g~~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~  521 (686)
T PRK15429        454 A------FTGASAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD  521 (686)
T ss_pred             c------ccccccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence            0      000001111111   112235699999998 5666667766654321           345888887653

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=96.77  E-value=0.016  Score=52.13  Aligned_cols=52  Identities=13%  Similarity=0.232  Sum_probs=32.3

Q ss_pred             HHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          286 RDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       286 ~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      ...+..++-+++||+--.  +......+...+...  ..|..||++|.+.......
T Consensus       140 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~  195 (213)
T TIGR01277       140 ARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAI  195 (213)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh
Confidence            334445677999999877  455445555444432  2366788888887655443

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=96.77  E-value=0.014  Score=53.03  Aligned_cols=54  Identities=20%  Similarity=0.295  Sum_probs=33.5

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+-.++-++++|+--.  +......+...+... ..|..||++|.+.+.....
T Consensus       123 ~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~  179 (223)
T TIGR03771       123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMAT  179 (223)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            44555566778899999876  444444444444321 2466788888887654443

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.77  E-value=0.018  Score=52.57  Aligned_cols=53  Identities=15%  Similarity=0.180  Sum_probs=32.8

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+++||+--.  +...-..+...+..-  ..|..||++|.+.+.+...
T Consensus       147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~  203 (235)
T cd03261         147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAI  203 (235)
T ss_pred             HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHh
Confidence            3444555677899999876  444444454444332  2366788888887765544

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=96.77  E-value=0.016  Score=52.20  Aligned_cols=23  Identities=22%  Similarity=0.235  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      . .+++|+|..|+|||||++.+..
T Consensus        23 ~-e~~~i~G~nGsGKSTLl~~l~G   45 (214)
T cd03297          23 E-EVTGIFGASGAGKSTLLRCIAG   45 (214)
T ss_pred             c-eeEEEECCCCCCHHHHHHHHhC
Confidence            5 8999999999999999999975

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.76  E-value=0.0013  Score=54.79  Aligned_cols=87  Identities=16%  Similarity=0.108  Sum_probs=47.3

Q ss_pred             EEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccC
Q 016120          212 VAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTN  291 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~  291 (394)
                      |.++|++|+|||+||+.++.  ....   ...-+.++...+..+++...--. ....    .+  ....+...+     .
T Consensus         2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~~----~~--~~~~l~~a~-----~   64 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSYDPS-NGQF----EF--KDGPLVRAM-----R   64 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEEET--TTTT----CE--EE-CCCTTH-----H
T ss_pred             EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeeeeec-cccc----cc--ccccccccc-----c
Confidence            56899999999999999987  3311   12335666766666554322211 0000    00  001000000     1


Q ss_pred             CeEEEEEeCCCC-CchhHHHHHhhC
Q 016120          292 KKYFIVLDDVFD-NSEIWSDLEELL  315 (394)
Q Consensus       292 kr~LlVlDdv~~-~~~~~~~l~~~l  315 (394)
                      +..++|||++.. +...+..+...+
T Consensus        65 ~~~il~lDEin~a~~~v~~~L~~ll   89 (139)
T PF07728_consen   65 KGGILVLDEINRAPPEVLESLLSLL   89 (139)
T ss_dssp             EEEEEEESSCGG--HHHHHTTHHHH
T ss_pred             ceeEEEECCcccCCHHHHHHHHHHH
Confidence            789999999986 355555555544

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.76  E-value=0.017  Score=53.15  Aligned_cols=126  Identities=21%  Similarity=0.239  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCc-----ccc------ccc---CeeEEEEeCCCCC------H----------------
Q 016120          210 AVVAILDSSGFDKTVFTADTYNND-----HVK------FYF---DCLAWVRVSIAYD------F----------------  253 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~-----~~~------~~F---~~~~wv~vs~~~~------~----------------  253 (394)
                      ..++|+|+.|.|||||.+.+..-.     ++.      ..+   ..+.||+-...++      +                
T Consensus        31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~  110 (254)
T COG1121          31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR  110 (254)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence            689999999999999999997611     111      001   1344552211111      1                


Q ss_pred             ------HHHHHHHHHHhCCCCCCccccCc-CHHHHH-HHHHHHccCCeEEEEEeCCCC--Cchh---HHHHHhhCCCCCC
Q 016120          254 ------GKMLDDIIKSVMPPSRVSVIIGE-DYQLKK-SILRDYLTNKKYFIVLDDVFD--NSEI---WSDLEELLPDDEN  320 (394)
Q Consensus       254 ------~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~-~~l~~~l~~kr~LlVlDdv~~--~~~~---~~~l~~~l~~~~~  320 (394)
                            .+...+.++..+...-....+.. +-.+.+ -.+.+.|..++=||+||.=-.  |...   .-++...+.. . 
T Consensus       111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~-e-  188 (254)
T COG1121         111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-E-  188 (254)
T ss_pred             cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-
Confidence                  24455556666555433344555 444444 455666888999999998655  2222   2333333332 2 


Q ss_pred             CcEEEEecCChHHHhhc
Q 016120          321 GSRVLITVTDPDLLASL  337 (394)
Q Consensus       321 gs~IivTTR~~~v~~~~  337 (394)
                      |+.||++|-+.+.....
T Consensus       189 g~tIl~vtHDL~~v~~~  205 (254)
T COG1121         189 GKTVLMVTHDLGLVMAY  205 (254)
T ss_pred             CCEEEEEeCCcHHhHhh
Confidence            88899999987544433

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.76  E-value=0.02  Score=52.18  Aligned_cols=25  Identities=16%  Similarity=0.151  Sum_probs=22.8

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhc
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+..+++|.|++|+|||||++.+..
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~   55 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEA   55 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999998886

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.76  E-value=0.0066  Score=51.81  Aligned_cols=116  Identities=16%  Similarity=0.166  Sum_probs=63.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCC--CCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA--YDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD  287 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~  287 (394)
                      .+++|+|..|.|||||.+.+...  . ......+++.-...  ......    ...++-..    .++..... .-.+..
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~----qlS~G~~~-r~~l~~   93 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP----QLSGGQRQ-RVALAR   93 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCCHHHH----HhceEEEe----eCCHHHHH-HHHHHH
Confidence            58899999999999999999873  2 23344455422111  111111    11111000    01112222 233445


Q ss_pred             HccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          288 YLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       288 ~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+-++++|+.-.  +......+...+... .++..++++|.+.......
T Consensus        94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~  146 (157)
T cd00267          94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA  146 (157)
T ss_pred             HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            5555678899999876  444444444444321 2256788888887766655

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.75  E-value=0.0034  Score=60.03  Aligned_cols=90  Identities=14%  Similarity=0.063  Sum_probs=56.6

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHH
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSIL  285 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l  285 (394)
                      +.-+++-|+|++|+||||||.+++.  .....-..++|++....+++.     .+..++.....---... +.++....+
T Consensus        53 p~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~  125 (325)
T cd00983          53 PKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA  125 (325)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence            3456888999999999999998876  333334567899877766653     34444432111000111 455566666


Q ss_pred             HHHcc-CCeEEEEEeCCCC
Q 016120          286 RDYLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       286 ~~~l~-~kr~LlVlDdv~~  303 (394)
                      ...++ +..-++|+|.|-.
T Consensus       126 ~~li~s~~~~lIVIDSvaa  144 (325)
T cd00983         126 DSLVRSGAVDLIVVDSVAA  144 (325)
T ss_pred             HHHHhccCCCEEEEcchHh
Confidence            66554 4567999999864

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=96.75  E-value=0.036  Score=53.08  Aligned_cols=71  Identities=14%  Similarity=0.139  Sum_probs=49.7

Q ss_pred             CCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHH
Q 016120          291 NKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD-PDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFI  368 (394)
Q Consensus       291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~  368 (394)
                      +++-++|+|++.. +...-+.|...+-.-..++.+|++|.+ ..+...+  .+....+.     +.++  +.+++...+.
T Consensus       112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTI--rSRCq~i~-----~~~~--~~~~~~~~L~  182 (319)
T PRK08769        112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATI--RSRCQRLE-----FKLP--PAHEALAWLL  182 (319)
T ss_pred             CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHH--HhhheEee-----CCCc--CHHHHHHHHH
Confidence            4567899999988 566666777776655567777777665 3455444  34567778     9999  9888887776


Q ss_pred             HH
Q 016120          369 LH  370 (394)
Q Consensus       369 ~~  370 (394)
                      +.
T Consensus       183 ~~  184 (319)
T PRK08769        183 AQ  184 (319)
T ss_pred             Hc
Confidence            53

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=96.75  E-value=0.0057  Score=56.79  Aligned_cols=75  Identities=15%  Similarity=0.087  Sum_probs=46.3

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD  287 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~  287 (394)
                      +..-+.++|.+|+|||.||..+.+.  ....--.+.+++      ..+++.++.......            .....+.+
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~------~~el~~~Lk~~~~~~------------~~~~~l~~  163 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFIT------APDLLSKLKAAFDEG------------RLEEKLLR  163 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhcC------------chHHHHHH
Confidence            4567789999999999999999994  433222334553      456666666554431            11222222


Q ss_pred             HccCCeEEEEEeCCCC
Q 016120          288 YLTNKKYFIVLDDVFD  303 (394)
Q Consensus       288 ~l~~kr~LlVlDdv~~  303 (394)
                      .+. +-=||||||+-.
T Consensus       164 ~l~-~~dlLIiDDlG~  178 (254)
T COG1484         164 ELK-KVDLLIIDDIGY  178 (254)
T ss_pred             Hhh-cCCEEEEecccC
Confidence            221 234899999976

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=96.75  E-value=0.009  Score=57.76  Aligned_cols=96  Identities=8%  Similarity=0.063  Sum_probs=58.1

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccc----cccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc----cccCc-C
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVK----FYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS----VIIGE-D  277 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~----~~~~~-~  277 (394)
                      +.-.+.-|+|.+|+|||+|+..++-.....    ..-..++|++-...|++.++.+ +++.++......    .-... +
T Consensus       124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~  202 (344)
T PLN03187        124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYT  202 (344)
T ss_pred             CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCC
Confidence            345677899999999999998876422221    1124678999999999888654 566665542110    00111 3


Q ss_pred             HHHHH---HHHHHHcc-CCeEEEEEeCCCC
Q 016120          278 YQLKK---SILRDYLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       278 ~~~~~---~~l~~~l~-~kr~LlVlDdv~~  303 (394)
                      .+.+.   ..+...+. .+--|||+|.+-.
T Consensus       203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSita  232 (344)
T PLN03187        203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVIA  232 (344)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence            33333   33333443 3456899999864

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=96.74  E-value=0.0012  Score=60.87  Aligned_cols=50  Identities=18%  Similarity=0.210  Sum_probs=40.5

Q ss_pred             ccceecccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhcCcccccc
Q 016120          187 DINEFERGREELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY  238 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~  238 (394)
                      +|+|.++.++++.=.+...   +..+--+.++|++|.||||||..+.+  +...+
T Consensus        27 efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn   79 (332)
T COG2255          27 EFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVN   79 (332)
T ss_pred             HhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCC
Confidence            8999999888887666543   34577889999999999999999999  44443

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.74  E-value=0.015  Score=52.27  Aligned_cols=23  Identities=26%  Similarity=0.179  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .+++|+|..|+|||||++.+..-
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03301          27 EFVVLLGPSGCGKTTTLRMIAGL   49 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999863

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=96.74  E-value=0.0024  Score=57.29  Aligned_cols=121  Identities=12%  Similarity=0.066  Sum_probs=62.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY  288 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~  288 (394)
                      ..++.|.|+.|.||||+.+.+.... +..  .+..+|+...  ..-.+...|...++.........+. ...-...+...
T Consensus        29 ~~~~~l~G~n~~GKstll~~i~~~~-~la--~~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~-fs~e~~~~~~i  102 (204)
T cd03282          29 SRFHIITGPNMSGKSTYLKQIALLA-IMA--QIGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLST-FASEMSETAYI  102 (204)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH-HHH--HcCCCcchhh--cCccChhheeEecCCccccchhhhH-HHHHHHHHHHH
Confidence            3689999999999999998886421 111  1111221111  1112333444444433221111111 11111122333


Q ss_pred             c--cCCeEEEEEeCCCC--CchhH----HHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          289 L--TNKKYFIVLDDVFD--NSEIW----SDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       289 l--~~kr~LlVlDdv~~--~~~~~----~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +  ..++-|++||....  ++.+.    ..+...+.  ..|+.+|++|.+.+++..+
T Consensus       103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~  157 (204)
T cd03282         103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAIL  157 (204)
T ss_pred             HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHh
Confidence            3  35688999999865  23221    12223332  2378899999999988877

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=96.73  E-value=0.014  Score=61.50  Aligned_cols=158  Identities=15%  Similarity=0.164  Sum_probs=83.4

Q ss_pred             ccceecccHHHHHHHHh---cCC-------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120          187 DINEFERGREELFDLLI---EGP-------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  256 (394)
                      ++.|.+...+++.+.+.   ...       .-.+-+.++|++|+|||++|+.+.+  +...+|   +.++.+.      +
T Consensus       153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~--~~~~~f---~~is~~~------~  221 (644)
T PRK10733        153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGSD------F  221 (644)
T ss_pred             HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCCE---EEEehHH------h
Confidence            77787766665554442   210       1123488999999999999999987  343333   2222111      1


Q ss_pred             HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC---C--------chhH----HHHHhhCCC--CC
Q 016120          257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---N--------SEIW----SDLEELLPD--DE  319 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~--------~~~~----~~l~~~l~~--~~  319 (394)
                          .....+.         ....+...+.......+++|++|+++.   .        ...+    ..+...+..  ..
T Consensus       222 ----~~~~~g~---------~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~  288 (644)
T PRK10733        222 ----VEMFVGV---------GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN  288 (644)
T ss_pred             ----HHhhhcc---------cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC
Confidence                1111000         222333334444445789999999865   0        0112    222222211  12


Q ss_pred             CCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120          320 NGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP  375 (394)
Q Consensus       320 ~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~  375 (394)
                      .+.-+|.||..++.....-..  .-+..+.     ++..  +.++-.+++..++...+
T Consensus       289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~-----v~~P--d~~~R~~Il~~~~~~~~  339 (644)
T PRK10733        289 EGIIVIAATNRPDVLDPALLRPGRFDRQVV-----VGLP--DVRGREQILKVHMRRVP  339 (644)
T ss_pred             CCeeEEEecCChhhcCHHHhCCcccceEEE-----cCCC--CHHHHHHHHHHHhhcCC
Confidence            344455577766543322111  1245666     8777  77788888887766544

>PRK09354 recA recombinase A; Provisional

Probab=96.73  E-value=0.0066  Score=58.58  Aligned_cols=90  Identities=14%  Similarity=0.041  Sum_probs=57.9

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHH
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSIL  285 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l  285 (394)
                      +.-+++-|+|++|+||||||.+++.  .....-..++|+.....+++.     .++.++.....--.... +.++....+
T Consensus        58 p~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~  130 (349)
T PRK09354         58 PRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA  130 (349)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence            3456888999999999999988876  333344677899887777753     34555433111000111 455556666


Q ss_pred             HHHcc-CCeEEEEEeCCCC
Q 016120          286 RDYLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       286 ~~~l~-~kr~LlVlDdv~~  303 (394)
                      ...++ +..-++|+|-|-.
T Consensus       131 ~~li~s~~~~lIVIDSvaa  149 (349)
T PRK09354        131 DTLVRSGAVDLIVVDSVAA  149 (349)
T ss_pred             HHHhhcCCCCEEEEeChhh
Confidence            66654 4567999999864

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=96.72  E-value=0.0072  Score=56.20  Aligned_cols=95  Identities=14%  Similarity=0.081  Sum_probs=57.3

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccc----cCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc-------cccCc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFY----FDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS-------VIIGE  276 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-------~~~~~  276 (394)
                      .-.+.=|+|.+|+|||+|+..++-...+...    =..++|++-...|...++. +|++..+......       ...+.
T Consensus        37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~  115 (256)
T PF08423_consen   37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL  115 (256)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred             CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence            3458889999999999999877643232221    2358899988889887764 5676654321110       11111


Q ss_pred             -CHHHHHHHHHHHc-cCCeEEEEEeCCCC
Q 016120          277 -DYQLKKSILRDYL-TNKKYFIVLDDVFD  303 (394)
Q Consensus       277 -~~~~~~~~l~~~l-~~kr~LlVlDdv~~  303 (394)
                       +...+...+...+ .++--|||+|.+-.
T Consensus       116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIaa  144 (256)
T PF08423_consen  116 EELLELLEQLPKLLSESKIKLIVIDSIAA  144 (256)
T ss_dssp             HHHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred             HHHHHHHHHHHhhccccceEEEEecchHH
Confidence             3333344444444 34556999999854

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.044  Score=55.80  Aligned_cols=155  Identities=17%  Similarity=0.193  Sum_probs=88.2

Q ss_pred             ccceecccHHHHHHHHhcC----C-------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIEG----P-------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~----~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++-|.++.+.++...+...    +       ....=|.+||++|+|||-||++|+|  +-+-+|     ++|-.    .+
T Consensus       512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKG----PE  580 (802)
T KOG0733|consen  512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKG----PE  580 (802)
T ss_pred             hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecC----HH
Confidence            4555666666766665543    0       1244567899999999999999999  666665     22222    12


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC------Cchh------HHHHHhhCCCC--CCC
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD------NSEI------WSDLEELLPDD--ENG  321 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~------~~~~------~~~l~~~l~~~--~~g  321 (394)
                      ++....             .++.....+...+.-..-+|.|.+|.+..      +...      .++|..-+...  ..|
T Consensus       581 LlNkYV-------------GESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~g  647 (802)
T KOG0733|consen  581 LLNKYV-------------GESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRG  647 (802)
T ss_pred             HHHHHh-------------hhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccc
Confidence            222211             11233333333333356799999999975      1222      23444444322  345


Q ss_pred             cEEEEecCChHHHhhchhcC--CCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          322 SRVLITVTDPDLLASLEMEN--GEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       322 s~IivTTR~~~v~~~~~~~~--~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      --||-.|-.+++....-..+  -+++..     ++.-  +.+|-..+++....
T Consensus       648 V~viaATNRPDiIDpAiLRPGRlDk~Ly-----V~lP--n~~eR~~ILK~~tk  693 (802)
T KOG0733|consen  648 VYVIAATNRPDIIDPAILRPGRLDKLLY-----VGLP--NAEERVAILKTITK  693 (802)
T ss_pred             eEEEeecCCCcccchhhcCCCccCceee-----ecCC--CHHHHHHHHHHHhc
Confidence            55666666565543321111  134444     8888  88999999988765

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.71  E-value=0.019  Score=51.27  Aligned_cols=52  Identities=17%  Similarity=0.341  Sum_probs=33.5

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHh
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLA  335 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~  335 (394)
                      .+...|-.++-+++||+--.  +....+.+...+... ..|..||++|.+.....
T Consensus       144 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~  198 (206)
T TIGR03608       144 ALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK  198 (206)
T ss_pred             HHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence            34455566788999999877  444445554444321 23677888888877654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.71  E-value=0.017  Score=51.95  Aligned_cols=53  Identities=13%  Similarity=0.281  Sum_probs=32.1

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+++||+--.  +......+...+... ..|..||++|.+.......
T Consensus       147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~  202 (214)
T cd03292         147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTT  202 (214)
T ss_pred             HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            3444455667899999876  444444444444321 2366788888887665544

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.70  E-value=0.0026  Score=56.66  Aligned_cols=113  Identities=12%  Similarity=0.095  Sum_probs=57.1

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE  276 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~  276 (394)
                      +.+..+...  +-++..|.|.+|+||||+++.+...  .... ...+.+....+    .....+.+..+....       
T Consensus         8 ~a~~~~l~~--~~~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~----~Aa~~L~~~~~~~a~-------   71 (196)
T PF13604_consen    8 EAVRAILTS--GDRVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTN----KAAKELREKTGIEAQ-------   71 (196)
T ss_dssp             HHHHHHHHC--TCSEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSH----HHHHHHHHHHTS-EE-------
T ss_pred             HHHHHHHhc--CCeEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcH----HHHHHHHHhhCcchh-------
Confidence            344444333  2467788999999999999888762  3222 23333333332    222233333332211       


Q ss_pred             CHHHHHHHHHHHc------cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEe
Q 016120          277 DYQLKKSILRDYL------TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLIT  327 (394)
Q Consensus       277 ~~~~~~~~l~~~l------~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivT  327 (394)
                      +...........-      ..++-+||+|+..- +...+..+....+.  .|+|+|+.
T Consensus        72 Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilv  127 (196)
T PF13604_consen   72 TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILV  127 (196)
T ss_dssp             EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEE
T ss_pred             hHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEE
Confidence            2221111110000      12335999999987 56677777777654  46777764

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=96.70  E-value=0.027  Score=51.18  Aligned_cols=24  Identities=8%  Similarity=0.043  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -.+++|+|..|+|||||++.+..-
T Consensus        48 Ge~~~i~G~nGsGKSTLl~~l~G~   71 (224)
T cd03220          48 GERIGLIGRNGAGKSTLLRLLAGI   71 (224)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999999863

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=96.69  E-value=0.022  Score=52.22  Aligned_cols=54  Identities=19%  Similarity=0.241  Sum_probs=34.7

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+..++=+++||+--.  +...-+.+...+..  ...|..||++|.+...+...
T Consensus       163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~  220 (236)
T cd03267         163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEAL  220 (236)
T ss_pred             HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHh
Confidence            34445556677999999877  45444555544432  12356799999998766554

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=96.68  E-value=0.0094  Score=51.01  Aligned_cols=120  Identities=10%  Similarity=0.040  Sum_probs=62.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCccccc-ccCeeE--EEEeCCCCCHHHHHHHHH--HH--hCCCCCC-ccccCc---CH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKF-YFDCLA--WVRVSIAYDFGKMLDDII--KS--VMPPSRV-SVIIGE---DY  278 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~--wv~vs~~~~~~~i~~~i~--~~--l~~~~~~-~~~~~~---~~  278 (394)
                      ..|-|++..|.||||+|..+.-  +... .+.+.+  |+.-........++..+-  ..  .+....- .++...   ..
T Consensus         3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a   80 (159)
T cd00561           3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA   80 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence            4677888889999999977765  2222 222222  233222233333333320  00  0000000 000000   12


Q ss_pred             HHHHHHHHHHccC-CeEEEEEeCCCC----CchhHHHHHhhCCCCCCCcEEEEecCCh
Q 016120          279 QLKKSILRDYLTN-KKYFIVLDDVFD----NSEIWSDLEELLPDDENGSRVLITVTDP  331 (394)
Q Consensus       279 ~~~~~~l~~~l~~-kr~LlVlDdv~~----~~~~~~~l~~~l~~~~~gs~IivTTR~~  331 (394)
                      ....+..++.+.. +-=|||||++-.    ..-..+.+...+.....+..||+|.|+.
T Consensus        81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~  138 (159)
T cd00561          81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA  138 (159)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence            2233344444544 445999999865    2334567777777677778899999985

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=96.68  E-value=0.023  Score=52.17  Aligned_cols=53  Identities=19%  Similarity=0.254  Sum_probs=31.9

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+++||+--.  +......+...+..-..+..||++|.+.+.+...
T Consensus       154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~  208 (242)
T TIGR03411       154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSI  208 (242)
T ss_pred             HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence            4444555667899999876  4444444444333222245688888887765544

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10908 cell division protein FtsE; Provisional

Probab=96.67  E-value=0.026  Score=51.10  Aligned_cols=53  Identities=17%  Similarity=0.258  Sum_probs=31.9

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+++||+--.  +...-+.+...+... ..|..||++|.+.+.....
T Consensus       148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~  203 (222)
T PRK10908        148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRR  203 (222)
T ss_pred             HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            3444455677999999876  443333343333321 2356788888888766655

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=96.66  E-value=0.023  Score=52.69  Aligned_cols=54  Identities=19%  Similarity=0.243  Sum_probs=34.1

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+..++=+++||+.-.  +......+...+... ..|..||++|.+.......
T Consensus       147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~  203 (256)
T TIGR03873       147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASY  203 (256)
T ss_pred             HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            34444555678999999876  455455555444322 2366788898888766544

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK06762 hypothetical protein; Provisional

Probab=96.66  E-value=0.0076  Score=51.91  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|.|+|++|+||||+|+.+..
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~   24 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQE   24 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5889999999999999999987

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.66  E-value=0.018  Score=52.89  Aligned_cols=53  Identities=15%  Similarity=0.166  Sum_probs=33.1

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+++||+--.  +......+...+...  ..|..||++|.+.+.....
T Consensus       142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~  198 (241)
T PRK14250        142 IARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRI  198 (241)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHh
Confidence            4444555677999999877  444445555544432  2366788888887665543

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=96.66  E-value=0.0061  Score=55.69  Aligned_cols=53  Identities=17%  Similarity=0.305  Sum_probs=32.6

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+..++=+++||+--.  +......+...+...  ..|..||++|.+.......
T Consensus       140 laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~  196 (232)
T PRK10771        140 LARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARI  196 (232)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence            3334445667889999876  454444454444322  2366788899888765544

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.66  E-value=0.0086  Score=52.40  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +|.|+|++|+||||+|+.+..
T Consensus         1 ~i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999987

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.65  E-value=0.013  Score=54.16  Aligned_cols=129  Identities=17%  Similarity=0.177  Sum_probs=72.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCccccc----------------cc-CeeEEEEe----------------CC------
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKF----------------YF-DCLAWVRV----------------SI------  249 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------------~F-~~~~wv~v----------------s~------  249 (394)
                      -.+++|+|+.|+|||||.+.++.-..-..                .+ ....+|.-                +.      
T Consensus        28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~  107 (258)
T COG1120          28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL  107 (258)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccccc
Confidence            46899999999999999999975211000                00 01112211                11      


Q ss_pred             ----CCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHH-HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CC
Q 016120          250 ----AYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKK-SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DE  319 (394)
Q Consensus       250 ----~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~-~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~  319 (394)
                          ...-.++..+.++.++...-..+.+++ +-.+.+ -.+...|.++.=+|.||.=-+  |...--.+...+..  ..
T Consensus       108 ~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~  187 (258)
T COG1120         108 FGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE  187 (258)
T ss_pred             ccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh
Confidence                111223455556666665444444555 444444 445556778888889998655  22211222222221  24


Q ss_pred             CCcEEEEecCChHHHhhc
Q 016120          320 NGSRVLITVTDPDLLASL  337 (394)
Q Consensus       320 ~gs~IivTTR~~~v~~~~  337 (394)
                      .|..||+++.+.+.|...
T Consensus       188 ~~~tvv~vlHDlN~A~ry  205 (258)
T COG1120         188 KGLTVVMVLHDLNLAARY  205 (258)
T ss_pred             cCCEEEEEecCHHHHHHh
Confidence            467799999999887776

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=96.65  E-value=0.058  Score=51.68  Aligned_cols=154  Identities=12%  Similarity=0.050  Sum_probs=86.5

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC-----cccccccCe--eEEEEeCCCCCHHHHHHHHHHHhCCC
Q 016120          195 REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN-----DHVKFYFDC--LAWVRVSIAYDFGKMLDDIIKSVMPP  267 (394)
Q Consensus       195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~-----~~~~~~F~~--~~wv~vs~~~~~~~i~~~i~~~l~~~  267 (394)
                      ..++.+.+..+ .-...+-+.|+.|+||+++|+.+..-     .....+-.|  +-++..+..+|...+        .+.
T Consensus        12 ~~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p~   82 (319)
T PRK06090         12 WQNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI--------KPE   82 (319)
T ss_pred             HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ecC
Confidence            34555554433 33557889999999999999887541     100000000  011111222221110        000


Q ss_pred             CCCccccCcCHHHHHHHHHHHc-----cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhc
Q 016120          268 SRVSVIIGEDYQLKKSILRDYL-----TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEME  340 (394)
Q Consensus       268 ~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~  340 (394)
                      .. +..+  ..+++.+ +.+.+     .+++=.+|+|++.. +....+.+...+-.-..++.+|++|.++ .+....  .
T Consensus        83 ~~-~~~I--~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI--~  156 (319)
T PRK06090         83 KE-GKSI--TVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTI--V  156 (319)
T ss_pred             cC-CCcC--CHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH--H
Confidence            00 0001  3333332 22222     24556889999998 7778888888887666777777766664 555555  3


Q ss_pred             CCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          341 NGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       341 ~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                      +....+.     +.++  +.++..+.+...
T Consensus       157 SRCq~~~-----~~~~--~~~~~~~~L~~~  179 (319)
T PRK06090        157 SRCQQWV-----VTPP--STAQAMQWLKGQ  179 (319)
T ss_pred             hcceeEe-----CCCC--CHHHHHHHHHHc
Confidence            5667888     9999  999988877653

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=96.65  E-value=0.008  Score=54.89  Aligned_cols=53  Identities=25%  Similarity=0.293  Sum_probs=32.5

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+..++=+++||.--.  +......+...+..-  ..|..||++|.+.......
T Consensus       125 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~  181 (230)
T TIGR01184       125 IARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLL  181 (230)
T ss_pred             HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            3444455667899999876  444445554444321  2356788888887665544

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.64  E-value=0.022  Score=51.24  Aligned_cols=22  Identities=23%  Similarity=0.261  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|..|+|||||++.+..
T Consensus        29 ~~~~l~G~nGsGKSTLl~~i~G   50 (214)
T TIGR02673        29 EFLFLTGPSGAGKTTLLKLLYG   50 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999975

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.63  E-value=0.019  Score=50.92  Aligned_cols=117  Identities=12%  Similarity=0.094  Sum_probs=59.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE---------------EeCCCCC---HHHHHHHHHHHhCCCCCC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV---------------RVSIAYD---FGKMLDDIIKSVMPPSRV  270 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv---------------~vs~~~~---~~~i~~~i~~~l~~~~~~  270 (394)
                      -.+++|.|..|.|||||.+.+..-.. .......+++               .+.+.+.   ...+...+.-.....   
T Consensus        35 Ge~~~l~G~nGsGKStLl~~i~Gl~~-~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~---  110 (194)
T cd03213          35 GELTAIMGPSGAGKSTLLNALAGRRT-GLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR---  110 (194)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCC-CCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc---
Confidence            35889999999999999999986320 0111222211               1111111   112222221110000   


Q ss_pred             ccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChH
Q 016120          271 SVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPD  332 (394)
Q Consensus       271 ~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~  332 (394)
                        .++....+. -.+...+..++-++++|+--.  +......+...+... ..|..||++|.+..
T Consensus       111 --~LS~G~~qr-v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~  172 (194)
T cd03213         111 --GLSGGERKR-VSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS  172 (194)
T ss_pred             --cCCHHHHHH-HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence              011122222 334444555667899999877  455555555444322 23667888888764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=96.62  E-value=0.023  Score=57.75  Aligned_cols=126  Identities=10%  Similarity=0.053  Sum_probs=64.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE-------E----eCCCCCHHH------------------HHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV-------R----VSIAYDFGK------------------MLDD  259 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-------~----vs~~~~~~~------------------i~~~  259 (394)
                      -.+++|+|..|.|||||++.+..-..   .....+|+       .    .....++.+                  ....
T Consensus        50 GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~e  126 (549)
T PRK13545         50 GEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPE  126 (549)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHH
Confidence            35889999999999999999986311   11111221       0    011111111                  1123


Q ss_pred             HHHHhCCCCCCccccCc-CHHHHH-HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHH
Q 016120          260 IIKSVMPPSRVSVIIGE-DYQLKK-SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLL  334 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~-~~~~~~-~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~  334 (394)
                      +++.++........... +..+.+ -.+...|...+-+|+||+--.  |......+...+.. ...|..||++|.+....
T Consensus       127 lLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i  206 (549)
T PRK13545        127 IIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQV  206 (549)
T ss_pred             HHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence            34444332211111222 222222 234455556778999999876  44433344333322 13466788999887665


Q ss_pred             hhc
Q 016120          335 ASL  337 (394)
Q Consensus       335 ~~~  337 (394)
                      ...
T Consensus       207 ~~l  209 (549)
T PRK13545        207 KSF  209 (549)
T ss_pred             HHh
Confidence            544

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=96.62  E-value=0.017  Score=54.03  Aligned_cols=93  Identities=14%  Similarity=-0.026  Sum_probs=60.2

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH-hCCCCCCccccCc-CHHHHHHH
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS-VMPPSRVSVIIGE-DYQLKKSI  284 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~-l~~~~~~~~~~~~-~~~~~~~~  284 (394)
                      +.-+++=|+|+.|+||||+|.+++-  ..+..-..++|++....+++..+.. +... +..- ...+..+. ....+.+.
T Consensus        58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l-~v~~~~~~e~q~~i~~~  133 (279)
T COG0468          58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNL-LVSQPDTGEQQLEIAEK  133 (279)
T ss_pred             ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcce-eEecCCCHHHHHHHHHH
Confidence            4567889999999999999988876  3444445889999999999877543 3333 2111 10111222 34444455


Q ss_pred             HHHHccCCeEEEEEeCCCC
Q 016120          285 LRDYLTNKKYFIVLDDVFD  303 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~  303 (394)
                      +......+--|+|+|.|-.
T Consensus       134 ~~~~~~~~i~LvVVDSvaa  152 (279)
T COG0468         134 LARSGAEKIDLLVVDSVAA  152 (279)
T ss_pred             HHHhccCCCCEEEEecCcc
Confidence            5554444467999999865

>PF14516 AAA_35: AAA-like domain

Probab=96.61  E-value=0.028  Score=54.37  Aligned_cols=172  Identities=11%  Similarity=0.097  Sum_probs=93.4

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCC-----CCHHHH----H
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA-----YDFGKM----L  257 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i----~  257 (394)
                      ..+.|...-+++.+.|...+   ..+.|.|+..+|||+|...+.+..+- ..+. +++++...-     .+....    .
T Consensus        12 ~Yi~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~~l~~-~~~~-~v~id~~~~~~~~~~~~~~f~~~~~   86 (331)
T PF14516_consen   12 FYIERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLERLQQ-QGYR-CVYIDLQQLGSAIFSDLEQFLRWFC   86 (331)
T ss_pred             cccCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHHHHHH-CCCE-EEEEEeecCCCcccCCHHHHHHHHH
Confidence            45778877777888887642   57889999999999999999874222 2343 456765541     234444    4


Q ss_pred             HHHHHHhCCCCCCcccc--Cc-CHHHHHHHHHHHc-c--CCeEEEEEeCCCC--C-chhHHHHHhhCC----CCC----C
Q 016120          258 DDIIKSVMPPSRVSVII--GE-DYQLKKSILRDYL-T--NKKYFIVLDDVFD--N-SEIWSDLEELLP----DDE----N  320 (394)
Q Consensus       258 ~~i~~~l~~~~~~~~~~--~~-~~~~~~~~l~~~l-~--~kr~LlVlDdv~~--~-~~~~~~l~~~l~----~~~----~  320 (394)
                      ..+..+++.........  .. ........+.+++ +  +++.+|+||+|..  + ....+++...+.    ...    .
T Consensus        87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~  166 (331)
T PF14516_consen   87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW  166 (331)
T ss_pred             HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence            45555554432111000  01 2233444555543 2  5899999999987  2 222222222221    111    1


Q ss_pred             Cc--EEEEecCChHHHhhchh--cCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          321 GS--RVLITVTDPDLLASLEM--ENGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       321 gs--~IivTTR~~~v~~~~~~--~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                      .+  -|++.+...........  -+....++     |+++  +.+|...|..++
T Consensus       167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~-----L~~F--t~~ev~~L~~~~  213 (331)
T PF14516_consen  167 QKLRLILAGSTEDYIILDINQSPFNIGQPIE-----LPDF--TPEEVQELAQRY  213 (331)
T ss_pred             ceEEEEEecCcccccccCCCCCCccccccee-----CCCC--CHHHHHHHHHhh
Confidence            11  12222211111111100  12244677     9999  999999998876

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=96.61  E-value=0.074  Score=51.49  Aligned_cols=71  Identities=14%  Similarity=0.060  Sum_probs=52.7

Q ss_pred             CCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHH
Q 016120          291 NKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD-PDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFI  368 (394)
Q Consensus       291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~  368 (394)
                      +++=++|+|++.. +...++.+...+-.-.+++.+|++|.+ ..+...+  .+....++     +.++  +.++..+.+.
T Consensus       131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI--~SRcq~i~-----~~~~--~~~~~~~~L~  201 (342)
T PRK06964        131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTI--LSRCRQFP-----MTVP--APEAAAAWLA  201 (342)
T ss_pred             CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHH--HhcCEEEE-----ecCC--CHHHHHHHHH
Confidence            4556889999998 788888888888766677776666665 4555444  24556788     9999  9999888886


Q ss_pred             HH
Q 016120          369 LH  370 (394)
Q Consensus       369 ~~  370 (394)
                      ..
T Consensus       202 ~~  203 (342)
T PRK06964        202 AQ  203 (342)
T ss_pred             Hc
Confidence            64

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.60  E-value=0.016  Score=52.24  Aligned_cols=51  Identities=25%  Similarity=0.424  Sum_probs=31.9

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-C-CCcEEEEecCChHHHh
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-E-NGSRVLITVTDPDLLA  335 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~-~gs~IivTTR~~~v~~  335 (394)
                      +...+...+=+++||+--.  +...-..+...+... . .|..||++|.+.+...
T Consensus       151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~  205 (218)
T cd03255         151 IARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE  205 (218)
T ss_pred             HHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence            4444555677899999876  444444444444332 2 3667888888877665

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=96.60  E-value=0.022  Score=53.26  Aligned_cols=53  Identities=19%  Similarity=0.256  Sum_probs=32.3

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++=+|+||+--.  +...-..+...+..-  ..|..||++|.+.......
T Consensus       171 lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~  227 (269)
T cd03294         171 LARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRL  227 (269)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            4444556677899999876  444444444444321  2366788888887655443

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.60  E-value=0.019  Score=59.47  Aligned_cols=73  Identities=12%  Similarity=0.155  Sum_probs=49.5

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR  286 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~  286 (394)
                      +.-+++-++|++|+||||||..|+++.    .| -++=|++|..-....+-..|...+.-.                   
T Consensus       324 P~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~-------------------  379 (877)
T KOG1969|consen  324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNH-------------------  379 (877)
T ss_pred             CccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhc-------------------
Confidence            456799999999999999999998742    22 245567777666555555544433221                   


Q ss_pred             HHcc--CCeEEEEEeCCCC
Q 016120          287 DYLT--NKKYFIVLDDVFD  303 (394)
Q Consensus       287 ~~l~--~kr~LlVlDdv~~  303 (394)
                      ..+.  +++..||+|.+..
T Consensus       380 s~l~adsrP~CLViDEIDG  398 (877)
T KOG1969|consen  380 SVLDADSRPVCLVIDEIDG  398 (877)
T ss_pred             cccccCCCcceEEEecccC
Confidence            1221  4778899999987

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.59  E-value=0.023  Score=52.01  Aligned_cols=53  Identities=19%  Similarity=0.292  Sum_probs=32.8

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+...+-+++||.-..  +......+...+...  ..|..||++|.+.+.....
T Consensus       155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~  211 (241)
T cd03256         155 IARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREY  211 (241)
T ss_pred             HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            3444555667899999877  444444444444332  2356688888887766644

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=96.59  E-value=0.004  Score=59.41  Aligned_cols=54  Identities=15%  Similarity=0.201  Sum_probs=32.6

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+-.++-+|+||+--.  ++..-..+...+.. ...|..||+||.+.+.+...
T Consensus       134 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~  190 (302)
T TIGR01188       134 DIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKL  190 (302)
T ss_pred             HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence            34445556778899999876  33332333332221 12367799999988766554

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=96.59  E-value=0.0077  Score=60.93  Aligned_cols=167  Identities=10%  Similarity=0.009  Sum_probs=96.2

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccc--cccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVK--FYFDCLAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      +++|.+.....|.+.+..+. -..--...|+.|+||||+|+.+..-.-..  .+.+         .+..-..-+.|...-
T Consensus        17 evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~e---------PC~~C~~Ck~I~~g~   86 (515)
T COG2812          17 DVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAE---------PCGKCISCKEINEGS   86 (515)
T ss_pred             HhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCC---------cchhhhhhHhhhcCC
Confidence            88999999999999887652 23344568999999999998886421111  1111         111111111111110


Q ss_pred             CCCCCCccccCc-CHHHHHHHHHHHc----cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE-ecCChHHHhhc
Q 016120          265 MPPSRVSVIIGE-DYQLKKSILRDYL----TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI-TVTDPDLLASL  337 (394)
Q Consensus       265 ~~~~~~~~~~~~-~~~~~~~~l~~~l----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv-TTR~~~v~~~~  337 (394)
                      ...--+....+. ..++......+..    +++-=..|+|.|.- ....|+.|...+-.-..+-+.|+ ||--+.+....
T Consensus        87 ~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI  166 (515)
T COG2812          87 LIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI  166 (515)
T ss_pred             cccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence            000000000111 3344443333332    34556889999987 67888888887766555655454 55555665555


Q ss_pred             hhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          338 EMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       338 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                        .+....|.     +..|  +.++-...+...+.
T Consensus       167 --lSRcq~f~-----fkri--~~~~I~~~L~~i~~  192 (515)
T COG2812         167 --LSRCQRFD-----FKRL--DLEEIAKHLAAILD  192 (515)
T ss_pred             --hhcccccc-----ccCC--CHHHHHHHHHHHHH
Confidence              35567788     9999  88877777766654

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.58  E-value=0.021  Score=52.40  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|..|+|||||++.+..
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~G   50 (243)
T TIGR02315        29 EFVAIIGPSGAGKSTLLRCINR   50 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999975

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.57  E-value=0.014  Score=51.59  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|..|+|||||.+.+..
T Consensus        19 e~~~i~G~nGsGKSTLl~~i~G   40 (190)
T TIGR01166        19 EVLALLGANGAGKSTLLLHLNG   40 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4889999999999999999975

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.57  E-value=0.0049  Score=59.49  Aligned_cols=26  Identities=12%  Similarity=0.145  Sum_probs=23.3

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .....++|+|++|+|||.+|+.+++.
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~e  171 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKK  171 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence            35778999999999999999999993

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.57  E-value=0.02  Score=51.46  Aligned_cols=53  Identities=11%  Similarity=0.283  Sum_probs=32.1

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+..++=+++||+--.  +....+.+...+..- ..|..||++|.+.+.....
T Consensus       146 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~  201 (213)
T cd03262         146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV  201 (213)
T ss_pred             HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            3444455667899999876  455455554444321 2356688888887655443

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=96.57  E-value=0.057  Score=51.78  Aligned_cols=41  Identities=12%  Similarity=0.121  Sum_probs=32.7

Q ss_pred             cccHHHHHHHHhcCC-CCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          192 ERGREELFDLLIEGP-SGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       192 ~~~~~~i~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +.-.+.|.+.|...+ ....+|+|.|.=|+|||++.+.+.+.
T Consensus         2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~   43 (325)
T PF07693_consen    2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE   43 (325)
T ss_pred             hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            344566777777653 56889999999999999999999873

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=96.56  E-value=0.027  Score=54.21  Aligned_cols=70  Identities=11%  Similarity=0.072  Sum_probs=44.7

Q ss_pred             CCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHH
Q 016120          291 NKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFI  368 (394)
Q Consensus       291 ~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~  368 (394)
                      +++-++|+|++.. +...-+.+...+.....++.+|++|.+. .+...+  .+....++     +.++  +.++..+.+.
T Consensus       112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti--~SRc~~~~-----~~~~--~~~~~~~~L~  182 (325)
T PRK08699        112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTI--KSRCRKMV-----LPAP--SHEEALAYLR  182 (325)
T ss_pred             CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHH--HHHhhhhc-----CCCC--CHHHHHHHHH
Confidence            3444456688877 5555566665554434456677777765 454444  24456777     9999  9999887775


Q ss_pred             H
Q 016120          369 L  369 (394)
Q Consensus       369 ~  369 (394)
                      +
T Consensus       183 ~  183 (325)
T PRK08699        183 E  183 (325)
T ss_pred             h
Confidence            5

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.022  Score=51.25  Aligned_cols=64  Identities=20%  Similarity=0.243  Sum_probs=40.9

Q ss_pred             HHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHHhhchhcCCCceee
Q 016120          281 KKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLLASLEMENGEKIRR  347 (394)
Q Consensus       281 ~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~~~~~~~~~~~  347 (394)
                      -...+.+.+--++-|.|||..++  +.+.++.+...+.. ..+|+-+++.|..+.++...   .++.+|-
T Consensus       151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i---~pD~vhv  217 (251)
T COG0396         151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI---KPDKVHV  217 (251)
T ss_pred             HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhc---CCCEEEE
Confidence            34455555555778999999998  45555444433321 13466688888888888888   4555544

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.55  E-value=0.025  Score=51.48  Aligned_cols=23  Identities=22%  Similarity=0.147  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|+|||||.+.+..
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G   48 (232)
T cd03218          26 GEIVGLLGPNGAGKTTTFYMIVG   48 (232)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999975

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=96.54  E-value=0.004  Score=57.10  Aligned_cols=53  Identities=17%  Similarity=0.264  Sum_probs=33.7

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+..++-+++||+.-.  +....+.+...+...  ..|..||++|.+...+...
T Consensus       141 laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~  197 (237)
T TIGR00968       141 LARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEV  197 (237)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh
Confidence            3334455677899999877  555555555555432  2266788888888765544

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=96.54  E-value=0.016  Score=52.93  Aligned_cols=91  Identities=11%  Similarity=0.069  Sum_probs=55.9

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc---------------
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS---------------  271 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~---------------  271 (394)
                      +.-.++.|.|.+|+|||+||.++... ..+ +=..++|++..+.  +..+..++ .+++......               
T Consensus        23 ~~g~~~~i~G~~GsGKt~l~~~~~~~-~~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~   97 (234)
T PRK06067         23 PFPSLILIEGDHGTGKSVLSQQFVYG-ALK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG   97 (234)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHHH-HHh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence            45678889999999999999988652 122 2346788887654  44555543 3333211100               


Q ss_pred             cccCc-CHHHHHHHHHHHccC-CeEEEEEeCCC
Q 016120          272 VIIGE-DYQLKKSILRDYLTN-KKYFIVLDDVF  302 (394)
Q Consensus       272 ~~~~~-~~~~~~~~l~~~l~~-kr~LlVlDdv~  302 (394)
                      ..... +.+.+...+.+.+.. +.-++|+|.+-
T Consensus        98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t  130 (234)
T PRK06067         98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT  130 (234)
T ss_pred             cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence            00111 446677777777754 56689999986

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.54  E-value=0.0023  Score=65.05  Aligned_cols=45  Identities=11%  Similarity=0.149  Sum_probs=39.3

Q ss_pred             ccceecccHHHHHHHHhc----CCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIE----GPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|.++.+++|++.|..    -+...+++.++|++|+|||+||+.+.+
T Consensus        77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~  125 (644)
T PRK15455         77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS  125 (644)
T ss_pred             cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence            889999999999999933    234567999999999999999999987

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.53  E-value=0.028  Score=51.32  Aligned_cols=53  Identities=30%  Similarity=0.413  Sum_probs=32.0

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+++||+--.  +......+...+... ..|..||++|.+.+....+
T Consensus       154 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~  209 (236)
T cd03219         154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSL  209 (236)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh
Confidence            3444455677899999876  444444444444321 1456688888887766554

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=96.53  E-value=0.016  Score=52.33  Aligned_cols=53  Identities=19%  Similarity=0.201  Sum_probs=31.6

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+++||+...  +......+...+.....+..||++|.+......+
T Consensus       150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~  204 (221)
T cd03244         150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDS  204 (221)
T ss_pred             HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC
Confidence            3344445667899999887  4444444444444323345688888877655433

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=96.52  E-value=0.042  Score=52.51  Aligned_cols=53  Identities=23%  Similarity=0.198  Sum_probs=32.2

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...|-.++=+|+||+--.  ++..-..+...+.. ...|..||+||.+.+-+..+
T Consensus       149 la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~  204 (306)
T PRK13537        149 LARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL  204 (306)
T ss_pred             HHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence            4455566788999999876  33322223222221 13477899999988765544

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=96.51  E-value=0.027  Score=50.24  Aligned_cols=23  Identities=13%  Similarity=0.050  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|.|||||.+.+..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G   48 (201)
T cd03231          26 GEALQVTGPNGSGKTTLLRILAG   48 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999875

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=96.50  E-value=0.031  Score=51.56  Aligned_cols=53  Identities=9%  Similarity=0.201  Sum_probs=31.6

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+..++-+++||.--.  +...-..+...+... ..|..||++|.+.......
T Consensus       155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~  210 (250)
T PRK11264        155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDV  210 (250)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            3444555677999999876  444334444333221 2366688888887665544

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.50  E-value=0.04  Score=53.96  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +.++|+++|++|+||||++..++.
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~  263 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAW  263 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHH
Confidence            357999999999999999988876

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=96.49  E-value=0.026  Score=50.18  Aligned_cols=24  Identities=13%  Similarity=0.059  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -.+++|+|+.|.|||||.+.+...
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~   49 (198)
T TIGR01189        26 GEALQVTGPNGIGKTTLLRILAGL   49 (198)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            358899999999999999999763

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=96.49  E-value=0.019  Score=54.96  Aligned_cols=96  Identities=6%  Similarity=0.059  Sum_probs=58.1

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccc----cccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc-cc---cCc-C
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVK----FYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS-VI---IGE-D  277 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~---~~~-~  277 (394)
                      +.-.++-|+|.+|+|||+|+..++-.....    ..=..++|++....|++.++. ++++.++...... .+   ... +
T Consensus        94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~  172 (313)
T TIGR02238        94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYT  172 (313)
T ss_pred             cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCC
Confidence            345688899999999999998776422221    112367899998888888865 4566665432110 00   011 2


Q ss_pred             HHHH---HHHHHHHcc-CCeEEEEEeCCCC
Q 016120          278 YQLK---KSILRDYLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       278 ~~~~---~~~l~~~l~-~kr~LlVlDdv~~  303 (394)
                      .+..   ...+...+. ++--|+|+|.+-.
T Consensus       173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSisa  202 (313)
T TIGR02238       173 SEHQMELLDYLAAKFSEEPFRLLIVDSIMA  202 (313)
T ss_pred             HHHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence            3333   333444443 4556899999864

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=96.49  E-value=0.037  Score=57.10  Aligned_cols=52  Identities=23%  Similarity=0.352  Sum_probs=33.1

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...|-.++=+|+||.-.+  +...-..+...+..  .|..||++|.+.......
T Consensus       165 ~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~  218 (530)
T PRK15064        165 LLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSV  218 (530)
T ss_pred             HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhh
Confidence            33444555677899999887  44444555555532  355688888887765544

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=96.48  E-value=0.0076  Score=54.02  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ++.+|+|-|.+|+||||+|+.++.
T Consensus         7 ~~iiIgIaG~SgSGKTTva~~l~~   30 (218)
T COG0572           7 KVIIIGIAGGSGSGKTTVAKELSE   30 (218)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHH
Confidence            468999999999999999999988

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=96.48  E-value=0.035  Score=56.99  Aligned_cols=128  Identities=10%  Similarity=0.042  Sum_probs=65.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCccc-cc--ccC---------------eeEEEEeCC----CCCH--------------
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHV-KF--YFD---------------CLAWVRVSI----AYDF--------------  253 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~---------------~~~wv~vs~----~~~~--------------  253 (394)
                      .+++|+|+.|+|||||.+.++.-..- ..  .|+               ...++.-..    ..++              
T Consensus        38 e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~  117 (510)
T PRK15439         38 EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQAS  117 (510)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHH
Confidence            58999999999999999999753110 00  010               122332111    0111              


Q ss_pred             HHHHHHHHHHhCCCCCCccccCc-CH-HHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEec
Q 016120          254 GKMLDDIIKSVMPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITV  328 (394)
Q Consensus       254 ~~i~~~i~~~l~~~~~~~~~~~~-~~-~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTT  328 (394)
                      ..-..+++..++........... +. +...-.+...|...+-+|+||.-..  +...-..+...+.. ...|..||++|
T Consensus       118 ~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivt  197 (510)
T PRK15439        118 MQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFIS  197 (510)
T ss_pred             HHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence            12234455555553221112222 22 2222334444556677999999776  33333333333322 12366789999


Q ss_pred             CChHHHhhc
Q 016120          329 TDPDLLASL  337 (394)
Q Consensus       329 R~~~v~~~~  337 (394)
                      .+.+.+...
T Consensus       198 Hd~~~~~~~  206 (510)
T PRK15439        198 HKLPEIRQL  206 (510)
T ss_pred             CCHHHHHHh
Confidence            987665544

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.48  E-value=0.028  Score=53.21  Aligned_cols=55  Identities=15%  Similarity=0.166  Sum_probs=33.7

Q ss_pred             HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      -.+...|..++-+|+||+-..  +...-..+...+..-  ..|..||++|.+.+.+...
T Consensus       154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~  212 (290)
T PRK13634        154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARY  212 (290)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            334555667788999999887  343334444433321  2366788888887665443

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=96.47  E-value=0.027  Score=51.20  Aligned_cols=53  Identities=19%  Similarity=0.218  Sum_probs=33.8

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhh
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLAS  336 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~  336 (394)
                      .+...+-.++=+++||+--.  +......+...+..-  ..|..||++|.+.+....
T Consensus       147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~  203 (225)
T PRK10247        147 SLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH  203 (225)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHh
Confidence            34444556677889999876  455555555544432  236678888888876653

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=96.46  E-value=0.033  Score=50.81  Aligned_cols=54  Identities=17%  Similarity=0.255  Sum_probs=33.5

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+..++=+++||+...  +......+...+..-  ..|..||++|.+.......
T Consensus       140 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~  197 (232)
T cd03300         140 AIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTM  197 (232)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            34444556677899999877  455555555444332  2366788888887654443

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=96.46  E-value=0.023  Score=54.58  Aligned_cols=96  Identities=6%  Similarity=0.027  Sum_probs=58.1

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCccccccc----CeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc-------cccC
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYF----DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS-------VIIG  275 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-------~~~~  275 (394)
                      +.-.++-|+|++|+|||+++..++........+    ..++||+....+++.++. ++++.++......       ...+
T Consensus       100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~  178 (317)
T PRK04301        100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYN  178 (317)
T ss_pred             cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCC
Confidence            345688899999999999998887532221111    368899998888877754 4445554322100       0011


Q ss_pred             c-CHHHHHHHHHHHccC--CeEEEEEeCCCC
Q 016120          276 E-DYQLKKSILRDYLTN--KKYFIVLDDVFD  303 (394)
Q Consensus       276 ~-~~~~~~~~l~~~l~~--kr~LlVlDdv~~  303 (394)
                      . ....+...+...+..  +--|||+|-+-.
T Consensus       179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa  209 (317)
T PRK04301        179 SDHQMLLAEKAEELIKEGENIKLVIVDSLTA  209 (317)
T ss_pred             HHHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence            1 222334555555543  445999999864

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.46  E-value=0.028  Score=51.52  Aligned_cols=23  Identities=30%  Similarity=0.234  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|+|||||++.+..
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G   50 (239)
T cd03296          28 GELVALLGPSGSGKTTLLRLIAG   50 (239)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999975

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.46  E-value=0.0084  Score=53.37  Aligned_cols=56  Identities=16%  Similarity=0.109  Sum_probs=31.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC-CCCHHHHHHHHHHHhCC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI-AYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~  266 (394)
                      ++++.++|+.|+||||.+..++..  .+.+=..+..++... .....+-++..++.++.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~v   57 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGV   57 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTE
T ss_pred             CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhcc
Confidence            368999999999999877666652  222222334454432 12234444555555543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.45  E-value=0.099  Score=47.42  Aligned_cols=113  Identities=16%  Similarity=0.148  Sum_probs=69.4

Q ss_pred             ccceecccHHHHHHHHhc--CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120          187 DINEFERGREELFDLLIE--GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      .++|.+...+.+++--..  .+....-|.+||..|.||+.|++.+.+  ++....-.  -|.|.+.              
T Consensus        61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k~--------------  122 (287)
T COG2607          61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDKE--------------  122 (287)
T ss_pred             HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcHH--------------
Confidence            899999888887653321  122344567899999999999999998  55444333  2333221              


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHc--cCCeEEEEEeCCCC--CchhHHHHHhhCCCC---CCCcEEEEecCC
Q 016120          265 MPPSRVSVIIGEDYQLKKSILRDYL--TNKKYFIVLDDVFD--NSEIWSDLEELLPDD---ENGSRVLITVTD  330 (394)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~---~~gs~IivTTR~  330 (394)
                                  +...+- .+.+.|  ..+||.|..||..-  ....++.++..|-.+   .+...++..|.|
T Consensus       123 ------------dl~~Lp-~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN  182 (287)
T COG2607         123 ------------DLATLP-DLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN  182 (287)
T ss_pred             ------------HHhhHH-HHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence                        222222 222223  35799999999965  456778888777644   333444444444

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.45  E-value=0.042  Score=52.03  Aligned_cols=55  Identities=16%  Similarity=0.222  Sum_probs=34.2

Q ss_pred             HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      -.+...|..++=+|+||+.-.  +......+...+..- ..|..||++|.+.+.+...
T Consensus       153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~  210 (288)
T PRK13643        153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADY  210 (288)
T ss_pred             HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHh
Confidence            334445555677899999876  444445554444321 2366799999988755443

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.44  E-value=0.036  Score=51.94  Aligned_cols=54  Identities=17%  Similarity=0.308  Sum_probs=32.8

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...|-.++-+++||+-..  +......+...+..- ..|..||++|.+.+.....
T Consensus       146 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  202 (271)
T PRK13638        146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEI  202 (271)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            34444556778899999877  444444444443321 2366788888887665443

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.019  Score=58.60  Aligned_cols=155  Identities=17%  Similarity=0.174  Sum_probs=88.7

Q ss_pred             ccceecccHHHHHHHHhc---C--------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIE---G--------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~---~--------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|.+...+.+.+.+..   .        -...+.+-++|++|.|||.||+.+.+  ..+.+|-.+.+-          
T Consensus       243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~----------  310 (494)
T COG0464         243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGS----------  310 (494)
T ss_pred             hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCH----------
Confidence            566666555555444432   1        13455788999999999999999999  555555332211          


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-----C-c------hhHHHHHhhCCCCCCCcE
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-----N-S------EIWSDLEELLPDDENGSR  323 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-----~-~------~~~~~l~~~l~~~~~gs~  323 (394)
                         +++...         +..+...+........+..++.|.+|.+..     . .      .....+...+......+.
T Consensus       311 ---~l~sk~---------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~  378 (494)
T COG0464         311 ---ELLSKW---------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG  378 (494)
T ss_pred             ---HHhccc---------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence               111111         111344445555555567899999999975     1 1      233444444433333333


Q ss_pred             --EEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          324 --VLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       324 --IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                        ||-||-.++.....-..  .-...+.     +++-  +.++....|..+..
T Consensus       379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~-----v~~p--d~~~r~~i~~~~~~  424 (494)
T COG0464         379 VLVIAATNRPDDLDPALLRPGRFDRLIY-----VPLP--DLEERLEIFKIHLR  424 (494)
T ss_pred             eEEEecCCCccccCHhhcccCccceEee-----cCCC--CHHHHHHHHHHHhc
Confidence              44455554433321001  2255666     8888  89999999999865

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.44  E-value=0.036  Score=52.15  Aligned_cols=53  Identities=19%  Similarity=0.278  Sum_probs=32.9

Q ss_pred             HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHh
Q 016120          283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLA  335 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~  335 (394)
                      -.+...|-.++-+|+||+...  +...-..+...+..-  ..|..||++|.+.+...
T Consensus       146 l~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~  202 (277)
T PRK13652        146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVP  202 (277)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence            344555666778999999887  444444554444321  23567888888876554

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.0029  Score=65.26  Aligned_cols=159  Identities=18%  Similarity=0.183  Sum_probs=89.6

Q ss_pred             ccceecccHHHHHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG----PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIK  262 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~  262 (394)
                      +=+|.++.+++|++.|--.    +-.-+++++||++|||||.|++.|+.  .....|-.   ++++.--|..+|      
T Consensus       324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEI------  392 (782)
T COG0466         324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEI------  392 (782)
T ss_pred             cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHh------
Confidence            5689999999999998532    23347999999999999999999998  56655522   233333232221      


Q ss_pred             HhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C----chhHHHHHhhCCCCCC-------------CcEE
Q 016120          263 SVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N----SEIWSDLEELLPDDEN-------------GSRV  324 (394)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~----~~~~~~l~~~l~~~~~-------------gs~I  324 (394)
                        .+...  ..+..-...+.+.+++. +.+.-+++||.|+. .    .+--..+...|..-.|             =|+|
T Consensus       393 --RGHRR--TYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V  467 (782)
T COG0466         393 --RGHRR--TYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV  467 (782)
T ss_pred             --ccccc--cccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence              11110  00111222233333222 34677899999975 1    1111223332221111             1454


Q ss_pred             E-EecCCh-H-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          325 L-ITVTDP-D-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       325 i-vTTR~~-~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                      + |||-|. + +...+  .....+++     +.+-  ..+|=.+.-+++
T Consensus       468 mFiaTANsl~tIP~PL--lDRMEiI~-----lsgY--t~~EKl~IAk~~  507 (782)
T COG0466         468 MFIATANSLDTIPAPL--LDRMEVIR-----LSGY--TEDEKLEIAKRH  507 (782)
T ss_pred             EEEeecCccccCChHH--hcceeeee-----ecCC--ChHHHHHHHHHh
Confidence            4 455553 2 33333  24578888     9988  888877776665

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=96.43  E-value=0.036  Score=54.08  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.+..
T Consensus        25 e~~~l~G~nGsGKSTLl~~iaG   46 (352)
T PRK11144         25 GITAIFGRSGAGKTSLINAISG   46 (352)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4899999999999999999975

>PRK13409 putative ATPase RIL; Provisional

Probab=96.43  E-value=0.024  Score=59.16  Aligned_cols=128  Identities=13%  Similarity=0.047  Sum_probs=66.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCccc-cc--ccCeeEEEEeCCC------CCHHH-------------HHHHHHHHhCC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHV-KF--YFDCLAWVRVSIA------YDFGK-------------MLDDIIKSVMP  266 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~~~~wv~vs~~------~~~~~-------------i~~~i~~~l~~  266 (394)
                      -.+++|+|..|+|||||++.++....- ..  .++..+. .+.+.      .++.+             ...++++.++.
T Consensus       365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~-y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l  443 (590)
T PRK13409        365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQL  443 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEE-EecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCC
Confidence            358999999999999999999863211 00  0111110 11121      11211             12334444443


Q ss_pred             CCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          267 PSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       267 ~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      .......... +..+. .-.+...|..++=+++||.--.  +...-..+...+..-  ..|..||++|.+...+...
T Consensus       444 ~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~  520 (590)
T PRK13409        444 ERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYI  520 (590)
T ss_pred             HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            2211122333 33332 2334455666788999999766  343334444433321  2356688888888766655

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=96.43  E-value=0.034  Score=51.06  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|.|||||++.++.
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G   49 (242)
T cd03295          28 EFLVLIGPSGSGKTTTMKMINR   49 (242)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999999975

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=96.42  E-value=0.032  Score=57.14  Aligned_cols=64  Identities=20%  Similarity=0.237  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcCCCceee
Q 016120          278 YQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRR  347 (394)
Q Consensus       278 ~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~  347 (394)
                      -....-.|.+.|-.++=+|+||.=-+  +.+....|...|.. -+| .+||.|.++.....+    +..+++
T Consensus       157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~-~~g-tviiVSHDR~FLd~V----~t~I~~  222 (530)
T COG0488         157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR-YPG-TVIVVSHDRYFLDNV----ATHILE  222 (530)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-CCC-cEEEEeCCHHHHHHH----hhheEE
Confidence            34455667777777888999999877  55555667677653 335 699999999888887    345555

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.42  E-value=0.032  Score=49.43  Aligned_cols=23  Identities=17%  Similarity=0.130  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .+++|+|..|.|||||++.+..-
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~   49 (195)
T PRK13541         27 AITYIKGANGCGKSSLLRMIAGI   49 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            48899999999999999999763

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.42  E-value=0.029  Score=52.78  Aligned_cols=55  Identities=16%  Similarity=0.143  Sum_probs=34.9

Q ss_pred             HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      -.+...+-.++-+|+||+...  +...-..+...+..-  ..|..||++|.+......+
T Consensus       149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~  207 (279)
T PRK13650        149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALS  207 (279)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC
Confidence            344455566788999999887  444445555444322  2367788888887665433

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.42  E-value=0.024  Score=51.25  Aligned_cols=51  Identities=14%  Similarity=0.310  Sum_probs=31.5

Q ss_pred             HHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          287 DYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       287 ~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      ..+-.++=+++||+--.  +......+...+... ..|..||++|.+.......
T Consensus       145 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~  198 (222)
T cd03224         145 RALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI  198 (222)
T ss_pred             HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence            33445567899999876  444444444444322 2467799999888765554

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=96.42  E-value=0.032  Score=54.75  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.+..
T Consensus        30 e~~~l~G~nGsGKSTLL~~iaG   51 (369)
T PRK11000         30 EFVVFVGPSGCGKSTLLRMIAG   51 (369)
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            5889999999999999999975

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=96.41  E-value=0.027  Score=52.05  Aligned_cols=53  Identities=11%  Similarity=0.253  Sum_probs=32.0

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+++||+--.  +......+...+...  ..|..||++|.+.+.....
T Consensus       157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~  213 (252)
T TIGR03005       157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREF  213 (252)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence            4444455667899999876  444444454444322  2366788888887655443

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=96.41  E-value=0.029  Score=57.85  Aligned_cols=132  Identities=12%  Similarity=0.029  Sum_probs=88.4

Q ss_pred             ccceecccHHHHHHHHhcC--C-CCceEEEEEcCCCccHHHHHHHHhcCcc------cccccCeeEEEEeCCCCCHHHHH
Q 016120          187 DINEFERGREELFDLLIEG--P-SGLAVVAILDSSGFDKTVFTADTYNNDH------VKFYFDCLAWVRVSIAYDFGKML  257 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~--~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~------~~~~F~~~~wv~vs~~~~~~~i~  257 (394)
                      .+-+|+.+..+|-..+..-  + ..-+.+-|.|.+|+|||..+..|.+...      --..|+ .+.|+.-.-..+.+++
T Consensus       397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y  475 (767)
T KOG1514|consen  397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIY  475 (767)
T ss_pred             cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHH
Confidence            5677999999998887542  2 2334788999999999999999987322      112343 3455555556789999


Q ss_pred             HHHHHHhCCCCCCccccCcCHHHHHHHHHHHcc-----CCeEEEEEeCCCC-CchhHHHHHhhCCC-CCCCcEEEE
Q 016120          258 DDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLT-----NKKYFIVLDDVFD-NSEIWSDLEELLPD-DENGSRVLI  326 (394)
Q Consensus       258 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~-~~~~~~~l~~~l~~-~~~gs~Iiv  326 (394)
                      ..|...+.+...       ......+.|..+..     .+++++++|++.. -...-+-+...|.+ ..++||++|
T Consensus       476 ~~I~~~lsg~~~-------~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv  544 (767)
T KOG1514|consen  476 EKIWEALSGERV-------TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV  544 (767)
T ss_pred             HHHHHhcccCcc-------cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEE
Confidence            999999988755       66667777777764     2468888898765 11111333344432 345777655

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=96.41  E-value=0.037  Score=51.41  Aligned_cols=47  Identities=19%  Similarity=0.252  Sum_probs=29.8

Q ss_pred             CCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          291 NKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       291 ~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      .++-+++||+--.  +......+...+...  ..|..||++|.+.......
T Consensus       157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~  207 (258)
T PRK13548        157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARY  207 (258)
T ss_pred             CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence            4678999999877  444444444444321  2356688888887665543

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=96.40  E-value=0.0047  Score=55.19  Aligned_cols=120  Identities=13%  Similarity=0.118  Sum_probs=58.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHc
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL  289 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l  289 (394)
                      .+++|+|+.|.||||+.+.+.... +..+..  .|+.... ... ....++...++.......... ....-...+...+
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~~~~-~~~~~g--~~~~~~~-~~i-~~~dqi~~~~~~~d~i~~~~s-~~~~e~~~l~~i~  103 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIGLAV-LLAQIG--CFVPAES-ASI-PLVDRIFTRIGAEDSISDGRS-TFMAELLELKEIL  103 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHHHHH-HHHHcC--CCccccc-ccc-CCcCEEEEEecCcccccCCce-eHHHHHHHHHHHH
Confidence            689999999999999999997321 100000  1111000 000 001111111111111000111 1112222333333


Q ss_pred             --cCCeEEEEEeCCCC--CchhHH----HHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          290 --TNKKYFIVLDDVFD--NSEIWS----DLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       290 --~~kr~LlVlDdv~~--~~~~~~----~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                        ...+-++++|..-.  +...-.    .+...+.  ..++.+|++|.+.++...+
T Consensus       104 ~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~--~~~~~vi~~tH~~~~~~~~  157 (202)
T cd03243         104 SLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL--EKGCRTLFATHFHELADLP  157 (202)
T ss_pred             HhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCeEEEECChHHHHHHh
Confidence              35789999999866  222111    2222222  2367799999999888877

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.40  E-value=0.044  Score=50.03  Aligned_cols=53  Identities=17%  Similarity=0.251  Sum_probs=33.8

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+..++-+++||+--.  +...-..+...+...  ..|..||++|.+.+.+..+
T Consensus       156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~  212 (233)
T PRK11629        156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM  212 (233)
T ss_pred             HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence            4444556778899999876  444445555444432  2466788888887765544

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]

Probab=96.39  E-value=0.029  Score=57.56  Aligned_cols=131  Identities=18%  Similarity=0.220  Sum_probs=72.6

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCccHHH-HHHHHhcCcccccccCeeEEEEeCCCC--CHHHHHHHHHHHhCCCCCCc
Q 016120          195 REELFDLLIEGPSGLAVVAILDSSGFDKTV-FTADTYNNDHVKFYFDCLAWVRVSIAY--DFGKMLDDIIKSVMPPSRVS  271 (394)
Q Consensus       195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTt-LA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~  271 (394)
                      .++|++.+..    ..||.|+|..|+|||| |+|.+|.+--..+     --|.+.++-  ....+.+.+.+.++..-...
T Consensus       361 R~~ll~~ir~----n~vvvivgETGSGKTTQl~QyL~edGY~~~-----GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~  431 (1042)
T KOG0924|consen  361 RDQLLSVIRE----NQVVVIVGETGSGKTTQLAQYLYEDGYADN-----GMIGCTQPRRVAAISVAKRVAEEMGVTLGDT  431 (1042)
T ss_pred             HHHHHHHHhh----CcEEEEEecCCCCchhhhHHHHHhcccccC-----CeeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence            4555555544    3689999999999996 8999988522111     123333333  34455666666665543321


Q ss_pred             c----ccCc------------CHHHHHHHHHHHccCCeEEEEEeCCCC---CchhHHHHHhhCCCCCCCcEEEEecCChH
Q 016120          272 V----IIGE------------DYQLKKSILRDYLTNKKYFIVLDDVFD---NSEIWSDLEELLPDDENGSRVLITVTDPD  332 (394)
Q Consensus       272 ~----~~~~------------~~~~~~~~l~~~l~~kr~LlVlDdv~~---~~~~~~~l~~~l~~~~~gs~IivTTR~~~  332 (394)
                      .    .+++            +---+.+.|.+..-.|=-.+|+|....   |.+.+--|..........-|+||||-.-+
T Consensus       432 VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~  511 (1042)
T KOG0924|consen  432 VGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMD  511 (1042)
T ss_pred             cceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecccc
Confidence            0    0111            112233333333334556889999887   44433333332223344679999998754


Q ss_pred             HH
Q 016120          333 LL  334 (394)
Q Consensus       333 v~  334 (394)
                      .-
T Consensus       512 a~  513 (1042)
T KOG0924|consen  512 AQ  513 (1042)
T ss_pred             HH
Confidence            33

>PRK10867 signal recognition particle protein; Provisional

Probab=96.39  E-value=0.021  Score=56.92  Aligned_cols=24  Identities=17%  Similarity=0.166  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...++.++|.+|+||||.+..++.
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~  122 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAK  122 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHH
Confidence            467999999999999997766654

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.38  E-value=0.032  Score=52.21  Aligned_cols=23  Identities=13%  Similarity=0.081  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|.|||||.+.+..
T Consensus        35 Ge~~~I~G~nGsGKSTLl~~i~G   57 (269)
T PRK13648         35 GQWTSIVGHNGSGKSTIAKLMIG   57 (269)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35889999999999999999975

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=96.38  E-value=0.041  Score=53.39  Aligned_cols=54  Identities=15%  Similarity=0.262  Sum_probs=33.5

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...|...+-+|++|.--.  |+..-..+...+...  ..|..||++|.+.+++...
T Consensus       150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~  207 (343)
T TIGR02314       150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRI  207 (343)
T ss_pred             HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            34445566778899999876  343334444433322  2366788888888776554

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=96.38  E-value=0.027  Score=54.52  Aligned_cols=103  Identities=8%  Similarity=0.029  Sum_probs=60.9

Q ss_pred             HHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc----ccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc-cc-
Q 016120          200 DLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF----YFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS-VI-  273 (394)
Q Consensus       200 ~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~-  273 (394)
                      +.|..+=+.-.++-|+|.+|+|||+|+..++-......    .-..++|++....|.+.++ .+|++.++...... .. 
T Consensus       114 ~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i  192 (342)
T PLN03186        114 KILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENV  192 (342)
T ss_pred             HhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccce
Confidence            33433323456888999999999999987764222111    1126899999999888776 46677665432110 00 


Q ss_pred             --cCc-CHHHHHHHH---HHHc-cCCeEEEEEeCCCC
Q 016120          274 --IGE-DYQLKKSIL---RDYL-TNKKYFIVLDDVFD  303 (394)
Q Consensus       274 --~~~-~~~~~~~~l---~~~l-~~kr~LlVlDdv~~  303 (394)
                        ... +.+.+...+   ...+ ..+--|||+|-+-.
T Consensus       193 ~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~a  229 (342)
T PLN03186        193 AYARAYNTDHQSELLLEAASMMAETRFALMIVDSATA  229 (342)
T ss_pred             EEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence              111 333333333   2333 34567999999864

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=96.38  E-value=0.047  Score=57.64  Aligned_cols=53  Identities=21%  Similarity=0.295  Sum_probs=33.7

Q ss_pred             HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      -.+...|-.++=+|+||.-.+  |...-..+...+... .+ .||++|.+......+
T Consensus       158 v~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~-~~-tviivsHd~~~l~~~  212 (638)
T PRK10636        158 LNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY-QG-TLILISHDRDFLDPI  212 (638)
T ss_pred             HHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHh
Confidence            344455566777999999877  444444455555433 23 588888988766655

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.37  E-value=0.037  Score=51.95  Aligned_cols=53  Identities=28%  Similarity=0.335  Sum_probs=31.9

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhh
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLAS  336 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~  336 (394)
                      .+...+...+=+++||+...  +......+...+..- ..|..||++|.+.+.+..
T Consensus       147 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~  202 (275)
T PRK13639        147 AIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPV  202 (275)
T ss_pred             HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence            34444556678899999887  454445554444321 235668888877665443

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.37  E-value=0.024  Score=50.22  Aligned_cols=23  Identities=22%  Similarity=0.190  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|.|||||.+.+..
T Consensus        33 Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          33 GTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            35889999999999999999985

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=96.37  E-value=0.032  Score=54.20  Aligned_cols=53  Identities=17%  Similarity=0.288  Sum_probs=33.6

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...|..++-+|+||.--.  +......+...+..-  ..|..||++|.+.+.+..+
T Consensus       151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~  207 (343)
T PRK11153        151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRI  207 (343)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            4444556677899999876  444445555444432  2366788888887766554

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=96.37  E-value=0.035  Score=55.35  Aligned_cols=55  Identities=24%  Similarity=0.322  Sum_probs=33.2

Q ss_pred             HHHHHHccCCeEEEEEeCCCCCch--hHHHHHhhCC-CCCCCcEEEEecCChHHHhhc
Q 016120          283 SILRDYLTNKKYFIVLDDVFDNSE--IWSDLEELLP-DDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~~~~--~~~~l~~~l~-~~~~gs~IivTTR~~~v~~~~  337 (394)
                      --|.+.+-|.++|+|||.=..|.+  -=..+...+. -...|+.+|+.|..+.+...+
T Consensus       481 IaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~  538 (580)
T COG4618         481 IALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV  538 (580)
T ss_pred             HHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence            346667789999999998765221  1122333332 234566677777777766655

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.36  E-value=0.015  Score=54.96  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +..+++|+|++|+||||++..+..
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~  216 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAA  216 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356999999999999999988876

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=96.36  E-value=0.044  Score=51.29  Aligned_cols=54  Identities=19%  Similarity=0.270  Sum_probs=32.9

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+-.++-+|+||+--.  +......+...+...  ..|+.||++|.+......+
T Consensus       161 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~  218 (268)
T PRK10419        161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERF  218 (268)
T ss_pred             HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHh
Confidence            34455556778999999876  444344444444322  2366788888887655543

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=96.35  E-value=0.064  Score=49.05  Aligned_cols=53  Identities=13%  Similarity=0.193  Sum_probs=32.9

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+..++=+++||+...  +......+...+.....|..||++|.+......+
T Consensus       150 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~  204 (238)
T cd03249         150 IARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNA  204 (238)
T ss_pred             HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC
Confidence            4444555667899999877  4444444544443222466788888887766533

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.35  E-value=0.038  Score=52.02  Aligned_cols=53  Identities=17%  Similarity=0.225  Sum_probs=32.9

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+..++-+|+||+--.  +......+...+..- ..|..||++|.+.+.+...
T Consensus       156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~  211 (280)
T PRK13649        156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANY  211 (280)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHh
Confidence            4444556778999999877  444444444443321 2366788888887755443

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.016  Score=54.60  Aligned_cols=81  Identities=7%  Similarity=0.099  Sum_probs=54.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccc--cccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVK--FYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR  286 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~  286 (394)
                      .++|.++|++|.|||+|++.++++..++  +.|....-+.+..    ..++.++...-+.          -...+-+.+.
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsESgK----------lV~kmF~kI~  242 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSESGK----------LVAKMFQKIQ  242 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhhhh----------HHHHHHHHHH
Confidence            5788999999999999999999975444  4565555555533    3444444432111          5667778888


Q ss_pred             HHccCCe--EEEEEeCCCC
Q 016120          287 DYLTNKK--YFIVLDDVFD  303 (394)
Q Consensus       287 ~~l~~kr--~LlVlDdv~~  303 (394)
                      +.+.++.  .++.+|.|..
T Consensus       243 ELv~d~~~lVfvLIDEVES  261 (423)
T KOG0744|consen  243 ELVEDRGNLVFVLIDEVES  261 (423)
T ss_pred             HHHhCCCcEEEEEeHHHHH
Confidence            8887665  4556888864

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.33  E-value=0.0032  Score=53.33  Aligned_cols=23  Identities=17%  Similarity=0.177  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..-|.|.||+|+||||+++.+.+
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e   27 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAE   27 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHH
Confidence            34688999999999999999987

>PTZ00301 uridine kinase; Provisional

Probab=96.33  E-value=0.0043  Score=55.86  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|+|.|.+|+||||||+.+..
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~   25 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVS   25 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHH
Confidence            57999999999999999998865

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.33  E-value=0.0027  Score=51.77  Aligned_cols=20  Identities=20%  Similarity=0.253  Sum_probs=18.7

Q ss_pred             EEEEcCCCccHHHHHHHHhc
Q 016120          212 VAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~  231 (394)
                      |.|.|..|+||||+|+.+..
T Consensus         1 I~i~G~~GsGKtTia~~L~~   20 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAE   20 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999987

...

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.32  E-value=0.043  Score=54.87  Aligned_cols=24  Identities=17%  Similarity=0.131  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +..++.++|..|+||||+|..++.
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~  117 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLAR  117 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            467999999999999999988876

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=96.32  E-value=0.04  Score=52.58  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|..|.|||||++.+..
T Consensus        34 e~v~iiG~nGsGKSTLl~~L~G   55 (305)
T PRK13651         34 EFIAIIGQTGSGKTTFIEHLNA   55 (305)
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            4899999999999999999974

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=96.32  E-value=0.025  Score=50.64  Aligned_cols=59  Identities=17%  Similarity=0.329  Sum_probs=37.0

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHH-HHHhhCCCCC-C-CcEEEEecCChHHHhhchhcCCCceee
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWS-DLEELLPDDE-N-GSRVLITVTDPDLLASLEMENGEKIRR  347 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~-~l~~~l~~~~-~-gs~IivTTR~~~v~~~~~~~~~~~~~~  347 (394)
                      .+...+..++-+++||+.-.  +..... .+...+.... . |..||++|.+.+....+     +.++.
T Consensus       131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~-----d~i~~  194 (204)
T cd03240         131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA-----DHIYR  194 (204)
T ss_pred             HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhC-----CEEEE
Confidence            34555667888999999887  444444 4444443222 2 55688888888766544     45555

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=96.32  E-value=0.056  Score=51.52  Aligned_cols=22  Identities=14%  Similarity=0.229  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|.|||||.+.+..
T Consensus        31 e~~~l~G~NGaGKSTLl~~l~G   52 (303)
T TIGR01288        31 ECFGLLGPNGAGKSTIARMLLG   52 (303)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999975

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=96.31  E-value=0.054  Score=50.17  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|..|+|||||++.+..
T Consensus        30 e~~~l~G~nGsGKSTLl~~l~G   51 (254)
T PRK10418         30 RVLALVGGSGSGKSLTCAAALG   51 (254)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4889999999999999999975

>TIGR00959 ffh signal recognition particle protein

Probab=96.31  E-value=0.048  Score=54.38  Aligned_cols=24  Identities=17%  Similarity=0.106  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...++.++|.+|+||||.|..++.
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~  121 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAY  121 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHH
Confidence            367999999999999999776655

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.31  E-value=0.049  Score=51.44  Aligned_cols=55  Identities=16%  Similarity=0.209  Sum_probs=33.8

Q ss_pred             HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      -.+...|..++-+++||....  +...-..+...+..-  ..|..||++|.+.+.+..+
T Consensus       154 v~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~  212 (286)
T PRK13646        154 IAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARY  212 (286)
T ss_pred             HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence            344555666778899999877  343334444444321  3467788888887655433

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=96.31  E-value=0.033  Score=51.74  Aligned_cols=54  Identities=20%  Similarity=0.248  Sum_probs=33.8

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+-.++-+++||+--.  +......+...+...  ..|..||++|.+...+...
T Consensus       161 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~  218 (258)
T PRK11701        161 QIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLL  218 (258)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence            34444566788999999877  444444444444321  2366788888888766644

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=96.31  E-value=0.036  Score=51.75  Aligned_cols=24  Identities=13%  Similarity=0.152  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -.+++|+|+.|.|||||.+.+..-
T Consensus        50 Ge~~~liG~NGsGKSTLlk~L~Gl   73 (264)
T PRK13546         50 GDVIGLVGINGSGKSTLSNIIGGS   73 (264)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358899999999999999999873

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=96.30  E-value=0.063  Score=47.79  Aligned_cols=20  Identities=20%  Similarity=0.255  Sum_probs=18.7

Q ss_pred             EEEEEcCCCccHHHHHHHHh
Q 016120          211 VVAILDSSGFDKTVFTADTY  230 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~  230 (394)
                      +++|+|+.|+|||||++.++
T Consensus        24 ~~~i~G~nGsGKStll~al~   43 (197)
T cd03278          24 LTAIVGPNGSGKSNIIDAIR   43 (197)
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            78999999999999999886

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.30  E-value=0.0029  Score=56.19  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +|+|.|.+|+||||+|+.+..
T Consensus         1 IIgI~G~sgSGKTTla~~L~~   21 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQ   21 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999987

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=96.29  E-value=0.028  Score=57.67  Aligned_cols=46  Identities=13%  Similarity=0.063  Sum_probs=38.3

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .++|....+.++.+.+..-.....-|.|+|..|+|||++|+.+++.
T Consensus       188 ~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~  233 (509)
T PRK05022        188 EMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAA  233 (509)
T ss_pred             ceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence            7899999998888888664444556779999999999999999873

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=96.29  E-value=0.048  Score=50.28  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|+|||||++.+..
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G   49 (247)
T TIGR00972        27 NQVTALIGPSGCGKSTLLRSLNR   49 (247)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999999974

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=96.29  E-value=0.046  Score=53.37  Aligned_cols=22  Identities=32%  Similarity=0.280  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.+..
T Consensus        24 ei~~l~G~nGsGKSTLl~~iaG   45 (354)
T TIGR02142        24 GVTAIFGRSGSGKTTLIRLIAG   45 (354)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4889999999999999999975

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=96.28  E-value=0.044  Score=50.87  Aligned_cols=54  Identities=9%  Similarity=0.245  Sum_probs=34.0

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...|-.++=+++||.--.  +......+...+... ..|..||++|.+.......
T Consensus       162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~  218 (257)
T PRK10619        162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV  218 (257)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            34444555677899999876  444445554444322 2367788888888766654

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=96.28  E-value=0.028  Score=53.88  Aligned_cols=105  Identities=10%  Similarity=-0.016  Sum_probs=59.9

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc----ccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc-c
Q 016120          198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF----YFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS-V  272 (394)
Q Consensus       198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~  272 (394)
                      +-+.|..+=+.-.++.|+|.+|+|||||+..++.......    .-..++|++-...+...+ +.++++.++...... .
T Consensus        85 lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~  163 (316)
T TIGR02239        85 LDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLD  163 (316)
T ss_pred             HHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhc
Confidence            3333433324567889999999999999988864211111    113568998888777776 344555554432110 0


Q ss_pred             c---cCc-CHHHH---HHHHHHHcc-CCeEEEEEeCCCC
Q 016120          273 I---IGE-DYQLK---KSILRDYLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       273 ~---~~~-~~~~~---~~~l~~~l~-~kr~LlVlDdv~~  303 (394)
                      .   ... +.+.+   ...+...+. .+--|||+|-+-.
T Consensus       164 ~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~a  202 (316)
T TIGR02239       164 NVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATA  202 (316)
T ss_pred             cEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence            0   011 23333   333333343 3566999999864

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=96.28  E-value=0.04  Score=51.38  Aligned_cols=53  Identities=21%  Similarity=0.241  Sum_probs=32.3

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++=+++||.--.  +...-..+...+..-  ..|..||++|.+.+.....
T Consensus       154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~  210 (265)
T PRK10253        154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRY  210 (265)
T ss_pred             HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            3344455677899999876  444444444444321  2366788999888755444

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.28  E-value=0.071  Score=49.19  Aligned_cols=53  Identities=13%  Similarity=0.194  Sum_probs=31.9

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+++||+--.  +...-..+...+.....|..||++|.+.......
T Consensus       157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~  211 (250)
T PRK14247        157 IARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARI  211 (250)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            3334455678899999876  4444444444333222356788888887765544

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=96.28  E-value=0.1  Score=50.52  Aligned_cols=156  Identities=13%  Similarity=0.134  Sum_probs=87.8

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc---ccccccCe-----eEEEEeCCCCCHHHHHHHHHHHhC
Q 016120          194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND---HVKFYFDC-----LAWVRVSIAYDFGKMLDDIIKSVM  265 (394)
Q Consensus       194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~F~~-----~~wv~vs~~~~~~~i~~~i~~~l~  265 (394)
                      ..+++.+.+..+ .-..-+.+.|+.|+||+++|..+....   .-...-.|     +-++..+..+|+..+        .
T Consensus        10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~   80 (334)
T PRK07993         10 DYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------T   80 (334)
T ss_pred             HHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------e
Confidence            345566666543 235577799999999999998765421   00000011     012222222222111        0


Q ss_pred             CCCCCccccCcCHHHHHHHHHH---H-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchh
Q 016120          266 PPSRVSVIIGEDYQLKKSILRD---Y-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEM  339 (394)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~---~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~  339 (394)
                      +... ...+  ..++..+....   . ..+++=++|+|+.+. +...-+.|...+-.-..++.+|++|.++ .+....  
T Consensus        81 p~~~-~~~I--~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI--  155 (334)
T PRK07993         81 PEKG-KSSL--GVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATL--  155 (334)
T ss_pred             cccc-cccC--CHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH--
Confidence            0000 0001  33333332222   2 135677899999998 6777788888887666677777777664 455454  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                      .+....+.     +.++  +.++....+.+.
T Consensus       156 rSRCq~~~-----~~~~--~~~~~~~~L~~~  179 (334)
T PRK07993        156 RSRCRLHY-----LAPP--PEQYALTWLSRE  179 (334)
T ss_pred             Hhcccccc-----CCCC--CHHHHHHHHHHc
Confidence            24455677     9999  999888777554

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.27  E-value=0.0035  Score=56.27  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=22.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +..+|+|.|.+|+||||||+.++..
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999999873

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.27  E-value=0.051  Score=50.98  Aligned_cols=24  Identities=25%  Similarity=0.242  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +.+++.++|++|+||||++..++.
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~   94 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLAN   94 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            468999999999999999888876

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=96.26  E-value=0.013  Score=53.91  Aligned_cols=23  Identities=22%  Similarity=0.156  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|+|||||.+.+..
T Consensus        29 Ge~~~l~G~nGsGKSTLl~~l~G   51 (241)
T PRK10895         29 GEIVGLLGPNGAGKTTTFYMVVG   51 (241)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            35889999999999999999976

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=96.26  E-value=0.039  Score=56.33  Aligned_cols=23  Identities=13%  Similarity=0.094  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|+|||||.+.++.
T Consensus        29 Ge~~~liG~nGsGKSTLl~~l~G   51 (490)
T PRK10938         29 GDSWAFVGANGSGKSALARALAG   51 (490)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35789999999999999999975

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=96.26  E-value=0.027  Score=53.92  Aligned_cols=96  Identities=8%  Similarity=0.069  Sum_probs=57.1

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCccccc----ccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------ccccC
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKF----YFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV-------SVIIG  275 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------~~~~~  275 (394)
                      +.-.++-|+|.+|+||||++..++.......    .=..++||+....++..++. ++++.++.....       .....
T Consensus        93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~  171 (310)
T TIGR02236        93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYN  171 (310)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCC
Confidence            3456888999999999999988875322211    01268999988888877654 445554433110       00011


Q ss_pred             c-CHHHHHHHHHHHccC---CeEEEEEeCCCC
Q 016120          276 E-DYQLKKSILRDYLTN---KKYFIVLDDVFD  303 (394)
Q Consensus       276 ~-~~~~~~~~l~~~l~~---kr~LlVlDdv~~  303 (394)
                      . ....+.+.+.+.+..   +.-++|+|.+-.
T Consensus       172 ~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa  203 (310)
T TIGR02236       172 SNHQMLLVEKAEDLIKELNNPVKLLIVDSLTS  203 (310)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence            1 112234445555543   245999999865

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=96.26  E-value=0.026  Score=51.82  Aligned_cols=23  Identities=26%  Similarity=0.238  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|.|||||++.+..
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~l~G   49 (240)
T PRK09493         27 GEVVVIIGPSGSGKSTLLRCINK   49 (240)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999975

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.26  E-value=0.028  Score=48.72  Aligned_cols=21  Identities=24%  Similarity=0.246  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ++.++|++|+||||++..+..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~   22 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLAL   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999998876

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.26  E-value=0.045  Score=49.73  Aligned_cols=53  Identities=17%  Similarity=0.261  Sum_probs=32.6

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+...+=+++||+--.  +....+.+...+...  ..|..||++|.+......+
T Consensus       157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~  213 (228)
T PRK10584        157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARC  213 (228)
T ss_pred             HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC
Confidence            3344445567899999876  444445555544322  2356788898887765433

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=96.24  E-value=0.075  Score=48.57  Aligned_cols=53  Identities=13%  Similarity=0.162  Sum_probs=33.1

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++=+++||+-..  +......+...+.....|..||++|.+.+....+
T Consensus       149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~  203 (237)
T cd03252         149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNA  203 (237)
T ss_pred             HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhC
Confidence            3334445667899999877  4444444444443323366789999888766543

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=96.24  E-value=0.009  Score=58.34  Aligned_cols=22  Identities=14%  Similarity=0.252  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.+..
T Consensus        31 e~~~llG~sGsGKSTLLr~iaG   52 (356)
T PRK11650         31 EFIVLVGPSGCGKSTLLRMVAG   52 (356)
T ss_pred             CEEEEECCCCCcHHHHHHHHHC
Confidence            4789999999999999999975

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=96.24  E-value=0.01  Score=55.40  Aligned_cols=54  Identities=17%  Similarity=0.204  Sum_probs=32.4

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+..++-+++||+--.  +...-..+...+...  ..|..||++|.+.......
T Consensus       157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~  214 (265)
T PRK10575        157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARY  214 (265)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            34445556788999999876  444434444433321  2356788888887655433

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.23  E-value=0.034  Score=54.94  Aligned_cols=23  Identities=26%  Similarity=0.176  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..++.++|++|+||||++..+..
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988875

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=96.22  E-value=0.036  Score=51.30  Aligned_cols=54  Identities=20%  Similarity=0.330  Sum_probs=32.8

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+-.++-+++||+.-.  +...-..+...+...  ..|..||++|.+...+...
T Consensus       163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~  220 (255)
T PRK11300        163 EIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGI  220 (255)
T ss_pred             HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHh
Confidence            34444556788999999877  343334444433321  2366788888888766554

>PRK08233 hypothetical protein; Provisional

Probab=96.22  E-value=0.0039  Score=54.34  Aligned_cols=24  Identities=25%  Similarity=0.266  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..+|+|.|.+|+||||||..+...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            478999999999999999999873

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=96.21  E-value=0.012  Score=57.27  Aligned_cols=55  Identities=16%  Similarity=0.276  Sum_probs=34.2

Q ss_pred             HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhc
Q 016120          283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~  337 (394)
                      -.+...|-.++=+++||.--.  |...-..+...+..  ...|..+|++|.+...+..+
T Consensus       145 valArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~  203 (353)
T PRK10851        145 VALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEV  203 (353)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            344555556777899999876  44444444444432  13366788888888776665

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.21  E-value=0.032  Score=50.03  Aligned_cols=49  Identities=18%  Similarity=0.195  Sum_probs=31.0

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHH
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDL  333 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v  333 (394)
                      +...+..++-+++||+--.  +......+...+.. ...|..||++|.+...
T Consensus       138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~  189 (207)
T PRK13539        138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG  189 (207)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence            3444555678999999876  44444555554442 2346678888887654

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=96.20  E-value=0.05  Score=49.35  Aligned_cols=53  Identities=17%  Similarity=0.270  Sum_probs=33.1

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++=+++||+--.  +....+.+...+...  ..|..||++|.+.+.+...
T Consensus       156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~  212 (228)
T cd03257         156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKI  212 (228)
T ss_pred             HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            3344455677899999876  444445554444332  2266788898888766644

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.20  E-value=0.064  Score=52.80  Aligned_cols=24  Identities=21%  Similarity=0.201  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...++.++|+.|+||||.+..+..
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~  196 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAA  196 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357999999999999998888876

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=96.20  E-value=0.031  Score=49.85  Aligned_cols=22  Identities=18%  Similarity=0.018  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|.|||||.+.+..
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHH
Confidence            6899999999999999988864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK14974 cell division protein FtsY; Provisional

Probab=96.20  E-value=0.048  Score=52.65  Aligned_cols=24  Identities=21%  Similarity=0.162  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +..++.++|+.|+||||++..++.
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~  162 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAY  162 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            467999999999999998877775

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.19  E-value=0.052  Score=51.23  Aligned_cols=53  Identities=23%  Similarity=0.285  Sum_probs=33.0

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhh
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLAS  336 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~  336 (394)
                      .+...|..++=+|+||....  +......+...+..-  ..|..||++|.+.+....
T Consensus       151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~  207 (283)
T PRK13636        151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPL  207 (283)
T ss_pred             HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence            34444556778899999887  455545444444322  226678888888765543

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=96.19  E-value=0.081  Score=48.27  Aligned_cols=54  Identities=9%  Similarity=0.219  Sum_probs=33.9

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...|-.++-+++||+-..  +......+...+.....|..||++|.+......+
T Consensus       147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~  202 (236)
T cd03253         147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNA  202 (236)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhC
Confidence            34455566778999999887  4444454544443322266788888887666543

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=96.19  E-value=0.11  Score=47.45  Aligned_cols=54  Identities=9%  Similarity=0.105  Sum_probs=32.7

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+-.++=+++||+.-.  +....+.+...+....+|..||++|.+......+
T Consensus       148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~  203 (234)
T cd03251         148 AIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENA  203 (234)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhC
Confidence            33444455667899999876  4444455544443323356788888887655444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.012  Score=62.10  Aligned_cols=156  Identities=11%  Similarity=0.049  Sum_probs=88.2

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc---cccccc-CeeEEEEeCCCCCHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND---HVKFYF-DCLAWVRVSIAYDFGKMLDDIIK  262 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~  262 (394)
                      .++||++++.++++.|.....+.++  ++|.+|||||+++.-++..-   .+-... +..++.            .++..
T Consensus       171 PvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s------------LD~g~  236 (786)
T COG0542         171 PVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS------------LDLGS  236 (786)
T ss_pred             CCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE------------ecHHH
Confidence            5899999999999999876545554  58999999999876665410   111111 111111            01111


Q ss_pred             HhCCCCCCccccCcCHHHHHHHHHHHcc-CCeEEEEEeCCCC-----C-----chhHHHHHhhCCCCCCCcEEEEecCCh
Q 016120          263 SVMPPSRVSVIIGEDYQLKKSILRDYLT-NKKYFIVLDDVFD-----N-----SEIWSDLEELLPDDENGSRVLITVTDP  331 (394)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~-----~-----~~~~~~l~~~l~~~~~gs~IivTTR~~  331 (394)
                      -..+..     +..+.++....+.+.++ .++..|.+|.+..     .     .+.-+-|..+|..+. --.|--||-++
T Consensus       237 LvAGak-----yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT~~E  310 (786)
T COG0542         237 LVAGAK-----YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATTLDE  310 (786)
T ss_pred             Hhcccc-----ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEeccHHH
Confidence            122221     22255666655555553 4589999999976     1     112233444554443 23466677664


Q ss_pred             H---HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHH
Q 016120          332 D---LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFIL  369 (394)
Q Consensus       332 ~---v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~  369 (394)
                      .   +-...+....-..+.     ++.-  +.+++...++-
T Consensus       311 YRk~iEKD~AL~RRFQ~V~-----V~EP--s~e~ti~ILrG  344 (786)
T COG0542         311 YRKYIEKDAALERRFQKVL-----VDEP--SVEDTIAILRG  344 (786)
T ss_pred             HHHHhhhchHHHhcCceee-----CCCC--CHHHHHHHHHH
Confidence            2   111110012345566     8888  89999888864

>TIGR00235 udk uridine kinase

Probab=96.17  E-value=0.0042  Score=55.75  Aligned_cols=24  Identities=25%  Similarity=0.293  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+|+|+|++|+|||||++.+..
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999986

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=96.17  E-value=0.056  Score=50.31  Aligned_cols=53  Identities=19%  Similarity=0.235  Sum_probs=33.2

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+|+||+--.  |...-+.+...+...  ..|..||++|.+...+...
T Consensus       163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~  219 (262)
T PRK09984        163 IARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRY  219 (262)
T ss_pred             HHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            3444555677999999876  444445555544432  2366788888888754443

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=96.16  E-value=0.057  Score=49.40  Aligned_cols=23  Identities=22%  Similarity=0.215  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|+|||||.+.+..
T Consensus        25 Ge~~~i~G~nG~GKStLl~~l~G   47 (235)
T cd03299          25 GDYFVILGPTGSGKSVLLETIAG   47 (235)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            35889999999999999999975

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.15  E-value=0.072  Score=49.07  Aligned_cols=55  Identities=15%  Similarity=0.146  Sum_probs=32.2

Q ss_pred             HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      -.+...+-.++=+++||+.-.  +...-..+...+.....|..||++|.+.+.....
T Consensus       151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~  207 (246)
T PRK14269        151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRV  207 (246)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhh
Confidence            334455556777899999876  3333334443333222356788888887655443

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=96.14  E-value=0.0094  Score=58.07  Aligned_cols=54  Identities=13%  Similarity=0.201  Sum_probs=33.5

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...|-.++=+++||.--.  +....+.+...+..  ...|..+|++|.+..-+..+
T Consensus       146 aLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~l  203 (351)
T PRK11432        146 ALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAV  203 (351)
T ss_pred             HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence            35555666778899999776  44444444444332  13366788888888766554

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.14  E-value=0.037  Score=50.61  Aligned_cols=48  Identities=6%  Similarity=0.113  Sum_probs=30.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDI  260 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i  260 (394)
                      -.++.|.|.+|+||||+|.++... -.+.. ..+++++  ...+...++..+
T Consensus        24 g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~--~e~~~~~~~~~~   71 (230)
T PRK08533         24 GSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVS--TQLTTTEFIKQM   71 (230)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEe--CCCCHHHHHHHH
Confidence            458899999999999998655442 22222 3345665  333455666665

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=96.13  E-value=0.099  Score=47.46  Aligned_cols=54  Identities=13%  Similarity=0.183  Sum_probs=33.0

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+-.++=+++||+-..  +....+.+...+..-..|..||++|.+......+
T Consensus       149 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~  204 (229)
T cd03254         149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNA  204 (229)
T ss_pred             HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhC
Confidence            34444556778899999876  4444444444433222366788888887665433

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=96.13  E-value=0.063  Score=48.92  Aligned_cols=24  Identities=21%  Similarity=0.187  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -.+++|+|+.|+|||||++.++.-
T Consensus        12 Ge~~~i~G~nGsGKSTLl~~l~Gl   35 (230)
T TIGR02770        12 GEVLALVGESGSGKSLTCLAILGL   35 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            358899999999999999999863

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.12  E-value=0.013  Score=51.20  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .|.|.|.+|.||||+|+.+.+.
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999884

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=96.12  E-value=0.085  Score=47.14  Aligned_cols=53  Identities=13%  Similarity=0.167  Sum_probs=32.5

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++=+++||+-..  +....+.+...+....+|..||++|.+......+
T Consensus       136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~  190 (207)
T cd03369         136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDY  190 (207)
T ss_pred             HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhC
Confidence            3444455677889999876  4554455544444323466788888887665433

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13531 regulatory ATPase RavA; Provisional

Probab=96.11  E-value=0.01  Score=59.53  Aligned_cols=41  Identities=15%  Similarity=0.144  Sum_probs=36.2

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++||++.++.+...+..+.    -+.|.|++|+|||+||+.+..
T Consensus        21 ~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~   61 (498)
T PRK13531         21 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF   61 (498)
T ss_pred             hccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence            68999999999998887753    567899999999999999987

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.10  E-value=0.023  Score=51.57  Aligned_cols=21  Identities=14%  Similarity=0.126  Sum_probs=19.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +|+|.|.+|+||||+|+.+..
T Consensus         1 IigI~G~sGSGKTTla~~L~~   21 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQA   21 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHH
Confidence            589999999999999999986

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK00279 adk adenylate kinase; Reviewed

Probab=96.10  E-value=0.061  Score=48.50  Aligned_cols=21  Identities=14%  Similarity=0.072  Sum_probs=18.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .|.|+|++|+||||+|+.+..
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~   22 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAE   22 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            377899999999999999876

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.10  E-value=0.067  Score=52.32  Aligned_cols=23  Identities=30%  Similarity=0.313  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.++.++|+.|+||||++..+..
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999998887

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=96.10  E-value=0.077  Score=51.50  Aligned_cols=54  Identities=20%  Similarity=0.196  Sum_probs=32.4

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...|-.++=+|+||.--.  |+..-..+...+.. ...|..||+||.+.+.+..+
T Consensus       182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~  238 (340)
T PRK13536        182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL  238 (340)
T ss_pred             HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence            34444566788999999876  33332333322221 12367799999988766544

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=96.10  E-value=0.068  Score=52.31  Aligned_cols=55  Identities=16%  Similarity=0.223  Sum_probs=33.7

Q ss_pred             HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CC-CcEEEEecCChHHHhhc
Q 016120          283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--EN-GSRVLITVTDPDLLASL  337 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~-gs~IivTTR~~~v~~~~  337 (394)
                      -.+...|..++-+|+||+--.  +...-..+...+..-  .. |..+|++|.+.+-+..+
T Consensus       146 vaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l  205 (362)
T TIGR03258       146 IAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTL  205 (362)
T ss_pred             HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHh
Confidence            345555667788899999766  344334444433321  22 56788888888766554

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=96.10  E-value=0.056  Score=50.55  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|..|+|||||++.+..
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~G   55 (269)
T PRK11831         34 KITAIMGPSGIGKTTLLRLIGG   55 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5889999999999999999975

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.09  E-value=0.0062  Score=53.00  Aligned_cols=39  Identities=15%  Similarity=-0.018  Sum_probs=28.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccc-cccCeeEEEEeCC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVK-FYFDCLAWVRVSI  249 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~  249 (394)
                      ..++.+.|+.|+|||.||+.+..  .+. ......+-++.+.
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~   42 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSE   42 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGG
T ss_pred             EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhc
Confidence            56788999999999999999987  333 3344445555544

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.08  E-value=0.076  Score=49.15  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|+|||||.+.+..
T Consensus        33 Ge~~~i~G~nGsGKSTLl~~l~G   55 (254)
T PRK14273         33 NSITALIGPSGCGKSTFLRTLNR   55 (254)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999999975

>PTZ00035 Rad51 protein; Provisional

Probab=96.08  E-value=0.056  Score=52.30  Aligned_cols=96  Identities=5%  Similarity=-0.016  Sum_probs=56.4

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccc----cccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc-cc---cCc-C
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVK----FYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS-VI---IGE-D  277 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~-~~---~~~-~  277 (394)
                      +.-.++.|+|.+|+|||||+..++-..+..    ..=..++|++-...+++.+ +.++++..+...... .+   ... +
T Consensus       116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~~~~~~~  194 (337)
T PTZ00035        116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIAYARAYN  194 (337)
T ss_pred             CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceEEEccCC
Confidence            346788999999999999998886432211    1123467998877777776 445565554432100 00   111 3


Q ss_pred             HHHHHHHH---HHHc-cCCeEEEEEeCCCC
Q 016120          278 YQLKKSIL---RDYL-TNKKYFIVLDDVFD  303 (394)
Q Consensus       278 ~~~~~~~l---~~~l-~~kr~LlVlDdv~~  303 (394)
                      .+++...+   ...+ .++--|||+|-+..
T Consensus       195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSita  224 (337)
T PTZ00035        195 HEHQMQLLSQAAAKMAEERFALLIVDSATA  224 (337)
T ss_pred             HHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence            33333333   3333 34556999999865

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=96.07  E-value=0.045  Score=49.81  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|+|||||++.+..
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~l~G   48 (230)
T TIGR03410        26 GEVTCVLGRNGVGKTTLLKTLMG   48 (230)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999975

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=96.07  E-value=0.09  Score=55.53  Aligned_cols=53  Identities=19%  Similarity=0.297  Sum_probs=33.3

Q ss_pred             HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      -.+...|-.++=+|+||.--+  +...-..+...+..-. + .||++|.+.......
T Consensus       165 v~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-~-tvlivsHd~~~l~~~  219 (635)
T PRK11147        165 AALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-G-SIIFISHDRSFIRNM  219 (635)
T ss_pred             HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-C-EEEEEeCCHHHHHHh
Confidence            344445556677999999877  4444444555544332 4 588888888766655

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=96.05  E-value=0.021  Score=54.62  Aligned_cols=89  Identities=13%  Similarity=0.064  Sum_probs=55.1

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccc-CcCHHHHHHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVII-GEDYQLKKSILR  286 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~-~~~~~~~~~~l~  286 (394)
                      .-+++-|+|+.|+||||||..+..  +.+..-..++|+.....+++..     +..++.....---. +++.++..+...
T Consensus        52 ~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e  124 (322)
T PF00154_consen   52 RGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE  124 (322)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred             cCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence            456899999999999999998887  4544456789999888877644     45555432210000 114555666666


Q ss_pred             HHcc-CCeEEEEEeCCCC
Q 016120          287 DYLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       287 ~~l~-~kr~LlVlDdv~~  303 (394)
                      ..++ +.--++|+|-|-.
T Consensus       125 ~lirsg~~~lVVvDSv~a  142 (322)
T PF00154_consen  125 QLIRSGAVDLVVVDSVAA  142 (322)
T ss_dssp             HHHHTTSESEEEEE-CTT
T ss_pred             HHhhcccccEEEEecCcc
Confidence            6664 4456899999865

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=96.05  E-value=0.0097  Score=58.03  Aligned_cols=126  Identities=17%  Similarity=0.226  Sum_probs=65.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCccccc---ccCe------------eEEEEeCCCC------C----------------
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKF---YFDC------------LAWVRVSIAY------D----------------  252 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~~------------~~wv~vs~~~------~----------------  252 (394)
                      .+++|+|+.|+|||||.+.+..-.....   .|+.            +..+  .+++      +                
T Consensus        31 e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v--~Q~~~lfp~~tv~eNi~~~~~~~~~~~  108 (353)
T TIGR03265        31 EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV--FQSYALFPNLTVADNIAYGLKNRGMGR  108 (353)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE--eCCcccCCCCcHHHHHHHHHHhcCCCH
Confidence            4889999999999999999975321100   0110            1111  1111      1                


Q ss_pred             --HHHHHHHHHHHhCCCCCCccccCc-CH-HHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEE
Q 016120          253 --FGKMLDDIIKSVMPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRV  324 (394)
Q Consensus       253 --~~~i~~~i~~~l~~~~~~~~~~~~-~~-~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~I  324 (394)
                        ...-..++++.++........... +. +...-.+...|..++=+++||+--.  +...-..+...+..  ...|..+
T Consensus       109 ~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tv  188 (353)
T TIGR03265       109 AEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTT  188 (353)
T ss_pred             HHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence              112234455555543221112222 22 2223344555556677888998766  33333444433332  1236678


Q ss_pred             EEecCChHHHhhc
Q 016120          325 LITVTDPDLLASL  337 (394)
Q Consensus       325 ivTTR~~~v~~~~  337 (394)
                      |++|.+.+.+..+
T Consensus       189 i~vTHd~~ea~~l  201 (353)
T TIGR03265       189 IMVTHDQEEALSM  201 (353)
T ss_pred             EEEcCCHHHHHHh
Confidence            8888888766554

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=96.05  E-value=0.012  Score=57.70  Aligned_cols=54  Identities=13%  Similarity=0.247  Sum_probs=33.0

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...|-.++=+++||+--.  +...-..+...+...  ..|..||++|.+...+..+
T Consensus       154 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~l  211 (375)
T PRK09452        154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTM  211 (375)
T ss_pred             HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            34444555667899999876  444444444444321  2366788888887765554

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots

Probab=96.05  E-value=0.025  Score=47.73  Aligned_cols=107  Identities=13%  Similarity=0.174  Sum_probs=74.5

Q ss_pred             CccchhHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccc-cChHHHHHHHHHH
Q 016120           28 DSTNLTPLFQNLLTESEIIATTLLGNYEADMARHLFQFIREEFDDSKISLPFLELLDLEESDEEDV-ERADILEILEDIN  106 (394)
Q Consensus        28 ~s~~l~p~~~~l~s~~~~~~~~ll~~~~~~~~~~l~~~~~~~l~~L~~~L~~i~~~~l~~ae~~~~-~~~~~~~Wl~~l~  106 (394)
                      +++++|++++.|+...       +.      +.+-...++.-+++|..+++.|..+ +++.+..+. .+..-+.-++++.
T Consensus         7 ~gaalG~~~~eLlk~v-------~~------~~~k~~~fk~~l~~L~sTl~~i~P~-i~eI~~~~~eld~~~~ee~e~L~   72 (147)
T PF05659_consen    7 GGAALGAVFGELLKAV-------ID------ASKKSLSFKSILKRLESTLESIIPI-IKEIDKLNVELDRPRQEEIERLK   72 (147)
T ss_pred             HHHHHHHHHHHHHHHH-------HH------HHHHHHhhhhHHHHHHHHHHHhhhH-HHHHHHHhhhcCCchhHHHHHHH
Confidence            3667777777766652       11      1123466788899999999999999 988887643 2333378899999


Q ss_pred             HHhhhhHhHhhhhHHhhhhcCCcceeccccchhhHHHHHHHHHHHHHHHhhccC
Q 016120          107 DFVHESEEAIDTFFINIMQQQNSENESESSTDMALLVELHTKIIDIRNRMQQLP  160 (394)
Q Consensus       107 ~~a~d~eD~lD~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~i~~i~~~l~~l~  160 (394)
                      +...++++++++|..-            ...++...++.+++|+++.+.+....
T Consensus        73 ~~L~~g~~LV~k~sk~------------~r~n~~kk~~y~~Ki~~le~~l~~f~  114 (147)
T PF05659_consen   73 ELLEKGKELVEKCSKV------------RRWNLYKKPRYARKIEELEESLRRFI  114 (147)
T ss_pred             HHHHHHHHHHHHhccc------------cHHHHHhhHhHHHHHHHHHHHHHHHh
Confidence            9999999999999522            12344455666777777777776543

Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.04  E-value=0.074  Score=51.17  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|+|||||.+.+..
T Consensus        52 Ge~~~I~G~nGsGKSTLl~~L~G   74 (320)
T PRK13631         52 NKIYFIIGNSGSGKSTLVTHFNG   74 (320)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999975

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=96.04  E-value=0.059  Score=55.45  Aligned_cols=45  Identities=11%  Similarity=-0.012  Sum_probs=34.4

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|....+.++++.+..-...-.-|.|+|..|+||+++|+.+++
T Consensus       205 ~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~  249 (520)
T PRK10820        205 QIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL  249 (520)
T ss_pred             ceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence            789998888888777743211233466999999999999999876

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.04  E-value=0.088  Score=49.76  Aligned_cols=54  Identities=17%  Similarity=0.276  Sum_probs=32.5

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+..++-+|+||.-..  +...-..+...+..- ..|..||++|.+.+.+...
T Consensus       155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~  211 (287)
T PRK13641        155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEY  211 (287)
T ss_pred             HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            34445556678999999877  333333333333221 2477788888887755444

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=96.04  E-value=0.069  Score=54.70  Aligned_cols=23  Identities=17%  Similarity=0.179  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|+|||||.+.++.
T Consensus        30 Ge~~~l~G~NGsGKSTLl~~l~G   52 (501)
T PRK10762         30 GRVMALVGENGAGKSTMMKVLTG   52 (501)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999975

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.04  E-value=0.008  Score=58.40  Aligned_cols=115  Identities=13%  Similarity=0.092  Sum_probs=65.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY  288 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~  288 (394)
                      ...+.|.|+.|+||||+.+.+.+  .+..+...+++. +.++...  ........+. ..    +.+.+.......++..
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~--~~~~~~~~i~-q~----evg~~~~~~~~~l~~~  191 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEY--VHRNKRSLIN-QR----EVGLDTLSFANALRAA  191 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhh--hccCccceEE-cc----ccCCCCcCHHHHHHHh
Confidence            46899999999999999998877  344444455554 2221110  0000000000 00    0111223355667777


Q ss_pred             ccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          289 LTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       289 l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      |+..+=.|++|.+.+ .+.+......   ...|..|+.|+-..++....
T Consensus       192 lr~~pd~i~vgEird-~~~~~~~l~a---a~tGh~v~~T~Ha~~~~~~~  236 (343)
T TIGR01420       192 LREDPDVILIGEMRD-LETVELALTA---AETGHLVFGTLHTNSAAQTI  236 (343)
T ss_pred             hccCCCEEEEeCCCC-HHHHHHHHHH---HHcCCcEEEEEcCCCHHHHH
Confidence            888888999999998 7666543332   24466677777765555433

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=96.03  E-value=0.018  Score=58.89  Aligned_cols=133  Identities=17%  Similarity=0.150  Sum_probs=73.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcc-ccccc-----CeeEEEEeCC-C--------------C-C-HHHHHHHHHHHhC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDH-VKFYF-----DCLAWVRVSI-A--------------Y-D-FGKMLDDIIKSVM  265 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F-----~~~~wv~vs~-~--------------~-~-~~~i~~~i~~~l~  265 (394)
                      -..|+|+|+.|+|||||.+.+..... .....     -...++.-.. .              + + ...-.+..+.+++
T Consensus       348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~  427 (530)
T COG0488         348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG  427 (530)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence            34789999999999999999955211 11100     0111221111 0              0 0 1233344444444


Q ss_pred             CCCCCc-cccCc--CHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhc
Q 016120          266 PPSRVS-VIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEME  340 (394)
Q Consensus       266 ~~~~~~-~~~~~--~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~  340 (394)
                      -..... ..+..  .-+...-.|...+-.++=+||||.=-+  +.+..+.|..+|..- +|+ ||+.|.++.....+   
T Consensus       428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~Gt-vl~VSHDr~Fl~~v---  502 (530)
T COG0488         428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EGT-VLLVSHDRYFLDRV---  502 (530)
T ss_pred             CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CCe-EEEEeCCHHHHHhh---
Confidence            332211 12222  223334445555667888999999877  555666666666443 355 88889999888877   


Q ss_pred             CCCceee
Q 016120          341 NGEKIRR  347 (394)
Q Consensus       341 ~~~~~~~  347 (394)
                       +..++.
T Consensus       503 -a~~i~~  508 (530)
T COG0488         503 -ATRIWL  508 (530)
T ss_pred             -cceEEE
Confidence             355555

>PRK06547 hypothetical protein; Provisional

Probab=96.02  E-value=0.0095  Score=51.87  Aligned_cols=26  Identities=27%  Similarity=0.286  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ....+|+|.|++|+||||+|+.+...
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999999863

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=96.02  E-value=0.0042  Score=55.44  Aligned_cols=22  Identities=23%  Similarity=0.033  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHh
Q 016120          209 LAVVAILDSSGFDKTVFTADTY  230 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~  230 (394)
                      -+++.|.|+.|.|||||.+.+.
T Consensus        28 ~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          28 KRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             ceEEEEECCCCCChHHHHHHHH
Confidence            3689999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.02  E-value=0.088  Score=47.83  Aligned_cols=116  Identities=13%  Similarity=0.057  Sum_probs=63.8

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----------------
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV-----------------  270 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-----------------  270 (394)
                      .-..+.|.|.+|+||||||..+.... . ..-..++|++....  ...+... +.+++.....                 
T Consensus        19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~   93 (229)
T TIGR03881        19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEK   93 (229)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccc
Confidence            45688999999999999998876421 1 22346678876433  3333332 2222221100                 


Q ss_pred             --ccccCc-CHHHHHHHHHHHccC---CeEEEEEeCCCC----CchhHHH----HHhhCCCCCCCcEEEEecCC
Q 016120          271 --SVIIGE-DYQLKKSILRDYLTN---KKYFIVLDDVFD----NSEIWSD----LEELLPDDENGSRVLITVTD  330 (394)
Q Consensus       271 --~~~~~~-~~~~~~~~l~~~l~~---kr~LlVlDdv~~----~~~~~~~----l~~~l~~~~~gs~IivTTR~  330 (394)
                        ...... +.+++...+.+.++.   +.-++|+|.+..    .+..-..    +...+  ...|..+++|+..
T Consensus        94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l--~~~~~tvil~~~~  165 (229)
T TIGR03881        94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVL--NRWNFTILLTSQY  165 (229)
T ss_pred             ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHH--HhCCCEEEEEecc
Confidence              000112 566677777766543   345889999864    1211111    22222  2457788888874

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.01  E-value=0.093  Score=49.61  Aligned_cols=54  Identities=7%  Similarity=0.139  Sum_probs=33.7

Q ss_pred             HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhh
Q 016120          283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLAS  336 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~  336 (394)
                      -.+...|..++=+|+||+--.  +......+...+...  ..|..||++|.+.+.+..
T Consensus       153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~  210 (287)
T PRK13637        153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAK  210 (287)
T ss_pred             HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence            444555667788999999876  444445554444322  236668888888765543

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.01  E-value=0.11  Score=48.98  Aligned_cols=22  Identities=32%  Similarity=0.407  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|..|+|||||.+.+..
T Consensus        66 e~~~l~G~nGsGKSTLl~~L~G   87 (286)
T PRK14275         66 YVTAIIGPSGCGKSTFLRAINR   87 (286)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5889999999999999999985

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=96.01  E-value=0.061  Score=48.52  Aligned_cols=23  Identities=22%  Similarity=0.107  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|.|||||++.+..
T Consensus        30 G~~~~i~G~nGsGKSTLl~~i~G   52 (220)
T cd03245          30 GEKVAIIGRVGSGKSTLLKLLAG   52 (220)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999999975

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=96.01  E-value=0.065  Score=50.45  Aligned_cols=54  Identities=7%  Similarity=0.116  Sum_probs=34.2

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+-.++-+++||.--.  +......+...+..-  ..|..||++|.+.+.+..+
T Consensus       154 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~  211 (280)
T PRK13633        154 AIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEA  211 (280)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcC
Confidence            34444556778999999876  455555555555432  2466788888887665543

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=96.01  E-value=0.085  Score=53.87  Aligned_cols=22  Identities=14%  Similarity=0.332  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.++.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~G   46 (491)
T PRK10982         25 SIHALMGENGAGKSTLLKCLFG   46 (491)
T ss_pred             cEEEEECCCCCCHHHHHHHHcC
Confidence            5899999999999999999975

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=96.00  E-value=0.068  Score=49.84  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .+++|+|..|.|||||.+.+..-
T Consensus        38 e~~~i~G~nGsGKSTLl~~l~Gl   60 (265)
T TIGR02769        38 ETVGLLGRSGCGKSTLARLLLGL   60 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            48899999999999999999753

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=95.99  E-value=0.093  Score=49.01  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|+|||||++.++.
T Consensus        46 Ge~~~I~G~nGsGKSTLl~~l~G   68 (267)
T PRK14237         46 NKITALIGPSGSGKSTYLRSLNR   68 (267)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            35889999999999999999986

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=95.97  E-value=0.1  Score=51.77  Aligned_cols=53  Identities=15%  Similarity=0.272  Sum_probs=32.1

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...|..++=+|+||.--.  +...-..+...+...  ..|..||++|.+.+.+..+
T Consensus       175 LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~  231 (400)
T PRK10070        175 LARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRI  231 (400)
T ss_pred             HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHh
Confidence            3444555677899999876  444434444444321  2366788888887765544

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=95.97  E-value=0.12  Score=48.32  Aligned_cols=53  Identities=13%  Similarity=0.196  Sum_probs=31.8

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+|+||+--.  +......+...+.....+..||++|.+.+.....
T Consensus       174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~  228 (267)
T PRK14235        174 IARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARV  228 (267)
T ss_pred             HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhh
Confidence            3444555677899999876  4444444444443222245688888887665444

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=95.95  E-value=0.0053  Score=44.71  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ++.|.|..|+||||+++.+.+.
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999999873

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.94  E-value=0.074  Score=50.12  Aligned_cols=54  Identities=17%  Similarity=0.152  Sum_probs=34.9

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+..++=+|+||+-..  +......+...+..-  ..|..||++|.+.+....+
T Consensus       153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~  210 (282)
T PRK13640        153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMA  210 (282)
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC
Confidence            34444556778999999887  555555555555432  2366788888887665533

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=95.94  E-value=0.054  Score=50.59  Aligned_cols=53  Identities=15%  Similarity=0.256  Sum_probs=32.0

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+..++=+++||+--.  +...-..+...+..-  ..|..||++|.+.+....+
T Consensus       160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~  216 (267)
T PRK15112        160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHI  216 (267)
T ss_pred             HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHh
Confidence            4444556778899999877  444434444444332  2356688888877665544

>PHA02244 ATPase-like protein

Probab=95.93  E-value=0.027  Score=54.61  Aligned_cols=32  Identities=9%  Similarity=0.174  Sum_probs=23.6

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+..++..+   . -|.|+|+.|+|||+||+.+++
T Consensus       110 ~ri~r~l~~~---~-PVLL~GppGtGKTtLA~aLA~  141 (383)
T PHA02244        110 ADIAKIVNAN---I-PVFLKGGAGSGKNHIAEQIAE  141 (383)
T ss_pred             HHHHHHHhcC---C-CEEEECCCCCCHHHHHHHHHH
Confidence            3455555432   3 356799999999999999988

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=95.93  E-value=0.086  Score=47.57  Aligned_cols=23  Identities=30%  Similarity=0.211  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|.|||||.+.++.
T Consensus        31 G~~~~i~G~nGsGKSTLl~~i~G   53 (221)
T TIGR02211        31 GEIVAIVGSSGSGKSTLLHLLGG   53 (221)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999975

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=95.92  E-value=0.12  Score=53.61  Aligned_cols=51  Identities=27%  Similarity=0.358  Sum_probs=32.0

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++=+|+||.-.+  +...-..+...+.... + .||++|.+.+.+..+
T Consensus       174 la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-~-tviiisHd~~~~~~~  226 (556)
T PRK11819        174 LCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-G-TVVAVTHDRYFLDNV  226 (556)
T ss_pred             HHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-C-eEEEEeCCHHHHHhh
Confidence            3344455667899999877  4444444544444332 4 588888888766655

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=95.92  E-value=0.11  Score=47.02  Aligned_cols=23  Identities=30%  Similarity=0.228  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|.|||||++.++.
T Consensus        40 Ge~~~i~G~nGsGKSTLl~~l~G   62 (226)
T cd03248          40 GEVTALVGPSGSGKSTVVALLEN   62 (226)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35889999999999999999975

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR01069 mutS2 MutS2 family protein

Probab=95.92  E-value=0.0048  Score=66.05  Aligned_cols=123  Identities=16%  Similarity=0.136  Sum_probs=61.9

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD  287 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~  287 (394)
                      +..++.|+|+.|.||||+.+.+.... ..  ..+.++|++..... ...+.++...++......+... +...-...+..
T Consensus       321 ~~~~liItGpNg~GKSTlLK~i~~~~-l~--aq~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LS-tfS~~m~~~~~  395 (771)
T TIGR01069       321 EKRVLAITGPNTGGKTVTLKTLGLLA-LM--FQSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLS-TFSGHMKNISA  395 (771)
T ss_pred             CceEEEEECCCCCCchHHHHHHHHHH-HH--HHhCCCccCCcccc-ccchhheeeecChHhHHhhhhh-HHHHHHHHHHH
Confidence            34789999999999999998886520 00  11111222221100 0112222222221111000111 11111122333


Q ss_pred             Hcc--CCeEEEEEeCCCC--CchhHHHH----HhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          288 YLT--NKKYFIVLDDVFD--NSEIWSDL----EELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       288 ~l~--~kr~LlVlDdv~~--~~~~~~~l----~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      .+.  +.+-|++||..-.  ++.....+    ...+.  ..|+.+|+||....+....
T Consensus       396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~  451 (771)
T TIGR01069       396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALM  451 (771)
T ss_pred             HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHh
Confidence            332  4789999999987  44443333    22332  3578899999998876654

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK13409 putative ATPase RIL; Provisional

Probab=95.92  E-value=0.055  Score=56.47  Aligned_cols=23  Identities=26%  Similarity=0.185  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|+|||||.+.+..
T Consensus        99 Gev~gLvG~NGaGKSTLlkiL~G  121 (590)
T PRK13409         99 GKVTGILGPNGIGKTTAVKILSG  121 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35999999999999999999976

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.92  E-value=0.091  Score=49.30  Aligned_cols=54  Identities=17%  Similarity=0.235  Sum_probs=32.7

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+-.++=+++||+--.  +...-..+...+.. ...|..||++|.+.+....+
T Consensus       146 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~  202 (274)
T PRK13644        146 ALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDA  202 (274)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhC
Confidence            34445566778999999876  34333334333322 12467788888887766543

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.91  E-value=0.064  Score=48.31  Aligned_cols=23  Identities=26%  Similarity=0.248  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|.|||||.+.++.
T Consensus        13 Ge~~~l~G~NGsGKSTLlk~i~G   35 (213)
T PRK15177         13 HEHIGILAAPGSGKTTLTRLLCG   35 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999986

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=95.90  E-value=0.12  Score=52.28  Aligned_cols=46  Identities=17%  Similarity=0.136  Sum_probs=35.7

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .++|......++.+.+..-......+.|.|.+|+|||++|+.+++.
T Consensus       139 ~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~  184 (469)
T PRK10923        139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH  184 (469)
T ss_pred             cceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence            6888888877777766543333455779999999999999999874

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.90  E-value=0.065  Score=48.87  Aligned_cols=125  Identities=20%  Similarity=0.215  Sum_probs=67.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCc------------cc----------ccccCeeEEEEeCCCCC------------HHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNND------------HV----------KFYFDCLAWVRVSIAYD------------FGK  255 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~------------~~----------~~~F~~~~wv~vs~~~~------------~~~  255 (394)
                      -.++|+|++|+|||||-+.+.-=.            .+          -+++..--|-+|-+|-.            ...
T Consensus        30 EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~  109 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE  109 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHH
Confidence            488999999999999999996311            11          11222333654443221            234


Q ss_pred             HHHHHHHHhCCCCCCcc---ccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--C----chhHHHHHhhCCCCCCCcEEEE
Q 016120          256 MLDDIIKSVMPPSRVSV---IIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--N----SEIWSDLEELLPDDENGSRVLI  326 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~---~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~----~~~~~~l~~~l~~~~~gs~Iiv  326 (394)
                      ...++++..+.......   .++....+.. .+.+.|..++=+|.||.=..  |    ..-.+.+.....  ..+..|++
T Consensus       110 ~a~~~L~~VgL~~~~~~~P~qLSGGMrQRV-aiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~--~~~~Tvll  186 (248)
T COG1116         110 RAKELLELVGLAGFEDKYPHQLSGGMRQRV-AIARALATRPKLLLLDEPFGALDALTREELQDELLRLWE--ETRKTVLL  186 (248)
T ss_pred             HHHHHHHHcCCcchhhcCccccChHHHHHH-HHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHH--hhCCEEEE
Confidence            56667777766543221   1111333333 34445556666778887654  1    112233333322  23456777


Q ss_pred             ecCChHHHhhc
Q 016120          327 TVTDPDLLASL  337 (394)
Q Consensus       327 TTR~~~v~~~~  337 (394)
                      .|.+-+-|-.+
T Consensus       187 VTHdi~EAv~L  197 (248)
T COG1116         187 VTHDVDEAVYL  197 (248)
T ss_pred             EeCCHHHHHhh
Confidence            77776666665

>PTZ00088 adenylate kinase 1; Provisional

Probab=95.89  E-value=0.016  Score=52.94  Aligned_cols=21  Identities=14%  Similarity=0.290  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .|.|+|++|+||||+|+.+..
T Consensus         8 rIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          8 KIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999977

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=95.88  E-value=0.1  Score=51.77  Aligned_cols=55  Identities=20%  Similarity=0.242  Sum_probs=32.3

Q ss_pred             HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      -.+...|-.++-+|+||+--.  +...-..+...+..- ..|..||++|.+.+.+...
T Consensus       148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~  205 (402)
T PRK09536        148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARY  205 (402)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence            344455667788899999766  332222232222211 2356799999988777554

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=95.87  E-value=0.071  Score=48.92  Aligned_cols=157  Identities=16%  Similarity=0.128  Sum_probs=85.7

Q ss_pred             ccceecccHHH---HHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120          187 DINEFERGREE---LFDLLIEG----PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD  259 (394)
Q Consensus       187 ~~~Gr~~~~~~---i~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~  259 (394)
                      +++|.++.+.+   |++.|.+.    +-..+-|..+|++|.|||.+|+.+.|  +.+..|-   -|..      .     
T Consensus       122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalan--e~kvp~l---~vka------t-----  185 (368)
T COG1223         122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALAN--EAKVPLL---LVKA------T-----  185 (368)
T ss_pred             hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhc--ccCCceE---Eech------H-----
Confidence            88998765543   55666554    24567888999999999999999999  4444431   1110      1     


Q ss_pred             HHHHhCCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC---C----------chhHHHHHhhCCC--CCCCcE
Q 016120          260 IIKSVMPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD---N----------SEIWSDLEELLPD--DENGSR  323 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~---~----------~~~~~~l~~~l~~--~~~gs~  323 (394)
                        +-+|..-.       +-......+.+.. +.-+|.+.||.+..   +          .+..+.|..-+..  .+.|-.
T Consensus       186 --~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv  256 (368)
T COG1223         186 --ELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV  256 (368)
T ss_pred             --HHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence              11111111       2233333333333 34689999999864   0          1112223322221  234555


Q ss_pred             EEEecCChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120          324 VLITVTDPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP  375 (394)
Q Consensus       324 IivTTR~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~  375 (394)
                      -|-.|.+++.....-.+.-..-++     ...-  +++|-..++.+.+...|
T Consensus       257 tIaaTN~p~~LD~aiRsRFEeEIE-----F~LP--~~eEr~~ile~y~k~~P  301 (368)
T COG1223         257 TIAATNRPELLDPAIRSRFEEEIE-----FKLP--NDEERLEILEYYAKKFP  301 (368)
T ss_pred             EEeecCChhhcCHHHHhhhhheee-----eeCC--ChHHHHHHHHHHHHhCC
Confidence            555566555444331112234444     5545  77888888887765444

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=95.87  E-value=0.11  Score=53.73  Aligned_cols=127  Identities=12%  Similarity=0.165  Sum_probs=65.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCccc-cc--ccC---eeEEEEeCC------CCCHHH-------------HHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHV-KF--YFD---CLAWVRVSI------AYDFGK-------------MLDDIIKS  263 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~--~F~---~~~wv~vs~------~~~~~~-------------i~~~i~~~  263 (394)
                      -.+++|+|+.|+|||||.+.++.-..- ..  .|+   ...++.-..      ...+..             -...++..
T Consensus       345 Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~  424 (530)
T PRK15064        345 GERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGR  424 (530)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHH
Confidence            358899999999999999999863110 00  121   122221110      011111             12334444


Q ss_pred             hCCCC-CCccccCc-CH-HHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          264 VMPPS-RVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       264 l~~~~-~~~~~~~~-~~-~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      ++... ........ +. +...-.+...+-.++-+|+||.--+  |...-+.+...+..- .+ .||++|.+...+...
T Consensus       425 ~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~-tvi~vsHd~~~~~~~  501 (530)
T PRK15064        425 LLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-EG-TLIFVSHDREFVSSL  501 (530)
T ss_pred             cCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC-CC-EEEEEeCCHHHHHHh
Confidence            44321 10111222 22 2222334444556778999999877  444444444444332 24 588888888776655

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=95.87  E-value=0.0099  Score=50.45  Aligned_cols=44  Identities=18%  Similarity=0.246  Sum_probs=32.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 016120          211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPP  267 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~  267 (394)
                      +|+|-|++|+||||+|+.+.++.....       |      +...++++|+...+..
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl~~-------v------saG~iFR~~A~e~gms   45 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGLKL-------V------SAGTIFREMARERGMS   45 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCCce-------e------eccHHHHHHHHHcCCC
Confidence            689999999999999999988432221       1      2346778888777664

>PRK14527 adenylate kinase; Provisional

Probab=95.86  E-value=0.022  Score=50.37  Aligned_cols=23  Identities=22%  Similarity=0.146  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..++.|+|++|+||||+|+.+..
T Consensus         6 ~~~i~i~G~pGsGKsT~a~~La~   28 (191)
T PRK14527          6 NKVVIFLGPPGAGKGTQAERLAQ   28 (191)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999999976

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.022  Score=58.86  Aligned_cols=72  Identities=17%  Similarity=0.106  Sum_probs=45.8

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHH---
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSI---  284 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~---  284 (394)
                      ..+-|.|.|..|+|||+||+.+++... +.+.-.+..|+.+.--. .                      ..+..+..   
T Consensus       430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~-~----------------------~~e~iQk~l~~  485 (952)
T KOG0735|consen  430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDG-S----------------------SLEKIQKFLNN  485 (952)
T ss_pred             ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccc-h----------------------hHHHHHHHHHH
Confidence            456778999999999999999998433 44444455665543211 0                      22223333   


Q ss_pred             -HHHHccCCeEEEEEeCCCC
Q 016120          285 -LRDYLTNKKYFIVLDDVFD  303 (394)
Q Consensus       285 -l~~~l~~kr~LlVlDdv~~  303 (394)
                       ..+.+...+-++||||+.-
T Consensus       486 vfse~~~~~PSiIvLDdld~  505 (952)
T KOG0735|consen  486 VFSEALWYAPSIIVLDDLDC  505 (952)
T ss_pred             HHHHHHhhCCcEEEEcchhh
Confidence             3334456789999999964

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=95.83  E-value=0.093  Score=53.80  Aligned_cols=23  Identities=13%  Similarity=0.148  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~G   53 (506)
T PRK13549         31 GEIVSLCGENGAGKSTLMKVLSG   53 (506)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999976

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=95.83  E-value=0.019  Score=56.12  Aligned_cols=53  Identities=15%  Similarity=0.251  Sum_probs=33.7

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      +...|...+-+|++|+--.  ++.....+...+...  ..|..||++|.+.+.+..+
T Consensus       140 lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~  196 (363)
T TIGR01186       140 LARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRI  196 (363)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            4445566778899999877  555555555444322  2356688888888765544

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.83  E-value=0.064  Score=50.22  Aligned_cols=23  Identities=26%  Similarity=0.193  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|+|||||.+.++.
T Consensus        35 Ge~~~l~G~nGsGKSTLl~~l~G   57 (271)
T PRK13632         35 GEYVAILGHNGSGKSTISKILTG   57 (271)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35889999999999999999975

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.83  E-value=0.094  Score=48.48  Aligned_cols=23  Identities=22%  Similarity=0.215  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|+|||||++.+..
T Consensus        32 Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14261         32 NRVTALIGPSGCGKSTLLRCFNR   54 (253)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            34889999999999999999973

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.83  E-value=0.093  Score=49.08  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|+|||||++.+..
T Consensus        39 Ge~~~l~G~nGsGKSTLl~~l~G   61 (269)
T PRK14259         39 GKVTALIGPSGCGKSTVLRSLNR   61 (269)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35889999999999999999975

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=95.83  E-value=0.047  Score=57.70  Aligned_cols=46  Identities=11%  Similarity=0.107  Sum_probs=36.0

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .++|....+.++.+.+..--....-|.|+|..|+||+++|+.+++.
T Consensus       326 ~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~  371 (638)
T PRK11388        326 HMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE  371 (638)
T ss_pred             ceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence            7889888888887777543223334679999999999999999873

>PRK03839 putative kinase; Provisional

Probab=95.82  E-value=0.0063  Score=53.22  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .|.|+|++|+||||+++.+++.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999883

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.82  E-value=0.077  Score=49.28  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|..|.|||||.+.+..
T Consensus        39 e~~~i~G~nGsGKSTLl~~i~G   60 (258)
T PRK14268         39 SVTALIGPSGCGKSTFIRCLNR   60 (258)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999975

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=95.82  E-value=0.11  Score=53.38  Aligned_cols=53  Identities=15%  Similarity=0.325  Sum_probs=32.3

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...|..++=+|+||.-..  +...-..+...+..  ...|..||++|.+...+...
T Consensus       179 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~  235 (520)
T TIGR03269       179 LARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDL  235 (520)
T ss_pred             HHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence            3444555677999999876  44444444333322  12366688889888776654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=95.82  E-value=0.043  Score=54.73  Aligned_cols=91  Identities=14%  Similarity=0.207  Sum_probs=49.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCC-C-ccccCc-----CHHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSR-V-SVIIGE-----DYQLKK  282 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~-~-~~~~~~-----~~~~~~  282 (394)
                      ..++|+|..|+|||||++.+....   .....++|..-...-++..+....+.......- . .+.-+.     -.....
T Consensus       166 qri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a  242 (450)
T PRK06002        166 QRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA  242 (450)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence            478999999999999999887632   122344554433334444444444333211000 0 000000     112223


Q ss_pred             HHHHHHc--cCCeEEEEEeCCCC
Q 016120          283 SILRDYL--TNKKYFIVLDDVFD  303 (394)
Q Consensus       283 ~~l~~~l--~~kr~LlVlDdv~~  303 (394)
                      -.+.+++  +++..|+++||+-.
T Consensus       243 ~~iAEyfrd~G~~Vll~~DslTr  265 (450)
T PRK06002        243 TAIAEYFRDRGENVLLIVDSVTR  265 (450)
T ss_pred             HHHHHHHHHcCCCEEEeccchHH
Confidence            3344554  57999999999854

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=95.82  E-value=0.012  Score=57.12  Aligned_cols=151  Identities=14%  Similarity=0.164  Sum_probs=80.3

Q ss_pred             ccceecccHHHHHHHHhcCC---------------CCceEEEEEcCCCccHHHHHHHHhcCcccc--cccC---eeEEEE
Q 016120          187 DINEFERGREELFDLLIEGP---------------SGLAVVAILDSSGFDKTVFTADTYNNDHVK--FYFD---CLAWVR  246 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~---------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~---~~~wv~  246 (394)
                      +..|...+...|.+......               ..-.+++|+|.+|.||||+.+.+.......  +.|.   ..+=+.
T Consensus       372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp  451 (593)
T COG2401         372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVP  451 (593)
T ss_pred             ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecc
Confidence            55666667777766654321               233488999999999999999887532111  1111   111110


Q ss_pred             -------e----CCCCCHHHHHHHHH-------------HHhCCCCCCc--cccCc--CHHHHHHHHHHHccCCeEEEEE
Q 016120          247 -------V----SIAYDFGKMLDDII-------------KSVMPPSRVS--VIIGE--DYQLKKSILRDYLTNKKYFIVL  298 (394)
Q Consensus       247 -------v----s~~~~~~~i~~~i~-------------~~l~~~~~~~--~~~~~--~~~~~~~~l~~~l~~kr~LlVl  298 (394)
                             +    ...++-..++..+.             +..+.....-  ..+..  +-+.-..+|...+..+.-+++.
T Consensus       452 ~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~i  531 (593)
T COG2401         452 KNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLI  531 (593)
T ss_pred             ccchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence                   0    11222223333333             3333222110  11222  3333456677788888888888


Q ss_pred             eCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          299 DDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       299 Ddv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      |....  +...--.+...+...  ..|+.+++.|+++++.+.+
T Consensus       532 DEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL  574 (593)
T COG2401         532 DEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNAL  574 (593)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhcc
Confidence            88755  222212222222221  3578888888889998888

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=95.81  E-value=0.0042  Score=54.77  Aligned_cols=120  Identities=13%  Similarity=0.070  Sum_probs=58.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHcc
Q 016120          211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLT  290 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~  290 (394)
                      ++.|.|+.|.||||+.+.+.-.. +..+-.+.+|.  .. . ......+++..++......+..+ +...-...+...+.
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~-~la~~G~~v~a--~~-~-~~~~~d~il~~~~~~d~~~~~~s-~fs~~~~~l~~~l~   74 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIV-IMAQIGSFVPA--ES-A-ELPVFDRIFTRIGASDSLAQGLS-TFMVEMKETANILK   74 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHH-HHHHhCCCeee--hh-e-EecccceEEEEeCCCCchhcccc-HHHHHHHHHHHHHH
Confidence            46799999999999999887321 11111111111  10 0 00011111111211111000111 22222334455554


Q ss_pred             C--CeEEEEEeCCCC--CchhHHH----HHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          291 N--KKYFIVLDDVFD--NSEIWSD----LEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       291 ~--kr~LlVlDdv~~--~~~~~~~----l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      .  ++-|+++|..-.  +...-..    +...+.. ..|+.+|++|.+.++...+
T Consensus        75 ~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~  128 (185)
T smart00534       75 NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA  128 (185)
T ss_pred             hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence            3  789999999976  3322222    2222322 2367899999998877766

>PRK14738 gmk guanylate kinase; Provisional

Probab=95.80  E-value=0.0081  Score=53.90  Aligned_cols=31  Identities=26%  Similarity=0.298  Sum_probs=25.3

Q ss_pred             HHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          201 LLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       201 ~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      |+.++......+.|+|++|+|||||++.+..
T Consensus         5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~   35 (206)
T PRK14738          5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE   35 (206)
T ss_pred             cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence            4445545678889999999999999999975

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=95.80  E-value=0.092  Score=48.62  Aligned_cols=53  Identities=17%  Similarity=0.225  Sum_probs=31.9

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+..++=+++||+--.  +...-+.+...+... ..|..||++|.+.......
T Consensus       149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~  204 (255)
T PRK11231        149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRY  204 (255)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHh
Confidence            3444555678899999876  444444444444321 2356688888887654443

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=95.80  E-value=0.046  Score=53.59  Aligned_cols=100  Identities=13%  Similarity=0.070  Sum_probs=54.9

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccC
Q 016120          196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIG  275 (394)
Q Consensus       196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~  275 (394)
                      .++-+.|..+=..-.++.|.|.+|+|||||+..++..  ....-..++|++....  ...+ ..-+..++.......-..
T Consensus        69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~  143 (372)
T cd01121          69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLA  143 (372)
T ss_pred             HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEc
Confidence            3333444332223468899999999999999988763  3222345677765433  3332 222445554322110112


Q ss_pred             c-CHHHHHHHHHHHccCCeEEEEEeCCCC
Q 016120          276 E-DYQLKKSILRDYLTNKKYFIVLDDVFD  303 (394)
Q Consensus       276 ~-~~~~~~~~l~~~l~~kr~LlVlDdv~~  303 (394)
                      . +.+.+.+.+.   ..+.-++|+|.+..
T Consensus       144 e~~le~I~~~i~---~~~~~lVVIDSIq~  169 (372)
T cd01121         144 ETNLEDILASIE---ELKPDLVIIDSIQT  169 (372)
T ss_pred             cCcHHHHHHHHH---hcCCcEEEEcchHH
Confidence            2 4444444432   24667899999864

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=95.80  E-value=0.1  Score=48.29  Aligned_cols=54  Identities=19%  Similarity=0.287  Sum_probs=32.3

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+-.++-+++||+--.  +...-..+...+..  ...|..||++|.+.......
T Consensus       158 ~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~  215 (253)
T TIGR02323       158 QIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLL  215 (253)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence            34444556777889999876  33333334333322  12366788888887766544

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.79  E-value=0.12  Score=47.82  Aligned_cols=53  Identities=15%  Similarity=0.179  Sum_probs=31.8

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+++||+--.  +......+...+.....|..||++|.+......+
T Consensus       158 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~  212 (251)
T PRK14249        158 IARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARA  212 (251)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh
Confidence            3344455678899999876  4444444443333222356788888887665544

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=95.79  E-value=0.15  Score=44.73  Aligned_cols=58  Identities=14%  Similarity=0.276  Sum_probs=38.5

Q ss_pred             HHHHHHHHHccCCeEEEEEeCCCC--C-chhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          280 LKKSILRDYLTNKKYFIVLDDVFD--N-SEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       280 ~~~~~l~~~l~~kr~LlVlDdv~~--~-~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +..-.+...+-+++-+|+=|.=-.  + ...|+-+.-.-.-+..|+.|+++|.+.++...+
T Consensus       143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~  203 (223)
T COG2884         143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM  203 (223)
T ss_pred             HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence            333445555667788888886433  2 445655443333456799999999999988888

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=95.79  E-value=0.0077  Score=52.79  Aligned_cols=24  Identities=13%  Similarity=0.144  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+++.|+|++|+||||+|+.+..
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999986

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.78  E-value=0.09  Score=49.33  Aligned_cols=60  Identities=8%  Similarity=0.106  Sum_probs=36.9

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcCCCceee
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRR  347 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~  347 (394)
                      .+...+-.++=+|+||+--.  +....+.+...+..-..+..||++|.+.......    .++++.
T Consensus       171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~----~d~i~~  232 (274)
T PRK14265        171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRV----ADWTAF  232 (274)
T ss_pred             HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh----CCEEEE
Confidence            34444556778899999876  4444444444443222346789999988766655    355655

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.78  E-value=0.096  Score=52.35  Aligned_cols=23  Identities=30%  Similarity=0.291  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++.++|++|+||||++..+..
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~  243 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAA  243 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999998877765

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=95.78  E-value=0.13  Score=48.88  Aligned_cols=128  Identities=12%  Similarity=0.144  Sum_probs=66.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccc-c---cc------------CeeEEEEeCC----CCCHH---------------
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVK-F---YF------------DCLAWVRVSI----AYDFG---------------  254 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~---~F------------~~~~wv~vs~----~~~~~---------------  254 (394)
                      .++++.|+.|.|||||.+.+..-.+-. .   -+            ..+.++.-..    ..++.               
T Consensus        32 ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~  111 (293)
T COG1131          32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKE  111 (293)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChh
Confidence            589999999999999999997631100 0   00            0122221111    11222               


Q ss_pred             ---HHHHHHHHHhCCCCCCccccCc-CHHH-HHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCC-cEEE
Q 016120          255 ---KMLDDIIKSVMPPSRVSVIIGE-DYQL-KKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENG-SRVL  325 (394)
Q Consensus       255 ---~i~~~i~~~l~~~~~~~~~~~~-~~~~-~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~g-s~Ii  325 (394)
                         .-..++++.++........+.. +... ..-.+...|-+++=+++||.--+  |+..-..+...+..- ..| ..|+
T Consensus       112 ~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvl  191 (293)
T COG1131         112 EAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTIL  191 (293)
T ss_pred             HHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEE
Confidence               2344555555555311111222 2211 12233444566778999999776  333323333322221 223 5799


Q ss_pred             EecCChHHHhhc
Q 016120          326 ITVTDPDLLASL  337 (394)
Q Consensus       326 vTTR~~~v~~~~  337 (394)
                      +||....-+..+
T Consensus       192 issH~l~e~~~~  203 (293)
T COG1131         192 LSTHILEEAEEL  203 (293)
T ss_pred             EeCCcHHHHHHh
Confidence            999988766665

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=95.77  E-value=0.11  Score=53.31  Aligned_cols=23  Identities=13%  Similarity=0.261  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|..|+|||||++.++.
T Consensus       289 Ge~~~l~G~NGsGKSTLl~~i~G  311 (510)
T PRK15439        289 GEILGLAGVVGAGRTELAETLYG  311 (510)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcC
Confidence            45899999999999999999975

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.77  E-value=0.14  Score=47.81  Aligned_cols=169  Identities=21%  Similarity=0.265  Sum_probs=98.9

Q ss_pred             ccceecccHHHHHHHHhcC----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120          187 DINEFERGREELFDLLIEG----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  256 (394)
                      ++-|.+..++.|.+...-.          ....+-|.++|++|.||+.||+.|...  -...     |.+||..      
T Consensus       134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnST-----FFSvSSS------  200 (439)
T KOG0739|consen  134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANST-----FFSVSSS------  200 (439)
T ss_pred             hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCCc-----eEEeehH------
Confidence            7888888888888776432          134778889999999999999999873  2232     3444443      


Q ss_pred             HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHcc-CCeEEEEEeCCCC-------C-chhHHHHHhhC-------CCCCC
Q 016120          257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLT-NKKYFIVLDDVFD-------N-SEIWSDLEELL-------PDDEN  320 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~-------~-~~~~~~l~~~l-------~~~~~  320 (394)
                        ++++...+          ..+.+...|.+..+ +|+-+|.+|.|..       + .+.-..+..-|       .++..
T Consensus       201 --DLvSKWmG----------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~  268 (439)
T KOG0739|consen  201 --DLVSKWMG----------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDND  268 (439)
T ss_pred             --HHHHHHhc----------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCC
Confidence              22222222          34556667766664 6889999999875       1 11222232211       12334


Q ss_pred             CcEEEEecCChHHHhhchh-cCCCceeeCCccCCCCCCCChHHHHH-HHHHHhCCCCCCCCcCCCchhhhhhc
Q 016120          321 GSRVLITVTDPDLLASLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQ-FFILHYGSMPLENYLQGEAIPTVGDN  391 (394)
Q Consensus       321 gs~IivTTR~~~v~~~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~-Lf~~~~~~~~~~~~~~~~~~~~vg~~  391 (394)
                      |.-|+=.|..+-+....-. .-..++|-       ||  ++..|.. +|.-+.|+.+  ....-..++++|+.
T Consensus       269 gvLVLgATNiPw~LDsAIRRRFekRIYI-------PL--Pe~~AR~~MF~lhlG~tp--~~LT~~d~~eL~~k  330 (439)
T KOG0739|consen  269 GVLVLGATNIPWVLDSAIRRRFEKRIYI-------PL--PEAHARARMFKLHLGDTP--HVLTEQDFKELARK  330 (439)
T ss_pred             ceEEEecCCCchhHHHHHHHHhhcceec-------cC--CcHHHhhhhheeccCCCc--cccchhhHHHHHhh
Confidence            4444546766644433311 11345555       77  7777775 4444577654  23334566666654

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=95.77  E-value=0.21  Score=50.30  Aligned_cols=220  Identities=12%  Similarity=0.088  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHHHHhhhhHhHhhhhHHhhhhcCCcceeccccchhhHHHHHHHHHHHHHHHhhccCCCCCCCCCCC---C
Q 016120           95 RADILEILEDINDFVHESEEAIDTFFINIMQQQNSENESESSTDMALLVELHTKIIDIRNRMQQLPPGDNGFDISD---K  171 (394)
Q Consensus        95 ~~~~~~Wl~~l~~~a~d~eD~lD~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~i~~i~~~l~~l~~~~~~~~~~~---~  171 (394)
                      ..+++.|.++=++ ....+|++-.+......                   .+++.....+.++......-.-...+   -
T Consensus       316 ~~q~K~~~kqqk~-i~~~K~~ia~~g~g~a~-------------------~~rka~s~~K~~~km~~~gL~ek~~~~k~l  375 (614)
T KOG0927|consen  316 ENQMKAYEKQQKQ-IAHMKDLIARFGHGSAK-------------------LGRKAQSKEKTLDKMEADGLTEKVVGEKVL  375 (614)
T ss_pred             HHHHHHHHHHHhH-HHHhhHHHHhhcccchh-------------------hhHHHhhhhhhHHHHhhccccccccCCceE


Q ss_pred             CccccccCCCCCCCc----ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHH------------------
Q 016120          172 CNEIIHLLSEGQPRL----DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADT------------------  229 (394)
Q Consensus       172 ~~~~~~~~~~~~~~~----~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v------------------  229 (394)
                      ...-+.....++|..    .-+|.+..- .|...|..+-..-..+++||+.|+|||||.+.+                  
T Consensus       376 ~~~f~~vg~~p~pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~  454 (614)
T KOG0927|consen  376 SFRFPEVGKIPPPVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK  454 (614)
T ss_pred             EEEcccccCCCCCeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc


Q ss_pred             --hcCcccccccCeeEEE-----EeCCCCCHHHHHHHHHHHhCCC-CCCccccCc-CHHHHHHHHHHHcc-CCeEEEEEe
Q 016120          230 --YNNDHVKFYFDCLAWV-----RVSIAYDFGKMLDDIIKSVMPP-SRVSVIIGE-DYQLKKSILRDYLT-NKKYFIVLD  299 (394)
Q Consensus       230 --~~~~~~~~~F~~~~wv-----~vs~~~~~~~i~~~i~~~l~~~-~~~~~~~~~-~~~~~~~~l~~~l~-~kr~LlVlD  299 (394)
                        +.++.....-+...|.     ..-.+-...+..+.|+...+.. ..+...+.. +..+....+-.++. ..+-|||||
T Consensus       455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD  534 (614)
T KOG0927|consen  455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLD  534 (614)
T ss_pred             chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEec


Q ss_pred             CCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          300 DVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       300 dv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      .-.+  +....+.+..++..-..|  ||++|.+--+...+
T Consensus       535 EPtnhLDi~tid~laeaiNe~~Gg--vv~vSHDfrlI~qV  572 (614)
T KOG0927|consen  535 EPTNHLDIETIDALAEAINEFPGG--VVLVSHDFRLISQV  572 (614)
T ss_pred             CCCcCCCchhHHHHHHHHhccCCc--eeeeechhhHHHHH

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=95.76  E-value=0.034  Score=48.24  Aligned_cols=122  Identities=9%  Similarity=-0.010  Sum_probs=64.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCee--EEEEeCCCCCHHHHHHHHH---HHhCCCCC-Ccccc--Cc-CHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCL--AWVRVSIAYDFGKMLDDII---KSVMPPSR-VSVII--GE-DYQ  279 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~--~wv~vs~~~~~~~i~~~i~---~~l~~~~~-~~~~~--~~-~~~  279 (394)
                      ...|-|++..|.||||.|..+... .....+.+.  -|+.-........++....   ...+.... ...+.  +. ...
T Consensus         5 ~Gli~v~~g~GkGKtt~a~g~a~r-a~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~   83 (173)
T TIGR00708         5 RGIIIVHTGNGKGKTTAAFGMALR-ALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK   83 (173)
T ss_pred             ccEEEEECCCCCChHHHHHHHHHH-HHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence            357778888999999999777652 122223332  2443332333333333320   00000000 00000  00 223


Q ss_pred             HHHHHHHHHccCCe-EEEEEeCCCC----CchhHHHHHhhCCCCCCCcEEEEecCCh
Q 016120          280 LKKSILRDYLTNKK-YFIVLDDVFD----NSEIWSDLEELLPDDENGSRVLITVTDP  331 (394)
Q Consensus       280 ~~~~~l~~~l~~kr-~LlVlDdv~~----~~~~~~~l~~~l~~~~~gs~IivTTR~~  331 (394)
                      ...+..++.+...+ =|+|||.+-.    ..-..+.+...+....++..||+|-|+.
T Consensus        84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~  140 (173)
T TIGR00708        84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC  140 (173)
T ss_pred             HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence            34445555555444 5999999864    1333466777776667778999999985

Alternate name: corrinoid adenosyltransferase.

>PRK04132 replication factor C small subunit; Provisional

Probab=95.76  E-value=0.13  Score=55.32  Aligned_cols=126  Identities=10%  Similarity=0.029  Sum_probs=76.9

Q ss_pred             CCCccHHHHHHHHhcCcccccccC-eeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEE
Q 016120          217 SSGFDKTVFTADTYNNDHVKFYFD-CLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYF  295 (394)
Q Consensus       217 ~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~L  295 (394)
                      |.++||||+|..++++. ..+.++ ..+-+++|....... .++++.......+                  .-..+.-+
T Consensus       574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~------------------~~~~~~KV  633 (846)
T PRK04132        574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINV-IREKVKEFARTKP------------------IGGASFKI  633 (846)
T ss_pred             CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC------------------cCCCCCEE
Confidence            67889999999999841 122222 345667776544433 2333322211110                  00124579


Q ss_pred             EEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          296 IVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       296 lVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      +|||++.. +....+.|...+-.-...+++|++|.+. .+...+  .+....++     +.++  +.++-...+.+.+
T Consensus       634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tI--rSRC~~i~-----F~~l--s~~~i~~~L~~I~  702 (846)
T PRK04132        634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI--QSRCAIFR-----FRPL--RDEDIAKRLRYIA  702 (846)
T ss_pred             EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHH--hhhceEEe-----CCCC--CHHHHHHHHHHHH
Confidence            99999999 6667788877776544566666655544 454444  34567888     9999  9888877776653

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=95.75  E-value=0.11  Score=53.33  Aligned_cols=23  Identities=17%  Similarity=0.169  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        31 Ge~~~liG~nGsGKSTLl~~i~G   53 (510)
T PRK09700         31 GEIHALLGENGAGKSTLMKVLSG   53 (510)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcC
Confidence            35899999999999999999975

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=95.74  E-value=0.024  Score=55.76  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.++.
T Consensus        46 e~~~llGpsGsGKSTLLr~IaG   67 (377)
T PRK11607         46 EIFALLGASGCGKSTLLRMLAG   67 (377)
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            5889999999999999999975

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.74  E-value=0.041  Score=55.20  Aligned_cols=46  Identities=17%  Similarity=0.271  Sum_probs=36.2

Q ss_pred             ccceec---ccHHHHHHHHhcCC-------CCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          187 DINEFE---RGREELFDLLIEGP-------SGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       187 ~~~Gr~---~~~~~i~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ++-|.|   .++++|++.|.+..       .=++=|.++|++|.|||-||+.+.-.
T Consensus       305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE  360 (752)
T KOG0734|consen  305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE  360 (752)
T ss_pred             cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence            677866   47788888887652       22456779999999999999999883

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=95.73  E-value=0.11  Score=43.93  Aligned_cols=21  Identities=19%  Similarity=0.173  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ++.|+|.+|+||||+|+.+..
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~   21 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEE   21 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999887

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=95.72  E-value=0.52  Score=43.24  Aligned_cols=149  Identities=19%  Similarity=0.204  Sum_probs=84.9

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeC-CCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVS-IAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR  286 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~  286 (394)
                      +.+++.++|.-|.|||.+++.+..-  .- .=+... |.+. +......+...|+..+..+...  ......+.....|.
T Consensus        50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~-~d~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~~--~~~~~~e~~~~~L~  123 (269)
T COG3267          50 GQGILAVTGEVGSGKTVLRRALLAS--LN-EDQVAV-VVIDKPTLSDATLLEAIVADLESQPKV--NVNAVLEQIDRELA  123 (269)
T ss_pred             CCceEEEEecCCCchhHHHHHHHHh--cC-CCceEE-EEecCcchhHHHHHHHHHHHhccCccc--hhHHHHHHHHHHHH
Confidence            4678999999999999999944331  11 111122 3333 3556778888888888773320  11113344445555


Q ss_pred             HHc-cCCe-EEEEEeCCCC-CchhHHHHHhhCCCCCCCc----EEEE--ec-----CChHHHhhchhcCCCce-eeCCcc
Q 016120          287 DYL-TNKK-YFIVLDDVFD-NSEIWSDLEELLPDDENGS----RVLI--TV-----TDPDLLASLEMENGEKI-RRDSVL  351 (394)
Q Consensus       287 ~~l-~~kr-~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs----~Iiv--TT-----R~~~v~~~~~~~~~~~~-~~~~~~  351 (394)
                      +.. +++| ..++.|+..+ +.+..+.++....-...+|    ++++  ++     |-+.....-   ....+ |.    
T Consensus       124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~---~R~~ir~~----  196 (269)
T COG3267         124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELE---QRIDIRIE----  196 (269)
T ss_pred             HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhh---heEEEEEe----
Confidence            554 4677 8999999988 5556665554332222222    2333  11     111111111   22334 77    


Q ss_pred             CCCCCCCChHHHHHHHHHHhC
Q 016120          352 FGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       352 ~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                       +.|+  +.++.-.+++.+++
T Consensus       197 -l~P~--~~~~t~~yl~~~Le  214 (269)
T COG3267         197 -LPPL--TEAETGLYLRHRLE  214 (269)
T ss_pred             -cCCc--ChHHHHHHHHHHHh
Confidence             9999  99888877777754

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=95.72  E-value=0.044  Score=47.07  Aligned_cols=51  Identities=18%  Similarity=0.311  Sum_probs=33.1

Q ss_pred             CeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhchhcCCCceee
Q 016120          292 KKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASLEMENGEKIRR  347 (394)
Q Consensus       292 kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~~~~~~~~~~~  347 (394)
                      ++-++++|+...  +...-..+...+... ..|+.+|+||.+.......     +.++.
T Consensus        99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~-----d~~~~  152 (162)
T cd03227          99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELA-----DKLIH  152 (162)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhh-----hhEEE
Confidence            678999999987  444333333333221 1267899999999887655     45555

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=95.71  E-value=0.1  Score=50.37  Aligned_cols=54  Identities=15%  Similarity=0.191  Sum_probs=34.1

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...|..++=+||+|.--.  +......+...+..-  ..|..||++|.+..++..+
T Consensus       164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~  221 (327)
T PRK11308        164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHI  221 (327)
T ss_pred             HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            34444555677999999877  444444444444322  2366789999988777654

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.70  E-value=0.092  Score=48.06  Aligned_cols=23  Identities=13%  Similarity=0.081  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -..++|+|..|+|||||++.+.-
T Consensus        30 Ge~~~i~G~nGsGKSTL~~~l~G   52 (235)
T COG1122          30 GERVLLIGPNGSGKSTLLKLLNG   52 (235)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcC
Confidence            34788999999999999999853

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.70  E-value=0.14  Score=48.25  Aligned_cols=54  Identities=20%  Similarity=0.204  Sum_probs=34.0

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+-.++=+|+||+--.  +......+...+..-  ..|..||++|.+......+
T Consensus       150 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~  207 (279)
T PRK13635        150 AIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQA  207 (279)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcC
Confidence            33444556678999999877  455555555555422  2367788888887655543

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=95.70  E-value=0.023  Score=53.09  Aligned_cols=128  Identities=17%  Similarity=0.162  Sum_probs=66.0

Q ss_pred             ceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 016120          189 NEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPS  268 (394)
Q Consensus       189 ~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~  268 (394)
                      .|......+.+..+...  ...++.|.|..|+||||++..+.+  .+...-..++.+.-+..+....+     .++.   
T Consensus        62 lg~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~--~i~~~~~~iitiEdp~E~~~~~~-----~q~~---  129 (264)
T cd01129          62 LGLKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALS--ELNTPEKNIITVEDPVEYQIPGI-----NQVQ---  129 (264)
T ss_pred             cCCCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEEEECCCceecCCCc-----eEEE---
Confidence            34444333444444332  246889999999999999988865  22221112223321111111100     0110   


Q ss_pred             CCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          269 RVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       269 ~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                           +.. ........++..|+..+=.++++++.+ .+.........   ..|..++-|....++....
T Consensus       130 -----v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~-~e~a~~~~~aa---~tGh~v~tTlHa~~~~~ai  190 (264)
T cd01129         130 -----VNEKAGLTFARGLRAILRQDPDIIMVGEIRD-AETAEIAVQAA---LTGHLVLSTLHTNDAPGAI  190 (264)
T ss_pred             -----eCCcCCcCHHHHHHHHhccCCCEEEeccCCC-HHHHHHHHHHH---HcCCcEEEEeccCCHHHHH
Confidence                 111 112355666777777788899999999 65433333222   2355566666655544433

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.69  E-value=0.18  Score=49.27  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCccHHH-HHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTV-FTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTt-LA~~v~~  231 (394)
                      +-+++++||+.|||||| ||+..+.
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar  226 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAAR  226 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHH
Confidence            36899999999999995 7766654

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=95.67  E-value=0.0067  Score=53.93  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +|+|.|.+|+||||||+.+..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~   21 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIE   21 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999876

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=95.67  E-value=0.13  Score=54.81  Aligned_cols=23  Identities=22%  Similarity=0.127  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -..++|+|..|+|||||++.+..
T Consensus       491 G~~iaIvG~sGsGKSTLlklL~g  513 (694)
T TIGR03375       491 GEKVAIIGRIGSGKSTLLKLLLG  513 (694)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35789999999999999999864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=95.66  E-value=0.11  Score=47.57  Aligned_cols=21  Identities=19%  Similarity=0.132  Sum_probs=18.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +-.|+|++|+|||+||..++.
T Consensus         3 ~~ll~g~~G~GKS~lal~la~   23 (239)
T cd01125           3 VSALVAPGGTGKSSLLLVLAL   23 (239)
T ss_pred             eeEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999988875

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=95.66  E-value=0.17  Score=47.37  Aligned_cols=53  Identities=13%  Similarity=0.183  Sum_probs=31.4

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...+-.++-+++||+--.  +......+...+.....+..||++|.+.+.+...
T Consensus       179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~  233 (272)
T PRK14236        179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARV  233 (272)
T ss_pred             HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhh
Confidence            3344555678899999876  4444444444443222245688888887655443

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=95.65  E-value=0.085  Score=47.66  Aligned_cols=22  Identities=23%  Similarity=0.193  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|..|.|||||.+.+..
T Consensus        32 ~~~~I~G~nGsGKStLl~~l~G   53 (220)
T TIGR02982        32 EIVILTGPSGSGKTTLLTLIGG   53 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999975

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK05439 pantothenate kinase; Provisional

Probab=95.65  E-value=0.071  Score=50.80  Aligned_cols=25  Identities=12%  Similarity=-0.012  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhc
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ....+|+|.|.+|+||||+|+.+..
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~  108 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQA  108 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4577999999999999999998876

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=95.64  E-value=0.12  Score=52.96  Aligned_cols=132  Identities=10%  Similarity=-0.003  Sum_probs=0.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE-------------------EeCCCCCH------------------
Q 016120          211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV-------------------RVSIAYDF------------------  253 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-------------------~vs~~~~~------------------  253 (394)
                      +++|+|+.|+|||||.+.+..   ........+++                   .+.+.+..                  
T Consensus        32 ~~~l~G~nGsGKSTLl~~l~G---l~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~  108 (501)
T PRK11288         32 VHALMGENGAGKSTLLKILSG---NYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHK  108 (501)
T ss_pred             EEEEECCCCCCHHHHHHHHhC---CCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccc


Q ss_pred             ---------HHHHHHHHHHhCCCCCCccccCc--CHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-C
Q 016120          254 ---------GKMLDDIIKSVMPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-E  319 (394)
Q Consensus       254 ---------~~i~~~i~~~l~~~~~~~~~~~~--~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~  319 (394)
                               ..-..++++.++...........  .-+...-.+...+-.++-+++||+-..  +...-..+...+... .
T Consensus       109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~  188 (501)
T PRK11288        109 GGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA  188 (501)
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh


Q ss_pred             CCcEEEEecCChHHHhhchhcCCCceeeCCccCCC
Q 016120          320 NGSRVLITVTDPDLLASLEMENGEKIRRDSVLFGG  354 (394)
Q Consensus       320 ~gs~IivTTR~~~v~~~~~~~~~~~~~~~~~~~l~  354 (394)
                      .|..||++|.+...+...    .++++.     |.
T Consensus       189 ~g~tiiiitHd~~~~~~~----~d~i~~-----l~  214 (501)
T PRK11288        189 EGRVILYVSHRMEEIFAL----CDAITV-----FK  214 (501)
T ss_pred             CCCEEEEEeCCHHHHHHh----CCEEEE-----EE

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=95.64  E-value=0.16  Score=47.42  Aligned_cols=51  Identities=8%  Similarity=0.030  Sum_probs=32.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIK  262 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~  262 (394)
                      -.++.|.|.+|+||||++..+..+. ...+=..++|++...  ....+...+..
T Consensus        30 g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~   80 (271)
T cd01122          30 GELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLG   80 (271)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHH
Confidence            3477899999999999998887632 122124567877654  33444444433

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=95.63  E-value=0.16  Score=51.35  Aligned_cols=133  Identities=11%  Similarity=0.057  Sum_probs=68.3

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      .++|......++...+..-......+.|.|..|+||+++|+.+....  .......+-++...-  ....+...+  ++.
T Consensus       135 ~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~--~~~~~~~~~~~c~~~--~~~~~~~~l--fg~  208 (463)
T TIGR01818       135 ELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS--PRANGPFIALNMAAI--PKDLIESEL--FGH  208 (463)
T ss_pred             ceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC--CCCCCCeEEEeCCCC--CHHHHHHHh--cCC
Confidence            57777766677766664432233456799999999999999998732  111112222332222  223333222  221


Q ss_pred             CCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEEEecCCh
Q 016120          267 PSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDE-----------NGSRVLITVTDP  331 (394)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~IivTTR~~  331 (394)
                      ...   .+.....   ......-....-.|+||+|.. .......+...+..+.           .+.+||.||...
T Consensus       209 ~~~---~~~~~~~---~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~  279 (463)
T TIGR01818       209 EKG---AFTGANT---RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN  279 (463)
T ss_pred             CCC---CCCCccc---CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence            111   0000000   000001112234589999988 5666677776665431           245788877643

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]

Probab=95.63  E-value=0.075  Score=49.63  Aligned_cols=116  Identities=12%  Similarity=0.062  Sum_probs=78.8

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +|+|-.. ..+++.++......-+.+.++|+.|+|||+-++.+++.      .+..+-+..++.+....++..+......
T Consensus        73 ~~l~tkt-~r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~  145 (297)
T COG2842          73 DFLETKT-VRRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFG  145 (297)
T ss_pred             cccccch-hHhHhhhhhhhhhcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhc
Confidence            5555433 23344444433333348889999999999999999982      2333444777777777777777766655


Q ss_pred             CCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhC
Q 016120          267 PSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELL  315 (394)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l  315 (394)
                      ...      .........+...+.+..-+++.|+... ....++.+....
T Consensus       146 ~~~------~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~  189 (297)
T COG2842         146 ATD------GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIH  189 (297)
T ss_pred             ccc------hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHH
Confidence            421      1677778888888888889999999887 566677776544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	394
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	2e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-14

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 95.3 bits (237), Expect = 2e-21
 Identities = 39/263 (14%), Positives = 85/263 (32%), Gaps = 25/263 (9%)

Query: 82  LLDLEESDEEDVERADILEILEDINDFVHESEEAIDTFFINIMQQQNSENESESSTDMA- 140
           LL   E+ E+D++ + I++ +          EE +        +            + + 
Sbjct: 9   LLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSY 68

Query: 141 ---LLVELHTKIIDIRNRMQQLPPGDNGFDISDKCNEIIHLLSEGQPRLDINE------- 190
                  LH    D+   +    P  +     D  + I   +        + +       
Sbjct: 69  VSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLCEGGVPQRPVVFVT 128

Query: 191 FERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVK--FYFDCLAWVRVS 248
            ++    +   L +       V I   +G  K+V  A+   +  +    +   + WV V 
Sbjct: 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 188

Query: 249 IAYDFGK--MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNK--KYFIVLDDVFDN 304
                G    L ++   +      S  +  + +  K  LR  +  K  +  ++LDDV   
Sbjct: 189 KQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDV--- 245

Query: 305 SEIWSDLEELLPDDENGSRVLIT 327
              W     +L   ++  ++L+T
Sbjct: 246 ---WD--SWVLKAFDSQCQILLT 263

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 90.3 bits (223), Expect = 1e-19
 Identities = 61/389 (15%), Positives = 128/389 (32%), Gaps = 96/389 (24%)

Query: 53  NYEADMARHLFQFIREEFDDSKISLPFLELLDLEESDEEDVERADILEIL--EDINDFVH 110
           ++E    ++ ++ I   F+D      F++  + +  D +D+ +     IL  E+I+  + 
Sbjct: 8   DFETGEHQYQYKDILSVFED-----AFVD--NFDCKDVQDMPK----SILSKEEIDHIIM 56

Query: 111 ES--EEAIDTFFINIMQQQNSEN----ESESSTDMALLVELHTKIIDIRNRMQQLPPGDN 164
                      F  ++ +Q        E     +   L+        I+   +Q P    
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS------PIKTEQRQ-PSMMT 109

Query: 165 GFDIS--DKCNEIIHLLSEGQ-PRLDINEFERGREELFDLLIEGPSGLAVVAILDSSGFD 221
              I   D+      + ++    RL    + + R+ L +L       + +  +L   G  
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQ--PYLKLRQALLELRPAK--NVLIDGVL---GSG 162

Query: 222 KTVFTADTYNNDHVKFYFDC-LAWV---RVSIAYDFGKMLDDIIKSVMPPSRVSVIIGED 277
           KT    D   +  V+   D  + W+     +      +ML  ++  + P          +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 278 YQLK----KSILRDYLTNKKY---FIVLDDVFDNSEIWSDLEELLPDDENGSRVLIT--- 327
            +L+    ++ LR  L +K Y    +VL +V + ++ W+             ++L+T   
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAF-------NLSCKILLTTRF 274

Query: 328 --VTDP------------------------DLLAS-LEMENGEKIRRDSVLFGGPLI--- 357
             VTD                          LL   L+    + + R  VL   P     
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLPR-EVLTTNPRRLSI 332

Query: 358 ---RLKHEA--WQFFILHYGSMPLENYLQ 381
               ++     W  +  H     L   ++
Sbjct: 333 IAESIRDGLATWDNW-KHVNCDKLTTIIE 360

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 6e-11
 Identities = 51/328 (15%), Positives = 101/328 (30%), Gaps = 66/328 (20%)

Query: 2   LEFHLRLFCER-----LKRVLAGVEGTLPLPDSTNLTPLFQNLLTES------------- 43
           L+ H            L + L      LP  +     P   +++ ES             
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 44  -------EIIATTLLGNYEADMARHLFQ--FIREEF-DDSKISLPFLELLDLEESDEEDV 93
                   II ++L     A+  R +F    +   F   + I    L L+   +  + DV
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEY-RKMFDRLSV---FPPSAHIPTILLSLI-WFDVIKSDV 404

Query: 94  ERADILEILEDINDFVHESEEAIDTFFINIMQQQNSENESESSTDMALLVELHTKIIDIR 153
               ++  L   +    + +E   T  I  +  +                 LH  I+D  
Sbjct: 405 M--VVVNKLHKYSLVEKQPKE--STISIPSIYLELKVKLEN-------EYALHRSIVDHY 453

Query: 154 NRMQQLPPGDNGFDISDK--CNEIIHLLSEGQPRLDINEFERGREELFDLLIEGPSGLAV 211
           N  +     D      D+   + I H L   +    +  F   R    D        L  
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF---RMVFLDF-----RFLEQ 505

Query: 212 VAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS 271
               DS+ ++ +    +T     +KFY     ++  +    + ++++ I+  +      +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQ--LKFYKP---YICDNDP-KYERLVNAILDFLPKIEE-N 558

Query: 272 VIIGEDYQLKKSILRDYLTNKKYFIVLD 299
           +I  +       +LR  L  +   I  +
Sbjct: 559 LICSKY----TDLLRIALMAEDEAIFEE 582

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 73.9 bits (181), Expect = 2e-14
 Identities = 46/272 (16%), Positives = 74/272 (27%), Gaps = 36/272 (13%)

Query: 82  LLDLEESDEEDVERADILEILEDINDFVHESEEAIDTFFIN-------IMQQQNSENESE 134
           L         D E  D L  LE  N F  +  E I             +   +   +E  
Sbjct: 10  LSTAHTRLIHDFEPRDALTYLEGKNIFTEDHSELISKMSTRLERIANFLRIYRRQASELG 69

Query: 135 SSTDMAL------LVELHTKIIDIRNRMQQLPPGDNGFDISDKCNEIIHLLSEGQPRLDI 188
              D         L +     ID       L           +      LL    P+   
Sbjct: 70  PLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDRKLLLGNVPKQMT 129

Query: 189 NEFERGREELFDLLIE-----GPSGLAVVAILDSSGFDKTVFTADTYNND--HVKFYFDC 241
                 RE   D +I+            + +   +G  K+V  +   +     +   +D 
Sbjct: 130 C---YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDS 186

Query: 242 LAWVRVSIAYD------FGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYF 295
           + W++ S          F  +L  +       +  SV       LK+ I    +      
Sbjct: 187 IVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTL 246

Query: 296 IVLDDVFDNSEIWSDLEELLPDDENGSRVLIT 327
            V DDV        + E +    E   R L+T
Sbjct: 247 FVFDDV------VQE-ETIRWAQELRLRCLVT 271

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	394
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.91
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.9
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.85
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	99.5
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.38
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.26
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.25
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.23
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.23
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.2
2fna_A	357	Conserved hypothetical protein; structural genomic	99.17
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.14
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.06
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.88
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.7
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.67
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.62
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.5
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.49
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.48
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.35
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.3
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.27
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.27
3bos_A	242	Putative DNA replication factor; P-loop containing	98.25
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.25
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.24
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.24
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	98.22
3pvs_A	447	Replication-associated recombination protein A; ma	98.21
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.19
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.16
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.15
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.15
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.14
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.13
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.1
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.04
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	98.04
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.03
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.01
3co5_A	143	Putative two-component system transcriptional RES	98.01
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.0
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.98
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.98
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.97
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.97
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.96
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.94
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.92
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.87
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.86
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.84
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.84
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.83
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.82
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.74
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.73
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.72
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.67
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.66
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.63
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.63
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.61
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.56
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.55
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.55
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.54
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.53
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.43
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.41
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.41
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.36
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.36
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.35
2qgz_A	308	Helicase loader, putative primosome component; str	97.28
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.27
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.23
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.21
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.2
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.19
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.12
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.09
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.07
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.06
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.04
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.01
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.99
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.98
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.94
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.92
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.92
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.88
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.85
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.84
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.82
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.81
3io5_A	333	Recombination and repair protein; storage dimer, i	96.81
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.8
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.79
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.76
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.76
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.75
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.72
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.71
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.71
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.7
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.69
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.68
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.67
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.67
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.61
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.56
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.55
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.54
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.54
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	96.52
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.5
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.45
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.45
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.44
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.4
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.38
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.38
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.34
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.34
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.33
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.32
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.24
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.23
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.15
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.13
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.12
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.06
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.06
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.04
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.02
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.95
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.94
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.92
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.91
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.89
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.89
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.87
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.86
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.82
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.81
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.8
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.79
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.75
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.71
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.71
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.7
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.68
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.65
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.63
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.58
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.58
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.57
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.56
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.54
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.5
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.49
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.46
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.45
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.44
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.43
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.43
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.4
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.4
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.4
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.39
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.39
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.39
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.38
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.37
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.37
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.37
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.36
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.35
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.34
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.32
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	95.32
3ice_A	422	Transcription termination factor RHO; transcriptio	95.3
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.29
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.28
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.27
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.27
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	95.25
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.25
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.25
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.24
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	95.24
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.24
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.23
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.22
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.22
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.21
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.2
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.2
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.18
2xxa_A	433	Signal recognition particle protein; protein trans	95.15
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.13
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.1
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.1
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.1
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.08
1via_A	175	Shikimate kinase; structural genomics, transferase	95.08
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.08
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.07
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.05
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.04
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.03
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.01
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.0
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	95.0
3fwy_A	314	Light-independent protochlorophyllide reductase I	94.99
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.99
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	94.97
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	94.97
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.96
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.9
2vli_A	183	Antibiotic resistance protein; transferase, tunica	94.88
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	94.88
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	94.87
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.87
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.87
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	94.87
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.85
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	94.84
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	94.84
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	94.83
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	94.83
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	94.81
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.81
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	94.81
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	94.8
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	94.79
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	94.74
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.73
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.7
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.7
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	94.69
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	94.68
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.65
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.65
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.63
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	94.63
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	94.61
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	94.61
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.59
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	94.57
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.52
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	94.51
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	94.5
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.5
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	94.49
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	94.48
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.46
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	94.45
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	94.45
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	94.41
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	94.36
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.31
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.3
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	94.25
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.22
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	94.21
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	94.19
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.16
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	94.15
3l0o_A	427	Transcription termination factor RHO; helicase, RH	94.15
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	94.12
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.1
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	94.09
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	94.07
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	94.05
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	93.99
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	93.97
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	93.94
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	93.93
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	93.92
1g6h_A	257	High-affinity branched-chain amino acid transport	93.91
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	93.87
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.85
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	93.85
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	93.83
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	93.83
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	93.83
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	93.82
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	93.8
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	93.8
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.79
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	93.79
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	93.79
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	93.78
2wji_A	165	Ferrous iron transport protein B homolog; membrane	93.77
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	93.75
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	93.69
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.69
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	93.68
1tue_A	212	Replication protein E1; helicase, replication, E1E	93.68
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.67
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	93.61
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	93.58
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	93.58
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	93.57
2og2_A	359	Putative signal recognition particle receptor; nuc	93.51
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	93.51
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	93.47
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	93.47
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	93.45
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.45
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	93.45
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	93.43
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	93.35
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	93.34
2eyu_A	261	Twitching motility protein PILT; pilus retraction	93.33
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	93.33
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	93.28
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	93.28
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	93.28
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	93.26
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	93.22
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	93.15
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	93.14
3end_A	307	Light-independent protochlorophyllide reductase ir	93.14
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	93.1
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.1
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	93.07
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	93.07
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	93.01
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	93.01
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	92.99
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	92.98
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	92.92
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	92.91
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	92.89
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	92.88
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	92.88
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	92.85
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	92.82
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	92.81
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	92.75
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	92.74
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	92.73
2ged_A	193	SR-beta, signal recognition particle receptor beta	92.73
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	92.72
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	92.71
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	92.7
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	92.69
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	92.65
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	92.64
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	92.62
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	92.61
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	92.58
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	92.58
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	92.56
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	92.53
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	92.5
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	92.5
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	92.49
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	92.48
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	92.47
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	92.45
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	92.44
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	92.44
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	92.42
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	92.42
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	92.42
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	92.39
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.38
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	92.36
1nrj_B	218	SR-beta, signal recognition particle receptor beta	92.35
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	92.35
3kta_A	182	Chromosome segregation protein SMC; structural mai	92.33
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	92.3
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	92.28
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	92.26
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	92.26
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	92.23
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	92.22
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	92.22
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	92.2
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	92.19
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	92.12
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.05
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	92.04
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	92.0
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	91.99
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	91.98
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.97
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	91.97
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	91.94
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	91.91
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	91.87
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	91.87
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	91.86
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	91.85
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	91.85
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	91.84
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	91.82
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	91.8
3llu_A	196	RAS-related GTP-binding protein C; structural geno	91.77
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	91.77
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	91.74
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	91.73
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	91.72
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	91.72
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	91.69
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	91.68
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	91.67
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	91.67
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	91.63
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	91.63
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	91.62
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	91.62
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	91.6
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	91.59
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	91.59
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	91.57
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	91.55
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	91.54
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.52
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	91.52
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	91.5
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	91.48
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	91.47
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	91.47
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	91.43
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	91.38
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	91.37
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	91.36
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	91.34
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	91.3
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	91.28
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	91.27
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	91.27
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	91.27
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	91.23
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	91.23
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	91.21
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	91.18
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	91.16
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	91.16
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	91.16
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	91.12
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	91.11
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	91.11
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	91.09
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	91.09
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	91.09
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	91.08
2fh5_B	214	SR-beta, signal recognition particle receptor beta	91.06
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	91.06
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	91.05
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	91.01
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	91.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	91.0
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	91.0
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	90.99
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	90.98
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	90.96
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	90.96
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	90.9
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	90.87
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	90.86
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	90.86
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	90.83
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	90.81
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	90.8
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	90.79
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	90.79
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	90.79
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	90.78
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	90.78
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	90.77
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	90.73
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	90.68
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	90.68
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	90.67
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	90.58
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	90.55
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	90.51
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	90.5
3cwq_A	209	Para family chromosome partitioning protein; alpha	90.5
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	90.5
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	90.46
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	90.46
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	90.44
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	90.43
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	90.42
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	90.39
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	90.35
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	90.35
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	90.32
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	90.29
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	90.28
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	90.26

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.96  E-value=2.7e-28  Score=249.66  Aligned_cols=169  Identities=15%  Similarity=0.169  Sum_probs=141.8

Q ss_pred             ceecccHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHhc--CcccccccCeeEEEEeCCCC--CHHHHHHHHHHH
Q 016120          189 NEFERGREELFDLLIEG-PSGLAVVAILDSSGFDKTVFTADTYN--NDHVKFYFDCLAWVRVSIAY--DFGKMLDDIIKS  263 (394)
Q Consensus       189 ~Gr~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~i~~~i~~~  263 (394)
                      |||+.++++|.++|..+ +...++|+|+||||+||||||+.+|+  +.+++.+|++++||++++.+  ++..++..|+.+
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~  210 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM  210 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence            59999999999999765 34689999999999999999999998  67899999999999999985  899999999999


Q ss_pred             hCCCCC--CccccCc-CHHHHHHHHHHHccCC-eEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchh
Q 016120          264 VMPPSR--VSVIIGE-DYQLKKSILRDYLTNK-KYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEM  339 (394)
Q Consensus       264 l~~~~~--~~~~~~~-~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~  339 (394)
                      ++....  ...+.+. +...+...+++.|+++ ||||||||||+ .+.+ .+..     .+||+||||||++.++..+  
T Consensus       211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~-~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~--  281 (549)
T 2a5y_B          211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ-EETI-RWAQ-----ELRLRCLVTTRDVEISNAA--  281 (549)
T ss_dssp             HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC-HHHH-HHHH-----HTTCEEEEEESBGGGGGGC--
T ss_pred             HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCC-chhh-cccc-----cCCCEEEEEcCCHHHHHHc--
Confidence            987532  1122334 6778899999999996 99999999999 6644 1111     1699999999999999887  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~  373 (394)
                      .....+|+     |++|  +.++||+||.+.++.
T Consensus       282 ~~~~~~~~-----l~~L--~~~ea~~Lf~~~a~~  308 (549)
T 2a5y_B          282 SQTCEFIE-----VTSL--EIDECYDFLEAYGMP  308 (549)
T ss_dssp             CSCEEEEE-----CCCC--CHHHHHHHHHHTSCC
T ss_pred             CCCCeEEE-----CCCC--CHHHHHHHHHHHhcC
Confidence            22456899     9999  999999999999543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.91  E-value=1.5e-24  Score=240.66  Aligned_cols=170  Identities=16%  Similarity=0.214  Sum_probs=136.9

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc-cccc-CeeEEEEeCCCCC--HHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV-KFYF-DCLAWVRVSIAYD--FGKMLDDIIK  262 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~~i~~~i~~  262 (394)
                      .|+||+.++++|.++|...+.+.++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+  ....+..++.
T Consensus       125 ~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  204 (1249)
T 3sfz_A          125 IFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCM  204 (1249)
T ss_dssp             SCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHH
T ss_pred             eeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHH
Confidence            7999999999999999876667899999999999999999999996543 5556 5677999998654  4555777888


Q ss_pred             HhCCCCCCccccCcCHHHHHHHHHHHccCC--eEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhc
Q 016120          263 SVMPPSRVSVIIGEDYQLKKSILRDYLTNK--KYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEME  340 (394)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~  340 (394)
                      .+............+.+.+...++..+.++  ||||||||||+ ...|..+       .+||+||||||++.++..+  .
T Consensus       205 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~-~~~~~~~-------~~~~~ilvTtR~~~~~~~~--~  274 (1249)
T 3sfz_A          205 RLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD-PWVLKAF-------DNQCQILLTTRDKSVTDSV--M  274 (1249)
T ss_dssp             HHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC-HHHHTTT-------CSSCEEEEEESSTTTTTTC--C
T ss_pred             HhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC-HHHHHhh-------cCCCEEEEEcCCHHHHHhh--c
Confidence            887654322222237888999999999877  99999999999 6554432       5789999999999998654  2


Q ss_pred             CCCceeeCCccCCCC-CCCChHHHHHHHHHHhCC
Q 016120          341 NGEKIRRDSVLFGGP-LIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       341 ~~~~~~~~~~~~l~~-L~~~~~~~~~Lf~~~~~~  373 (394)
                      +....++     +++ |  +.++||+||...++.
T Consensus       275 ~~~~~~~-----~~~~l--~~~~a~~l~~~~~~~  301 (1249)
T 3sfz_A          275 GPKHVVP-----VESGL--GREKGLEILSLFVNM  301 (1249)
T ss_dssp             SCBCCEE-----CCSSC--CHHHHHHHHHHHHTS
T ss_pred             CCceEEE-----ecCCC--CHHHHHHHHHHhhCC
Confidence            5677888     996 9  999999999988653

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.90  E-value=7e-24  Score=223.88  Aligned_cols=168  Identities=16%  Similarity=0.126  Sum_probs=133.4

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCe-eEEEEeCCCCCHHHHHHHHHHHhC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDC-LAWVRVSIAYDFGKMLDDIIKSVM  265 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~  265 (394)
                      ..+||+.++++|.++|...+ +.++|+|+||||+||||||+.+|++.+++.+|+. ++|+++++.++...++..++..++
T Consensus       129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~  207 (1221)
T 1vt4_I          129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY  207 (1221)
T ss_dssp             SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            45999999999999998643 4789999999999999999999998788999987 899999999998888888877542


Q ss_pred             CCC---CCcc----ccCcCHHHHHHHHHHHc---cCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHh
Q 016120          266 PPS---RVSV----IIGEDYQLKKSILRDYL---TNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLA  335 (394)
Q Consensus       266 ~~~---~~~~----~~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~  335 (394)
                      ...   ....    ....+.+.+...+++.|   .+||+||||||||+ .+.|+.+.       +||+||||||++.++.
T Consensus       208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd-~eqLe~f~-------pGSRILVTTRd~~Va~  279 (1221)
T 1vt4_I          208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFN-------LSCKILLTTRFKQVTD  279 (1221)
T ss_dssp             HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC-HHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred             hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh-HHHHHhhC-------CCeEEEEeccChHHHH
Confidence            211   1000    00114456677777766   68999999999999 88887652       6899999999999987


Q ss_pred             hchhcCCCceeeCCccCCC------CCCCChHHHHHHHHHHhCC
Q 016120          336 SLEMENGEKIRRDSVLFGG------PLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       336 ~~~~~~~~~~~~~~~~~l~------~L~~~~~~~~~Lf~~~~~~  373 (394)
                      .+   ....+|.     ++      +|  +.+|||+||++.++.
T Consensus       280 ~l---~g~~vy~-----LeL~d~dL~L--S~eEA~eLF~~~~g~  313 (1221)
T 1vt4_I          280 FL---SAATTTH-----ISLDHHSMTL--TPDEVKSLLLKYLDC  313 (1221)
T ss_dssp             HH---HHHSSCE-----EEECSSSSCC--CHHHHHHHHHHHHCC
T ss_pred             hc---CCCeEEE-----ecCccccCCc--CHHHHHHHHHHHcCC
Confidence            65   2334667     77      89  999999999998754

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.85  E-value=5.9e-21  Score=196.85  Aligned_cols=169  Identities=18%  Similarity=0.203  Sum_probs=126.0

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc-cccc-CeeEEEEeCCCCCHHHHHH---HHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV-KFYF-DCLAWVRVSIAYDFGKMLD---DII  261 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~i~~---~i~  261 (394)
                      .|+||+.++++|.++|.....+.++++|+||||+||||||+.++++.++ ..+| +.++|++++.. +...++.   .++
T Consensus       125 ~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~  203 (591)
T 1z6t_A          125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLC  203 (591)
T ss_dssp             SCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHH
T ss_pred             eecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHH
Confidence            8999999999999999865556889999999999999999999997655 7889 47999999876 3333333   344


Q ss_pred             HHhCCCCCCccccCc-CHHHHHHHHHHHccC--CeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhch
Q 016120          262 KSVMPPSRVSVIIGE-DYQLKKSILRDYLTN--KKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLE  338 (394)
Q Consensus       262 ~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~  338 (394)
                      ..++...... .... +.+.+...+...+.+  +++||||||||+ ...+.    .+   .+||+||||||++.++..+ 
T Consensus       204 ~~l~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~-~~~l~----~l---~~~~~ilvTsR~~~~~~~~-  273 (591)
T 1z6t_A          204 TRLDQDESFS-QRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD-SWVLK----AF---DSQCQILLTTRDKSVTDSV-  273 (591)
T ss_dssp             HHHCSSCCSC-SSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC-HHHHH----TT---CSSCEEEEEESCGGGGTTC-
T ss_pred             HHhccccccc-cCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCC-HHHHH----Hh---cCCCeEEEECCCcHHHHhc-
Confidence            4555321100 1122 677888888888865  789999999999 54433    33   4689999999999988766 


Q ss_pred             hcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120          339 MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       339 ~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~  373 (394)
                         ....+.  +-.+++|  +.+++++||.+.++.
T Consensus       274 ---~~~~~~--v~~l~~L--~~~ea~~L~~~~~~~  301 (591)
T 1z6t_A          274 ---MGPKYV--VPVESSL--GKEKGLEILSLFVNM  301 (591)
T ss_dssp             ---CSCEEE--EECCSSC--CHHHHHHHHHHHHTS
T ss_pred             ---CCCceE--eecCCCC--CHHHHHHHHHHHhCC
Confidence               234444  0003689  999999999998764

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=99.50  E-value=8.6e-14  Score=111.85  Aligned_cols=82  Identities=13%  Similarity=0.201  Sum_probs=69.0

Q ss_pred             chhHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccc--cccChHHHHHHHHHHHH
Q 016120           31 NLTPLFQNLLTESEIIATTLLGNYEADMARHLFQFIREEFDDSKISLPFLELLDLEESDEE--DVERADILEILEDINDF  108 (394)
Q Consensus        31 ~l~p~~~~l~s~~~~~~~~ll~~~~~~~~~~l~~~~~~~l~~L~~~L~~i~~~~l~~ae~~--~~~~~~~~~Wl~~l~~~  108 (394)
                      ++++++++|.+.       +..++      .++.|++++++.|+++|+.|+++ |.+|+.+  +..++.++.|+++||++
T Consensus         2 ~v~~ll~KL~~l-------l~~E~------~l~~gv~~~i~~Lk~eL~~m~a~-L~da~~~~~~~~d~~vk~W~~~vrdl   67 (115)
T 3qfl_A            2 AISNLIPKLGEL-------LTEEF------KLHKGVKKNIEDLGKELESMNAA-LIKIGEVPREQLDSQDKLWADEVREL   67 (115)
T ss_dssp             TTCSHHHHHHHH-------HHHHH------HHHHHHHHHHHHHHHHHHHHHHH-HHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH-------HHHHH------HHHhchHHHHHHHHHHHHHHHHH-HHHHHHhccccCCHHHHHHHHHHHHH
Confidence            456677766664       11222      47899999999999999999999 9999987  56899999999999999


Q ss_pred             hhhhHhHhhhhHHhhhhc
Q 016120          109 VHESEEAIDTFFINIMQQ  126 (394)
Q Consensus       109 a~d~eD~lD~~~~~~~~~  126 (394)
                      +||+||+||+|.++....
T Consensus        68 aYD~ED~iD~f~~~~~~~   85 (115)
T 3qfl_A           68 SYVIEDVVDKFLVQVDGI   85 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            999999999999988653

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.38  E-value=2.1e-12  Score=126.47  Aligned_cols=172  Identities=15%  Similarity=0.067  Sum_probs=115.8

Q ss_pred             ccceecccHHHHHHHH-hcC--C--CCceEEEE--EcCCCccHHHHHHHHhcCccccc-----ccC-eeEEEEeCCCCCH
Q 016120          187 DINEFERGREELFDLL-IEG--P--SGLAVVAI--LDSSGFDKTVFTADTYNNDHVKF-----YFD-CLAWVRVSIAYDF  253 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L-~~~--~--~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~~-----~F~-~~~wv~vs~~~~~  253 (394)
                      .++||+.+++++.+.| ...  +  .....+.|  +|++|+||||||+.+++.  ...     .|. ..+|+++....+.
T Consensus        23 ~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  100 (412)
T 1w5s_A           23 ELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAPNL  100 (412)
T ss_dssp             SCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred             CCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCCCH
Confidence            8999999999999988 421  1  23455666  999999999999999983  322     123 3568887777788


Q ss_pred             HHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHHHcc--CCeEEEEEeCCCC--C-----chhHHHHHhhCCCC---C-
Q 016120          254 GKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD--N-----SEIWSDLEELLPDD---E-  319 (394)
Q Consensus       254 ~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~--~-----~~~~~~l~~~l~~~---~-  319 (394)
                      ..++..++..++...+    ... +...+...+.+.+.  +++++|||||++.  .     .+.+..+...+...   . 
T Consensus       101 ~~~~~~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~  176 (412)
T 1w5s_A          101 YTILSLIVRQTGYPIQ----VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG  176 (412)
T ss_dssp             HHHHHHHHHHHTCCCC----CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred             HHHHHHHHHHhCCCCC----CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence            9999999999876532    112 45566677777764  6899999999987  2     13344333333211   2 


Q ss_pred             -CCcEEEEecCChHHHhhch------hcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          320 -NGSRVLITVTDPDLLASLE------MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       320 -~gs~IivTTR~~~v~~~~~------~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                       .+..||+||+...+...+.      .......++     ++||  +.++.+++|...+
T Consensus       177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~-----l~~l--~~~e~~~ll~~~~  228 (412)
T 1w5s_A          177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLH-----LPAY--KSRELYTILEQRA  228 (412)
T ss_dssp             CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred             CceEEEEEEeccccHHHHHhhhcchhhhhcCCeee-----eCCC--CHHHHHHHHHHHH
Confidence             3445887887665432220      011122378     9999  9999999997653

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.26  E-value=2.5e-11  Score=117.75  Aligned_cols=172  Identities=14%  Similarity=-0.025  Sum_probs=116.1

Q ss_pred             ccceecccHHHHHHHHhc--CCCCceEEEEEcCCCccHHHHHHHHhcCcccccc--------cCeeEEEEeCCCC-CHHH
Q 016120          187 DINEFERGREELFDLLIE--GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY--------FDCLAWVRVSIAY-DFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--------F~~~~wv~vs~~~-~~~~  255 (394)
                      +++||+.+++++.+++..  .....+.+.|+|++|+|||+||+.+++.  ....        ....+|++.+... +...
T Consensus        21 ~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   98 (384)
T 2qby_B           21 EIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTPQA   98 (384)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence            799999999999988864  2334568899999999999999999983  3221        2346788877766 7888


Q ss_pred             HHHHHHHHhCCCCCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC-Cchh-HHH-HHhhCCCCCCCcEEEEecCCh
Q 016120          256 MLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-NSEI-WSD-LEELLPDDENGSRVLITVTDP  331 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~-~~~-l~~~l~~~~~gs~IivTTR~~  331 (394)
                      ++..++..+.+...   .... +...+...+.+.+..++.+|||||++. .... .+. +...+... .+..||+||+..
T Consensus        99 ~~~~l~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~  174 (384)
T 2qby_B           99 VLSSLAGKLTGFSV---PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDI  174 (384)
T ss_dssp             HHHHHHHHHHCSCC---CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred             HHHHHHHHhcCCCC---CCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence            88998888833221   0122 456677778888877666999999987 1111 222 22222212 577889898875


Q ss_pred             HHHhhch---hcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          332 DLLASLE---MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       332 ~v~~~~~---~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .....+.   .......++     ++|+  +.++...+|.+.+
T Consensus       175 ~~~~~l~~~l~sr~~~~i~-----l~~l--~~~~~~~il~~~~  210 (384)
T 2qby_B          175 NVRDYMEPRVLSSLGPSVI-----FKPY--DAEQLKFILSKYA  210 (384)
T ss_dssp             TTTTTSCHHHHHTCCCEEE-----ECCC--CHHHHHHHHHHHH
T ss_pred             chHhhhCHHHHhcCCCeEE-----ECCC--CHHHHHHHHHHHH
Confidence            3211110   001123788     9999  9999999999874

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.25  E-value=4.4e-11  Score=115.77  Aligned_cols=172  Identities=12%  Similarity=-0.014  Sum_probs=115.8

Q ss_pred             ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcCcccccc------cCeeEEEEeCCCCCHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY------FDCLAWVRVSIAYDFGKMLD  258 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~wv~vs~~~~~~~i~~  258 (394)
                      .++||+.+++++.+++...  ......+.|+|++|+||||||+.+++.  ....      -...+|++.....+...++.
T Consensus        20 ~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   97 (387)
T 2v1u_A           20 VLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRVAS   97 (387)
T ss_dssp             CCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence            8999999999999988542  334567889999999999999999973  3221      12456888888888999999


Q ss_pred             HHHHHhCCCCCCccccCc-CHHHHHHHHHHHc--cCCeEEEEEeCCCC-Cch--hHHHH---HhhCCCC--CCCcEEEEe
Q 016120          259 DIIKSVMPPSRVSVIIGE-DYQLKKSILRDYL--TNKKYFIVLDDVFD-NSE--IWSDL---EELLPDD--ENGSRVLIT  327 (394)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l--~~kr~LlVlDdv~~-~~~--~~~~l---~~~l~~~--~~gs~IivT  327 (394)
                      .++..++...+    ... +...+...+.+.+  .+++.+||||+++. ...  ..+.+   .......  ..+..+|.|
T Consensus        98 ~l~~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~  173 (387)
T 2v1u_A           98 AIAEAVGVRVP----FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI  173 (387)
T ss_dssp             HHHHHHSCCCC----SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred             HHHHHhCCCCC----CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence            99999976533    122 5666677777776  35689999999987 111  22223   2222111  335567777


Q ss_pred             cCChHHHh----hchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          328 VTDPDLLA----SLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       328 TR~~~v~~----~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      |+......    .....-....+.     ++|+  +.++...++.+.+
T Consensus       174 t~~~~~~~~l~~~l~~r~~~~~i~-----l~~l--~~~~~~~il~~~~  214 (387)
T 2v1u_A          174 TNSLGFVENLEPRVKSSLGEVELV-----FPPY--TAPQLRDILETRA  214 (387)
T ss_dssp             CSCSTTSSSSCHHHHTTTTSEECC-----BCCC--CHHHHHHHHHHHH
T ss_pred             ECCCchHhhhCHHHHhcCCCeEEe-----eCCC--CHHHHHHHHHHHH
Confidence            77653211    110001124677     9999  9999999998874

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.23  E-value=2e-10  Score=111.43  Aligned_cols=172  Identities=19%  Similarity=0.203  Sum_probs=122.8

Q ss_pred             ccceecccHHHHHHHHhcC----CCCceEEEEEcCCCccHHHHHHHHhcCccccccc-CeeEEEEeCCCCCHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG----PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYF-DCLAWVRVSIAYDFGKMLDDII  261 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~  261 (394)
                      .++||+.+++++.+++...    .+..+.+.|+|++|+|||||++.+++  ...... ...+|++.+...+...++..++
T Consensus        18 ~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~   95 (389)
T 1fnn_A           18 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEIA   95 (389)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence            7999999999999988652    22234889999999999999999987  333321 2457788778888889999999


Q ss_pred             HHhCCCCCCccccCc-CHHHHHHHHHHHcc--CCeEEEEEeCCCC-CchhHHHHHhhCCCCC----CCcEEEEecCChHH
Q 016120          262 KSVMPPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-NSEIWSDLEELLPDDE----NGSRVLITVTDPDL  333 (394)
Q Consensus       262 ~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~----~gs~IivTTR~~~v  333 (394)
                      ..++...+    ... +...+...+...+.  +++.+||||+++. +...+..+...+....    .+..||+||+....
T Consensus        96 ~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~  171 (389)
T 1fnn_A           96 RSLNIPFP----RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV  171 (389)
T ss_dssp             HHTTCCCC----SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred             HHhCccCC----CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence            98876432    122 56666666666663  5689999999987 5566666666654322    36778888887654


Q ss_pred             Hhhchh----cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          334 LASLEM----ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       334 ~~~~~~----~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      ...+..    .-....++     ++|+  +.++...++...+
T Consensus       172 ~~~l~~~~~~r~~~~~i~-----~~pl--~~~~~~~~l~~~~  206 (389)
T 1fnn_A          172 LNNLDPSTRGIMGKYVIR-----FSPY--TKDQIFDILLDRA  206 (389)
T ss_dssp             HHTSCHHHHHHHTTCEEE-----CCCC--BHHHHHHHHHHHH
T ss_pred             HHHhCHHhhhcCCCceEE-----eCCC--CHHHHHHHHHHHH
Confidence            433310    00123688     9999  9999999998874

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.23  E-value=2.4e-11  Score=117.53  Aligned_cols=172  Identities=13%  Similarity=0.070  Sum_probs=116.6

Q ss_pred             ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcCccccccc---CeeEEEEeCCCCCHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYF---DCLAWVRVSIAYDFGKMLDDII  261 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~i~~~i~  261 (394)
                      +++||+.+++.+.+++...  ......+.|+|++|+||||||+.+++  .....+   ...+|++.....+...++..++
T Consensus        21 ~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~   98 (386)
T 2qby_A           21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADLL   98 (386)
T ss_dssp             CCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred             CCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence            8999999999999988752  33456888999999999999999998  443332   2457887766667778888888


Q ss_pred             HHhCCCCCCccccCc-CHHHHHHHHHHHcc--CCeEEEEEeCCCC-C----chhHHHHHhhCCC-CCCCcEEEEecCChH
Q 016120          262 KSVMPPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-N----SEIWSDLEELLPD-DENGSRVLITVTDPD  332 (394)
Q Consensus       262 ~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~-~----~~~~~~l~~~l~~-~~~gs~IivTTR~~~  332 (394)
                      ..++...+    ... +.......+.+.+.  +++.+||||+++. .    ...+..+...+.. ...+..+|+||+...
T Consensus        99 ~~l~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~  174 (386)
T 2qby_A           99 ESLDVKVP----FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK  174 (386)
T ss_dssp             TTTSCCCC----SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred             HHhCCCCC----CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence            87765432    122 45666666666664  4589999999976 1    3344445443321 233456788887764


Q ss_pred             HHhhch----hcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          333 LLASLE----MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       333 v~~~~~----~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      ....+.    ..-....++     ++|+  +.++..+++.+.+
T Consensus       175 ~~~~~~~~~~~r~~~~~i~-----l~~l--~~~~~~~il~~~~  210 (386)
T 2qby_A          175 FVDLLDPRVKSSLSEEEII-----FPPY--NAEELEDILTKRA  210 (386)
T ss_dssp             GGGGCTTHHHHTTTTEEEE-----ECCC--CHHHHHHHHHHHH
T ss_pred             hHhhhCHHHhccCCCeeEE-----eCCC--CHHHHHHHHHHHH
Confidence            332221    001124788     9999  9999999998764

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.20  E-value=8.3e-11  Score=112.20  Aligned_cols=167  Identities=11%  Similarity=0.082  Sum_probs=109.1

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCC------CHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAY------DFGKMLDDI  260 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~i~~~i  260 (394)
                      .++||+.+++++.+++..+    +++.|+|++|+|||||++.+++.  .    . .+|+++....      +...++..+
T Consensus        13 ~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~~~~l   81 (350)
T 2qen_A           13 DIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREELIKEL   81 (350)
T ss_dssp             GSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHHHHHHH
Confidence            7999999999999988753    68899999999999999999873  2    1 6777765432      556666666


Q ss_pred             HHHhCCC------------C-CCccccCc-CHHHHHHHHHHHccC-CeEEEEEeCCCC-Cc-------hhHHHHHhhCCC
Q 016120          261 IKSVMPP------------S-RVSVIIGE-DYQLKKSILRDYLTN-KKYFIVLDDVFD-NS-------EIWSDLEELLPD  317 (394)
Q Consensus       261 ~~~l~~~------------~-~~~~~~~~-~~~~~~~~l~~~l~~-kr~LlVlDdv~~-~~-------~~~~~l~~~l~~  317 (394)
                      ...+...            . ......+. +...+...+.+.... ++++|||||++. +.       ..+..+......
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~  161 (350)
T 2qen_A           82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS  161 (350)
T ss_dssp             HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh
Confidence            6655420            0 00000112 566666777666643 389999999987 21       223333332221


Q ss_pred             CCCCcEEEEecCChHH-Hhh---chh----c-CCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          318 DENGSRVLITVTDPDL-LAS---LEM----E-NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       318 ~~~gs~IivTTR~~~v-~~~---~~~----~-~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                       .++.++|+|++...+ ...   ...    . .....++     +.||  +.+++.+++.+.++
T Consensus       162 -~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~-----l~pl--~~~e~~~~l~~~~~  217 (350)
T 2qen_A          162 -LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVL-----VKPF--DKDTSVEFLKRGFR  217 (350)
T ss_dssp             -CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred             -cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceee-----CCCC--CHHHHHHHHHHHHH
Confidence             246789999987654 221   000    0 1124677     9999  99999999987653

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.17  E-value=1.4e-10  Score=110.76  Aligned_cols=165  Identities=13%  Similarity=0.147  Sum_probs=102.6

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCC-----CCHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA-----YDFGKMLDDII  261 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~i~~~i~  261 (394)
                      .++||+.+++.|.+ +..     +++.|+|++|+|||+|++.+.+.  ...   ..+|+++...     .+....+..+.
T Consensus        14 ~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~   82 (357)
T 2fna_A           14 DFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLELQ   82 (357)
T ss_dssp             GSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred             HhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHHHH
Confidence            79999999999998 643     58999999999999999999873  322   2578877642     34444444444


Q ss_pred             HHhC--------------CCC----CC-cccc-----Cc-CHHHHHHHHHHHccCCeEEEEEeCCCC-C----chhHHHH
Q 016120          262 KSVM--------------PPS----RV-SVII-----GE-DYQLKKSILRDYLTNKKYFIVLDDVFD-N----SEIWSDL  311 (394)
Q Consensus       262 ~~l~--------------~~~----~~-~~~~-----~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-~----~~~~~~l  311 (394)
                      ..+.              .-.    +. ....     .. ....+...+.+..+ ++++|||||++. +    .+.+..+
T Consensus        83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l  161 (357)
T 2fna_A           83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL  161 (357)
T ss_dssp             HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred             HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence            4331              000    00 0000     12 45556655555433 499999999977 1    2223333


Q ss_pred             HhhCCCCCCCcEEEEecCChHH-Hhh---ch----hcC-CCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          312 EELLPDDENGSRVLITVTDPDL-LAS---LE----MEN-GEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       312 ~~~l~~~~~gs~IivTTR~~~v-~~~---~~----~~~-~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .... ....+.++|+|++.... ...   ..    ..+ ....++     +.||  +.+++.+++.+.+
T Consensus       162 ~~~~-~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~-----l~~l--~~~e~~~~l~~~~  222 (357)
T 2fna_A          162 AYAY-DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVE-----LKPF--SREEAIEFLRRGF  222 (357)
T ss_dssp             HHHH-HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEE-----ECCC--CHHHHHHHHHHHH
T ss_pred             HHHH-HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceee-----cCCC--CHHHHHHHHHHHH
Confidence            3222 22246789999998653 222   00    001 125677     9999  9999999998765

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.14  E-value=3.6e-10  Score=101.41  Aligned_cols=169  Identities=12%  Similarity=0.026  Sum_probs=98.5

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++||+..++.+..++.... ....+.|+|++|+||||||+.+++.  ....+....    ........ ...+......
T Consensus        24 ~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~----~~~~~~~~-~~~~~~~~~~   95 (250)
T 1njg_A           24 DVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITA----TPCGVCDN-CREIEQGRFV   95 (250)
T ss_dssp             GCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCS----SCCSCSHH-HHHHHTTCCS
T ss_pred             HHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCC----CCCcccHH-HHHHhccCCc
Confidence            89999999999999997653 2357889999999999999999873  222111000    00000000 0011100000


Q ss_pred             CCCCccccCc-CHHHHHHHHHHH----ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhhchh
Q 016120          267 PSRVSVIIGE-DYQLKKSILRDY----LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLASLEM  339 (394)
Q Consensus       267 ~~~~~~~~~~-~~~~~~~~l~~~----l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~  339 (394)
                      .......... ....+...+...    ..+++.+||+||++. +...++.+...+.....+..+|+||+... +...+  
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l--  173 (250)
T 1njg_A           96 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI--  173 (250)
T ss_dssp             SEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH--
T ss_pred             ceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHH--
Confidence            0000000000 122222222221    134679999999977 56677777777665566788888887653 22222  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ......++     ++++  +.++..+++.+.+.
T Consensus       174 ~~r~~~i~-----l~~l--~~~e~~~~l~~~~~  199 (250)
T 1njg_A          174 LSRCLQFH-----LKAL--DVEQIRHQLEHILN  199 (250)
T ss_dssp             HTTSEEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred             HHHhhhcc-----CCCC--CHHHHHHHHHHHHH
Confidence            12346788     9999  99999999988753

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.06  E-value=1.6e-09  Score=95.86  Aligned_cols=147  Identities=9%  Similarity=0.072  Sum_probs=96.6

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc-cC-eeEEEEeCCCCCHHHHHHHHHHHh
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY-FD-CLAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      +++|++..++.+.+++....  .+.+.|+|++|+|||++|+.+++  ..... +. ..+.++.+.......+        
T Consensus        18 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------   85 (226)
T 2chg_A           18 EVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVV--------   85 (226)
T ss_dssp             GCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHH--------
T ss_pred             HHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHH--------
Confidence            89999999999999997653  23388999999999999999987  33222 22 2233443333222222        


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHc------cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhh
Q 016120          265 MPPSRVSVIIGEDYQLKKSILRDYL------TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLAS  336 (394)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~  336 (394)
                                       ...+....      .+++.+||+||++. ....++.+...+.....++++|+||+... +...
T Consensus        86 -----------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~  148 (226)
T 2chg_A           86 -----------------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP  148 (226)
T ss_dssp             -----------------HHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred             -----------------HHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHH
Confidence                             22222221      25789999999988 44556666665554456778888887653 1111


Q ss_pred             chhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          337 LEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       337 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      +  ......++     +.++  +.++...++.+.+
T Consensus       149 l--~~r~~~i~-----~~~~--~~~~~~~~l~~~~  174 (226)
T 2chg_A          149 I--QSRCAVFR-----FKPV--PKEAMKKRLLEIC  174 (226)
T ss_dssp             H--HTTSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred             H--HHhCceee-----cCCC--CHHHHHHHHHHHH
Confidence            1  12234788     9999  9999999998875

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.88  E-value=4.5e-09  Score=99.06  Aligned_cols=153  Identities=14%  Similarity=0.137  Sum_probs=95.4

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc-ccC-eeEEEEeCCCCCHHHHHHHHHHHh
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF-YFD-CLAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      +++|++..++.+.+++..+.  .+.+.++|++|+|||++|+.+++.  ... .+. ..++++.+....... ..+++..+
T Consensus        22 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~   96 (323)
T 1sxj_B           22 DIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGIDV-VRNQIKHF   96 (323)
T ss_dssp             GCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHHH-HHTHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChHH-HHHHHHHH
Confidence            89999999999999987653  223889999999999999999873  211 111 233444333222211 11111111


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhhchhcC
Q 016120          265 MPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLASLEMEN  341 (394)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~~~  341 (394)
                      ...                  ...+ .+++.++|+||++. +...++.+...+.....++++|+||.... +...+  .+
T Consensus        97 ~~~------------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l--~s  156 (323)
T 1sxj_B           97 AQK------------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPL--QS  156 (323)
T ss_dssp             HHB------------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHH--HT
T ss_pred             Hhc------------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHH--Hh
Confidence            100                  0011 34689999999987 44555555555544455678888887642 22222  12


Q ss_pred             CCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          342 GEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       342 ~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      ....++     +.++  +.++...++.+.+
T Consensus       157 r~~~i~-----~~~~--~~~~~~~~l~~~~  179 (323)
T 1sxj_B          157 QCAILR-----YSKL--SDEDVLKRLLQII  179 (323)
T ss_dssp             TSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred             hceEEe-----ecCC--CHHHHHHHHHHHH
Confidence            345788     9999  9999999998764

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.70  E-value=1.9e-08  Score=94.88  Aligned_cols=151  Identities=13%  Similarity=0.062  Sum_probs=94.7

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc-c-CeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY-F-DCLAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F-~~~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      +++|++..++.+.+++..+.  .+.+.++|++|+||||+|+.+++.  .... + ...+.++.+......          
T Consensus        26 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~----------   91 (327)
T 1iqp_A           26 DIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGIN----------   91 (327)
T ss_dssp             TCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHHH----------
T ss_pred             HhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCchH----------
Confidence            89999999999999887653  334889999999999999999873  2211 1 112333322210000          


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHH--c-cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhhchh
Q 016120          265 MPPSRVSVIIGEDYQLKKSILRDY--L-TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLASLEM  339 (394)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~  339 (394)
                                  ............  + .+++.++|+|+++. +...++.+...+.....++++|+||.... +...+  
T Consensus        92 ------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l--  157 (327)
T 1iqp_A           92 ------------VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI--  157 (327)
T ss_dssp             ------------TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH--
T ss_pred             ------------HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHH--
Confidence                        001111111111  1 25788999999987 45666777666655456788888887653 11111  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ......++     +.|+  +.++...++.+.+.
T Consensus       158 ~sr~~~~~-----~~~l--~~~~~~~~l~~~~~  183 (327)
T 1iqp_A          158 QSRCAIFR-----FRPL--RDEDIAKRLRYIAE  183 (327)
T ss_dssp             HHTEEEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred             HhhCcEEE-----ecCC--CHHHHHHHHHHHHH
Confidence            11234778     9999  99999999887643

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.67  E-value=3.4e-07  Score=86.32  Aligned_cols=174  Identities=7%  Similarity=-0.029  Sum_probs=104.8

Q ss_pred             ccceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhcCccccc---ccC--eeEEEEeCCCCCHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYNNDHVKF---YFD--CLAWVRVSIAYDFGKMLDD  259 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---~F~--~~~wv~vs~~~~~~~i~~~  259 (394)
                      .+.||+++.++|...|...  +...+.+-|+|++|+|||++++.+++......   ...  ..+.++.....+...++..
T Consensus        21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~  100 (318)
T 3te6_A           21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK  100 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence            3789999999999888653  34567788999999999999999998422111   111  3467777777788899999


Q ss_pred             HHHHhCCCCCCccccCcCHHHHHHHHHHH--ccCCeEEEEEeCCCCCchhHHHHHhhCC----CCCCCcEEEEecCChH-
Q 016120          260 IIKSVMPPSRVSVIIGEDYQLKKSILRDY--LTNKKYFIVLDDVFDNSEIWSDLEELLP----DDENGSRVLITVTDPD-  332 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~l~~~l~----~~~~gs~IivTTR~~~-  332 (394)
                      |++++.+...   ........+...+...  -.+++++++||++.. ...-+-+...+.    ...+. .||.++...+ 
T Consensus       101 I~~~L~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~-l~~q~~L~~l~~~~~~~~s~~-~vI~i~n~~d~  175 (318)
T 3te6_A          101 IWFAISKENL---CGDISLEALNFYITNVPKAKKRKTLILIQNPEN-LLSEKILQYFEKWISSKNSKL-SIICVGGHNVT  175 (318)
T ss_dssp             HHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSS-SCCTHHHHHHHHHHHCSSCCE-EEEEECCSSCC
T ss_pred             HHHHhcCCCC---CchHHHHHHHHHHHHhhhccCCceEEEEecHHH-hhcchHHHHHHhcccccCCcE-EEEEEecCccc
Confidence            9999976532   0111344444444432  245789999999987 212222222221    11222 2333343321 


Q ss_pred             ----HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          333 ----LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       333 ----v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                          +.....+.-....+.     ++|.  +.++-.+++.+++.
T Consensus       176 ~~~~L~~~v~SR~~~~~i~-----F~pY--t~~el~~Il~~Rl~  212 (318)
T 3te6_A          176 IREQINIMPSLKAHFTEIK-----LNKV--DKNELQQMIITRLK  212 (318)
T ss_dssp             CHHHHHTCHHHHTTEEEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred             chhhcchhhhccCCceEEE-----eCCC--CHHHHHHHHHHHHH
Confidence                111110001225688     9999  99999999988743

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.62  E-value=4.4e-08  Score=84.39  Aligned_cols=44  Identities=9%  Similarity=0.089  Sum_probs=38.0

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +++||+..++++.+.+....  ...+.|+|++|+|||+||+.+++.
T Consensus        23 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           23 PVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence            79999999999999987642  456789999999999999999873

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.50  E-value=1e-06  Score=84.58  Aligned_cols=168  Identities=12%  Similarity=-0.006  Sum_probs=94.7

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|++..++.+.+.+..+. ....+.|+|++|+||||+|+.+.+.......+.       ...+........+......
T Consensus        17 ~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~   88 (373)
T 1jr3_A           17 DVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQGRFV   88 (373)
T ss_dssp             TSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTSCCS
T ss_pred             hccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhccCCC
Confidence            89999999999999987643 234678999999999999999976321111100       0000000000111100000


Q ss_pred             CCCC---ccccCc-CHHHHHHHHHHH-ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhhchh
Q 016120          267 PSRV---SVIIGE-DYQLKKSILRDY-LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLASLEM  339 (394)
Q Consensus       267 ~~~~---~~~~~~-~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~  339 (394)
                      ....   ...... +...+...+... ..+++.++|+||+.. +...++.+...+.....+..+|++|.... +...+  
T Consensus        89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l--  166 (373)
T 1jr3_A           89 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI--  166 (373)
T ss_dssp             SCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH--
T ss_pred             ceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH--
Confidence            0000   000011 233332222211 135678999999987 55666777766655455667777776542 22222  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .+....++     +.++  +.++...++.+.+
T Consensus       167 ~sr~~~i~-----~~~l--~~~~~~~~l~~~~  191 (373)
T 1jr3_A          167 LSRCLQFH-----LKAL--DVEQIRHQLEHIL  191 (373)
T ss_dssp             HTTSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred             HhheeEee-----CCCC--CHHHHHHHHHHHH
Confidence            12346788     9999  9999999888764

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.49  E-value=4.1e-07  Score=85.31  Aligned_cols=151  Identities=9%  Similarity=0.047  Sum_probs=94.4

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc-ccccC-eeEEEEeCCCCCHHHHHHHHHHHh
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV-KFYFD-CLAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      +++|++..++.+.+++..+.  .+.+.++|++|+|||++|+.+++.  . ...+. ..+.++.+.....           
T Consensus        18 ~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~-----------   82 (319)
T 2chq_A           18 EVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGI-----------   82 (319)
T ss_dssp             GSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEETTSTTCT-----------
T ss_pred             HHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEeCccccCh-----------
Confidence            89999999999888886643  333789999999999999999873  2 11111 1223333321110           


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHH--c-cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhhchh
Q 016120          265 MPPSRVSVIIGEDYQLKKSILRDY--L-TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLASLEM  339 (394)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~  339 (394)
                                + ............  + .+++.++|+|++.. +....+.+...+.....++++|+||.... +...+  
T Consensus        83 ----------~-~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l--  149 (319)
T 2chq_A           83 ----------D-VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI--  149 (319)
T ss_dssp             ----------T-TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHH--
T ss_pred             ----------H-HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHH--
Confidence                      0 111111111111  1 25688999999987 45556667777665556778888876643 22222  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ......++     +.++  +.++...++.+.+.
T Consensus       150 ~sr~~~i~-----~~~~--~~~~~~~~l~~~~~  175 (319)
T 2chq_A          150 QSRCAVFR-----FKPV--PKEAMKKRLLEICE  175 (319)
T ss_dssp             HTTCEEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred             HhhCeEEE-----ecCC--CHHHHHHHHHHHHH
Confidence            12345788     9999  99999998887653

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.48  E-value=4.9e-07  Score=83.78  Aligned_cols=157  Identities=17%  Similarity=0.183  Sum_probs=89.2

Q ss_pred             ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      +++|.+..++++.+.+...           -.....+.|+|++|+|||+||+.+++  .....|   +.+..+.-     
T Consensus        18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~--~~~~~~---~~v~~~~~-----   87 (285)
T 3h4m_A           18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT--ETNATF---IRVVGSEL-----   87 (285)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH--HTTCEE---EEEEGGGG-----
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehHHH-----
Confidence            8999999999998887431           12345678999999999999999988  332222   22222111     


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C-----------ch---hHHHHHhhCC--CC
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N-----------SE---IWSDLEELLP--DD  318 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~-----------~~---~~~~l~~~l~--~~  318 (394)
                               ....     .......+...+......++.+|+||++.. .           ..   .+..+...+.  ..
T Consensus        88 ---------~~~~-----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~  153 (285)
T 3h4m_A           88 ---------VKKF-----IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA  153 (285)
T ss_dssp             ---------CCCS-----TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred             ---------HHhc-----cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence                     0000     010222223333333345678999999964 0           11   1222222221  22


Q ss_pred             CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCC
Q 016120          319 ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSM  374 (394)
Q Consensus       319 ~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~  374 (394)
                      ..+..||.||..+......-..  .-...+.     +++.  +.++..++|...+...
T Consensus       154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~-----~~~p--~~~~r~~il~~~~~~~  204 (285)
T 3h4m_A          154 RGDVKIIGATNRPDILDPAILRPGRFDRIIE-----VPAP--DEKGRLEILKIHTRKM  204 (285)
T ss_dssp             SSSEEEEEECSCGGGBCHHHHSTTSEEEEEE-----CCCC--CHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEeCCCchhcCHHHcCCCcCCeEEE-----ECCC--CHHHHHHHHHHHHhcC
Confidence            3356677788765321110000  1234677     9999  9999999998876543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.35  E-value=1.7e-06  Score=81.06  Aligned_cols=158  Identities=10%  Similarity=0.041  Sum_probs=88.0

Q ss_pred             ccceecccHHHHHHHHhcC-------------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCH
Q 016120          187 DINEFERGREELFDLLIEG-------------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDF  253 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~  253 (394)
                      +++|.+..++.+.+.+...             ......+.|+|++|+|||++|+.+++...........-++.++..   
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~---  108 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD---  108 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence            5889988888887665421             234456889999999999999988763111111111123333210   


Q ss_pred             HHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC----------CchhHHHHHhhCCCCCCCcE
Q 016120          254 GKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD----------NSEIWSDLEELLPDDENGSR  323 (394)
Q Consensus       254 ~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~----------~~~~~~~l~~~l~~~~~gs~  323 (394)
                               .+....     ...........+...   +..+|+||++..          +......+...+.....+..
T Consensus       109 ---------~l~~~~-----~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~  171 (309)
T 3syl_A          109 ---------DLVGQY-----IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV  171 (309)
T ss_dssp             ---------GTCCSS-----TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred             ---------Hhhhhc-----ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence                     111100     011222222222222   345999999983          13444555555544455667


Q ss_pred             EEEecCChHHHhh------chhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          324 VLITVTDPDLLAS------LEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       324 IivTTR~~~v~~~------~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ||.||........      +. ......++     ++++  +.++-..++.+.+.
T Consensus       172 ~i~~~~~~~~~~~~~~~~~l~-~R~~~~i~-----~~~~--~~~~~~~il~~~l~  218 (309)
T 3syl_A          172 VILAGYADRMENFFQSNPGFR-SRIAHHIE-----FPDY--SDEELFEIAGHMLD  218 (309)
T ss_dssp             EEEEECHHHHHHHHHHSTTHH-HHEEEEEE-----ECCC--CHHHHHHHHHHHHH
T ss_pred             EEEeCChHHHHHHHhhCHHHH-HhCCeEEE-----cCCc--CHHHHHHHHHHHHH
Confidence            7888764322111      10 01136777     9999  99999999987743

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.30  E-value=1.7e-06  Score=71.88  Aligned_cols=113  Identities=9%  Similarity=-0.106  Sum_probs=65.7

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|+...+.++.+.+..-.....-|.|+|.+|+|||++|+.+++.... ..... + ++.+...+.             
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~~-v-~~~~~~~~~-------------   65 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGEF-V-YRELTPDNA-------------   65 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSCC-E-EEECCTTTS-------------
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCCE-E-EECCCCCcc-------------
Confidence            4789999999998887542222334679999999999999999874211 11122 3 544432211             


Q ss_pred             CCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC
Q 016120          267 PSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD  330 (394)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~  330 (394)
                        .       .....   +...   +.-.|+||++.. +......+...+.......+||.||..
T Consensus        66 --~-------~~~~~---~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~  115 (145)
T 3n70_A           66 --P-------QLNDF---IALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT  115 (145)
T ss_dssp             --S-------CHHHH---HHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred             --h-------hhhcH---HHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence              0       11111   1111   234789999988 555556666655444445567776654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.27  E-value=2.7e-06  Score=84.11  Aligned_cols=153  Identities=13%  Similarity=0.136  Sum_probs=88.0

Q ss_pred             ccc-eeccc--HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccC--eeEEEEeCCCCCHHHHHHHHH
Q 016120          187 DIN-EFERG--REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFD--CLAWVRVSIAYDFGKMLDDII  261 (394)
Q Consensus       187 ~~~-Gr~~~--~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~i~~~i~  261 (394)
                      +|+ |....  ...+......... ...+.|+|++|+||||||+.+++  .....+.  ..++++.      ..+..++.
T Consensus       106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~------~~~~~~~~  176 (440)
T 2z4s_A          106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLV  176 (440)
T ss_dssp             GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEH------HHHHHHHH
T ss_pred             hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHH
Confidence            565 64332  2333333333222 56788999999999999999998  4443332  2345543      23344444


Q ss_pred             HHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cc--hhHHHHHhhCCC-CCCCcEEEEecCCh------
Q 016120          262 KSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NS--EIWSDLEELLPD-DENGSRVLITVTDP------  331 (394)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~--~~~~~l~~~l~~-~~~gs~IivTTR~~------  331 (394)
                      ..+...         ...    .+...+..+.-+|+|||++. ..  ...+.+...+.. ...|..||+||.++      
T Consensus       177 ~~~~~~---------~~~----~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~  243 (440)
T 2z4s_A          177 DSMKEG---------KLN----EFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE  243 (440)
T ss_dssp             HHHHTT---------CHH----HHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred             HHHHcc---------cHH----HHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence            444322         111    22333333677999999976 22  233334333321 13467788888763      


Q ss_pred             ---HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          332 ---DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       332 ---~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                         .+...+   ....++.     ++++  +.++...++.+.+
T Consensus       244 l~~~L~sR~---~~g~~i~-----l~~p--~~e~r~~iL~~~~  276 (440)
T 2z4s_A          244 FQDRLVSRF---QMGLVAK-----LEPP--DEETRKSIARKML  276 (440)
T ss_dssp             CCHHHHHHH---HSSBCCB-----CCCC--CHHHHHHHHHHHH
T ss_pred             HHHHHHhhc---cCCeEEE-----eCCC--CHHHHHHHHHHHH
Confidence               222222   2235677     9999  9999999998875

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.27  E-value=1.1e-05  Score=73.45  Aligned_cols=153  Identities=12%  Similarity=0.114  Sum_probs=84.2

Q ss_pred             ccceecccHHHHHHHHh---cCC-------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120          187 DINEFERGREELFDLLI---EGP-------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  256 (394)
                      +++|.+..++++.+.+.   ..+       ...+.+.|+|++|+|||++|+.+++  +...+   .+.++.+.-.+    
T Consensus         7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~--~~~~~---~~~~~~~~~~~----   77 (262)
T 2qz4_A            7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVP---FLAMAGAEFVE----   77 (262)
T ss_dssp             SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH--HHTCC---EEEEETTTTSS----
T ss_pred             HhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEechHHHHh----
Confidence            78998887777765542   211       2345677999999999999999988  33322   23333332111    


Q ss_pred             HHHHHHHhCCCCCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCCCc-----------------hhHHHHHhhCCC-
Q 016120          257 LDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFDNS-----------------EIWSDLEELLPD-  317 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------------~~~~~l~~~l~~-  317 (394)
                                .      +.. ....+...+.......+.+|+||++.. .                 .....+...+.. 
T Consensus        78 ----------~------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~-l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~  140 (262)
T 2qz4_A           78 ----------V------IGGLGAARVRSLFKEARARAPCIVYIDEIDA-VGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM  140 (262)
T ss_dssp             ----------S------STTHHHHHHHHHHHHHHHTCSEEEEEECC--------------------CHHHHHHHHHHHTC
T ss_pred             ----------h------ccChhHHHHHHHHHHHHhcCCeEEEEeCcch-hhccccccccCccchhHHHHHHHHHHHhhCc
Confidence                      0      011 222333333333345679999999986 1                 112223222221 


Q ss_pred             -CCCCcEEEEecCChHHH-hhchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          318 -DENGSRVLITVTDPDLL-ASLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       318 -~~~gs~IivTTR~~~v~-~~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                       ...+..||.||..+... ...-. ..-...+.     +++.  +.++-.+++...+.
T Consensus       141 ~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~-----i~~p--~~~~r~~il~~~~~  191 (262)
T 2qz4_A          141 GTTDHVIVLASTNRADILDGALMRPGRLDRHVF-----IDLP--TLQERREIFEQHLK  191 (262)
T ss_dssp             CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEE-----CCSC--CHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEE-----eCCc--CHHHHHHHHHHHHH
Confidence             22345666677654321 11100 01235667     8899  99999999887643

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.25  E-value=6.7e-07  Score=80.13  Aligned_cols=142  Identities=10%  Similarity=0.045  Sum_probs=79.0

Q ss_pred             ccceec---ccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          187 DINEFE---RGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       187 ~~~Gr~---~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      +++|.+   ..++.+..++...  ....+.|+|++|+||||||+.+++  ..........|++.+.-...          
T Consensus        29 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~~----------   94 (242)
T 3bos_A           29 SYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPLGIHASI----------   94 (242)
T ss_dssp             TSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEGGGGGGS----------
T ss_pred             hccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEHHHHHHH----------
Confidence            677633   4445555554432  356788999999999999999987  33333334566655331100          


Q ss_pred             hCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cchh--HHHHHhhCCCC-CCC-cEEEEecCChH------
Q 016120          264 VMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEI--WSDLEELLPDD-ENG-SRVLITVTDPD------  332 (394)
Q Consensus       264 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~--~~~l~~~l~~~-~~g-s~IivTTR~~~------  332 (394)
                                .....        +.+ .++.+||+||++. ....  .+.+...+... ..+ .++|+||+...      
T Consensus        95 ----------~~~~~--------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~  155 (242)
T 3bos_A           95 ----------STALL--------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV  155 (242)
T ss_dssp             ----------CGGGG--------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC
T ss_pred             ----------HHHHH--------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh
Confidence                      00000        001 3467899999987 2222  23333322111 122 24777776321      


Q ss_pred             ---HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          333 ---LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       333 ---v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                         +...+   ....+++     ++++  +.++..+++.+.+
T Consensus       156 ~~~l~~r~---~~~~~i~-----l~~~--~~~~~~~~l~~~~  187 (242)
T 3bos_A          156 LPDLVSRM---HWGLTYQ-----LQPM--MDDEKLAALQRRA  187 (242)
T ss_dssp             CHHHHHHH---HHSEEEE-----CCCC--CGGGHHHHHHHHH
T ss_pred             hhhhhhHh---hcCceEE-----eCCC--CHHHHHHHHHHHH
Confidence               11111   1126788     9999  9999999998875

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.25  E-value=5.2e-06  Score=79.23  Aligned_cols=165  Identities=10%  Similarity=0.050  Sum_probs=87.7

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC---ccccc-ccCe--------------------e
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN---DHVKF-YFDC--------------------L  242 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~---~~~~~-~F~~--------------------~  242 (394)
                      +++|.+...+.+.+++...+.... +.|+|+.|+||||+|+.+...   +.... .++.                    .
T Consensus        15 ~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~   93 (354)
T 1sxj_E           15 ALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH   93 (354)
T ss_dssp             GCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred             HhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence            889999888888887723222233 889999999999999988762   11000 0010                    1


Q ss_pred             EEEEeCCCC-CHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCC
Q 016120          243 AWVRVSIAY-DFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDEN  320 (394)
Q Consensus       243 ~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~  320 (394)
                      +.+..+... .......+++..+.....        ..... .+.. +.+++-++|||++.. +....+.+...+.....
T Consensus        94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~  163 (354)
T 1sxj_E           94 LEITPSDMGNNDRIVIQELLKEVAQMEQ--------VDFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKYSK  163 (354)
T ss_dssp             EEECCC----CCHHHHHHHHHHHTTTTC----------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred             EEecHhhcCCcchHHHHHHHHHHHHhcc--------ccccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhhcC
Confidence            111111100 000012222222211110        00000 0000 233667999999988 55555556555543344


Q ss_pred             CcEEEEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          321 GSRVLITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       321 gs~IivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      ++.+|++|.+. .+...+  .+....++     +.++  +.++....+.+.+
T Consensus       164 ~~~~Il~t~~~~~l~~~l--~sR~~~~~-----~~~~--~~~~~~~~l~~~~  206 (354)
T 1sxj_E          164 NIRLIMVCDSMSPIIAPI--KSQCLLIR-----CPAP--SDSEISTILSDVV  206 (354)
T ss_dssp             TEEEEEEESCSCSSCHHH--HTTSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHH--HhhceEEe-----cCCc--CHHHHHHHHHHHH
Confidence            67777777653 232222  13346788     9999  9999999888764

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.24  E-value=3.7e-06  Score=79.40  Aligned_cols=138  Identities=14%  Similarity=0.169  Sum_probs=85.0

Q ss_pred             CcccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120          185 RLDINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       185 ~~~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      +.+++|.+..+..+.+++..+. ...++.+.|++|+|||++|+.+.+  ....   ..+.++.+.. ...          
T Consensus        25 ~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~--~l~~---~~~~i~~~~~-~~~----------   87 (324)
T 3u61_B           25 IDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH--DVNA---DMMFVNGSDC-KID----------   87 (324)
T ss_dssp             TTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH--HTTE---EEEEEETTTC-CHH----------
T ss_pred             HHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhCC---CEEEEccccc-CHH----------
Confidence            3389999999999999998643 345677888899999999999987  3321   2344443331 111          


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHc-----cCCeEEEEEeCCCC-C-chhHHHHHhhCCCCCCCcEEEEecCChH-HHhh
Q 016120          265 MPPSRVSVIIGEDYQLKKSILRDYL-----TNKKYFIVLDDVFD-N-SEIWSDLEELLPDDENGSRVLITVTDPD-LLAS  336 (394)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~-~-~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~  336 (394)
                                     .+...+.+..     .+++.+|++|++.. . ....+.+...+.....+.++|+||.... +...
T Consensus        88 ---------------~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~  152 (324)
T 3u61_B           88 ---------------FVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKP  152 (324)
T ss_dssp             ---------------HHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTT
T ss_pred             ---------------HHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHH
Confidence                           1111122211     24788999999998 4 4455555554433334567888777643 1111


Q ss_pred             chhcCCCceeeCCccCCCCCCCChHHH
Q 016120          337 LEMENGEKIRRDSVLFGGPLIRLKHEA  363 (394)
Q Consensus       337 ~~~~~~~~~~~~~~~~l~~L~~~~~~~  363 (394)
                      +  .+...+++     ++++  +.++-
T Consensus       153 l--~sR~~~i~-----~~~~--~~~e~  170 (324)
T 3u61_B          153 L--QSRCRVIT-----FGQP--TDEDK  170 (324)
T ss_dssp             H--HHHSEEEE-----CCCC--CHHHH
T ss_pred             H--HhhCcEEE-----eCCC--CHHHH
Confidence            1  11224678     9999  87774

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.24  E-value=1.6e-06  Score=74.17  Aligned_cols=43  Identities=12%  Similarity=0.062  Sum_probs=37.4

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|++..++.+.+.+...  ....+.|+|++|+|||+||+.+++
T Consensus        23 ~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           23 PVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             CCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHH
Confidence            7999999999999998764  245568999999999999999987

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=98.22  E-value=2.9e-06  Score=79.93  Aligned_cols=147  Identities=14%  Similarity=0.045  Sum_probs=85.6

Q ss_pred             ccceecccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      +++|++..+..+..++...   ......+.|+|++|+|||++|+.+++  .....   .++++.+....           
T Consensus        13 ~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~--~~~~~---~~~~~~~~~~~-----------   76 (324)
T 1hqc_A           13 EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH--ELGVN---LRVTSGPAIEK-----------   76 (324)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH--HHTCC---EEEECTTTCCS-----------
T ss_pred             HhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH--HhCCC---EEEEeccccCC-----------
Confidence            8999999988888877531   12345678999999999999999987  33222   23443322211           


Q ss_pred             hCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCC------------------CCCcEE
Q 016120          264 VMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDD------------------ENGSRV  324 (394)
Q Consensus       264 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~------------------~~gs~I  324 (394)
                                    ...+...+...+ .+..+|+||++.. .......+...+...                  .++..+
T Consensus        77 --------------~~~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~  141 (324)
T 1hqc_A           77 --------------PGDLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL  141 (324)
T ss_dssp             --------------HHHHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred             --------------hHHHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence                          111211111111 2456899999987 344444444333211                  023456


Q ss_pred             EEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          325 LITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       325 ivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      |.||... .+...+. .....++.     +.++  +.++...++.+.+.
T Consensus       142 i~~t~~~~~~~~~l~-~R~~~~i~-----l~~~--~~~e~~~~l~~~~~  182 (324)
T 1hqc_A          142 IGATTRPGLITAPLL-SRFGIVEH-----LEYY--TPEELAQGVMRDAR  182 (324)
T ss_dssp             EEEESCCSSCSCSTT-TTCSCEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred             EEeCCCcccCCHHHH-hcccEEEe-----cCCC--CHHHHHHHHHHHHH
Confidence            6665543 2222220 11135677     9999  99999998887753

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.21  E-value=5.3e-06  Score=82.08  Aligned_cols=145  Identities=13%  Similarity=0.073  Sum_probs=84.9

Q ss_pred             ccceecccH---HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCC-CCHHHHHHHHHH
Q 016120          187 DINEFERGR---EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA-YDFGKMLDDIIK  262 (394)
Q Consensus       187 ~~~Gr~~~~---~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~i~~~i~~  262 (394)
                      +++|.+..+   ..+...+....  ...+.|+|++|+||||||+.+.+  .....|     +.++.. .....       
T Consensus        27 ~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~--~~~~~f-----~~l~a~~~~~~~-------   90 (447)
T 3pvs_A           27 QYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIAR--YANADV-----ERISAVTSGVKE-------   90 (447)
T ss_dssp             TCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHH--HTTCEE-----EEEETTTCCHHH-------
T ss_pred             HhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHH--HhCCCe-----EEEEeccCCHHH-------
Confidence            889988877   67777776653  46788999999999999999998  333322     222211 11111       


Q ss_pred             HhCCCCCCccccCcCHHHHHHHHHH-HccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH--HHhhch
Q 016120          263 SVMPPSRVSVIIGEDYQLKKSILRD-YLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD--LLASLE  338 (394)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~--v~~~~~  338 (394)
                                     .......... ...+++.+|+||++.. +....+.+...+..+. -.-|..||.++.  +...+ 
T Consensus        91 ---------------ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~-v~lI~att~n~~~~l~~aL-  153 (447)
T 3pvs_A           91 ---------------IREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT-ITFIGATTENPSFELNSAL-  153 (447)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTS-CEEEEEESSCGGGSSCHHH-
T ss_pred             ---------------HHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc-eEEEecCCCCcccccCHHH-
Confidence                           1111111111 1246789999999988 4444444444443311 222333666653  22222 


Q ss_pred             hcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          339 MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       339 ~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                       .+...++.     ++++  +.++...++.+.+.
T Consensus       154 -~sR~~v~~-----l~~l--~~edi~~il~~~l~  179 (447)
T 3pvs_A          154 -LSRARVYL-----LKSL--STEDIEQVLTQAME  179 (447)
T ss_dssp             -HTTEEEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred             -hCceeEEe-----eCCc--CHHHHHHHHHHHHH
Confidence             13456888     9999  99999999988753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.19  E-value=8.4e-06  Score=77.04  Aligned_cols=156  Identities=18%  Similarity=0.158  Sum_probs=88.5

Q ss_pred             ccceecccHHHHHHHHhc----------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120          187 DINEFERGREELFDLLIE----------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  256 (394)
                      +++|.+..++.|.+.+..          .....+-+.++|++|+|||+||+.+++  +...+|   +.++.      .. 
T Consensus        19 di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~~---~~v~~------~~-   86 (322)
T 3eie_A           19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSS------SD-   86 (322)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH--HHTCEE---EEEEH------HH-
T ss_pred             HhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH--HHCCCE---EEEch------HH-
Confidence            899999999999887731          112345688999999999999999988  333322   22222      11 


Q ss_pred             HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cc-----------hhHHHHHhhCC---CCCCC
Q 016120          257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NS-----------EIWSDLEELLP---DDENG  321 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~-----------~~~~~l~~~l~---~~~~g  321 (394)
                         +...   .      .......+...+...-..++.+|+||++.. ..           .....+...+.   ....+
T Consensus        87 ---l~~~---~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~  154 (322)
T 3eie_A           87 ---LVSK---W------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG  154 (322)
T ss_dssp             ---HHTT---T------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred             ---Hhhc---c------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence               1110   0      011222222222223345778999999975 11           11233332222   23345


Q ss_pred             cEEEEecCChHH-HhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCC
Q 016120          322 SRVLITVTDPDL-LASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSM  374 (394)
Q Consensus       322 s~IivTTR~~~v-~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~  374 (394)
                      ..||.||..+.. -..+. ..-...+.     +++.  +.++-..+|...+...
T Consensus       155 v~vi~atn~~~~ld~al~-~Rf~~~i~-----~~~p--~~~~r~~il~~~~~~~  200 (322)
T 3eie_A          155 VLVLGATNIPWQLDSAIR-RRFERRIY-----IPLP--DLAARTTMFEINVGDT  200 (322)
T ss_dssp             EEEEEEESCGGGSCHHHH-HHCCEEEE-----CCCC--CHHHHHHHHHHHHTTC
T ss_pred             eEEEEecCChhhCCHHHH-cccCeEEE-----eCCC--CHHHHHHHHHHHhccC
Confidence            566667765422 11110 11245667     8888  9999999998887643

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.16  E-value=1.8e-05  Score=74.05  Aligned_cols=157  Identities=11%  Similarity=0.096  Sum_probs=89.6

Q ss_pred             ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      +++|.+..++++.+.+...           -.....+.|+|++|+|||+||+.+++  .....|     +.+    +...
T Consensus        16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~--~~~~~~-----i~v----~~~~   84 (301)
T 3cf0_A           16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISI----KGPE   84 (301)
T ss_dssp             GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH--HTTCEE-----EEE----CHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH--HhCCCE-----EEE----EhHH
Confidence            7999998888888776431           12345788999999999999999998  333222     222    1223


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C--------------chhHHHHHhhCCC--C
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N--------------SEIWSDLEELLPD--D  318 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~--------------~~~~~~l~~~l~~--~  318 (394)
                      +....   .+..          ...+...+.......+.+|+||++.. .              ......+...+..  .
T Consensus        85 l~~~~---~g~~----------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~  151 (301)
T 3cf0_A           85 LLTMW---FGES----------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST  151 (301)
T ss_dssp             HHHHH---HTTC----------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred             HHhhh---cCch----------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence            32222   1211          11222333333345689999999974 0              0012333333221  2


Q ss_pred             CCCcEEEEecCChHHH-hhchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCC
Q 016120          319 ENGSRVLITVTDPDLL-ASLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSM  374 (394)
Q Consensus       319 ~~gs~IivTTR~~~v~-~~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~  374 (394)
                      ..+..||.||..++.. ..+-. ..-...+.     +++.  +.++-.+++...+...
T Consensus       152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~-----i~~p--~~~~r~~il~~~l~~~  202 (301)
T 3cf0_A          152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIY-----IPLP--DEKSRVAILKANLRKS  202 (301)
T ss_dssp             TSSEEEEEEESCGGGSCGGGGSTTSSCEEEE-----CCCC--CHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEecCCccccChHHhcCCccceEEe-----cCCc--CHHHHHHHHHHHHccC
Confidence            2345677777665322 21100 01235677     8888  8888888888776543

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.15  E-value=2.5e-05  Score=74.82  Aligned_cols=46  Identities=17%  Similarity=0.197  Sum_probs=35.9

Q ss_pred             ccceecccHHH---HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          187 DINEFERGREE---LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       187 ~~~Gr~~~~~~---i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +++|++..++.   +.+.+.......+.+.|+|++|+|||++|+.+.+.
T Consensus        45 ~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           45 GMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            89999988666   45555554433467889999999999999999883

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.15  E-value=3.3e-06  Score=80.42  Aligned_cols=164  Identities=12%  Similarity=0.030  Sum_probs=92.5

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccC-eeEEEEeCCCCCHHHHHHHHHHHhC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFD-CLAWVRVSIAYDFGKMLDDIIKSVM  265 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~~~l~  265 (394)
                      +++|++..++.+..++....  .+.+.++|++|+||||+|+.+.+.......+. ..+.++.+.......+ .+.+....
T Consensus        38 ~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  114 (353)
T 1sxj_D           38 EVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVKNFA  114 (353)
T ss_dssp             TCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHHHHH
T ss_pred             HhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHHHHh
Confidence            89999999999999987653  22378999999999999999987311111121 1233343332222222 11111111


Q ss_pred             CCCCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhhchhcCC
Q 016120          266 PPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLASLEMENG  342 (394)
Q Consensus       266 ~~~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~~~~~  342 (394)
                      ....    ... ..     .....-.+++-+|++|++.. +......+...+.......++|++|.... +...+.  ..
T Consensus       115 ~~~~----~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~--sR  183 (353)
T 1sxj_D          115 RLTV----SKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA--SQ  183 (353)
T ss_dssp             HSCC----CCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH--HH
T ss_pred             hhcc----cccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh--cc
Confidence            0000    000 00     00011123567999999877 44455556555544445567777765442 222221  12


Q ss_pred             CceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          343 EKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       343 ~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      ...++     +.++  +.++....+.+.+
T Consensus       184 ~~~i~-----~~~~--~~~~~~~~l~~~~  205 (353)
T 1sxj_D          184 CSKFR-----FKAL--DASNAIDRLRFIS  205 (353)
T ss_dssp             SEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred             CceEE-----eCCC--CHHHHHHHHHHHH
Confidence            34777     9999  9999998888765

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.14  E-value=3.2e-05  Score=73.06  Aligned_cols=155  Identities=20%  Similarity=0.186  Sum_probs=86.1

Q ss_pred             ccceecccHHHHHHHHhc---------C-CCCceEEEEEcCCCccHHHHHHHHhcCccc-ccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIE---------G-PSGLAVVAILDSSGFDKTVFTADTYNNDHV-KFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|.+..++.|.+.+..         . ....+-+.++|++|+|||+||+.+++  +. ...   .+.++.+.-.    
T Consensus        13 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~~---~~~i~~~~l~----   83 (322)
T 1xwi_A           13 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT--EANNST---FFSISSSDLV----   83 (322)
T ss_dssp             GSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH--HTTSCE---EEEEECCSSC----
T ss_pred             HhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH--HcCCCc---EEEEEhHHHH----
Confidence            889999888888877632         1 12346788999999999999999998  33 111   1223332211    


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCCCc---------hh----HHHHHhhCC---CCC
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNS---------EI----WSDLEELLP---DDE  319 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------~~----~~~l~~~l~---~~~  319 (394)
                                ...     .......+...+...-..++.+|+||++.. .         ..    ...+...+.   ...
T Consensus        84 ----------~~~-----~g~~~~~~~~lf~~a~~~~~~vl~iDEid~-l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~  147 (322)
T 1xwi_A           84 ----------SKW-----LGESEKLVKNLFQLARENKPSIIFIDEIDS-LCGSRSENESEAARRIKTEFLVQMQGVGVDN  147 (322)
T ss_dssp             ----------CSS-----CCSCHHHHHHHHHHHHHTSSEEEEEETTTG-GGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred             ----------hhh-----hhHHHHHHHHHHHHHHhcCCcEEEeecHHH-hccccccccchHHHHHHHHHHHHHhcccccC
Confidence                      000     011223333333333346789999999976 1         11    122222221   123


Q ss_pred             CCcEEEEecCChH-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCC
Q 016120          320 NGSRVLITVTDPD-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSM  374 (394)
Q Consensus       320 ~gs~IivTTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~  374 (394)
                      .+..||.||..+. +-..+- ......+.     +++.  +.++-..++...+...
T Consensus       148 ~~v~vI~atn~~~~ld~al~-rRf~~~i~-----i~~P--~~~~r~~il~~~l~~~  195 (322)
T 1xwi_A          148 DGILVLGATNIPWVLDSAIR-RRFEKRIY-----IPLP--EPHARAAMFKLHLGTT  195 (322)
T ss_dssp             TTEEEEEEESCTTTSCHHHH-HTCCEEEE-----CCCC--CHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEecCCcccCCHHHH-hhcCeEEE-----eCCc--CHHHHHHHHHHHHhcC
Confidence            3445555665442 111110 12245667     8888  8888889998876543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.13  E-value=1.5e-05  Score=73.32  Aligned_cols=152  Identities=17%  Similarity=0.146  Sum_probs=82.0

Q ss_pred             ccceecccHHHHHH-------HHhcC-CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHH
Q 016120          187 DINEFERGREELFD-------LLIEG-PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLD  258 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~-------~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~  258 (394)
                      .++|.....++++.       .+... ......+.|+|++|+|||+||+.+++.  ....|   +.++.+..        
T Consensus        34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~--------  100 (272)
T 1d2n_A           34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDK--------  100 (272)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGG--------
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHH--------
Confidence            56777766666655       33222 345678889999999999999999883  22221   22222210        


Q ss_pred             HHHHHhCCCCCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC-----------CchhHHHHHhhCCC---CCCCcE
Q 016120          259 DIIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-----------NSEIWSDLEELLPD---DENGSR  323 (394)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-----------~~~~~~~l~~~l~~---~~~gs~  323 (394)
                           +.+. .     .. ....+...+......+..+|+||++..           .......+...+..   ......
T Consensus       101 -----~~g~-~-----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~  169 (272)
T 1d2n_A          101 -----MIGF-S-----ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL  169 (272)
T ss_dssp             -----CTTC-C-----HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred             -----hcCC-c-----hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence                 0000 0     00 112233333334456789999999753           01222334443332   222344


Q ss_pred             EEEecCChHHHhhchhcC-CCceeeCCccCCCCCCCCh-HHHHHHHHH
Q 016120          324 VLITVTDPDLLASLEMEN-GEKIRRDSVLFGGPLIRLK-HEAWQFFIL  369 (394)
Q Consensus       324 IivTTR~~~v~~~~~~~~-~~~~~~~~~~~l~~L~~~~-~~~~~Lf~~  369 (394)
                      ||.||..+.....+...+ -...++     ++++  +. ++...++.+
T Consensus       170 ii~ttn~~~~l~~~~l~~rf~~~i~-----~p~l--~~r~~i~~i~~~  210 (272)
T 1d2n_A          170 IIGTTSRKDVLQEMEMLNAFSTTIH-----VPNI--ATGEQLLEALEL  210 (272)
T ss_dssp             EEEEESCHHHHHHTTCTTTSSEEEE-----CCCE--EEHHHHHHHHHH
T ss_pred             EEEecCChhhcchhhhhcccceEEc-----CCCc--cHHHHHHHHHHh
Confidence            666787775544310011 245677     9999  87 666666655

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.10  E-value=2e-06  Score=75.36  Aligned_cols=95  Identities=17%  Similarity=0.132  Sum_probs=53.7

Q ss_pred             ccceec----ccHHHHHHHHhcCCCC--ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHH
Q 016120          187 DINEFE----RGREELFDLLIEGPSG--LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDI  260 (394)
Q Consensus       187 ~~~Gr~----~~~~~i~~~L~~~~~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i  260 (394)
                      ++++..    ..++.+.+++......  ...+.|+|++|+|||+||+.+++  ........++|+++      ..+...+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~------~~~~~~~   97 (202)
T 2w58_A           26 DVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV------PELFREL   97 (202)
T ss_dssp             SSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH------HHHHHHH
T ss_pred             hccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh------HHHHHHH
Confidence            566544    3444555555543221  26788999999999999999998  44333344566654      2444444


Q ss_pred             HHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC
Q 016120          261 IKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD  303 (394)
Q Consensus       261 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~  303 (394)
                      .......         ........+.+     .-+|||||++.
T Consensus        98 ~~~~~~~---------~~~~~~~~~~~-----~~~lilDei~~  126 (202)
T 2w58_A           98 KHSLQDQ---------TMNEKLDYIKK-----VPVLMLDDLGA  126 (202)
T ss_dssp             HHC---C---------CCHHHHHHHHH-----SSEEEEEEECC
T ss_pred             HHHhccc---------hHHHHHHHhcC-----CCEEEEcCCCC
Confidence            4332211         22223333221     23999999965

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.04  E-value=5.3e-05  Score=71.94  Aligned_cols=145  Identities=12%  Similarity=0.085  Sum_probs=86.1

Q ss_pred             ccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccc--------------------cccCeeEEEEeCCCCC
Q 016120          193 RGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVK--------------------FYFDCLAWVRVSIAYD  252 (394)
Q Consensus       193 ~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~wv~vs~~~~  252 (394)
                      +..+.+.+.+..+ .-...+.++|+.|+|||++|+.+.+...-.                    .|++. .++.....  
T Consensus         9 ~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~--   84 (334)
T 1a5t_A            9 PDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKG--   84 (334)
T ss_dssp             HHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTT--
T ss_pred             HHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEecccc--
Confidence            3455566666543 234568899999999999999887531100                    11221 22222100  


Q ss_pred             HHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHHHc----cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEE
Q 016120          253 FGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYL----TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLI  326 (394)
Q Consensus       253 ~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~Iiv  326 (394)
                                      .     .. ..+++.+.+...-    .+++-++|+|++.. +....+.+...+-....++.+|+
T Consensus        85 ----------------~-----~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il  143 (334)
T 1a5t_A           85 ----------------K-----NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL  143 (334)
T ss_dssp             ----------------C-----SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred             ----------------C-----CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence                            0     11 2333332222211    24678899999988 55666777777765556677777


Q ss_pred             ecCChH-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          327 TVTDPD-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       327 TTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      +|.+++ +...+  .+....++     +.++  +.++....+.+..
T Consensus       144 ~t~~~~~l~~ti--~SRc~~~~-----~~~~--~~~~~~~~L~~~~  180 (334)
T 1a5t_A          144 ATREPERLLATL--RSRCRLHY-----LAPP--PEQYAVTWLSREV  180 (334)
T ss_dssp             EESCGGGSCHHH--HTTSEEEE-----CCCC--CHHHHHHHHHHHC
T ss_pred             EeCChHhCcHHH--hhcceeee-----CCCC--CHHHHHHHHHHhc
Confidence            776653 33333  23456788     9999  9999888887664

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=98.04  E-value=2.7e-05  Score=73.07  Aligned_cols=147  Identities=7%  Similarity=-0.028  Sum_probs=90.9

Q ss_pred             eecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc-ccc-cccCeeEEEEeCC-CCCHHHHHHHHHHHhCC
Q 016120          190 EFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND-HVK-FYFDCLAWVRVSI-AYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       190 Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~-~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~  266 (394)
                      |-++.++.+.+.+..+.  .+...++|+.|+||||+|+.+.+.. ... .|.+ ..+++.+. ...+.. .+++.+.+..
T Consensus         1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~~~   76 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFLNY   76 (305)
T ss_dssp             ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHHHhh
Confidence            34555667777776554  6788899999999999999997621 111 1223 34454332 222221 2223333221


Q ss_pred             CCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhcCCCc
Q 016120          267 PSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEMENGEK  344 (394)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~  344 (394)
                      ..                    ..+++-++|+|++.. +....+.|...+-...+.+.+|++|.++ .+...+  .+.  
T Consensus        77 ~p--------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI--~SR--  132 (305)
T 2gno_A           77 SP--------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTI--KSR--  132 (305)
T ss_dssp             CC--------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHH--HTT--
T ss_pred             cc--------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHH--Hce--
Confidence            11                    124577899999988 6666777777775555677777776554 444444  222  


Q ss_pred             eeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          345 IRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       345 ~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      +++     +.++  +.++....+.+.+
T Consensus       133 ~~~-----f~~l--~~~~i~~~L~~~~  152 (305)
T 2gno_A          133 VFR-----VVVN--VPKEFRDLVKEKI  152 (305)
T ss_dssp             SEE-----EECC--CCHHHHHHHHHHH
T ss_pred             eEe-----CCCC--CHHHHHHHHHHHh
Confidence            888     9999  9999999888776

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.03  E-value=1.7e-05  Score=75.15  Aligned_cols=146  Identities=12%  Similarity=-0.003  Sum_probs=86.8

Q ss_pred             ccceecccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      +++|++..++++..++...   ......+.|+|++|+|||+||+.+.+  .....|   +.++.+...            
T Consensus        30 ~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~~---~~~~~~~~~------------   92 (338)
T 3pfi_A           30 GYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY--EMSANI---KTTAAPMIE------------   92 (338)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCCE---EEEEGGGCC------------
T ss_pred             HhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCCe---EEecchhcc------------
Confidence            8999999999998888642   23445678999999999999999987  333222   222221111            


Q ss_pred             hCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCC------------------CCcEE
Q 016120          264 VMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDE------------------NGSRV  324 (394)
Q Consensus       264 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~------------------~gs~I  324 (394)
                                   ........+..  ..+..+|+||++.. .......+...+....                  ++..+
T Consensus        93 -------------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T 3pfi_A           93 -------------KSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL  157 (338)
T ss_dssp             -------------SHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred             -------------chhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence                         11111111111  23567899999987 4444444544332211                  12455


Q ss_pred             EEecCCh-HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          325 LITVTDP-DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       325 ivTTR~~-~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      |.||... .+...+. ......++     ++++  +.++...++.+.+.
T Consensus       158 i~atn~~~~l~~~L~-~R~~~~i~-----l~~~--~~~e~~~il~~~~~  198 (338)
T 3pfi_A          158 IGATTRAGMLSNPLR-DRFGMQFR-----LEFY--KDSELALILQKAAL  198 (338)
T ss_dssp             EEEESCGGGSCHHHH-TTCSEEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred             EEeCCCccccCHHHH-hhcCEEee-----CCCc--CHHHHHHHHHHHHH
Confidence            5555543 2221120 11236788     9999  99999999887643

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.01  E-value=2.6e-05  Score=74.78  Aligned_cols=153  Identities=12%  Similarity=0.046  Sum_probs=84.2

Q ss_pred             ccceecccHHHHHHHHhc----------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120          187 DINEFERGREELFDLLIE----------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  256 (394)
                      +++|.+..++++.+.+..          .....+.+.|+|++|+|||+||+.+++  .....   .+.++.+.-..    
T Consensus        85 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~--~~~~~---~~~i~~~~l~~----  155 (357)
T 3d8b_A           85 DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS--QSGAT---FFSISASSLTS----  155 (357)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH--HTTCE---EEEEEGGGGCC----
T ss_pred             HhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH--HcCCe---EEEEehHHhhc----
Confidence            899999999999887742          112355788999999999999999987  33222   23444332111    


Q ss_pred             HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C-----------chhHHHHHhhCCC----CCC
Q 016120          257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N-----------SEIWSDLEELLPD----DEN  320 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~-----------~~~~~~l~~~l~~----~~~  320 (394)
                                ..     .......+...+...-..++.+|+||++.. .           ...+..+...+..    ...
T Consensus       156 ----------~~-----~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~  220 (357)
T 3d8b_A          156 ----------KW-----VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED  220 (357)
T ss_dssp             ----------SS-----TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred             ----------cc-----cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence                      00     000111222222222235678999999853 0           0112333332221    123


Q ss_pred             CcEEEEecCChH-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          321 GSRVLITVTDPD-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       321 gs~IivTTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      +..||.||..+. +...+- ......+.     +...  +.++...++...+
T Consensus       221 ~v~vI~atn~~~~l~~~l~-~Rf~~~i~-----i~~p--~~~~r~~il~~~~  264 (357)
T 3d8b_A          221 RILVVGATNRPQEIDEAAR-RRLVKRLY-----IPLP--EASARKQIVINLM  264 (357)
T ss_dssp             CEEEEEEESCGGGBCHHHH-TTCCEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred             CEEEEEecCChhhCCHHHH-hhCceEEE-----eCCc--CHHHHHHHHHHHH
Confidence            445555665432 211110 11234667     8888  8888888887764

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=98.01  E-value=4.1e-06  Score=69.41  Aligned_cols=46  Identities=11%  Similarity=-0.044  Sum_probs=33.1

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +++|++..+.++.+.+..-.....-|.|+|.+|+|||++|+.+++.
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence            6789988888888877542112234669999999999999999883

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.00  E-value=3.7e-05  Score=73.65  Aligned_cols=156  Identities=19%  Similarity=0.172  Sum_probs=86.2

Q ss_pred             ccceecccHHHHHHHHhcC----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120          187 DINEFERGREELFDLLIEG----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  256 (394)
                      +++|.+..++.|.+.+...          ....+-+.++|++|+|||+||+.+++  ....+|   +.++.      ..+
T Consensus        52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~--~~~~~~---~~v~~------~~l  120 (355)
T 2qp9_X           52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT--EANSTF---FSVSS------SDL  120 (355)
T ss_dssp             GSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH--HHTCEE---EEEEH------HHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH--HhCCCE---EEeeH------HHH
Confidence            8999999999998877311          12234577899999999999999998  333222   22221      111


Q ss_pred             HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cch-----------hHHHHHhhC---CCCCCC
Q 016120          257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSE-----------IWSDLEELL---PDDENG  321 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~-----------~~~~l~~~l---~~~~~g  321 (394)
                          .....         ......+...+...-..++.+|+||++.. ...           ....+...+   .....+
T Consensus       121 ----~~~~~---------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~  187 (355)
T 2qp9_X          121 ----VSKWM---------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG  187 (355)
T ss_dssp             ----HSCC------------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred             ----hhhhc---------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence                11100         11222222233333345789999999986 110           122222222   222345


Q ss_pred             cEEEEecCChH-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCC
Q 016120          322 SRVLITVTDPD-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSM  374 (394)
Q Consensus       322 s~IivTTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~  374 (394)
                      ..||.||..+. +...+- ......+.     +++.  +.++-..++...+...
T Consensus       188 v~vI~atn~~~~ld~al~-rRf~~~i~-----i~~P--~~~~r~~il~~~l~~~  233 (355)
T 2qp9_X          188 VLVLGATNIPWQLDSAIR-RRFERRIY-----IPLP--DLAARTTMFEINVGDT  233 (355)
T ss_dssp             EEEEEEESCGGGSCHHHH-HTCCEEEE-----CCCC--CHHHHHHHHHHHHTTS
T ss_pred             eEEEeecCCcccCCHHHH-cccCEEEE-----eCCc--CHHHHHHHHHHHHhhC
Confidence            55666666542 111110 12345667     8888  8888889998876543

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.98  E-value=7.9e-06  Score=70.20  Aligned_cols=102  Identities=14%  Similarity=0.059  Sum_probs=55.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY  288 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~  288 (394)
                      -..+.|+|++|+||||||+.+++.......+. +++++      ...+...+.........       .  .....    
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~-------~--~~~~~----   97 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD-------T--KFLKT----   97 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC-------S--HHHHH----
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH-------H--HHHHH----
Confidence            46789999999999999999988321112222 23333      34444444443322211       1  12222    


Q ss_pred             ccCCeEEEEEeCCCC-CchhHH--HHHhhCCCC-CCCcEEEEecCCh
Q 016120          289 LTNKKYFIVLDDVFD-NSEIWS--DLEELLPDD-ENGSRVLITVTDP  331 (394)
Q Consensus       289 l~~kr~LlVlDdv~~-~~~~~~--~l~~~l~~~-~~gs~IivTTR~~  331 (394)
                      +. +.-+|||||++. ..+.|.  .+...+... .+|..||+||...
T Consensus        98 ~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~  143 (180)
T 3ec2_A           98 VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS  143 (180)
T ss_dssp             HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred             hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            21 456899999984 233332  232222211 2466788888753

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.98  E-value=7.1e-05  Score=73.95  Aligned_cols=156  Identities=19%  Similarity=0.171  Sum_probs=85.6

Q ss_pred             ccceecccHHHHHHHHhc----------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120          187 DINEFERGREELFDLLIE----------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  256 (394)
                      +++|.+..++.|.+.+..          .....+-+.++|++|+|||+||+.+++  ...    ..-++.++...    +
T Consensus       135 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~--~~~----~~~~~~v~~~~----l  204 (444)
T 2zan_A          135 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT--EAN----NSTFFSISSSD----L  204 (444)
T ss_dssp             GSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH--HCC----SSEEEEECCC------
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH--HcC----CCCEEEEeHHH----H
Confidence            899999999988887731          012346788999999999999999998  331    12233333221    1


Q ss_pred             HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C-------ch----hHHHHHhhCCC---CCCC
Q 016120          257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N-------SE----IWSDLEELLPD---DENG  321 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~-------~~----~~~~l~~~l~~---~~~g  321 (394)
                      ....   .+....       ....+..   ..-..++.+|+||++.. .       ..    ....+...+..   ...+
T Consensus       205 ~~~~---~g~~~~-------~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~  271 (444)
T 2zan_A          205 VSKW---LGESEK-------LVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG  271 (444)
T ss_dssp             ----------CCC-------THHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred             Hhhh---cchHHH-------HHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence            1110   111110       2222222   22235678999999986 0       01    12233333322   2345


Q ss_pred             cEEEEecCChHHH-hhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120          322 SRVLITVTDPDLL-ASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       322 s~IivTTR~~~v~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~  373 (394)
                      ..||.||..+... ..+- ......+.     +++.  +.++-..+|...+..
T Consensus       272 v~vI~atn~~~~ld~al~-rRf~~~i~-----i~~P--~~~~r~~il~~~l~~  316 (444)
T 2zan_A          272 ILVLGATNIPWVLDSAIR-RRFEKRIY-----IPLP--EAHARAAMFRLHLGS  316 (444)
T ss_dssp             CEEEEEESCGGGSCHHHH-TTCCEEEE-----CCCC--CHHHHHHHHHHHHTT
T ss_pred             EEEEecCCCccccCHHHH-hhcceEEE-----eCCc--CHHHHHHHHHHHHhc
Confidence            5666677654221 1110 12235666     8777  888888888887654

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.97  E-value=1.5e-05  Score=80.40  Aligned_cols=161  Identities=9%  Similarity=0.030  Sum_probs=90.5

Q ss_pred             ccceecccHHHHHHHHhcCC---------------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCC
Q 016120          187 DINEFERGREELFDLLIEGP---------------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAY  251 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~---------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~  251 (394)
                      +++|++..++++.+++....               +..+.+.|+|++|+|||++|+.+++.  ..  + ..+.++.+...
T Consensus        40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~--l~--~-~~i~in~s~~~  114 (516)
T 1sxj_A           40 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG--Y-DILEQNASDVR  114 (516)
T ss_dssp             GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT--C-EEEEECTTSCC
T ss_pred             HhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH--cC--C-CEEEEeCCCcc
Confidence            89999999999999997510               13468889999999999999999983  31  2 23344554443


Q ss_pred             CHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C---chhHHHHHhhCCCCCCCcEEEEe
Q 016120          252 DFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N---SEIWSDLEELLPDDENGSRVLIT  327 (394)
Q Consensus       252 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~---~~~~~~l~~~l~~~~~gs~IivT  327 (394)
                      ... .....+........    ...-......  .....+++.+|+||++.. .   ...+..+...+...  +..||++
T Consensus       115 ~~~-~~~~~i~~~~~~~~----~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli  185 (516)
T 1sxj_A          115 SKT-LLNAGVKNALDNMS----VVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILI  185 (516)
T ss_dssp             CHH-HHHHTGGGGTTBCC----STTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEE
T ss_pred             hHH-HHHHHHHHHhcccc----HHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEE
Confidence            332 22222222211110    0000000000  001235788999999976 1   22234444333222  2345555


Q ss_pred             cCChH---HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          328 VTDPD---LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       328 TR~~~---v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      +.+..   +....   .....++     ++++  +.++....+.+.+
T Consensus       186 ~~~~~~~~l~~l~---~r~~~i~-----f~~~--~~~~~~~~L~~i~  222 (516)
T 1sxj_A          186 CNERNLPKMRPFD---RVCLDIQ-----FRRP--DANSIKSRLMTIA  222 (516)
T ss_dssp             ESCTTSSTTGGGT---TTSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred             EcCCCCccchhhH---hceEEEE-----eCCC--CHHHHHHHHHHHH
Confidence            44322   22222   3355778     9999  9999988887764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.97  E-value=3.1e-05  Score=70.78  Aligned_cols=46  Identities=11%  Similarity=-0.000  Sum_probs=33.4

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +++|.+..+.++.+.+..-......+.|+|.+|+|||++|+.+++.
T Consensus         7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A            7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred             cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence            6889998888888777542222345679999999999999999873

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.96  E-value=7.9e-05  Score=72.22  Aligned_cols=153  Identities=11%  Similarity=0.052  Sum_probs=82.0

Q ss_pred             ccceecccHHHHHHHHhcC----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120          187 DINEFERGREELFDLLIEG----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  256 (394)
                      +++|.+..++.+.+.+...          ....+-+.|+|++|+|||+||+.+++  +....   .+.++.+.-...   
T Consensus       116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~--~~~~~---~~~v~~~~l~~~---  187 (389)
T 3vfd_A          116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA--ESNAT---FFNISAASLTSK---  187 (389)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH--HTTCE---EEEECSCCC------
T ss_pred             HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH--hhcCc---EEEeeHHHhhcc---
Confidence            8999999999998887321          12245778999999999999999987  33222   223332221110   


Q ss_pred             HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCCCc-------------hhHHHHHhhC---CC-CC
Q 016120          257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFDNS-------------EIWSDLEELL---PD-DE  319 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------------~~~~~l~~~l---~~-~~  319 (394)
                             .         .......+...+...-...+.+|+||++.. .             .....+...+   .. ..
T Consensus       188 -------~---------~g~~~~~~~~~~~~a~~~~~~il~iDEid~-l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~  250 (389)
T 3vfd_A          188 -------Y---------VGEGEKLVRALFAVARELQPSIIFIDQVDS-LLCERREGEHDASRRLKTEFLIEFDGVQSAGD  250 (389)
T ss_dssp             --------------------CHHHHHHHHHHHHHSSSEEEEEETGGG-GC--------CTHHHHHHHHHHHHHHHC----
T ss_pred             -------c---------cchHHHHHHHHHHHHHhcCCeEEEEECchh-hcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence                   0         000222222222222234668999999964 1             1111222111   11 12


Q ss_pred             CCcEEEEecCChH-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          320 NGSRVLITVTDPD-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       320 ~gs~IivTTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ....||.||.... +...+- ......+.     +.+.  +.++...++...+.
T Consensus       251 ~~v~vI~atn~~~~l~~~l~-~R~~~~i~-----i~~p--~~~~r~~il~~~~~  296 (389)
T 3vfd_A          251 DRVLVMGATNRPQELDEAVL-RRFIKRVY-----VSLP--NEETRLLLLKNLLC  296 (389)
T ss_dssp             -CEEEEEEESCGGGCCHHHH-TTCCEEEE-----CCCC--CHHHHHHHHHHHHT
T ss_pred             CCEEEEEecCCchhcCHHHH-cCcceEEE-----cCCc--CHHHHHHHHHHHHH
Confidence            2345555665432 211110 11234567     8888  88998888887754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.94  E-value=3e-05  Score=73.75  Aligned_cols=147  Identities=12%  Similarity=0.095  Sum_probs=86.3

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc-ccC-eeEEEEeCCCCCHHHHHHHHHHHh
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF-YFD-CLAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~-~~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      +++|.+..++.+...+..+.  .+.+.++|++|+||||+|+.+...  ... .+. ...-++.+....            
T Consensus        26 ~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~------------   89 (340)
T 1sxj_C           26 EVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRG------------   89 (340)
T ss_dssp             GCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCS------------
T ss_pred             HhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCccccc------------
Confidence            78898888888888887653  333789999999999999999873  211 111 112222222111            


Q ss_pred             CCCCCCccccCcCHHHHHHHHHHHc------cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhh
Q 016120          265 MPPSRVSVIIGEDYQLKKSILRDYL------TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLAS  336 (394)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~  336 (394)
                                   .+.+...+....      .+.+-++|+|++.. +....+.+...+......+++|++|.... +...
T Consensus        90 -------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~  156 (340)
T 1sxj_C           90 -------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA  156 (340)
T ss_dssp             -------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred             -------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence                         112222222211      23467899999976 44555555555443344567777665432 2222


Q ss_pred             chhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          337 LEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       337 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      +  .+....++     +.++  +.++....+.+.+
T Consensus       157 i--~sR~~~~~-----~~~l--~~~~~~~~l~~~~  182 (340)
T 1sxj_C          157 L--LSQCTRFR-----FQPL--PQEAIERRIANVL  182 (340)
T ss_dssp             H--HTTSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred             H--HhhceeEe-----ccCC--CHHHHHHHHHHHH
Confidence            2  12334677     8999  9888877776654

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.92  E-value=3.2e-05  Score=77.28  Aligned_cols=158  Identities=15%  Similarity=0.164  Sum_probs=91.0

Q ss_pred             ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      +++|.+..++++.+++...           -....-+.|+|++|+|||++|+.+++  +...+|   +.++.      ..
T Consensus       205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~--~~~~~f---v~vn~------~~  273 (489)
T 3hu3_A          205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLING------PE  273 (489)
T ss_dssp             GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH--HCSSEE---EEEEH------HH
T ss_pred             HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH--HhCCCE---EEEEc------hH
Confidence            7899999999988877532           12345678999999999999999987  333222   23331      11


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C-------c----hhHHHHHhhCC--CCCCC
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N-------S----EIWSDLEELLP--DDENG  321 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~-------~----~~~~~l~~~l~--~~~~g  321 (394)
                          +...+         .......+...+.....+++.+|+||++.. .       .    .....|...+.  ....+
T Consensus       274 ----l~~~~---------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~  340 (489)
T 3hu3_A          274 ----IMSKL---------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH  340 (489)
T ss_dssp             ----HHTSC---------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred             ----hhhhh---------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence                11111         011233344444444556789999999943 0       1    11223333322  12234


Q ss_pred             cEEEEecCChH-HHhhchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120          322 SRVLITVTDPD-LLASLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP  375 (394)
Q Consensus       322 s~IivTTR~~~-v~~~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~  375 (394)
                      ..||.||..+. +...+-. ......+.     +.+.  +.++-.+++..++...+
T Consensus       341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~-----i~~P--~~~eR~~IL~~~~~~~~  389 (489)
T 3hu3_A          341 VIVMAATNRPNSIDPALRRFGRFDREVD-----IGIP--DATGRLEILQIHTKNMK  389 (489)
T ss_dssp             EEEEEEESCGGGBCGGGGSTTSSCEEEE-----CCCC--CHHHHHHHHHHHTTTSC
T ss_pred             eEEEEecCCccccCHHHhCCCcCceEEE-----eCCC--CHHHHHHHHHHHHhcCC
Confidence            45665666553 2222210 01234677     8888  99999999988865443

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.87  E-value=4.2e-05  Score=71.39  Aligned_cols=117  Identities=10%  Similarity=0.146  Sum_probs=64.5

Q ss_pred             ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD  259 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~  259 (394)
                      .++|.+..++.+...+...       ......+.++|++|+|||++|+.+++  .....-...+.++.+.-.... ....
T Consensus        18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~~~~~~-~~~~   94 (311)
T 4fcw_A           18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKH-AVSR   94 (311)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeecccccccc-cHHH
Confidence            5789888888888777542       12245789999999999999999987  332211223445544322211 1112


Q ss_pred             HHHHhCCCCCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhC
Q 016120          260 IIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELL  315 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l  315 (394)
                      +   ++....   .... ....+...+.   .....+|+||++.. +...+..+...+
T Consensus        95 l---~g~~~~---~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l  143 (311)
T 4fcw_A           95 L---IGAPPG---YVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQML  143 (311)
T ss_dssp             H---HCCCTT---STTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred             h---cCCCCc---cccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHH
Confidence            2   222111   0011 1112222221   23447999999987 555566665544

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.86  E-value=0.00014  Score=71.28  Aligned_cols=158  Identities=15%  Similarity=0.169  Sum_probs=88.6

Q ss_pred             ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|.++.+++|.+.+.-.           -...+-+.++|++|+|||.||+.+++  +...+|   +.++.+.-.+   
T Consensus       182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~s---  253 (437)
T 4b4t_L          182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVD---  253 (437)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC---
T ss_pred             HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhcc---
Confidence            7889998888887766421           13456777999999999999999998  444333   2333322111   


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC---C----c----h----hHHHHHhhCC--CC
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---N----S----E----IWSDLEELLP--DD  318 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~----~----~----~~~~l~~~l~--~~  318 (394)
                                 ..     ...+...+.......-...+++|.+|++..   .    .    .    ....+...+.  ..
T Consensus       254 -----------k~-----~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~  317 (437)
T 4b4t_L          254 -----------KY-----IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN  317 (437)
T ss_dssp             -----------SS-----SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred             -----------cc-----chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence                       00     011222223333333345789999999974   0    0    0    1222332221  22


Q ss_pred             CCCcEEEEecCChHHHhhchhcC--CCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120          319 ENGSRVLITVTDPDLLASLEMEN--GEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP  375 (394)
Q Consensus       319 ~~gs~IivTTR~~~v~~~~~~~~--~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~  375 (394)
                      ..+..||.||-.++.....-..+  -...+.     ++.-  +.++-.++|+.++...+
T Consensus       318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~-----i~lP--d~~~R~~Il~~~~~~~~  369 (437)
T 4b4t_L          318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVE-----IPLP--NEAGRLEIFKIHTAKVK  369 (437)
T ss_dssp             TTSSEEEEEESSTTSSCTTTTSTTSEEEEEC-----CCCC--CHHHHHHHHHHHHHTSC
T ss_pred             CCCeEEEEecCCchhhCHHHhCCCccceeee-----cCCc--CHHHHHHHHHHHhcCCC
Confidence            33456777777664332220011  244566     8777  77777788877755433

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.84  E-value=0.00013  Score=67.57  Aligned_cols=45  Identities=16%  Similarity=0.224  Sum_probs=36.7

Q ss_pred             ccceecccHHHHHHHHhcC----------CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEG----------PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|.+..++.+.+.+...          ......+.|+|++|+|||++|+.+++
T Consensus        22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           22 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             GSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             HhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence            8999999999988877431          12345778999999999999999988

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.84  E-value=0.00013  Score=66.27  Aligned_cols=156  Identities=15%  Similarity=0.149  Sum_probs=82.2

Q ss_pred             ccceecccHHHHHHHH---hcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120          187 DINEFERGREELFDLL---IEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L---~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  256 (394)
                      +++|.+..++++.+.+   ...       ....+-+.|+|++|+||||||+.+++  .....|   +.++.+.-..    
T Consensus        13 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~--~~~~~~---~~i~~~~~~~----   83 (257)
T 1lv7_A           13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGSDFVE----   83 (257)
T ss_dssp             GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH--HHTCCE---EEECSCSSTT----
T ss_pred             HhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH--HcCCCE---EEEeHHHHHH----
Confidence            8999887777665543   221       01233478999999999999999987  332222   3332221100    


Q ss_pred             HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C--c------------hhHHHHHhhCC--CCC
Q 016120          257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N--S------------EIWSDLEELLP--DDE  319 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~--~------------~~~~~l~~~l~--~~~  319 (394)
                            ..         .......+...+.......+.++++|++.. .  .            .....+...+.  ...
T Consensus        84 ------~~---------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~  148 (257)
T 1lv7_A           84 ------MF---------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN  148 (257)
T ss_dssp             ------SC---------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred             ------Hh---------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence                  00         011233333444444455678999999843 0  0            11222322221  123


Q ss_pred             CCcEEEEecCChH-HHhhchhc-CCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120          320 NGSRVLITVTDPD-LLASLEME-NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       320 ~gs~IivTTR~~~-v~~~~~~~-~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~  373 (394)
                      .+..||.||..++ +....-.. .-...+.     +++.  +.++-.+++...+..
T Consensus       149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~-----i~~P--~~~~r~~il~~~~~~  197 (257)
T 1lv7_A          149 EGIIVIAATNRPDVLDPALLRPGRFDRQVV-----VGLP--DVRGREQILKVHMRR  197 (257)
T ss_dssp             SCEEEEEEESCTTTSCGGGGSTTSSCEEEE-----CCCC--CHHHHHHHHHHHHTT
T ss_pred             CCEEEEEeeCCchhCCHHHcCCCcCCeEEE-----eCCC--CHHHHHHHHHHHHhc
Confidence            3455666776553 21222000 1234566     8777  878877888776543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.83  E-value=9e-05  Score=69.81  Aligned_cols=152  Identities=11%  Similarity=0.049  Sum_probs=77.1

Q ss_pred             ccc-eecc--cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          187 DIN-EFER--GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       187 ~~~-Gr~~--~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      +|+ |...  ....+...+.........+.|+|++|+||||||+.+++.  ....-...++++.      ..+...+...
T Consensus        12 ~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~~------~~~~~~~~~~   83 (324)
T 1l8q_A           12 NFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSSA------DDFAQAMVEH   83 (324)
T ss_dssp             SCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEEH------HHHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEEH------HHHHHHHHHH
Confidence            555 5332  233444444443323456789999999999999999983  3221112345543      2333344333


Q ss_pred             hCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cc--hhHHHHHhhCCC-CCCCcEEEEecCCh--------
Q 016120          264 VMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NS--EIWSDLEELLPD-DENGSRVLITVTDP--------  331 (394)
Q Consensus       264 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~--~~~~~l~~~l~~-~~~gs~IivTTR~~--------  331 (394)
                      +...         .....    ...+. +.-+|+|||+.. ..  ...+.+...+.. ...|..||+||.++        
T Consensus        84 ~~~~---------~~~~~----~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~  149 (324)
T 1l8q_A           84 LKKG---------TINEF----RNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS  149 (324)
T ss_dssp             HHHT---------CHHHH----HHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred             HHcC---------cHHHH----HHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence            3211         11111    12222 367999999977 22  222333333221 12456788877643        


Q ss_pred             -HHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          332 -DLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       332 -~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                       .+...+   ....+++     ++|   +.++...++.+.+
T Consensus       150 ~~L~sR~---~~~~~i~-----l~~---~~~e~~~il~~~~  179 (324)
T 1l8q_A          150 DRLVSRF---EGGILVE-----IEL---DNKTRFKIIKEKL  179 (324)
T ss_dssp             HHHHHHH---HTSEEEE-----CCC---CHHHHHHHHHHHH
T ss_pred             hHhhhcc---cCceEEE-----eCC---CHHHHHHHHHHHH
Confidence             122222   1224566     665   4566677776664

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.82  E-value=0.00012  Score=70.71  Aligned_cols=160  Identities=13%  Similarity=0.153  Sum_probs=89.9

Q ss_pred             ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|.++.+++|.+.+.-.           -...+-+.++|++|+|||.||+.+++  +...+|   +.++.+.-.+   
T Consensus       149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s---  220 (405)
T 4b4t_J          149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ---  220 (405)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC---
T ss_pred             HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc---
Confidence            8899998888887766421           12345677999999999999999998  444443   3333322110   


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC---C------ch------hHHHHHhhCC--CC
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---N------SE------IWSDLEELLP--DD  318 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~------~~------~~~~l~~~l~--~~  318 (394)
                                 ..     .+.+...+.......-...+++|.+|++..   .      ..      ....+...+.  ..
T Consensus       221 -----------k~-----vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~  284 (405)
T 4b4t_J          221 -----------KY-----IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET  284 (405)
T ss_dssp             -----------SS-----TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred             -----------cc-----cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence                       00     011223333333333346789999999975   0      00      1122222221  12


Q ss_pred             CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCCCC
Q 016120          319 ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLE  377 (394)
Q Consensus       319 ~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~~~  377 (394)
                      ..+-.||.||..++.....=..  .-+..+.     ++.-  +.++-.++|+.+....+..
T Consensus       285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~-----i~lP--d~~~R~~Il~~~~~~~~l~  338 (405)
T 4b4t_J          285 SKNIKIIMATNRLDILDPALLRPGRIDRKIE-----FPPP--SVAARAEILRIHSRKMNLT  338 (405)
T ss_dssp             CCCEEEEEEESCSSSSCHHHHSTTSSCCEEE-----CCCC--CHHHHHHHHHHHHTTSBCC
T ss_pred             CCCeEEEeccCChhhCCHhHcCCCcCceEEE-----cCCc--CHHHHHHHHHHHhcCCCCC
Confidence            3344566677655322111001  2356777     8877  8888888888776654433

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.74  E-value=3.9e-05  Score=70.17  Aligned_cols=45  Identities=20%  Similarity=0.262  Sum_probs=34.2

Q ss_pred             ccceecccHHHHHHHHhc----------CCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIE----------GPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|.+..++.+.+.+..          .....+-+.|+|++|+|||+||+.+++
T Consensus        12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           12 DMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             TSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred             HhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence            899999888888776541          011123366999999999999999988

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.73  E-value=0.00025  Score=69.54  Aligned_cols=162  Identities=17%  Similarity=0.168  Sum_probs=90.4

Q ss_pred             ccceecccHHHHHHHHhc-----------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIE-----------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|.++.+++|.+.+.-           +-...+-|.++|++|+|||.||+.+++  +...+|   +.+..+.-     
T Consensus       210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L-----  279 (467)
T 4b4t_H          210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSEL-----  279 (467)
T ss_dssp             SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGG-----
T ss_pred             HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHh-----
Confidence            789999888888776532           113456677999999999999999998  444433   33332221     


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC---C----ch--------hHHHHHhhCC--CC
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---N----SE--------IWSDLEELLP--DD  318 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~----~~--------~~~~l~~~l~--~~  318 (394)
                               ....     .+.+...+.......-...+++|++|++..   .    ..        ....+...+.  ..
T Consensus       280 ---------~sk~-----vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~  345 (467)
T 4b4t_H          280 ---------VQKY-----VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP  345 (467)
T ss_dssp             ---------CCCS-----SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred             ---------hccc-----CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence                     1110     111223333333333346789999999975   0    00        1112222221  12


Q ss_pred             CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCCCCCC
Q 016120          319 ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLENY  379 (394)
Q Consensus       319 ~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~~~~~  379 (394)
                      ..+-.||.||-.++.....-..  .-...+.     ++..  +.++-.++|+.++...+....
T Consensus       346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~-----i~lP--d~~~R~~Ilk~~l~~~~l~~d  401 (467)
T 4b4t_H          346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVE-----FSLP--DLEGRANIFRIHSKSMSVERG  401 (467)
T ss_dssp             TTTEEEEEECSCTTSBCHHHHSTTTCCEEEC-----CCCC--CHHHHHHHHHHHHTTSCBCSS
T ss_pred             CCcEEEEeCCCCcccCChhhhccccccEEEE-----eCCc--CHHHHHHHHHHHhcCCCCCCC
Confidence            2344456576554322111001  2356677     8888  888888889877765544433

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.72  E-value=8.6e-05  Score=79.41  Aligned_cols=43  Identities=9%  Similarity=0.157  Sum_probs=37.0

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++||+.++.++++.|....  ...+.++|.+|+|||++|+.+++
T Consensus       171 ~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~  213 (854)
T 1qvr_A          171 PVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQ  213 (854)
T ss_dssp             CCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999997643  33457899999999999999987

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.67  E-value=0.00023  Score=66.62  Aligned_cols=46  Identities=15%  Similarity=0.068  Sum_probs=36.1

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +++|+...+.++.+.+..-......+.|+|.+|+|||++|+.+++.
T Consensus         3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~   48 (304)
T 1ojl_A            3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC   48 (304)
T ss_dssp             CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred             CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence            4788888888888887553223345679999999999999999873

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.66  E-value=0.00034  Score=69.45  Aligned_cols=157  Identities=14%  Similarity=0.165  Sum_probs=86.1

Q ss_pred             ccceecccHHHHHHHHh---cC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120          187 DINEFERGREELFDLLI---EG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~---~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  256 (394)
                      +++|.+..++++.+.+.   ..       -...+-+.|+|++|+|||+||+.+++  +....|   +.++.+.-...   
T Consensus        17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~f---~~is~~~~~~~---   88 (476)
T 2ce7_A           17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVPF---FHISGSDFVEL---   88 (476)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCCE---EEEEGGGTTTC---
T ss_pred             HhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCCe---eeCCHHHHHHH---
Confidence            89999887777766543   21       01123477999999999999999998  333222   23333221110   


Q ss_pred             HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-Cc--------------hhHHHHHhhCC--CCC
Q 016120          257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NS--------------EIWSDLEELLP--DDE  319 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~--------------~~~~~l~~~l~--~~~  319 (394)
                             .         ...........+.....+.+.+|+||++.. ..              .....+...+.  ...
T Consensus        89 -------~---------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~  152 (476)
T 2ce7_A           89 -------F---------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK  152 (476)
T ss_dssp             -------C---------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred             -------H---------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence                   0         000222333444444456789999999954 00              12233332221  123


Q ss_pred             CCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCC
Q 016120          320 NGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSM  374 (394)
Q Consensus       320 ~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~  374 (394)
                      .+..||.||..++.....-..  .-...+.     +++.  +.++-.+++..+....
T Consensus       153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~-----i~~P--d~~~R~~Il~~~~~~~  202 (476)
T 2ce7_A          153 EGIIVMAATNRPDILDPALLRPGRFDKKIV-----VDPP--DMLGRKKILEIHTRNK  202 (476)
T ss_dssp             GTEEEEEEESCGGGSCGGGGSTTSSCEEEE-----CCCC--CHHHHHHHHHHHHTTS
T ss_pred             CCEEEEEecCChhhhchhhcccCcceeEee-----cCCC--CHHHHHHHHHHHHHhC
Confidence            355677777766543211001  1233666     8878  8777778887765443

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.63  E-value=9.9e-05  Score=73.41  Aligned_cols=43  Identities=9%  Similarity=0.141  Sum_probs=37.0

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++||+.++..+.+.|....  ..-+.++|++|+|||++|+.+++
T Consensus       181 ~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          181 PVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             CCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred             CccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence            79999999999999997642  33456899999999999999987

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.63  E-value=0.00015  Score=67.31  Aligned_cols=45  Identities=11%  Similarity=0.060  Sum_probs=35.9

Q ss_pred             ccceecccHHHHHHHHhcC------------CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEG------------PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++|.+..++.+...+...            ......+.++|++|+|||++|+.+.+
T Consensus        16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            6899999999988877541            12234567999999999999999987

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.00019  Score=70.28  Aligned_cols=156  Identities=15%  Similarity=0.154  Sum_probs=85.2

Q ss_pred             ccceecccHHHHHHHHhc----C-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIE----G-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|.++.+++|.+.+..    .       -+..+-+.++|++|+|||.||+.+++  +...+|   +.++.+.-     
T Consensus       182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l-----  251 (434)
T 4b4t_M          182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF---LKLAAPQL-----  251 (434)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGG-----
T ss_pred             hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE---EEEehhhh-----
Confidence            899999988888776532    1       13456778999999999999999998  444333   23332221     


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC------Cch-----h----HHHHHhhCCC--C
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD------NSE-----I----WSDLEELLPD--D  318 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~------~~~-----~----~~~l~~~l~~--~  318 (394)
                               ....     .+.+...+.......-...+++|.+|++..      +..     .    ...+...+..  .
T Consensus       252 ---------~~~~-----vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~  317 (434)
T 4b4t_M          252 ---------VQMY-----IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS  317 (434)
T ss_dssp             ---------CSSC-----SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred             ---------hhcc-----cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence                     1110     011222222222222234689999999863      000     1    1223333322  1


Q ss_pred             CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120          319 ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       319 ~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~  373 (394)
                      ..+-.||.||..++.....-..  .-...+.     ++..  +.++-.++|+.++..
T Consensus       318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~-----i~lP--d~~~R~~Il~~~~~~  367 (434)
T 4b4t_M          318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIE-----FPLP--SEDSRAQILQIHSRK  367 (434)
T ss_dssp             SCSSEEEEECSSCCCCCTTTCSTTSEEEEEE-----CCCC--CHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCchhcCHhHhcCCceeEEEE-----eCCc--CHHHHHHHHHHHhcC
Confidence            2344566577665433221001  1244566     8777  777777888766543

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.56  E-value=6.3e-05  Score=62.74  Aligned_cols=24  Identities=8%  Similarity=0.036  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -..+.|+|..|+|||||++.+++.
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            457889999999999999999883

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.55  E-value=0.00054  Score=66.62  Aligned_cols=160  Identities=16%  Similarity=0.139  Sum_probs=87.5

Q ss_pred             ccceecccHHHHHHHHhc----C-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIE----G-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~----~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|.++.+++|.+.+.-    .       -+..+-|.++|++|+|||.||+.+++  +...+|   +.++.+.-     
T Consensus       183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f---i~v~~s~l-----  252 (437)
T 4b4t_I          183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF---LRIVGSEL-----  252 (437)
T ss_dssp             GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE---EEEESGGG-----
T ss_pred             ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE---EEEEHHHh-----
Confidence            889999888888776642    1       13456678999999999999999998  444333   22332211     


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC---C--------ch----hHHHHHhhCC--CC
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---N--------SE----IWSDLEELLP--DD  318 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~--------~~----~~~~l~~~l~--~~  318 (394)
                               ....     ...+...+.......-...+++|.+|++..   .        ..    ....+...+.  ..
T Consensus       253 ---------~sk~-----vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~  318 (437)
T 4b4t_I          253 ---------IQKY-----LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD  318 (437)
T ss_dssp             ---------CCSS-----SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred             ---------hhcc-----CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence                     1110     011222222222223345789999999874   0        00    1122222211  22


Q ss_pred             CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCCCC
Q 016120          319 ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLE  377 (394)
Q Consensus       319 ~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~~~  377 (394)
                      ..+-.||.||-.++.....-..  .-+..+.     ++.-  +.++-.++|+.++...+..
T Consensus       319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~-----v~lP--d~~~R~~Il~~~l~~~~l~  372 (437)
T 4b4t_I          319 RGDVKVIMATNKIETLDPALIRPGRIDRKIL-----FENP--DLSTKKKILGIHTSKMNLS  372 (437)
T ss_dssp             SSSEEEEEEESCSTTCCTTSSCTTTEEEEEC-----CCCC--CHHHHHHHHHHHHTTSCBC
T ss_pred             CCCEEEEEeCCChhhcCHHHhcCCceeEEEE-----cCCc--CHHHHHHHHHHHhcCCCCC
Confidence            3344566677665433322001  1133455     7777  7777778887776654433

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.55  E-value=0.00029  Score=74.32  Aligned_cols=152  Identities=11%  Similarity=0.079  Sum_probs=84.2

Q ss_pred             ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD  259 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~  259 (394)
                      .++|.+..++.+.+.+...       ......+.++|++|+|||++|+.+++.  ....-...+.++.+.-...      
T Consensus       492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~------  563 (758)
T 3pxi_A          492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEK------  563 (758)
T ss_dssp             TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSS------
T ss_pred             cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccc------
Confidence            6899999888888877632       122347889999999999999999873  2221122344444331110      


Q ss_pred             HHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEEEe
Q 016120          260 IIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDD-----------ENGSRVLIT  327 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~IivT  327 (394)
                              ..     . ....+...++   .....+|+||++.. ....+..|...+..+           ....+||+|
T Consensus       564 --------~~-----~-~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t  626 (758)
T 3pxi_A          564 --------HS-----T-SGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT  626 (758)
T ss_dssp             --------CC-----C-C---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred             --------cc-----c-ccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence                    00     0 1011111111   12345899999987 555556555444321           234678888


Q ss_pred             cCC-----hHH----Hhhch---hcCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          328 VTD-----PDL----LASLE---MENGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       328 TR~-----~~v----~~~~~---~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                      |..     ..+    .....   ...-..++.     +.||  +.++...++...
T Consensus       627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~-----~~~l--~~~~~~~i~~~~  674 (758)
T 3pxi_A          627 SNVGASEKDKVMGELKRAFRPEFINRIDEIIV-----FHSL--EKKHLTEIVSLM  674 (758)
T ss_dssp             ESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEE-----CC----CHHHHHHHHHHH
T ss_pred             CCCChhhHHHHHHHHHhhCCHHHHhhCCeEEe-----cCCC--CHHHHHHHHHHH
Confidence            873     111    11110   011235777     9999  999888777654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.0003  Score=68.81  Aligned_cols=92  Identities=20%  Similarity=0.196  Sum_probs=57.4

Q ss_pred             ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|.+..+++|.+.+...           -...+-+.++|++|+|||+||+.+++  +...+|   +.++.+.-.+   
T Consensus       173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~~---~~v~~~~l~~---  244 (428)
T 4b4t_K          173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAAF---IRVNGSEFVH---  244 (428)
T ss_dssp             GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCEE---EEEEGGGTCC---
T ss_pred             HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCCe---EEEecchhhc---
Confidence            8899999888887766421           13455678999999999999999998  444333   3333332111   


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCC
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVF  302 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~  302 (394)
                                 ..     .+.+...+...+...-...++++.+|++.
T Consensus       245 -----------~~-----~Ge~e~~ir~lF~~A~~~aP~IifiDEiD  275 (428)
T 4b4t_K          245 -----------KY-----LGEGPRMVRDVFRLARENAPSIIFIDEVD  275 (428)
T ss_dssp             -----------SS-----CSHHHHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred             -----------cc-----cchhHHHHHHHHHHHHHcCCCeeechhhh
Confidence                       00     11123333333333334678999999985

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.53  E-value=0.00029  Score=61.97  Aligned_cols=89  Identities=9%  Similarity=0.065  Sum_probs=54.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC------ccccCc--CHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV------SVIIGE--DYQL  280 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~~~~~~--~~~~  280 (394)
                      -.++.|+|.+|+|||||+..+..     ..-..++|++....++...+.. +....+.....      ......  +...
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR   93 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence            45889999999999999999987     1224677888776566655443 33333221000      000111  2234


Q ss_pred             HHHHHHHHccCCeEEEEEeCCCC
Q 016120          281 KKSILRDYLTNKKYFIVLDDVFD  303 (394)
Q Consensus       281 ~~~~l~~~l~~kr~LlVlDdv~~  303 (394)
                      ....+...+..+.-+||+|.+..
T Consensus        94 ~~~~~~~l~~~~~~lliiD~~~~  116 (220)
T 2cvh_A           94 VIGSLKKTVDSNFALVVVDSITA  116 (220)
T ss_dssp             HHHHHHHHCCTTEEEEEEECCCC
T ss_pred             HHHHHHHHhhcCCCEEEEcCcHH
Confidence            45555555544577999999876

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.43  E-value=0.0013  Score=69.42  Aligned_cols=155  Identities=14%  Similarity=0.082  Sum_probs=84.4

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc---cccc-ccCeeEEE-EeCCCCCHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND---HVKF-YFDCLAWV-RVSIAYDFGKMLDDII  261 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~~-~F~~~~wv-~vs~~~~~~~i~~~i~  261 (394)
                      .++||+.++.++.+.|....  ..-+.++|.+|+|||++|+.+.+..   .+.. ...+.+|. +.+.-           
T Consensus       187 ~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l-----------  253 (758)
T 1r6b_X          187 PLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-----------  253 (758)
T ss_dssp             CCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred             CccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----------
Confidence            78999999999999987642  3455789999999999999998721   1111 12333332 11110           


Q ss_pred             HHhCCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCCCc--------hhHH--HHHhhCCCCCCCcEEEEecCC
Q 016120          262 KSVMPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFDNS--------EIWS--DLEELLPDDENGSRVLITVTD  330 (394)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~--------~~~~--~l~~~l~~~~~gs~IivTTR~  330 (394)
                        +.+..     .....+.....+.+.+ ..++.+|++|++.. .        ...+  .+...+.. ..+..+|.+|..
T Consensus       254 --~~~~~-----~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~-l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~  324 (758)
T 1r6b_X          254 --LAGTK-----YRGDFEKRFKALLKQLEQDTNSILFIDEIHT-IIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY  324 (758)
T ss_dssp             ---CCCC-----CSSCHHHHHHHHHHHHSSSSCEEEEETTTTT-TTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECH
T ss_pred             --hcccc-----ccchHHHHHHHHHHHHHhcCCeEEEEechHH-HhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCc
Confidence              00010     1113333333333333 44678999999985 2        1111  22222222 223456666654


Q ss_pred             hHHHhhchh----cCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          331 PDLLASLEM----ENGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       331 ~~v~~~~~~----~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                      +........    ...-..+.     +++.  +.++..+++...
T Consensus       325 ~~~~~~~~~d~aL~~Rf~~i~-----v~~p--~~~e~~~il~~l  361 (758)
T 1r6b_X          325 QEFSNIFEKDRALARRFQKID-----ITEP--SIEETVQIINGL  361 (758)
T ss_dssp             HHHHCCCCCTTSSGGGEEEEE-----CCCC--CHHHHHHHHHHH
T ss_pred             hHHhhhhhcCHHHHhCceEEE-----cCCC--CHHHHHHHHHHH
Confidence            443211100    01123566     9999  999888888654

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.41  E-value=0.0012  Score=69.57  Aligned_cols=157  Identities=15%  Similarity=0.162  Sum_probs=88.9

Q ss_pred             ccceecccHHHHHHHHhc----CC-------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIE----GP-------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~----~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|.++.+++|.+.+.-    .+       ...+-|.++|++|+|||+||+.+++  +...+|   +.|+.+       
T Consensus       205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~~-------  272 (806)
T 3cf2_A          205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGP-------  272 (806)
T ss_dssp             GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEHH-------
T ss_pred             hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEhH-------
Confidence            789999988888877632    11       2356778999999999999999998  444433   333321       


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-C-------chh----HHHHH---hhCCCCCC
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-N-------SEI----WSDLE---ELLPDDEN  320 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~-------~~~----~~~l~---~~l~~~~~  320 (394)
                         ++..   ..      .......+...+.......+++|+||++.. -       .+.    ...+.   ..+.. ..
T Consensus       273 ---~l~s---k~------~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~-~~  339 (806)
T 3cf2_A          273 ---EIMS---KL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RA  339 (806)
T ss_dssp             ---HHHS---SC------TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG-GG
T ss_pred             ---Hhhc---cc------chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc-cC
Confidence               1111   10      011344444444445566789999999975 0       111    12222   22211 22


Q ss_pred             CcEEEEecCChH-HHhhchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120          321 GSRVLITVTDPD-LLASLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP  375 (394)
Q Consensus       321 gs~IivTTR~~~-v~~~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~  375 (394)
                      +--||-||..++ +-..+-. ..-...++     ++..  +.++-.++|+.+....+
T Consensus       340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~-----i~~P--d~~~R~~IL~~~l~~~~  389 (806)
T 3cf2_A          340 HVIVMAATNRPNSIDPALRRFGRFDREVD-----IGIP--DATGRLEILQIHTKNMK  389 (806)
T ss_dssp             CEEEEEECSSTTTSCTTTTSTTSSCEEEE-----CCCC--CHHHHHHHHHHTCSSSE
T ss_pred             CEEEEEecCChhhcCHHHhCCcccceEEe-----cCCC--CHHHHHHHHHHHhcCCC
Confidence            334455665543 2222200 01245667     8877  88888888887665443

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.41  E-value=0.0048  Score=56.60  Aligned_cols=153  Identities=14%  Similarity=0.087  Sum_probs=81.2

Q ss_pred             ccceecccHHHHHHHHhcC------------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHH
Q 016120          187 DINEFERGREELFDLLIEG------------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFG  254 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (394)
                      ++.|.++.+++|.+.+...            ..... +.++|++|+||||||+.++..  ...   ..+++..+.-.+  
T Consensus        11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~--~~~---~~i~i~g~~l~~--   82 (274)
T 2x8a_A           11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE--SGL---NFISVKGPELLN--   82 (274)
T ss_dssp             -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH--TTC---EEEEEETTTTCS--
T ss_pred             HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH--cCC---CEEEEEcHHHHh--
Confidence            7888888887777654311            11223 889999999999999999873  222   234443222110  


Q ss_pred             HHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHH-ccCCeEEEEEeCCCC-C-c----------hhHHHHHhhCCCC--C
Q 016120          255 KMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY-LTNKKYFIVLDDVFD-N-S----------EIWSDLEELLPDD--E  319 (394)
Q Consensus       255 ~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~-~-~----------~~~~~l~~~l~~~--~  319 (394)
                                  ..      ..........+.+. -...++++++|++.. . .          .....+...+..+  .
T Consensus        83 ------------~~------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~  144 (274)
T 2x8a_A           83 ------------MY------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR  144 (274)
T ss_dssp             ------------ST------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred             ------------hh------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence                        00      00111111122222 134578999999975 0 0          1112233333222  2


Q ss_pred             CCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          320 NGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       320 ~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ...-++.+|..+++....-..  .-...+.     ++..  +.++-.++|+....
T Consensus       145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~-----~~~P--~~~~r~~il~~~~~  192 (274)
T 2x8a_A          145 QQVFIMAATNRPDIIDPAILRPGRLDKTLF-----VGLP--PPADRLAILKTITK  192 (274)
T ss_dssp             TCEEEEEEESCGGGSCHHHHSTTSSCEEEE-----CCSC--CHHHHHHHHHHHTT
T ss_pred             CCEEEEeecCChhhCCHhhcCcccCCeEEE-----eCCc--CHHHHHHHHHHHHh
Confidence            234455577766543322111  2355667     8888  88888888887653

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.36  E-value=0.00035  Score=73.73  Aligned_cols=43  Identities=9%  Similarity=0.141  Sum_probs=37.1

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++||+..++++...|....  ..-+.++|++|+|||++|+.+.+
T Consensus       181 ~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~  223 (758)
T 3pxi_A          181 PVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQ  223 (758)
T ss_dssp             CCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHH
T ss_pred             CccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHH
Confidence            79999999999999997643  33467999999999999999987

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.35  E-value=0.00048  Score=64.93  Aligned_cols=153  Identities=14%  Similarity=0.069  Sum_probs=83.4

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      .++|++..++.+...+..+    .-+.++|++|+|||+||+.+.+  .....|   ..+..+.......+.....  ...
T Consensus        28 ~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~--~~~~~~---~~i~~~~~~~~~~l~g~~~--~~~   96 (331)
T 2r44_A           28 VVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK--TMDLDF---HRIQFTPDLLPSDLIGTMI--YNQ   96 (331)
T ss_dssp             TCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH--HTTCCE---EEEECCTTCCHHHHHEEEE--EET
T ss_pred             ceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEecCCCCChhhcCCcee--ecC
Confidence            6889999998888888764    2467899999999999999987  333222   2233333333332211100  000


Q ss_pred             CCCCccccCcCHHHHHHHHHHHccC--CeEEEEEeCCCC-CchhHHHHHhhCCC-----------CCCCcEEEEecCChH
Q 016120          267 PSRVSVIIGEDYQLKKSILRDYLTN--KKYFIVLDDVFD-NSEIWSDLEELLPD-----------DENGSRVLITVTDPD  332 (394)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~-~~~~~~~l~~~l~~-----------~~~gs~IivTTR~~~  332 (394)
                      ...       ..        ..-.+  ...++++|++.. +......+...+..           ......|+.|+....
T Consensus        97 ~~~-------~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~  161 (331)
T 2r44_A           97 HKG-------NF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVE  161 (331)
T ss_dssp             TTT-------EE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTC
T ss_pred             CCC-------ce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCc
Confidence            000       00        00001  125899999987 45444444443321           122344555554221


Q ss_pred             ------HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120          333 ------LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       333 ------v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~  373 (394)
                            +...+- ..-...+.     +++.  +.++-.+++.+..+.
T Consensus       162 ~~~~~~l~~~l~-~Rf~~~i~-----i~~p--~~~~~~~il~~~~~~  200 (331)
T 2r44_A          162 QEGTYPLPEAQV-DRFMMKIH-----LTYL--DKESELEVMRRVSNM  200 (331)
T ss_dssp             CSCCCCCCHHHH-TTSSEEEE-----CCCC--CHHHHHHHHHHHHCT
T ss_pred             ccCcccCCHHHH-hheeEEEE-----cCCC--CHHHHHHHHHhcccc
Confidence                  111110 11123477     9999  999999999887654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.28  E-value=6.6e-05  Score=70.49  Aligned_cols=52  Identities=12%  Similarity=0.089  Sum_probs=33.0

Q ss_pred             cHHHHHHHHhcCCC-CceEEEEEcCCCccHHHHHHHHhcCcccc-cccCeeEEEEe
Q 016120          194 GREELFDLLIEGPS-GLAVVAILDSSGFDKTVFTADTYNNDHVK-FYFDCLAWVRV  247 (394)
Q Consensus       194 ~~~~i~~~L~~~~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~v  247 (394)
                      ..+.+.+++..... ....+.|+|++|+|||+||+.+++  ... ..-..++++++
T Consensus       136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~  189 (308)
T 2qgz_A          136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF  189 (308)
T ss_dssp             HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred             HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence            44455556654322 245778999999999999999998  333 22233455544

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.27  E-value=0.0052  Score=55.33  Aligned_cols=44  Identities=20%  Similarity=0.250  Sum_probs=31.3

Q ss_pred             ccceecccHHHHHHHHhc--C---------CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIE--G---------PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~--~---------~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|.+..+.++.+....  .         ..... +.|+|++|+||||||+.+++
T Consensus        17 ~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           17 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHH
T ss_pred             HhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHH
Confidence            788887766665544321  1         11123 88999999999999999998

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.23  E-value=0.00098  Score=71.23  Aligned_cols=132  Identities=11%  Similarity=0.173  Sum_probs=69.8

Q ss_pred             ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD  259 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~  259 (394)
                      .++|.+..+..+...+...       +.....+.|+|+.|+|||++|+.+.+.  ....-...+.++.+.-... .....
T Consensus       559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~-~~~s~  635 (854)
T 1qvr_A          559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEK-HAVSR  635 (854)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSS-GGGGG
T ss_pred             ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccch-hHHHH
Confidence            5799998888887777532       123457889999999999999999873  2111112234444432211 00000


Q ss_pred             HHHHhCCCCCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCC-----------CCcEEEE
Q 016120          260 IIKSVMPPSRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDE-----------NGSRVLI  326 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~-----------~gs~Iiv  326 (394)
                      +   ++.+..   .... ....+...+..   ...-+|+||++.. +...++.|...+..+.           .++.||+
T Consensus       636 l---~g~~~~---~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~  706 (854)
T 1qvr_A          636 L---IGAPPG---YVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIIL  706 (854)
T ss_dssp             C--------------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEE
T ss_pred             H---cCCCCC---CcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEE
Confidence            0   010000   0000 11122222222   2346899999987 5666677766665331           2445777


Q ss_pred             ecCC
Q 016120          327 TVTD  330 (394)
Q Consensus       327 TTR~  330 (394)
                      ||..
T Consensus       707 tsn~  710 (854)
T 1qvr_A          707 TSNL  710 (854)
T ss_dssp             ECCT
T ss_pred             ecCc
Confidence            7764

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.21  E-value=0.0015  Score=64.51  Aligned_cols=45  Identities=18%  Similarity=0.131  Sum_probs=34.2

Q ss_pred             ccceecccHHHHH---HHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELF---DLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~---~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|.++.++.+.   +.+..+....+-+.++|++|+|||+||+.+.+
T Consensus        38 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~   85 (456)
T 2c9o_A           38 GLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ   85 (456)
T ss_dssp             TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence            8999998877544   44444433345678999999999999999987

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.20  E-value=0.0011  Score=69.76  Aligned_cols=45  Identities=13%  Similarity=0.102  Sum_probs=35.7

Q ss_pred             ccceecccHHHHHHHHhcC-------CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEG-------PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++|.+..++.+...+...       +.....+.++|++|+|||++|+.+.+
T Consensus       459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~  510 (758)
T 1r6b_X          459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK  510 (758)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence            5889988888887776531       12345788999999999999999987

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.19  E-value=0.00055  Score=69.31  Aligned_cols=45  Identities=13%  Similarity=0.250  Sum_probs=34.1

Q ss_pred             ccceecccHHHHHHHHhc----CCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIE----GPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|.+.....+.+.+.-    .......+.++|++|+||||||+.++.
T Consensus        82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A           82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            688888777777554432    122355889999999999999999987

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.12  E-value=0.0013  Score=61.10  Aligned_cols=24  Identities=13%  Similarity=0.137  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ....+.++|++|+|||+||+.+++
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356778899999999999999998

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.09  E-value=0.00048  Score=64.55  Aligned_cols=69  Identities=12%  Similarity=0.069  Sum_probs=45.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEe--CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRV--SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILR  286 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~  286 (394)
                      -+++.|+|++|+|||+||.++...     .-..+.|++.  .+..+.             .       ..+.+.....+.
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~-------~~~le~~l~~i~  177 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y-------NTDFNVFVDDIA  177 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C-------BCCHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h-------hcCHHHHHHHHH
Confidence            346789999999999999999873     1123456666  322110             0       014566666666


Q ss_pred             HHccCCeEEEEEeCCCC
Q 016120          287 DYLTNKKYFIVLDDVFD  303 (394)
Q Consensus       287 ~~l~~kr~LlVlDdv~~  303 (394)
                      +.+...+ +||+|++..
T Consensus       178 ~~l~~~~-LLVIDsI~a  193 (331)
T 2vhj_A          178 RAMLQHR-VIVIDSLKN  193 (331)
T ss_dssp             HHHHHCS-EEEEECCTT
T ss_pred             HHHhhCC-EEEEecccc
Confidence            6665555 999999986

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.07  E-value=0.0019  Score=61.98  Aligned_cols=45  Identities=9%  Similarity=0.079  Sum_probs=34.0

Q ss_pred             ccceecccHHHHHHHHhc----------------------------CCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIE----------------------------GPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~----------------------------~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++|.+..++.+...+..                            .......+.++|++|+|||++|+.+++
T Consensus        22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence            578888888888776620                            011234577999999999999999987

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.06  E-value=0.0025  Score=58.40  Aligned_cols=44  Identities=20%  Similarity=0.250  Sum_probs=32.0

Q ss_pred             ccceecccHHHHHHHHhc--C---------CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIE--G---------PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~--~---------~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|.+..+.++.+....  .         ..... +.|+|++|+||||||+.+++
T Consensus        41 ~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           41 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             GSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHH
T ss_pred             HhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHH
Confidence            889988776666554321  1         11123 88999999999999999998

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.04  E-value=0.0032  Score=62.85  Aligned_cols=152  Identities=13%  Similarity=0.103  Sum_probs=81.8

Q ss_pred             ccceecccHHHHHHHHh---cCC-------CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120          187 DINEFERGREELFDLLI---EGP-------SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~---~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  256 (394)
                      +++|.+..+.++.+...   ...       .-.+-+.|+|++|+|||+||+.+++  .....   .+.++.+.-.     
T Consensus        32 dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~--~~~~~---~i~i~g~~~~-----  101 (499)
T 2dhr_A           32 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVP---FITASGSDFV-----  101 (499)
T ss_dssp             SSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH--HTTCC---EEEEEGGGGT-----
T ss_pred             HcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC---EEEEehhHHH-----
Confidence            89998887776665542   210       1122388999999999999999998  33322   2333322100     


Q ss_pred             HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccC----CeEEEEEeCCCC-C----------ch----hHHHHHhhCCC
Q 016120          257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTN----KKYFIVLDDVFD-N----------SE----IWSDLEELLPD  317 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~----kr~LlVlDdv~~-~----------~~----~~~~l~~~l~~  317 (394)
                               ..         ........+...++.    .+.++++|++.. .          ..    ....+...+..
T Consensus       102 ---------~~---------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg  163 (499)
T 2dhr_A          102 ---------EM---------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG  163 (499)
T ss_dssp             ---------SS---------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred             ---------Hh---------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence                     00         011122333444432    358999999954 0          11    12334333332


Q ss_pred             C--CCCcEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120          318 D--ENGSRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       318 ~--~~gs~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~  373 (394)
                      .  ..+..|+.||..+++....-..  .-...+.     +++.  +.++-.+++..++..
T Consensus       164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~-----i~~P--d~~~R~~IL~~~~~~  216 (499)
T 2dhr_A          164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA-----IDAP--DVKGREQILRIHARG  216 (499)
T ss_dssp             CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEE-----CCCC--CHHHHHHHHHHTTSS
T ss_pred             cccCccEEEEEecCChhhcCcccccccccceEEe-----cCCC--CHHHHHHHHHHHHhc
Confidence            2  2334556677766553211001  1234666     8888  888888888766543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.01  E-value=0.0049  Score=56.01  Aligned_cols=129  Identities=10%  Similarity=0.075  Sum_probs=66.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcc-----c-------cc---cc-CeeEEEEeCC----CCCHH--------------
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDH-----V-------KF---YF-DCLAWVRVSI----AYDFG--------------  254 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~-----~-------~~---~F-~~~~wv~vs~----~~~~~--------------  254 (394)
                      -.+++|+|+.|+|||||.+.++.-..     +       ..   .+ ..+.++.-..    ..++.              
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~  120 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSS  120 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCCh
Confidence            35899999999999999999975211     0       00   00 1123331111    11111              


Q ss_pred             ----HHHHHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEE
Q 016120          255 ----KMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVL  325 (394)
Q Consensus       255 ----~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~Ii  325 (394)
                          .-..++++.++........... +..+. .-.+...|-.++=+|+||.--.  +...-..+...+..- ..|..||
T Consensus       121 ~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii  200 (256)
T 1vpl_A          121 SEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL  200 (256)
T ss_dssp             HHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEE
Confidence                1123445555543221112223 22222 2334445566777899999876  443333333333211 2366799


Q ss_pred             EecCChHHHhhc
Q 016120          326 ITVTDPDLLASL  337 (394)
Q Consensus       326 vTTR~~~v~~~~  337 (394)
                      ++|.+.+.+...
T Consensus       201 ivtHd~~~~~~~  212 (256)
T 1vpl_A          201 VSSHNMLEVEFL  212 (256)
T ss_dssp             EEECCHHHHTTT
T ss_pred             EEcCCHHHHHHH
Confidence            999988776654

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.99  E-value=0.0019  Score=61.52  Aligned_cols=89  Identities=16%  Similarity=0.097  Sum_probs=57.5

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILR  286 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~  286 (394)
                      .-.++.|.|++|+||||||..+...  ....=..++|++....++..     .+..++.......-... +.++....+.
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~--~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~  132 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAE--AQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD  132 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence            3468999999999999999998873  22222346788877776654     45555543221101122 5666666666


Q ss_pred             HHcc-CCeEEEEEeCCCC
Q 016120          287 DYLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       287 ~~l~-~kr~LlVlDdv~~  303 (394)
                      ..++ .+.-++|+|.+..
T Consensus       133 ~l~~~~~~dlvVIDSi~~  150 (356)
T 3hr8_A          133 ELVRSGVVDLIVVDSVAA  150 (356)
T ss_dssp             HHHHTSCCSEEEEECTTT
T ss_pred             HHhhhcCCCeEEehHhhh
Confidence            6554 4566899999866

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.98  E-value=0.0043  Score=56.61  Aligned_cols=124  Identities=12%  Similarity=0.096  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCc-cccc-cc-----------CeeE-EEEeCCCC----CH--------------HHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNND-HVKF-YF-----------DCLA-WVRVSIAY----DF--------------GKML  257 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~-~~~~-~F-----------~~~~-wv~vs~~~----~~--------------~~i~  257 (394)
                      .+++|+|+.|+|||||.+.++.-. .-.. .+           .... ++  .+.+    ++              ..-.
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v--~Q~~~l~~tv~enl~~~~~~~~~~~~~~  108 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNL--PEAYEIGVTVNDIVYLYEELKGLDRDLF  108 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECC--GGGSCTTSBHHHHHHHHHHHTCCCHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEe--CCCCccCCcHHHHHHHhhhhcchHHHHH
Confidence            488999999999999999997521 0000 00           0122 22  2221    11              1223


Q ss_pred             HHHHHHhCCC-CCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChH
Q 016120          258 DDIIKSVMPP-SRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPD  332 (394)
Q Consensus       258 ~~i~~~l~~~-~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~  332 (394)
                      .++++.++.. ......... +..+. .-.+...|..++=+++||.--.  +...-..+...+.....  .||++|.+.+
T Consensus       109 ~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~  186 (263)
T 2pjz_A          109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELD  186 (263)
T ss_dssp             HHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGG
T ss_pred             HHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHH
Confidence            4566666554 221122233 22222 2334445556677899999876  44433444443332222  6888888866


Q ss_pred             HHhhc
Q 016120          333 LLASL  337 (394)
Q Consensus       333 v~~~~  337 (394)
                      .+...
T Consensus       187 ~~~~~  191 (263)
T 2pjz_A          187 MLNLY  191 (263)
T ss_dssp             GGGGC
T ss_pred             HHHHh
Confidence            55444

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.94  E-value=0.0065  Score=55.49  Aligned_cols=127  Identities=14%  Similarity=0.062  Sum_probs=67.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccc-c----------cc------CeeEEEEeCC----CC----------------C
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVK-F----------YF------DCLAWVRVSI----AY----------------D  252 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~----------~F------~~~~wv~vs~----~~----------------~  252 (394)
                      .+++|+|+.|+|||||++.+..-..-. .          ..      ..+.++.-..    ..                .
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~  117 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQ  117 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHH
Confidence            588999999999999999997521100 0          00      0122221111    01                1


Q ss_pred             HHHHHHHHHHHhCCCCCCccccCc---CHHHHHHHHHHHccC------CeEEEEEeCCCC--CchhHHHHHhhCCC--CC
Q 016120          253 FGKMLDDIIKSVMPPSRVSVIIGE---DYQLKKSILRDYLTN------KKYFIVLDDVFD--NSEIWSDLEELLPD--DE  319 (394)
Q Consensus       253 ~~~i~~~i~~~l~~~~~~~~~~~~---~~~~~~~~l~~~l~~------kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~  319 (394)
                      ...-..++++.++...........   ...+.... ...|-.      ++=+|+||.--.  +...-..+...+..  ..
T Consensus       118 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~i-AraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~  196 (266)
T 4g1u_C          118 DRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQL-ARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ  196 (266)
T ss_dssp             HHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHH-HHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHH-HHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc
Confidence            233445666666654332222333   23333333 333443      778899999876  34333334333322  12


Q ss_pred             CCcEEEEecCChHHHhhc
Q 016120          320 NGSRVLITVTDPDLLASL  337 (394)
Q Consensus       320 ~gs~IivTTR~~~v~~~~  337 (394)
                      .|..||++|.+.+.+...
T Consensus       197 ~~~tvi~vtHdl~~~~~~  214 (266)
T 4g1u_C          197 EPLAVCCVLHDLNLAALY  214 (266)
T ss_dssp             SSEEEEEECSCHHHHHHH
T ss_pred             CCCEEEEEEcCHHHHHHh
Confidence            345688888887766544

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.92  E-value=0.0025  Score=56.19  Aligned_cols=117  Identities=11%  Similarity=-0.000  Sum_probs=61.7

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCcc-----------------
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSV-----------------  272 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~-----------------  272 (394)
                      .++.|+|.+|+|||||++.+...  ....=..+.|+....  ....+...+. .++.......                 
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~--~~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAK--GLRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ   98 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH--HHHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH--HHHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence            58899999999999999998852  211112355655433  3444443332 3332211000                 


Q ss_pred             -ccCc-CHHHHHHHHHHHcc-CC--eEEEEEeCCCC----CchhHHHHHhhCCC--CCCCcEEEEecCCh
Q 016120          273 -IIGE-DYQLKKSILRDYLT-NK--KYFIVLDDVFD----NSEIWSDLEELLPD--DENGSRVLITVTDP  331 (394)
Q Consensus       273 -~~~~-~~~~~~~~l~~~l~-~k--r~LlVlDdv~~----~~~~~~~l~~~l~~--~~~gs~IivTTR~~  331 (394)
                       .... +..++...+...+. .+  ..+||+|....    +......+...+..  ...|..||+||...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~  168 (235)
T 2w0m_A           99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA  168 (235)
T ss_dssp             TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred             eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence             0012 44555555555542 23  34999999873    23333333333221  13467889888876

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.92  E-value=0.0032  Score=57.15  Aligned_cols=128  Identities=13%  Similarity=0.153  Sum_probs=66.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCccc-ccc---cCeeEEEEeCC----CCCH----------------------HHHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHV-KFY---FDCLAWVRVSI----AYDF----------------------GKMLDD  259 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~---F~~~~wv~vs~----~~~~----------------------~~i~~~  259 (394)
                      .+++|+|+.|+|||||.+.++.-..- ...   ...+.|+.-..    ..++                      ..-..+
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~  111 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ  111 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence            48899999999999999999763110 000   01122331110    0011                      122344


Q ss_pred             HHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHH
Q 016120          260 IIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDL  333 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v  333 (394)
                      +++.++........... +..+. .-.+...|-.++=+|+||.--.  |...-..+...+..  ...|..||++|.+.+.
T Consensus       112 ~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~  191 (253)
T 2nq2_C          112 ALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ  191 (253)
T ss_dssp             HHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred             HHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            55555543221112223 22222 2334444556677899999876  44433344333322  1226678889998766


Q ss_pred             Hhhc
Q 016120          334 LASL  337 (394)
Q Consensus       334 ~~~~  337 (394)
                      +...
T Consensus       192 ~~~~  195 (253)
T 2nq2_C          192 VVAI  195 (253)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5443

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.88  E-value=0.011  Score=52.43  Aligned_cols=126  Identities=14%  Similarity=0.122  Sum_probs=66.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcc------------ccc-------cc--CeeEEEEeCC----CCCHH----------
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDH------------VKF-------YF--DCLAWVRVSI----AYDFG----------  254 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~-------~F--~~~~wv~vs~----~~~~~----------  254 (394)
                      .+++|+|+.|+|||||.+.+..-..            +..       .+  ..+.++.-..    ..++.          
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~  110 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM  110 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence            4889999999999999999974211            000       00  1123332111    11111          


Q ss_pred             --------HHHHHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCC
Q 016120          255 --------KMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENG  321 (394)
Q Consensus       255 --------~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~g  321 (394)
                              .-..++++.++........... +..+. .-.+...|-.++=+++||.--.  |...-..+...+..- ..|
T Consensus       111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g  190 (224)
T 2pcj_A          111 GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG  190 (224)
T ss_dssp             TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence                    1223455555554322222233 33332 2344455666777999999876  343333333333221 126


Q ss_pred             cEEEEecCChHHHh
Q 016120          322 SRVLITVTDPDLLA  335 (394)
Q Consensus       322 s~IivTTR~~~v~~  335 (394)
                      ..||++|.+.+.+.
T Consensus       191 ~tvi~vtHd~~~~~  204 (224)
T 2pcj_A          191 TSIVMVTHERELAE  204 (224)
T ss_dssp             CEEEEECSCHHHHT
T ss_pred             CEEEEEcCCHHHHH
Confidence            67999999887763

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.85  E-value=0.0036  Score=56.33  Aligned_cols=128  Identities=14%  Similarity=0.059  Sum_probs=66.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcc------------ccc---ccCeeEEEEeC----CCCCH----------------H
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDH------------VKF---YFDCLAWVRVS----IAYDF----------------G  254 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~---~F~~~~wv~vs----~~~~~----------------~  254 (394)
                      .+++|+|+.|+|||||.+.+..-..            +..   ....+.++.-.    ...++                .
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~  104 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERD  104 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHH
Confidence            7899999999999999999975211            000   00011122100    00011                1


Q ss_pred             HHHHHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEec
Q 016120          255 KMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITV  328 (394)
Q Consensus       255 ~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTT  328 (394)
                      .-..++++.++........... +..+. .-.+...|-.++=+++||.--.  +...-..+...+..-  ..|..||++|
T Consensus       105 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vt  184 (240)
T 2onk_A          105 RRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT  184 (240)
T ss_dssp             HHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            2234566666654322222233 33322 2344455566777899999776  343333333333221  1255688888


Q ss_pred             CChHHHhhc
Q 016120          329 TDPDLLASL  337 (394)
Q Consensus       329 R~~~v~~~~  337 (394)
                      .+.+.+...
T Consensus       185 Hd~~~~~~~  193 (240)
T 2onk_A          185 HDLIEAAML  193 (240)
T ss_dssp             SCHHHHHHH
T ss_pred             CCHHHHHHh
Confidence            887655443

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.84  E-value=0.00053  Score=61.08  Aligned_cols=110  Identities=14%  Similarity=-0.010  Sum_probs=62.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRD  287 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~  287 (394)
                      -.++.|+|..|+||||++..+.+  +...+-..++.+.....  .. ....+++.++....   .... ...++.+.+.+
T Consensus        12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~---~~~~~~~~~i~~~i~~   83 (223)
T 2b8t_A           12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLP---SVEVESAPEILNYIMS   83 (223)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSC---CEEESSTHHHHHHHHS
T ss_pred             cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCcc---ccccCCHHHHHHHHHH
Confidence            46888899999999999987776  33333222333332221  11 12234444443322   1112 44556666666


Q ss_pred             HccCCeE-EEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecC
Q 016120          288 YLTNKKY-FIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVT  329 (394)
Q Consensus       288 ~l~~kr~-LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR  329 (394)
                      .+.+.++ +||+|.+.. +.+..+.+.. +.+  .|-.||+|-+
T Consensus        84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl  124 (223)
T 2b8t_A           84 NSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGL  124 (223)
T ss_dssp             TTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECC
T ss_pred             HhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEec
Confidence            5554444 999999986 3444444433 222  2678999988

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.82  E-value=0.009  Score=51.03  Aligned_cols=68  Identities=12%  Similarity=0.216  Sum_probs=40.7

Q ss_pred             ccCCeEEEEEeCCC--C--CchhHHHHHhhCCCCCCCcEEEEec---CChHHHhhchhcCCCceeeCCccCCCCCCCChH
Q 016120          289 LTNKKYFIVLDDVF--D--NSEIWSDLEELLPDDENGSRVLITV---TDPDLLASLEMENGEKIRRDSVLFGGPLIRLKH  361 (394)
Q Consensus       289 l~~kr~LlVlDdv~--~--~~~~~~~l~~~l~~~~~gs~IivTT---R~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~  361 (394)
                      +..++-+++||.+.  +  +....+.+...+..  .+..+|++|   .+...+..++......++.     +...  +.+
T Consensus        96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~-----~~~~--~r~  166 (178)
T 1ye8_A           96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIE-----LTPE--NRD  166 (178)
T ss_dssp             HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEE-----CCTT--TTT
T ss_pred             cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEE-----ecCc--CHH
Confidence            55667799999953  2  33344555555544  344466666   3555555554333357888     8888  766


Q ss_pred             HHHH
Q 016120          362 EAWQ  365 (394)
Q Consensus       362 ~~~~  365 (394)
                      +...
T Consensus       167 ~~~~  170 (178)
T 1ye8_A          167 VILE  170 (178)
T ss_dssp             THHH
T ss_pred             HHHH
Confidence            5544

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.81  E-value=0.034  Score=49.42  Aligned_cols=53  Identities=11%  Similarity=0.083  Sum_probs=34.3

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhh-CCCCCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEEL-LPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~-l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...|-.++-+++||.--.  +...-..+... +.....|..||++|.+.+.+..+
T Consensus       141 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~  196 (229)
T 2pze_A          141 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA  196 (229)
T ss_dssp             HHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHC
T ss_pred             HHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhC
Confidence            3444555677899999877  55555666654 33333466788899887766544

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.81  E-value=0.0056  Score=57.14  Aligned_cols=87  Identities=7%  Similarity=0.027  Sum_probs=56.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccc--cCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHH-HHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFY--FDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSIL  285 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l  285 (394)
                      .++-|.|++|+||||||.++...  ....  =..++||+....++..     .+++++.....---... +.++. ...+
T Consensus        29 GiteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~  101 (333)
T 3io5_A           29 GLLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV  101 (333)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence            37889999999999999887763  3222  2467899888887764     36777665321100111 45555 4443


Q ss_pred             HHH--c-cCCeEEEEEeCCCC
Q 016120          286 RDY--L-TNKKYFIVLDDVFD  303 (394)
Q Consensus       286 ~~~--l-~~kr~LlVlDdv~~  303 (394)
                      ...  + +++.-|+|+|-|..
T Consensus       102 ~~l~~i~~~~~~lvVIDSI~a  122 (333)
T 3io5_A          102 NQLDAIERGEKVVVFIDSLGN  122 (333)
T ss_dssp             HHHHTCCTTCCEEEEEECSTT
T ss_pred             HHHHHhhccCceEEEEecccc
Confidence            333  3 45788999999976

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.80  E-value=0.0014  Score=55.56  Aligned_cols=54  Identities=7%  Similarity=0.068  Sum_probs=35.1

Q ss_pred             HHHHHccCCeEEEEEeCCCC--Cch----------------hHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSE----------------IWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~----------------~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...+..++-+++||.-..  +..                ....+...+... ..|..||++|.+.+.+..+
T Consensus        93 ~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~  165 (171)
T 4gp7_A           93 EMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV  165 (171)
T ss_dssp             HHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred             HHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence            45556677888999998654  222                335556665542 3466788888888766654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.79  E-value=0.0096  Score=54.26  Aligned_cols=54  Identities=7%  Similarity=0.246  Sum_probs=32.4

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...|-.++=+|+||.--.  |...-..+...+.. ...|..||++|.+.+.+...
T Consensus       169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~  225 (263)
T 2olj_A          169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREV  225 (263)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHh
Confidence            34445566677899999876  33333333333321 12266799999987766544

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.76  E-value=0.0026  Score=56.22  Aligned_cols=127  Identities=15%  Similarity=0.103  Sum_probs=65.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccc-c--cc---------CeeEEEEeCC----CCCH----------------HHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVK-F--YF---------DCLAWVRVSI----AYDF----------------GKML  257 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~--~F---------~~~~wv~vs~----~~~~----------------~~i~  257 (394)
                      .+++|+|+.|+|||||.+.++.-..-. .  .|         ..+.++.-..    ..++                ..-.
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~  115 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI  115 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH
Confidence            478999999999999999997521100 0  01         1123332111    1111                1223


Q ss_pred             HHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChH
Q 016120          258 DDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPD  332 (394)
Q Consensus       258 ~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~  332 (394)
                      .++++.++.... ...... +..+. .-.+...|-.++=+++||.--.  +...-..+...+... ..|..||++|.+.+
T Consensus       116 ~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~  194 (214)
T 1sgw_A          116 MDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL  194 (214)
T ss_dssp             HHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred             HHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            445556654432 222233 33222 2334455666777899999876  343333333333221 12556888888765


Q ss_pred             HHhhc
Q 016120          333 LLASL  337 (394)
Q Consensus       333 v~~~~  337 (394)
                      .+..+
T Consensus       195 ~~~~~  199 (214)
T 1sgw_A          195 SYCDV  199 (214)
T ss_dssp             TTSSE
T ss_pred             HHHHh
Confidence            44433

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.76  E-value=0.0096  Score=53.26  Aligned_cols=54  Identities=20%  Similarity=0.199  Sum_probs=33.1

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...|-.++=+|+||.--.  +...-..+...+..-  ..|..||++|.+.+++..+
T Consensus       155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~  212 (235)
T 3tif_A          155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFG  212 (235)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTS
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhC
Confidence            34444556677899999876  343334444333321  2367799999998876533

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.75  E-value=0.0057  Score=55.32  Aligned_cols=22  Identities=14%  Similarity=0.298  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.+..
T Consensus        27 e~~~liG~NGsGKSTLlk~l~G   48 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAG   48 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            4789999999999999999875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.72  E-value=0.013  Score=52.45  Aligned_cols=51  Identities=8%  Similarity=0.089  Sum_probs=32.1

Q ss_pred             HHHccCCeEEEEEeCCCC--CchhHHHHHhhCC---CCCCCcEEEEecCChHHHhh
Q 016120          286 RDYLTNKKYFIVLDDVFD--NSEIWSDLEELLP---DDENGSRVLITVTDPDLLAS  336 (394)
Q Consensus       286 ~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~---~~~~gs~IivTTR~~~v~~~  336 (394)
                      ...|-.++=+++||+--.  +...-..+...+.   ....|..||++|.+.+.+..
T Consensus       139 AraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~  194 (237)
T 2cbz_A          139 ARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQ  194 (237)
T ss_dssp             HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGG
T ss_pred             HHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHh
Confidence            334445666889999877  4555556666552   22346678888887665543

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.71  E-value=0.004  Score=59.25  Aligned_cols=88  Identities=16%  Similarity=0.063  Sum_probs=55.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRD  287 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~  287 (394)
                      -.++.|.|.+|+||||||..+...  ....=..++|++....++..     .+..++.......-.+. +.++....+..
T Consensus        61 G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~  133 (349)
T 2zr9_A           61 GRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM  133 (349)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence            458899999999999999988763  22222457899888776653     24455533211000112 55666666655


Q ss_pred             Hcc-CCeEEEEEeCCCC
Q 016120          288 YLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       288 ~l~-~kr~LlVlDdv~~  303 (394)
                      ..+ .+.-+||+|.+..
T Consensus       134 l~~~~~~~lIVIDsl~~  150 (349)
T 2zr9_A          134 LVRSGALDIIVIDSVAA  150 (349)
T ss_dssp             HHTTTCCSEEEEECGGG
T ss_pred             HHhcCCCCEEEEcChHh
Confidence            554 4567999999865

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.71  E-value=0.0056  Score=56.24  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.+..
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            5889999999999999999964

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.70  E-value=0.011  Score=56.41  Aligned_cols=129  Identities=10%  Similarity=0.118  Sum_probs=69.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCccc------------cc-------cc-CeeEEEEeCC----CCCH-----------
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHV------------KF-------YF-DCLAWVRVSI----AYDF-----------  253 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~------------~~-------~F-~~~~wv~vs~----~~~~-----------  253 (394)
                      -.+++|+|+.|+|||||.+.+..-..-            ..       .+ ..+.+|.-..    ..++           
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~  133 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD  133 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS
T ss_pred             CCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc
Confidence            358999999999999999999642110            00       00 1123331111    1111           


Q ss_pred             -------HHHHHHHHHHhCCCCCCccccCc-CHHH-HHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCC
Q 016120          254 -------GKMLDDIIKSVMPPSRVSVIIGE-DYQL-KKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DEN  320 (394)
Q Consensus       254 -------~~i~~~i~~~l~~~~~~~~~~~~-~~~~-~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~  320 (394)
                             .+-..++++.++........... +-.+ ..-.+...|..++=+|++|.--.  +...-..+...+..  ...
T Consensus       134 ~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~  213 (366)
T 3tui_C          134 NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL  213 (366)
T ss_dssp             CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC
Confidence                   11234455555554322122233 3222 23345556677788999999876  44333444433332  123


Q ss_pred             CcEEEEecCChHHHhhc
Q 016120          321 GSRVLITVTDPDLLASL  337 (394)
Q Consensus       321 gs~IivTTR~~~v~~~~  337 (394)
                      |..||++|.+.+++..+
T Consensus       214 g~Tii~vTHdl~~~~~~  230 (366)
T 3tui_C          214 GLTILLITHEMDVVKRI  230 (366)
T ss_dssp             CCEEEEEESCHHHHHHH
T ss_pred             CCEEEEEecCHHHHHHh
Confidence            67789999988776654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.69  E-value=0.0069  Score=55.29  Aligned_cols=54  Identities=15%  Similarity=0.230  Sum_probs=32.1

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhc
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~  337 (394)
                      .+...|-.++=+|+||.--.  |...-..+...+..- ..|..||++|.+.+.+...
T Consensus       148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~  204 (266)
T 2yz2_A          148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINH  204 (266)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGG
T ss_pred             HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence            34445566777899999877  444334444333221 1266788888886655543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.68  E-value=0.0089  Score=56.79  Aligned_cols=126  Identities=17%  Similarity=0.144  Sum_probs=67.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccc-c--ccC------------eeEEEEeCCCC------CHH--------------
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVK-F--YFD------------CLAWVRVSIAY------DFG--------------  254 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~--~F~------------~~~wv~vs~~~------~~~--------------  254 (394)
                      .+++|+|+.|+|||||.+.+..-..-. .  .|+            .+.+|  .+++      ++.              
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v--~Q~~~l~~~ltv~enl~~~~~~~~~~~  104 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV--YQNYSLFPHMNVKKNLEFGMRMKKIKD  104 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE--CTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred             CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE--ecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence            588999999999999999997521100 0  010            11222  1211      111              


Q ss_pred             -HHHHHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEe
Q 016120          255 -KMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLIT  327 (394)
Q Consensus       255 -~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivT  327 (394)
                       .-..++++.++........... +-.+. .-.+...|-.++=+|+||.--.  |...-..+...+..  ...|..||++
T Consensus       105 ~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~v  184 (348)
T 3d31_A          105 PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI  184 (348)
T ss_dssp             HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence             2234566666654332222233 33322 3345556667788999999766  33332333333321  1236678888


Q ss_pred             cCChHHHhhc
Q 016120          328 VTDPDLLASL  337 (394)
Q Consensus       328 TR~~~v~~~~  337 (394)
                      |.+.+.+..+
T Consensus       185 THd~~~~~~~  194 (348)
T 3d31_A          185 THDQTEARIM  194 (348)
T ss_dssp             ESCHHHHHHH
T ss_pred             eCCHHHHHHh
Confidence            8887765544

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.67  E-value=0.0064  Score=53.99  Aligned_cols=94  Identities=3%  Similarity=-0.049  Sum_probs=54.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCccccc----ccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCC----CccccCc-CHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKF----YFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSR----VSVIIGE-DYQ  279 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~----~~~~~~~-~~~  279 (394)
                      -.++.|+|++|+|||||+..+........    .-..++|++....+....+ ..++..++....    ...-... +..
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~  102 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD  102 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence            45889999999999999999876311111    1246788887765555443 344455543210    0000011 222


Q ss_pred             ---HHHHHHHHHcc-CCeEEEEEeCCCC
Q 016120          280 ---LKKSILRDYLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       280 ---~~~~~l~~~l~-~kr~LlVlDdv~~  303 (394)
                         .....+.+.+. .+.-+||||.+..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~  130 (243)
T 1n0w_A          103 HQTQLLYQASAMMVESRYALLIVDSATA  130 (243)
T ss_dssp             HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred             HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence               23334555553 4678999999876

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.67  E-value=0.0052  Score=57.78  Aligned_cols=94  Identities=12%  Similarity=0.088  Sum_probs=57.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccc----cCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC----ccccCc-CHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFY----FDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV----SVIIGE-DYQ  279 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----~~~~~~-~~~  279 (394)
                      -.++.|+|.+|+||||||..++........    -..++|++....++...+. +++..++.....    ..-.+. +.+
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~  185 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD  185 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence            458899999999999999988763211111    2467899888877776655 345555443210    000011 222


Q ss_pred             ---HHHHHHHHHcc--CCeEEEEEeCCCC
Q 016120          280 ---LKKSILRDYLT--NKKYFIVLDDVFD  303 (394)
Q Consensus       280 ---~~~~~l~~~l~--~kr~LlVlDdv~~  303 (394)
                         .+...+...++  .+.-+||+|.+..
T Consensus       186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~  214 (324)
T 2z43_A          186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS  214 (324)
T ss_dssp             HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred             HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence               34455555553  4677999999875

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.61  E-value=0.011  Score=53.17  Aligned_cols=22  Identities=18%  Similarity=0.299  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.++.
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~G   54 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4899999999999999999975

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.56  E-value=0.0092  Score=56.81  Aligned_cols=128  Identities=15%  Similarity=0.160  Sum_probs=66.9

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcc------------ccc---ccCeeEEEEeC----CCCCH-----------------
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDH------------VKF---YFDCLAWVRVS----IAYDF-----------------  253 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~---~F~~~~wv~vs----~~~~~-----------------  253 (394)
                      .+++|+|+.|+|||||.+.++.-..            +..   .-..+.+|.-.    ...++                 
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~  121 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDE  121 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence            5889999999999999999974211            000   00112233111    11111                 


Q ss_pred             -HHHHHHHHHHhCCCCCCccccCc-CHHH-HHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEE
Q 016120          254 -GKMLDDIIKSVMPPSRVSVIIGE-DYQL-KKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLI  326 (394)
Q Consensus       254 -~~i~~~i~~~l~~~~~~~~~~~~-~~~~-~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~Iiv  326 (394)
                       .+-..++++.++........... +-.+ ..-.+...|-.++=+|+||.--.  |...-..+...+..-  ..|..||+
T Consensus       122 ~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~  201 (355)
T 1z47_A          122 MDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF  201 (355)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence             12234556666553221112233 2222 23344555666777999999776  333323333332211  22567888


Q ss_pred             ecCChHHHhhc
Q 016120          327 TVTDPDLLASL  337 (394)
Q Consensus       327 TTR~~~v~~~~  337 (394)
                      +|.+.+.+..+
T Consensus       202 vTHd~~~a~~~  212 (355)
T 1z47_A          202 VTHDQEEALEV  212 (355)
T ss_dssp             ECSCHHHHHHH
T ss_pred             ECCCHHHHHHh
Confidence            99988766555

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.55  E-value=0.0066  Score=58.11  Aligned_cols=88  Identities=11%  Similarity=0.027  Sum_probs=56.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRD  287 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~  287 (394)
                      -.++.|.|.+|+||||||..+...  ....-..++|++....++..     .+..++.......-.+. +.+++...+..
T Consensus        74 G~li~I~G~pGsGKTtlal~la~~--~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~  146 (366)
T 1xp8_A           74 GRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL  146 (366)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHH--HHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence            457888999999999999888763  22222467899888777654     24445443210000112 56667777766


Q ss_pred             Hcc-CCeEEEEEeCCCC
Q 016120          288 YLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       288 ~l~-~kr~LlVlDdv~~  303 (394)
                      ..+ +..-+||+|.+..
T Consensus       147 l~~~~~~~lVVIDsl~~  163 (366)
T 1xp8_A          147 LVRSGAIDVVVVDSVAA  163 (366)
T ss_dssp             HHTTTCCSEEEEECTTT
T ss_pred             HHhcCCCCEEEEeChHH
Confidence            664 3456999999865

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.54  E-value=0.02  Score=52.34  Aligned_cols=53  Identities=19%  Similarity=0.223  Sum_probs=32.5

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhh
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLAS  336 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~  336 (394)
                      .+...|-.++=+|+||.--.  +...-..+...+...  ..|..||++|.+.+.+..
T Consensus       166 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~  222 (271)
T 2ixe_A          166 ALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER  222 (271)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT
T ss_pred             HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh
Confidence            34444556677899999876  444434444433322  236678888988776654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.54  E-value=0.0056  Score=58.40  Aligned_cols=88  Identities=15%  Similarity=-0.001  Sum_probs=54.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRD  287 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~  287 (394)
                      -.++.|.|.+|+||||||..+...  ....-..++|++....++...     +..++.......-.+. +.+++...+..
T Consensus        63 G~ii~I~G~pGsGKTtLal~la~~--~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~  135 (356)
T 1u94_A           63 GRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA  135 (356)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence            458899999999999999888763  222223678998887776442     4455433210000111 45555555554


Q ss_pred             Hcc-CCeEEEEEeCCCC
Q 016120          288 YLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       288 ~l~-~kr~LlVlDdv~~  303 (394)
                      ..+ .+.-+||+|.+..
T Consensus       136 l~~~~~~~lVVIDsl~~  152 (356)
T 1u94_A          136 LARSGAVDVIVVDSVAA  152 (356)
T ss_dssp             HHHHTCCSEEEEECGGG
T ss_pred             HHhccCCCEEEEcCHHH
Confidence            442 4556999999865

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=96.52  E-value=0.0021  Score=55.79  Aligned_cols=117  Identities=12%  Similarity=-0.012  Sum_probs=60.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC---CCCHHHHHHHHHHHhC-------CCCC-Ccccc--C
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI---AYDFGKMLDDIIKSVM-------PPSR-VSVII--G  275 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~i~~~i~~~l~-------~~~~-~~~~~--~  275 (394)
                      ...|-|++-.|.||||.|-.+.-  +.-.+=-.+..+..-+   ......++    ..++       .... ..++.  +
T Consensus        28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~  101 (196)
T 1g5t_A           28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREAD  101 (196)
T ss_dssp             CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHH
Confidence            34566677777999999977654  2222222233332222   22233333    3331       0000 00000  0


Q ss_pred             c-CHHHHHHHHHHHccCCe-EEEEEeCCCC----CchhHHHHHhhCCCCCCCcEEEEecCCh
Q 016120          276 E-DYQLKKSILRDYLTNKK-YFIVLDDVFD----NSEIWSDLEELLPDDENGSRVLITVTDP  331 (394)
Q Consensus       276 ~-~~~~~~~~l~~~l~~kr-~LlVlDdv~~----~~~~~~~l~~~l~~~~~gs~IivTTR~~  331 (394)
                      . .........++.+.+.+ =|||||++-.    ..-..+.+...+.....+..||+|+|+.
T Consensus       102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a  163 (196)
T 1g5t_A          102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC  163 (196)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred             HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence            1 22334455556665544 4999999843    1233455666665556667899999985

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.50  E-value=0.002  Score=56.39  Aligned_cols=38  Identities=16%  Similarity=0.168  Sum_probs=28.7

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..++|.+.+....+.-.+++|+|+.|+|||||++.+..
T Consensus         7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A            7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34555565554333467999999999999999999876

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.45  E-value=0.018  Score=54.99  Aligned_cols=129  Identities=12%  Similarity=0.064  Sum_probs=66.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcc------------ccc---ccCeeEEEEeCC----CCCH----------------
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDH------------VKF---YFDCLAWVRVSI----AYDF----------------  253 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~---~F~~~~wv~vs~----~~~~----------------  253 (394)
                      -.+++|+|+.|+|||||.+.++.-..            +..   .-..+.+|.-..    ..++                
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~  108 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPRE  108 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHH
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence            35889999999999999999975211            000   001123331111    1111                


Q ss_pred             --HHHHHHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEE
Q 016120          254 --GKMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVL  325 (394)
Q Consensus       254 --~~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~Ii  325 (394)
                        .+-..++++.++........... +-.+. .-.+...|-.++=+|+||.--.  |...-..+...+..-  ..|..||
T Consensus       109 ~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi  188 (362)
T 2it1_A          109 EIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTV  188 (362)
T ss_dssp             HHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence              11234556666654322222233 33222 2345555666777899998655  333223333332211  2256788


Q ss_pred             EecCChHHHhhc
Q 016120          326 ITVTDPDLLASL  337 (394)
Q Consensus       326 vTTR~~~v~~~~  337 (394)
                      ++|.+.+.+..+
T Consensus       189 ~vTHd~~~a~~~  200 (362)
T 2it1_A          189 YVTHDQAEALAM  200 (362)
T ss_dssp             EEESCHHHHHHH
T ss_pred             EECCCHHHHHHh
Confidence            888887766544

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.45  E-value=0.0098  Score=54.16  Aligned_cols=23  Identities=30%  Similarity=0.286  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999999974

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.44  E-value=0.0079  Score=56.36  Aligned_cols=95  Identities=11%  Similarity=0.113  Sum_probs=58.1

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCccccc---------cc-----CeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC---
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKF---------YF-----DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV---  270 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~---  270 (394)
                      .-.++.|.|.+|+|||+||..++.......         ..     ..++|++....++..++.. ++..++.....   
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~  175 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD  175 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence            346889999999999999988875321111         11     3678998888877776653 45555543110   


Q ss_pred             -ccccCc-CHH---HHHHHHHHHcc--CCeEEEEEeCCCC
Q 016120          271 -SVIIGE-DYQ---LKKSILRDYLT--NKKYFIVLDDVFD  303 (394)
Q Consensus       271 -~~~~~~-~~~---~~~~~l~~~l~--~kr~LlVlDdv~~  303 (394)
                       ..-.+. +.+   .+...+...++  .+.-+||+|.+..
T Consensus       176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~  215 (322)
T 2i1q_A          176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS  215 (322)
T ss_dssp             TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence             000011 222   34555666664  3567999999865

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.40  E-value=0.023  Score=53.75  Aligned_cols=95  Identities=6%  Similarity=0.032  Sum_probs=57.7

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCccccc----ccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------ccccCc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKF----YFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV-------SVIIGE  276 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------~~~~~~  276 (394)
                      .-.++.|+|.+|+||||||..++.......    .-..++|++....++...+. +++..++.....       ....+.
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~  199 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS  199 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence            456889999999999999998876322211    12467899888877776654 344555432100       000111


Q ss_pred             -CHHHHHHHHHHHcc---CCeEEEEEeCCCC
Q 016120          277 -DYQLKKSILRDYLT---NKKYFIVLDDVFD  303 (394)
Q Consensus       277 -~~~~~~~~l~~~l~---~kr~LlVlDdv~~  303 (394)
                       ....+...+...++   .+.-+||+|.+..
T Consensus       200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~  230 (343)
T 1v5w_A          200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA  230 (343)
T ss_dssp             THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred             HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence             22234444555553   5667999999875

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.38  E-value=0.003  Score=54.96  Aligned_cols=41  Identities=17%  Similarity=0.110  Sum_probs=32.6

Q ss_pred             ecccHHHHHHHHhcCC-CCceEEEEEcCCCccHHHHHHHHhc
Q 016120          191 FERGREELFDLLIEGP-SGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       191 r~~~~~~i~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      |+..++++.+.+.... ....+++|+|..|+||||+++.+..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A            3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4556777888777542 3467999999999999999999876

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.38  E-value=0.016  Score=55.71  Aligned_cols=128  Identities=9%  Similarity=0.081  Sum_probs=65.7

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCccc------------c---cccCeeEEEEeCC----CCCH-----------------
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHV------------K---FYFDCLAWVRVSI----AYDF-----------------  253 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~------------~---~~F~~~~wv~vs~----~~~~-----------------  253 (394)
                      .+++|+|+.|+|||||.+.+..-..-            .   ..-..+.+|.-..    ..++                 
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~  109 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV  109 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHH
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHH
Confidence            58899999999999999999752110            0   0001122331111    1111                 


Q ss_pred             -HHHHHHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEE
Q 016120          254 -GKMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLI  326 (394)
Q Consensus       254 -~~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~Iiv  326 (394)
                       .+-..++++.++........... +-.+. .-.+...|..++=+|+||.--.  +...-..+...+..-  ..|..||+
T Consensus       110 ~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~  189 (381)
T 3rlf_A          110 INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY  189 (381)
T ss_dssp             HHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred             HHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence             12234556665554322222223 22222 2334444555667899999766  333333333333221  23667888


Q ss_pred             ecCChHHHhhc
Q 016120          327 TVTDPDLLASL  337 (394)
Q Consensus       327 TTR~~~v~~~~  337 (394)
                      +|.+...+..+
T Consensus       190 vTHd~~ea~~~  200 (381)
T 3rlf_A          190 VTHDQVEAMTL  200 (381)
T ss_dssp             ECSCHHHHHHH
T ss_pred             EECCHHHHHHh
Confidence            88887666554

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.34  E-value=0.05  Score=49.54  Aligned_cols=52  Identities=8%  Similarity=0.074  Sum_probs=31.9

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhh
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLAS  336 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~  336 (394)
                      +...|-.++=+|+||.--.  |...-..+...+... ..|..||++|.+.+.+..
T Consensus       175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~  229 (267)
T 2zu0_C          175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDY  229 (267)
T ss_dssp             HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGT
T ss_pred             HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHh
Confidence            3344445667899999877  444444444443322 346779999998776554

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.34  E-value=0.0018  Score=61.20  Aligned_cols=45  Identities=18%  Similarity=0.100  Sum_probs=35.1

Q ss_pred             ccceecccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|.+..++.+...+...   +.....+.++|++|+||||||+.+++
T Consensus        26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred             HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            7888887777776665432   22346788999999999999999998

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.33  E-value=0.032  Score=53.06  Aligned_cols=128  Identities=13%  Similarity=0.137  Sum_probs=67.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcc------------cc---cc----cCeeEEEEeCC----CCC--------------
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDH------------VK---FY----FDCLAWVRVSI----AYD--------------  252 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~------------~~---~~----F~~~~wv~vs~----~~~--------------  252 (394)
                      .+++|+|+.|+|||||.+.+..-..            +.   ..    -..+.+|.-..    ..+              
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~  110 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG  110 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC
Confidence            5889999999999999999975211            00   00    01122331110    001              


Q ss_pred             ----HHHHHHHHHHHhCCCCCCccccCc-CHHH-HHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCc
Q 016120          253 ----FGKMLDDIIKSVMPPSRVSVIIGE-DYQL-KKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGS  322 (394)
Q Consensus       253 ----~~~i~~~i~~~l~~~~~~~~~~~~-~~~~-~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs  322 (394)
                          ..+-..++++.++........... +-.+ ..-.+...|-.++=+|+||.--.  +...-..+...+..  ...|.
T Consensus       111 ~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~  190 (359)
T 3fvq_A          111 RTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGK  190 (359)
T ss_dssp             CSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC
Confidence                122345566666554322222233 2222 23344555666777899999766  33322333222211  13467


Q ss_pred             EEEEecCChHHHhhc
Q 016120          323 RVLITVTDPDLLASL  337 (394)
Q Consensus       323 ~IivTTR~~~v~~~~  337 (394)
                      .||++|.+...+..+
T Consensus       191 tvi~vTHd~~ea~~~  205 (359)
T 3fvq_A          191 SAVFVSHDREEALQY  205 (359)
T ss_dssp             EEEEECCCHHHHHHH
T ss_pred             EEEEEeCCHHHHHHH
Confidence            789999988766655

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.32  E-value=0.019  Score=54.76  Aligned_cols=129  Identities=13%  Similarity=0.102  Sum_probs=66.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcc------------ccc---ccCeeEEEEeCC----CCCH----------------
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDH------------VKF---YFDCLAWVRVSI----AYDF----------------  253 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~---~F~~~~wv~vs~----~~~~----------------  253 (394)
                      -.+++|+|+.|+|||||.+.+..-..            +..   .-..+.+|.-..    ..++                
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~  108 (359)
T 2yyz_A           29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKD  108 (359)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHH
T ss_pred             CCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence            35889999999999999999975211            000   001122331110    1111                


Q ss_pred             --HHHHHHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEE
Q 016120          254 --GKMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVL  325 (394)
Q Consensus       254 --~~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~Ii  325 (394)
                        ..-..++++.++........... +-.+. .-.+...|-.++=+|+||.--.  |...-..+...+..  ...|..||
T Consensus       109 ~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi  188 (359)
T 2yyz_A          109 EVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSV  188 (359)
T ss_dssp             HTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred             HHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence              11234566666553221112223 22222 2345555666777899999766  33322333332221  12256788


Q ss_pred             EecCChHHHhhc
Q 016120          326 ITVTDPDLLASL  337 (394)
Q Consensus       326 vTTR~~~v~~~~  337 (394)
                      ++|.+.+.+..+
T Consensus       189 ~vTHd~~~~~~~  200 (359)
T 2yyz_A          189 YVTHDQAEAMTM  200 (359)
T ss_dssp             EEESCHHHHHHH
T ss_pred             EEcCCHHHHHHh
Confidence            888887766554

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.24  E-value=0.017  Score=55.31  Aligned_cols=128  Identities=9%  Similarity=0.046  Sum_probs=65.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcc------------ccc---ccCeeEEEEeC----CC---------------CCH-
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDH------------VKF---YFDCLAWVRVS----IA---------------YDF-  253 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~---~F~~~~wv~vs----~~---------------~~~-  253 (394)
                      -.+++|+|+.|+|||||.+.+..-..            +..   +-..+.+|.-.    ..               ... 
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~  116 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD  116 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHH
Confidence            35889999999999999999974211            000   00012222110    00               011 


Q ss_pred             --HHHHHHHHHHhCCCCCCcc---ccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEE
Q 016120          254 --GKMLDDIIKSVMPPSRVSV---IIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRV  324 (394)
Q Consensus       254 --~~i~~~i~~~l~~~~~~~~---~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~I  324 (394)
                        ..-..++++.++.......   .++....+.. .+...|-.++=+|+||.--.  |...-..+...+..-  ..|..|
T Consensus       117 ~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRv-alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tv  195 (372)
T 1v43_A          117 EIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRV-AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT  195 (372)
T ss_dssp             HHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHH-HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHH-HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence              1234556666655322111   2222333333 34455556677899999766  333323333333211  225678


Q ss_pred             EEecCChHHHhhc
Q 016120          325 LITVTDPDLLASL  337 (394)
Q Consensus       325 ivTTR~~~v~~~~  337 (394)
                      |++|.+...+..+
T Consensus       196 i~vTHd~~~a~~~  208 (372)
T 1v43_A          196 IYVTHDQVEAMTM  208 (372)
T ss_dssp             EEEESCHHHHHHH
T ss_pred             EEEeCCHHHHHHh
Confidence            8888887766554

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.23  E-value=0.083  Score=48.72  Aligned_cols=53  Identities=11%  Similarity=0.063  Sum_probs=33.9

Q ss_pred             HHHHccCCeEEEEEeCCCC--CchhHHHHHhhC-CCCCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKKYFIVLDDVFD--NSEIWSDLEELL-PDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l-~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...|-.++=+++||.--.  +...-..+...+ .....|..||++|.+.+.+..+
T Consensus       170 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~  225 (290)
T 2bbs_A          170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA  225 (290)
T ss_dssp             HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHS
T ss_pred             HHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcC
Confidence            3444555667899999877  555555565543 2333466789999987766544

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.15  E-value=0.0025  Score=53.34  Aligned_cols=20  Identities=25%  Similarity=0.257  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCccHHHHHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADT  229 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v  229 (394)
                      .+|.|+|++|+||||+|+.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.13  E-value=0.026  Score=53.64  Aligned_cols=128  Identities=18%  Similarity=0.184  Sum_probs=67.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcc------------ccc-------cc-CeeEEEEeCC----CCCH------------
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDH------------VKF-------YF-DCLAWVRVSI----AYDF------------  253 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~-------~F-~~~~wv~vs~----~~~~------------  253 (394)
                      .+++|+|+.|+|||||.+.++.-..            +..       .. ..+.+|.-..    ..++            
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~  111 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK  111 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence            5889999999999999999974211            000       00 1122331111    1111            


Q ss_pred             ------HHHHHHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCC
Q 016120          254 ------GKMLDDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENG  321 (394)
Q Consensus       254 ------~~i~~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~g  321 (394)
                            .+-..++++.++........... +-.+. .-.+...|-.++=+|+||.--.  |...-..+...+..-  ..|
T Consensus       112 ~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g  191 (353)
T 1oxx_K          112 MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG  191 (353)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence                  12344566666554321122233 32222 3345555667778999999766  333333333333221  225


Q ss_pred             cEEEEecCChHHHhhc
Q 016120          322 SRVLITVTDPDLLASL  337 (394)
Q Consensus       322 s~IivTTR~~~v~~~~  337 (394)
                      ..||++|.+.+.+..+
T Consensus       192 ~tvi~vTHd~~~~~~~  207 (353)
T 1oxx_K          192 VTLLVVSHDPADIFAI  207 (353)
T ss_dssp             CEEEEEESCHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHh
Confidence            6788888887766554

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.12  E-value=0.031  Score=53.53  Aligned_cols=22  Identities=23%  Similarity=0.191  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.++.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaG   51 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAG   51 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCcHHHHHHHHHHc
Confidence            4889999999999999999975

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.06  E-value=0.0057  Score=56.65  Aligned_cols=26  Identities=15%  Similarity=0.172  Sum_probs=22.8

Q ss_pred             CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          206 PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       206 ~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .....+|+|+|..|+||||||+.+..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34577999999999999999998876

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.06  E-value=0.0029  Score=53.57  Aligned_cols=22  Identities=9%  Similarity=0.010  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|.|+|++|+||||+|+.+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999987

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.04  E-value=0.0039  Score=59.48  Aligned_cols=45  Identities=13%  Similarity=0.131  Sum_probs=35.2

Q ss_pred             ccceecccHHHHHHHHh-------------cCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLI-------------EGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++|.+..++.+...+.             ........+.++|++|+|||++|+.+++
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~   73 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR   73 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            46898888888888773             1112345678999999999999999988

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.02  E-value=0.02  Score=54.35  Aligned_cols=95  Identities=9%  Similarity=0.099  Sum_probs=55.0

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCccccccc----CeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------ccccCc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYF----DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV-------SVIIGE  276 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------~~~~~~  276 (394)
                      .-.++.|+|++|+|||||+..++.........    ..++|++....+....+ ..+++..+.....       ......
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~  208 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS  208 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence            35699999999999999999988632111111    23488877665544433 3344444322100       000111


Q ss_pred             -CHHHHHHHHHHHcc------CCeEEEEEeCCCC
Q 016120          277 -DYQLKKSILRDYLT------NKKYFIVLDDVFD  303 (394)
Q Consensus       277 -~~~~~~~~l~~~l~------~kr~LlVlDdv~~  303 (394)
                       ...++...+...+.      .+.-+||+|.+-.
T Consensus       209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta  242 (349)
T 1pzn_A          209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS  242 (349)
T ss_dssp             HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence             23344455555553      4678999999977

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.95  E-value=0.0035  Score=52.51  Aligned_cols=22  Identities=9%  Similarity=0.067  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|.|.|++|+||||+|+.+..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999976

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.94  E-value=0.023  Score=55.03  Aligned_cols=94  Identities=6%  Similarity=-0.038  Sum_probs=53.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccc----cccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------ccccCc-
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVK----FYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV-------SVIIGE-  276 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-------~~~~~~-  276 (394)
                      -.++.|+|.+|+|||||+..++-.....    ..-..++|++....+....+ ..+++.++.....       ...... 
T Consensus       178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~  256 (400)
T 3lda_A          178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD  256 (400)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence            4589999999999999999765311111    12245788887776665554 3366666543110       000111 


Q ss_pred             CHHHHHHHHHHHc-cCCeEEEEEeCCCC
Q 016120          277 DYQLKKSILRDYL-TNKKYFIVLDDVFD  303 (394)
Q Consensus       277 ~~~~~~~~l~~~l-~~kr~LlVlDdv~~  303 (394)
                      ........+...+ ..+.-+||+|.+..
T Consensus       257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~  284 (400)
T 3lda_A          257 HQLRLLDAAAQMMSESRFSLIVVDSVMA  284 (400)
T ss_dssp             HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred             HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence            1122333333443 34678999999765

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.92  E-value=0.0047  Score=52.84  Aligned_cols=23  Identities=13%  Similarity=0.150  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|++|+|||||++.+..
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~   31 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALAN   31 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999999987

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.91  E-value=0.014  Score=55.53  Aligned_cols=113  Identities=14%  Similarity=0.057  Sum_probs=64.3

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-c-cccCcCHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV-S-VIIGEDYQLKKSILR  286 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-~-~~~~~~~~~~~~~l~  286 (394)
                      -.+++|+|+.|+|||||.+.+..  .+.......++ .+..+....         ....... . .............+.
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~-t~ed~~e~~---------~~~~~~~v~q~~~~~~~~~~~~~La  190 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHIL-TIEDPIEFV---------HESKKCLVNQREVHRDTLGFSEALR  190 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEE-EEESSCCSC---------CCCSSSEEEEEEBTTTBSCHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEE-EccCcHHhh---------hhccccceeeeeeccccCCHHHHHH
Confidence            35899999999999999998876  22211112221 121211100         0000000 0 000111123344778


Q ss_pred             HHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          287 DYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       287 ~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      ..|...+=+|++|.+.+ .+.++.+....   ..|..||+||...+.+..+
T Consensus       191 ~aL~~~PdvillDEp~d-~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~  237 (356)
T 3jvv_A          191 SALREDPDIILVGEMRD-LETIRLALTAA---ETGHLVFGTLHTTSAAKTI  237 (356)
T ss_dssp             HHTTSCCSEEEESCCCS-HHHHHHHHHHH---HTTCEEEEEESCSSHHHHH
T ss_pred             HHhhhCcCEEecCCCCC-HHHHHHHHHHH---hcCCEEEEEEccChHHHHH
Confidence            88888888999999998 77666655442   3366789999887766443

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.89  E-value=0.027  Score=55.51  Aligned_cols=35  Identities=17%  Similarity=0.101  Sum_probs=25.2

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+..+...+...+   +.+.|.|.+|+|||+++..+..
T Consensus        33 av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~   67 (459)
T 3upu_A           33 AFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIE   67 (459)
T ss_dssp             HHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHH
Confidence            3344444444433   3888999999999999988876

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.89  E-value=0.012  Score=58.79  Aligned_cols=42  Identities=14%  Similarity=0.142  Sum_probs=36.0

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .++|.+..++.+...+..+    .-+.++|++|+|||+||+.+.+.
T Consensus        23 ~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~   64 (500)
T 3nbx_X           23 GLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFA   64 (500)
T ss_dssp             TCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGG
T ss_pred             hhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHH
Confidence            6789999998888888764    35679999999999999999983

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.87  E-value=0.028  Score=57.46  Aligned_cols=128  Identities=13%  Similarity=0.114  Sum_probs=69.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCccc-ccc--cC-eeEEEEeCC----CCCHHHH--------------HHHHHHHhCCC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHV-KFY--FD-CLAWVRVSI----AYDFGKM--------------LDDIIKSVMPP  267 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~-~~~wv~vs~----~~~~~~i--------------~~~i~~~l~~~  267 (394)
                      .+++|+|+.|+|||||.+.++.-..- ...  +. .+.++.-..    ..++...              ..++++.++..
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~  462 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII  462 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc
Confidence            48999999999999999999863211 111  11 223432111    1122221              23445555554


Q ss_pred             CCCccccCc-CHHHHH-HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          268 SRVSVIIGE-DYQLKK-SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       268 ~~~~~~~~~-~~~~~~-~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      ......... +..+.+ -.+...|...+-+|+||.--.  |...-..+...+..-  ..|..||++|.+...+...
T Consensus       463 ~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~  538 (607)
T 3bk7_A          463 DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV  538 (607)
T ss_dssp             TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            322223334 333333 344555667778899999766  343333333333221  2355688888888776655

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.86  E-value=0.01  Score=62.49  Aligned_cols=93  Identities=17%  Similarity=0.215  Sum_probs=56.1

Q ss_pred             ccceecccHHHHHHHHhcC-----------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIEG-----------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|.++.+++|.+.+.-.           -...+-+.++|++|+|||.+|+.+++  +....|     +.++    .. 
T Consensus       478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~f-----~~v~----~~-  545 (806)
T 3cf2_A          478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISIK----GP-  545 (806)
T ss_dssp             TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCEE-----EECC----HH-
T ss_pred             HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCce-----EEec----cc-
Confidence            6778887777776665421           12334567999999999999999998  443332     2221    11 


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD  303 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~  303 (394)
                         +++....         ..+...+.......-+..+++|++|++..
T Consensus       546 ---~l~s~~v---------Gese~~vr~lF~~Ar~~~P~IifiDEiDs  581 (806)
T 3cf2_A          546 ---ELLTMWF---------GESEANVREIFDKARQAAPCVLFFDELDS  581 (806)
T ss_dssp             ---HHHTTTC---------SSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred             ---hhhcccc---------chHHHHHHHHHHHHHHcCCceeechhhhH
Confidence               2222111         11344444444444456789999999874

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.82  E-value=0.0046  Score=52.16  Aligned_cols=22  Identities=9%  Similarity=0.291  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5789999999999999999986

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.81  E-value=0.0046  Score=53.63  Aligned_cols=23  Identities=13%  Similarity=0.092  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|.|+|++|+||||+++.+..
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            45889999999999999999986

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.80  E-value=0.0046  Score=52.72  Aligned_cols=22  Identities=9%  Similarity=0.243  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|++|+|||||++.+..
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5889999999999999999976

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.75  E-value=0.081  Score=48.94  Aligned_cols=24  Identities=21%  Similarity=0.176  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+++++|.+|+||||++..+..
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~  127 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAA  127 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            356999999999999999998876

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.71  E-value=0.0063  Score=52.74  Aligned_cols=24  Identities=17%  Similarity=0.131  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .-.+|+|+|++|+|||||++.+..
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999987

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.71  E-value=0.0043  Score=52.16  Aligned_cols=22  Identities=9%  Similarity=0.126  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|+|+|+.|+|||||++.+..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999987

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.70  E-value=0.015  Score=58.59  Aligned_cols=128  Identities=15%  Similarity=0.134  Sum_probs=66.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCccc-ccc--cC-eeEEEEeCC----CCCHHHHHHH--------------HHHHhCCC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHV-KFY--FD-CLAWVRVSI----AYDFGKMLDD--------------IIKSVMPP  267 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~--F~-~~~wv~vs~----~~~~~~i~~~--------------i~~~l~~~  267 (394)
                      .+++|+|+.|+|||||++.++.-..- ...  +. .+.++.-..    ..++...+..              ++..++..
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~  392 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII  392 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh
Confidence            58999999999999999999863211 111  12 123432111    1223332221              11122221


Q ss_pred             CCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC--CCCcEEEEecCChHHHhhc
Q 016120          268 SRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD--ENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       268 ~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~--~~gs~IivTTR~~~v~~~~  337 (394)
                      ......... +-.+. .-.+...|..++-+|+||.--+  |...-..+...+..-  ..|..||++|.+.+.+..+
T Consensus       393 ~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~  468 (538)
T 1yqt_A          393 DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV  468 (538)
T ss_dssp             GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            111122233 33333 3345556677788999999776  444333444333321  2355688888887766655

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.68  E-value=0.039  Score=55.54  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        25 Gei~gLiGpNGaGKSTLlkiL~G   47 (538)
T 3ozx_A           25 NTILGVLGKNGVGKTTVLKILAG   47 (538)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            46899999999999999999975

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.65  E-value=0.0054  Score=52.22  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+.|.|+|++|+||||+|+.+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999999976

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.63  E-value=0.057  Score=55.14  Aligned_cols=128  Identities=10%  Similarity=0.005  Sum_probs=68.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCccc--cccc-C-eeEEEEeC------------------CCCCHHHHHHHHHHHhCCC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHV--KFYF-D-CLAWVRVS------------------IAYDFGKMLDDIIKSVMPP  267 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~--~~~F-~-~~~wv~vs------------------~~~~~~~i~~~i~~~l~~~  267 (394)
                      .+++|+|+.|+|||||++.+..-..-  .... . ...++.-.                  ..+.......++++.++..
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~  458 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID  458 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence            47999999999999999999752111  1000 0 11222110                  0111122334455555544


Q ss_pred             CCCccccCc-CHHHHH-HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhc
Q 016120          268 SRVSVIIGE-DYQLKK-SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       268 ~~~~~~~~~-~~~~~~-~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~  337 (394)
                      ....+.... +-.+.+ -.+...|..++=+|+||.--.  |...-..+...+..  ...|..||++|.+.+.+..+
T Consensus       459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~  534 (608)
T 3j16_B          459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL  534 (608)
T ss_dssp             TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            332223344 333333 345566777888999999766  33322333322221  12356688888888777665

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.58  E-value=0.0051  Score=53.05  Aligned_cols=22  Identities=18%  Similarity=0.288  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +.|.|+|++|+|||||++.+..
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3477999999999999999876

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.58  E-value=0.0072  Score=51.64  Aligned_cols=23  Identities=13%  Similarity=0.153  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|.|.|++|+||||+|+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999999976

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.57  E-value=0.0065  Score=51.82  Aligned_cols=22  Identities=14%  Similarity=0.170  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..|.|.|++|+||||+|+.+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999987

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.56  E-value=0.0065  Score=52.55  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||++.+..
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHh
Confidence            5899999999999999999976

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.54  E-value=0.0095  Score=50.20  Aligned_cols=23  Identities=13%  Similarity=0.270  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|+||||+++.+..
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999876

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.50  E-value=0.024  Score=57.13  Aligned_cols=128  Identities=14%  Similarity=0.111  Sum_probs=63.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccc-cc--cC--eeEEEEeC--C--CCCHHHHHH---------------HHHHHhC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVK-FY--FD--CLAWVRVS--I--AYDFGKMLD---------------DIIKSVM  265 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~--F~--~~~wv~vs--~--~~~~~~i~~---------------~i~~~l~  265 (394)
                      .+++|+|+.|+|||||++.++.-..-. ..  +.  ...++.-.  .  ...+.+.+.               ++++.++
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~  374 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLN  374 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcC
Confidence            489999999999999999998631110 00  11  11222111  0  112222211               1111111


Q ss_pred             CCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhc
Q 016120          266 PPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       266 ~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~  337 (394)
                      ........... +-.+. .-.+...|..++=+|+||.--.  |...-..+...+..  ...|..||++|.+.+.+..+
T Consensus       375 l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~  452 (538)
T 3ozx_A          375 LHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYI  452 (538)
T ss_dssp             GGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            11111112233 32322 3344555667777899999776  33332333333321  12356688888888777665

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.49  E-value=0.034  Score=54.64  Aligned_cols=62  Identities=16%  Similarity=0.150  Sum_probs=37.6

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCC-HHHHHHHHH
Q 016120          198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYD-FGKMLDDII  261 (394)
Q Consensus       198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~  261 (394)
                      .++.|..-..+ ..++|+|.+|+|||||++.+..+... .+-+..+++-+++..+ ..+++.++.
T Consensus       141 ~ID~L~pi~kG-q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~  203 (473)
T 1sky_E          141 VVDLLAPYIKG-GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMK  203 (473)
T ss_dssp             HHHHHSCEETT-CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred             HHHHHhhhccC-CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhh
Confidence            45555432222 35789999999999999999874222 1224556777776653 334444443

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.46  E-value=0.0078  Score=54.28  Aligned_cols=24  Identities=8%  Similarity=0.086  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+|+|.|+.|+||||+|+.+..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999876

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.45  E-value=0.0055  Score=53.11  Aligned_cols=23  Identities=13%  Similarity=0.176  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|.|+|+.|+||||+|+.+..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999976

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.44  E-value=0.007  Score=51.55  Aligned_cols=22  Identities=18%  Similarity=0.219  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|.|.|++|+||||+++.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999987

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.43  E-value=0.012  Score=54.21  Aligned_cols=37  Identities=16%  Similarity=0.258  Sum_probs=26.8

Q ss_pred             HHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          195 REELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       195 ~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++++..++..   .....++.|.|++|+||||+|+.+..
T Consensus        16 ~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           16 LNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             HHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44444444433   23456889999999999999999976

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.43  E-value=0.0087  Score=52.11  Aligned_cols=24  Identities=17%  Similarity=0.120  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+++|+|+.|+|||||++.+..
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999876

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.40  E-value=0.0086  Score=51.19  Aligned_cols=22  Identities=14%  Similarity=0.125  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||++.+..
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            4789999999999999999975

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.40  E-value=0.043  Score=47.92  Aligned_cols=84  Identities=10%  Similarity=0.107  Sum_probs=46.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC--------CCCHHHHHHHHHHHhCCCCCCccccCcCHHHHH
Q 016120          211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI--------AYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKK  282 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--------~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~  282 (394)
                      +|.|.|++|+||+|.|+.+..+      |.. ..++.+.        ........+.++..-...         ..+-..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~------~g~-~~istGdllR~~i~~~t~lg~~~~~~~~~G~lv---------pd~iv~   65 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE------KGF-VHISTGDILREAVQKGTPLGKKAKEYMERGELV---------PDDLII   65 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH------HCC-EEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCC---------CHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH------HCC-eEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcC---------CHHHHH
Confidence            5778999999999999999873      321 2222111        111112222222221111         445566


Q ss_pred             HHHHHHccCCeEEEEEeCCCCCchhHHHH
Q 016120          283 SILRDYLTNKKYFIVLDDVFDNSEIWSDL  311 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~l  311 (394)
                      ..+.+.+..... +|||+.-.+..+-+.+
T Consensus        66 ~lv~~~l~~~~~-~ilDGfPRt~~Qa~~l   93 (206)
T 3sr0_A           66 ALIEEVFPKHGN-VIFDGFPRTVKQAEAL   93 (206)
T ss_dssp             HHHHHHCCSSSC-EEEESCCCSHHHHHHH
T ss_pred             HHHHHhhccCCc-eEecCCchhHHHHHHH
Confidence            777888865443 6889987633333333

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.40  E-value=0.008  Score=56.62  Aligned_cols=43  Identities=14%  Similarity=0.078  Sum_probs=31.8

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|.+..+..+...+....  ..-+.|+|.+|+|||+||+.+.+
T Consensus        25 ~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~   67 (350)
T 1g8p_A           25 AIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAA   67 (350)
T ss_dssp             GSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHH
T ss_pred             hccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHH
Confidence            89999886665544443321  22377999999999999999987

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.39  E-value=0.0015  Score=56.34  Aligned_cols=22  Identities=14%  Similarity=-0.088  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++.|+|+.|+||||++..+..
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~   25 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVE   25 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4778999999999999865554

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.39  E-value=0.0085  Score=51.92  Aligned_cols=23  Identities=22%  Similarity=0.252  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+++|+|+.|+|||||++.+..
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999986

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.39  E-value=0.061  Score=57.70  Aligned_cols=123  Identities=16%  Similarity=0.144  Sum_probs=67.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccC----eeEEEEeCCCC-------CH-----------HHHHHHHHHHhCCC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFD----CLAWVRVSIAY-------DF-----------GKMLDDIIKSVMPP  267 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~vs~~~-------~~-----------~~i~~~i~~~l~~~  267 (394)
                      .+++|+|+.|+|||||.+.+... .+. .++    .. .+.+.+..       ++           ..-..++++.++..
T Consensus       462 e~v~LiGpNGsGKSTLLk~LagG-~i~-g~~~~~~~~-~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~  538 (986)
T 2iw3_A          462 RRYGICGPNGCGKSTLMRAIANG-QVD-GFPTQEECR-TVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT  538 (986)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHT-CST-TCCCTTTSC-EEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CcC-CCcccccee-EEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence            48899999999999999999842 111 111    11 12222211       11           22344566666653


Q ss_pred             C-CCccccCc-CHH-HHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          268 S-RVSVIIGE-DYQ-LKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       268 ~-~~~~~~~~-~~~-~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      . ........ +.. ...-.+...|-.++=+|+||.--+  +...-..+...+..  .|..||++|.+......+
T Consensus       539 ~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~  611 (986)
T 2iw3_A          539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNV  611 (986)
T ss_dssp             HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHH
T ss_pred             hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHh
Confidence            1 10112223 222 222334444556677899999876  44444444444443  366788888887766554

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.38  E-value=0.0089  Score=52.22  Aligned_cols=23  Identities=13%  Similarity=0.251  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|+|||||++.+..
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~   30 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFK   30 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHh
Confidence            46899999999999999999987

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.37  E-value=0.012  Score=55.74  Aligned_cols=43  Identities=14%  Similarity=0.207  Sum_probs=31.0

Q ss_pred             ceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          189 NEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       189 ~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ++.+...+++++.+...  ......+.|+|++|+||||+++.++.
T Consensus         2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A            2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence            34455566676666432  23456788999999999999998876

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.37  E-value=0.0094  Score=51.34  Aligned_cols=25  Identities=16%  Similarity=0.131  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhc
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+..+|+|+|+.|+||||+|+.+..
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHH
Confidence            3567999999999999999999987

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.36  E-value=0.01  Score=51.56  Aligned_cols=24  Identities=13%  Similarity=0.142  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+++|+|++|+||||+|+.+..
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999987

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.35  E-value=0.0079  Score=51.80  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .|+|.|+.|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            588999999999999999987

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.34  E-value=0.0095  Score=51.48  Aligned_cols=22  Identities=14%  Similarity=0.315  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+||||+++.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~   28 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFE   28 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999976

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.32  E-value=0.11  Score=53.09  Aligned_cols=80  Identities=11%  Similarity=-0.008  Sum_probs=42.5

Q ss_pred             HHHHHHHHhCCCCCCccccCc-CHHHHH-HHHHHHccCCeEEEEEeCCCC--CchhHH---HHHhhCCCCCCCcEEEEec
Q 016120          256 MLDDIIKSVMPPSRVSVIIGE-DYQLKK-SILRDYLTNKKYFIVLDDVFD--NSEIWS---DLEELLPDDENGSRVLITV  328 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~-~~~~~~-~~l~~~l~~kr~LlVlDdv~~--~~~~~~---~l~~~l~~~~~gs~IivTT  328 (394)
                      -..++++.++........... +..+.+ -.+...|..++=+|+||.--.  +...-.   .+...+.  ..|..||++|
T Consensus       201 ~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~vt  278 (608)
T 3j16_B          201 DVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL--APTKYVICVE  278 (608)
T ss_dssp             HHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGG--TTTCEEEEEC
T ss_pred             HHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHH--hCCCEEEEEe
Confidence            345667777665332223333 322222 233444555666899998776  333222   2233332  2355688888


Q ss_pred             CChHHHhhc
Q 016120          329 TDPDLLASL  337 (394)
Q Consensus       329 R~~~v~~~~  337 (394)
                      .+.+.+..+
T Consensus       279 Hdl~~~~~~  287 (608)
T 3j16_B          279 HDLSVLDYL  287 (608)
T ss_dssp             SCHHHHHHH
T ss_pred             CCHHHHHHh
Confidence            887766655

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=95.32  E-value=0.0072  Score=51.24  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...|.|+|++|+||||+++.+..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45788999999999999999986

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=95.30  E-value=0.0073  Score=57.87  Aligned_cols=53  Identities=9%  Similarity=-0.125  Sum_probs=32.1

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc-ccccCeeEEEEeCCCC
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV-KFYFDCLAWVRVSIAY  251 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~  251 (394)
                      ++++.+..-. .-..++|+|.+|+|||||++.+.+.-.. ...+.+ +++-+++..
T Consensus       163 raID~~~pi~-rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~  216 (422)
T 3ice_A          163 RVLDLASPIG-RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP  216 (422)
T ss_dssp             HHHHHHSCCB-TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred             eeeeeeeeec-CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence            3445554432 2347789999999999999988762111 112333 356666554

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.29  E-value=0.0083  Score=52.79  Aligned_cols=22  Identities=23%  Similarity=0.237  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|+|+|+.|+||||+|+.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999875

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.28  E-value=0.0074  Score=52.49  Aligned_cols=23  Identities=13%  Similarity=0.274  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..++.|+|++|+|||||++.+..
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999999976

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.27  E-value=0.0095  Score=51.00  Aligned_cols=23  Identities=9%  Similarity=0.154  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|.|.|+.|+||||+|+.+..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999976

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.27  E-value=0.039  Score=51.34  Aligned_cols=24  Identities=17%  Similarity=0.137  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+++|+|.+|+||||++..++.
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHH
Confidence            357999999999999999998886

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=95.25  E-value=0.0088  Score=51.78  Aligned_cols=22  Identities=9%  Similarity=0.107  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|+|+|+.|+||||+++.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3689999999999999999876

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.25  E-value=0.012  Score=52.89  Aligned_cols=36  Identities=14%  Similarity=-0.035  Sum_probs=25.9

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++...+.........|.|.|++|+||||+|+.+..
T Consensus        16 ~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           16 NELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             HHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            334333333223467899999999999999999976

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.25  E-value=0.014  Score=54.76  Aligned_cols=43  Identities=9%  Similarity=0.008  Sum_probs=29.6

Q ss_pred             ceecccHHHHHHHHhcC--CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          189 NEFERGREELFDLLIEG--PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       189 ~Gr~~~~~~i~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +|-...+..+...+...  .....+++|.|..|+|||||++.+..
T Consensus        70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            33334444444444443  24567999999999999999998865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.24  E-value=0.0099  Score=50.72  Aligned_cols=23  Identities=26%  Similarity=0.200  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|.|.|+.|+||||+|+.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999876

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=95.24  E-value=0.011  Score=51.40  Aligned_cols=22  Identities=18%  Similarity=0.154  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|+|+|+.|+||||+++.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999975

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.24  E-value=0.04  Score=53.61  Aligned_cols=24  Identities=21%  Similarity=0.268  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+|.|+|++|+||||+|+.+..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999987

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.23  E-value=0.01  Score=50.70  Aligned_cols=23  Identities=17%  Similarity=0.068  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...|.|+|+.|+||||+++.+..
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999977

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.22  E-value=0.011  Score=51.09  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+|.|.|+.|+||||+|+.+..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999986

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.22  E-value=0.068  Score=50.21  Aligned_cols=24  Identities=25%  Similarity=0.158  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+++|+|+.|+||||+++.+..
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999998876

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.21  E-value=0.0094  Score=49.89  Aligned_cols=24  Identities=8%  Similarity=0.099  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+|.|.|+.|+||||+|+.+..
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999976

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.20  E-value=0.089  Score=51.32  Aligned_cols=24  Identities=13%  Similarity=0.065  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...++.++|.+|+||||++..+..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~  119 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAY  119 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999988875

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.20  E-value=0.0098  Score=53.80  Aligned_cols=22  Identities=14%  Similarity=0.028  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++.|+|+.|+||||||+.+..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999999976

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.18  E-value=0.0081  Score=52.11  Aligned_cols=22  Identities=18%  Similarity=0.288  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..++|+|+.|+|||||++.+..
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999999875

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=95.15  E-value=0.1  Score=50.96  Aligned_cols=24  Identities=25%  Similarity=0.105  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..++|.++|.+|+||||++..+..
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~  122 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGK  122 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999988875

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.13  E-value=0.1  Score=51.04  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +..+|.++|.+|+||||++..+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~  122 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLAR  122 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHH
Confidence            468999999999999999888765

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.10  E-value=0.012  Score=53.47  Aligned_cols=23  Identities=13%  Similarity=0.367  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|.|+|++|+||||+|+.+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            46889999999999999999986

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.10  E-value=0.015  Score=52.38  Aligned_cols=37  Identities=16%  Similarity=0.093  Sum_probs=26.9

Q ss_pred             HHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          195 REELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       195 ~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+.+...+..+   .....++.++|++|+||||+|+.+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           15 LARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             HHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             HHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34444444433   23456899999999999999999976

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.10  E-value=0.011  Score=50.12  Aligned_cols=22  Identities=18%  Similarity=0.167  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..|.+.|+.|+||||+|+.+..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999976

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.08  E-value=0.012  Score=52.86  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+++|+|+.|+|||||++.+..
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~   49 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQ   49 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999984

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.08  E-value=0.01  Score=50.12  Aligned_cols=21  Identities=10%  Similarity=0.134  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .|.|+|++|+||||+|+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999999986

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.08  E-value=0.008  Score=51.11  Aligned_cols=21  Identities=10%  Similarity=0.104  Sum_probs=19.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +|.|+|++|+||||+|+.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999976

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.07  E-value=0.011  Score=51.40  Aligned_cols=22  Identities=18%  Similarity=0.141  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||++.+..
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999999875

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.05  E-value=0.013  Score=49.88  Aligned_cols=24  Identities=21%  Similarity=0.099  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+|.|+|++|+||||+++.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            356889999999999999999987

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.04  E-value=0.011  Score=50.74  Aligned_cols=23  Identities=13%  Similarity=0.170  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|+|.|++|+||||+|+.+..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999977

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.03  E-value=0.013  Score=50.77  Aligned_cols=22  Identities=14%  Similarity=0.084  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..|.|.|+.|+||||+|+.+..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5789999999999999999987

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.01  E-value=0.013  Score=49.97  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|.|.|+.|+||||+|+.+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999976

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.00  E-value=0.039  Score=63.20  Aligned_cols=88  Identities=15%  Similarity=-0.015  Sum_probs=56.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILR  286 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~  286 (394)
                      .-+.+.|+|++|+|||+||.++..  +...+=..++|+++...++...     ++.++..-..-.-... +.++....+.
T Consensus      1426 ~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A         1426 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence            456888999999999999998877  3333334567888888777665     4455422111000011 4455556666


Q ss_pred             HHcc-CCeEEEEEeCCC
Q 016120          287 DYLT-NKKYFIVLDDVF  302 (394)
Q Consensus       287 ~~l~-~kr~LlVlDdv~  302 (394)
                      ...+ .+.-+||+|.+.
T Consensus      1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A         1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp             HHHHHTCCSEEEESCGG
T ss_pred             HHHhcCCCCEEEEcChh
Confidence            5553 577899999995

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=95.00  E-value=0.29  Score=45.81  Aligned_cols=137  Identities=11%  Similarity=-0.042  Sum_probs=83.2

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcC
Q 016120          198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGED  277 (394)
Q Consensus       198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~  277 (394)
                      +.+.|. + .-.++..++|..|.||++.+..+.+... ...|+...-+.+....                         +
T Consensus         9 l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~-------------------------~   60 (343)
T 1jr3_D            9 LRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNT-------------------------D   60 (343)
T ss_dssp             HHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTC-------------------------C
T ss_pred             HHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCC-------------------------C
Confidence            444444 2 3466888999999999999988876211 1234322222222222                         3


Q ss_pred             HHHHHHHHHHH-ccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCC-------hHHHhhchhcCCCceee
Q 016120          278 YQLKKSILRDY-LTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTD-------PDLLASLEMENGEKIRR  347 (394)
Q Consensus       278 ~~~~~~~l~~~-l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~-------~~v~~~~~~~~~~~~~~  347 (394)
                      ..++.+.+... +-+++-++|+|++..  +...++.+...+....+++.+|++|..       ..+...+  .+...+++
T Consensus        61 ~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i--~sr~~~~~  138 (343)
T 1jr3_D           61 WNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTAL--ANRSVQVT  138 (343)
T ss_dssp             HHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHH--TTTCEEEE
T ss_pred             HHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHH--HhCceEEE
Confidence            33333333322 345667888999854  367788888887766667777776543       2455554  24556788


Q ss_pred             CCccCCCCCCCChHHHHHHHHHHh
Q 016120          348 DSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       348 ~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                           ..++  +.++....+.+.+
T Consensus       139 -----~~~l--~~~~l~~~l~~~~  155 (343)
T 1jr3_D          139 -----CQTP--EQAQLPRWVAARA  155 (343)
T ss_dssp             -----ECCC--CTTHHHHHHHHHH
T ss_pred             -----eeCC--CHHHHHHHHHHHH
Confidence                 8999  8887776666654

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=94.99  E-value=0.013  Score=54.73  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +.++|+|.|-|||||||.+..+..
T Consensus        47 ~aKVIAIaGKGGVGKTTtavNLA~   70 (314)
T 3fwy_A           47 GAKVFAVYGKGGIGKSTTSSNLSA   70 (314)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCccCHHHHHHHHHH
Confidence            578999999999999998877754

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.99  E-value=0.32  Score=47.52  Aligned_cols=53  Identities=13%  Similarity=0.029  Sum_probs=34.8

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      .-.++.|.|.+|+||||||..++.+..... =..++|++..  .+...+...++..
T Consensus       199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~  251 (444)
T 2q6t_A          199 PGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS  251 (444)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence            345888999999999999988876422211 1246676553  4556666666543

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=94.97  E-value=0.056  Score=53.33  Aligned_cols=104  Identities=15%  Similarity=0.175  Sum_probs=62.3

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCC-HHHHHHHHHHHhCCC-------CC
Q 016120          198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYD-FGKMLDDIIKSVMPP-------SR  269 (394)
Q Consensus       198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~-------~~  269 (394)
                      .++.|..-.. =..++|.|.+|+|||+|++.+.++. .+.+-+.++++-+++... ..+++.++...-...       ..
T Consensus       155 vID~l~pigk-Gqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt  232 (498)
T 1fx0_B          155 VVNLLAPYRR-GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV  232 (498)
T ss_dssp             THHHHSCCCT-TCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred             Eeeeeccccc-CCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence            4566654332 2356899999999999999888731 233457888888888764 556666666542221       00


Q ss_pred             Cc--cccCc------CHHHHHHHHHHHcc---CCeEEEEEeCCCC
Q 016120          270 VS--VIIGE------DYQLKKSILRDYLT---NKKYFIVLDDVFD  303 (394)
Q Consensus       270 ~~--~~~~~------~~~~~~~~l~~~l~---~kr~LlVlDdv~~  303 (394)
                      .-  ...+.      -.....-.+.++++   ++..||++||+..
T Consensus       233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR  277 (498)
T 1fx0_B          233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR  277 (498)
T ss_dssp             EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence            00  00011      12233444556654   5899999999843

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=94.97  E-value=0.0098  Score=49.86  Aligned_cols=22  Identities=9%  Similarity=0.141  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|.|.|+.|+||||+|+.+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999976

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.96  E-value=0.015  Score=54.44  Aligned_cols=24  Identities=8%  Similarity=-0.011  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+++|+|..|+|||||++.+..
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHh
Confidence            457999999999999999999876

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.90  E-value=0.013  Score=48.81  Aligned_cols=21  Identities=5%  Similarity=-0.099  Sum_probs=19.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .|.|.|+.|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999977

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=94.88  E-value=0.0097  Score=50.39  Aligned_cols=23  Identities=17%  Similarity=0.075  Sum_probs=16.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|.|.|+.|+||||+|+.+..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999976

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=94.88  E-value=0.075  Score=51.74  Aligned_cols=23  Identities=17%  Similarity=0.026  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+++++|.+|+||||++..+..
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~  120 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLAL  120 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999988875

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=94.87  E-value=0.014  Score=49.86  Aligned_cols=21  Identities=24%  Similarity=0.310  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +|+|.|+.|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999999987

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.87  E-value=0.022  Score=49.91  Aligned_cols=25  Identities=20%  Similarity=0.387  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ....|+|+|.+|+|||||+..+...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4788999999999999999988763

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.87  E-value=0.044  Score=47.93  Aligned_cols=55  Identities=11%  Similarity=0.169  Sum_probs=34.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccc---c-ccCeeEEEEeCCCCCHHHHHHHHHHHh
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVK---F-YFDCLAWVRVSIAYDFGKMLDDIIKSV  264 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~i~~~i~~~l  264 (394)
                      -.+++|+|++|+|||||++.++......   . .-...+|+.-...+.... ...+.+..
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~   83 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNR   83 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHc
Confidence            4689999999999999999997521111   1 123577877655444333 33344443

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=94.87  E-value=0.08  Score=52.03  Aligned_cols=104  Identities=17%  Similarity=0.226  Sum_probs=60.6

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCC-HHHHHHHHHHHhCCC------CC
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYD-FGKMLDDIIKSVMPP------SR  269 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~------~~  269 (394)
                      +.++.|..-. +=..++|.|.+|+|||+|++.+.++. .+.+-+.++++-+++... ..+++.++...-...      ..
T Consensus       142 r~ID~l~pig-kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt  219 (482)
T 2ck3_D          142 KVVDLLAPYA-KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV  219 (482)
T ss_dssp             HHHHHHSCEE-TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred             EEEecccccc-cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence            4566665432 22467899999999999999988731 233446677888887654 455666666542221      00


Q ss_pred             Cc--cccCcC------HHHHHHHHHHHc---cCCeEEEEEeCCC
Q 016120          270 VS--VIIGED------YQLKKSILRDYL---TNKKYFIVLDDVF  302 (394)
Q Consensus       270 ~~--~~~~~~------~~~~~~~l~~~l---~~kr~LlVlDdv~  302 (394)
                      .-  ...+..      .....-.+.+++   +++..||++||+.
T Consensus       220 vvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit  263 (482)
T 2ck3_D          220 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF  263 (482)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence            00  001111      112223344444   4789999999974

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=94.84  E-value=0.016  Score=50.10  Aligned_cols=23  Identities=17%  Similarity=0.115  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...|.|+|++|+||||+|+.+..
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45889999999999999999976

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=94.84  E-value=0.024  Score=53.92  Aligned_cols=37  Identities=16%  Similarity=0.120  Sum_probs=28.7

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          195 REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..++.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus        65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence            4455556654445678999999999999999988864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=94.83  E-value=0.012  Score=51.96  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||++.+..
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999999876

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=94.83  E-value=0.014  Score=52.64  Aligned_cols=23  Identities=17%  Similarity=0.186  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+|+|+|+.|+||||+++.+..
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~   49 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAE   49 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999984

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=94.81  E-value=0.017  Score=51.68  Aligned_cols=24  Identities=4%  Similarity=0.079  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+++|.|+.|+|||||++.+..
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998876

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.81  E-value=0.044  Score=52.51  Aligned_cols=110  Identities=17%  Similarity=0.161  Sum_probs=58.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeE-EEEeCCCCCHHHHHHHHHHHhCCCCC-Ccc-ccCcCHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLA-WVRVSIAYDFGKMLDDIIKSVMPPSR-VSV-IIGEDYQLKKSIL  285 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~i~~~i~~~l~~~~~-~~~-~~~~~~~~~~~~l  285 (394)
                      -.+++|+|+.|+||||+++.+..  .+.......+ ++.-.-.+.           +..... ..+ .++.+...+...+
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e~~~e~~-----------~~~~~~~v~Q~~~g~~~~~~~~~l  202 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYV-----------FKHKKSIVNQREVGEDTKSFADAL  202 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEESSCCSC-----------CCCSSSEEEEEEBTTTBSCSHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEecccHhhh-----------hccCceEEEeeecCCCHHHHHHHH
Confidence            46899999999999999998876  2221112223 332111100           000000 000 0000111224456


Q ss_pred             HHHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHh
Q 016120          286 RDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLA  335 (394)
Q Consensus       286 ~~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~  335 (394)
                      ...|...+=+|++|.+.+ .+.........   ..|..|+.|+...++..
T Consensus       203 ~~~L~~~pd~illdE~~d-~e~~~~~l~~~---~~g~~vi~t~H~~~~~~  248 (372)
T 2ewv_A          203 RAALREDPDVIFVGEMRD-LETVETALRAA---ETGHLVFGTLHTNTAID  248 (372)
T ss_dssp             HHHTTSCCSEEEESCCCS-HHHHHHHHHHH---TTTCEEEECCCCCSHHH
T ss_pred             HHHhhhCcCEEEECCCCC-HHHHHHHHHHH---hcCCEEEEEECcchHHH
Confidence            667766777899999987 65444433332   34666888887655433

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=94.81  E-value=0.015  Score=50.55  Aligned_cols=23  Identities=9%  Similarity=0.254  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -++++|+|+.|+|||||++.+..
T Consensus        19 g~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECcCCCCHHHHHHHHHh
Confidence            46889999999999999999986

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=94.80  E-value=0.016  Score=50.40  Aligned_cols=23  Identities=9%  Similarity=0.023  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|.|.|+.|+||||+|+.+..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999987

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=94.79  E-value=0.015  Score=49.24  Aligned_cols=24  Identities=13%  Similarity=0.077  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+++.|+|..|+|||||+..+..
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999987

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=94.74  E-value=0.16  Score=46.95  Aligned_cols=23  Identities=17%  Similarity=0.146  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+++++|.+|+||||++..+..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~  120 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAY  120 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999988875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.73  E-value=0.066  Score=53.91  Aligned_cols=80  Identities=16%  Similarity=0.226  Sum_probs=42.8

Q ss_pred             HHHHHHhCCCCCCccccCc-CHH-HHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChH
Q 016120          258 DDIIKSVMPPSRVSVIIGE-DYQ-LKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPD  332 (394)
Q Consensus       258 ~~i~~~l~~~~~~~~~~~~-~~~-~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~  332 (394)
                      .++++.++........... +.. ...-.+...|..++=+|+||.--+  +...-..+...+.. ...|..||++|.+..
T Consensus       140 ~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~  219 (538)
T 1yqt_A          140 EEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA  219 (538)
T ss_dssp             HHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            4566666654332223333 322 223344555666778999999876  44322222222211 013666888888877


Q ss_pred             HHhhc
Q 016120          333 LLASL  337 (394)
Q Consensus       333 v~~~~  337 (394)
                      .+..+
T Consensus       220 ~~~~~  224 (538)
T 1yqt_A          220 VLDYL  224 (538)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66655

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.70  E-value=0.2  Score=50.87  Aligned_cols=23  Identities=22%  Similarity=0.144  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -..++|+|+.|+|||||++.+..
T Consensus       369 G~~~~ivG~sGsGKSTll~~l~g  391 (582)
T 3b5x_A          369 GKTVALVGRSGSGKSTIANLFTR  391 (582)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35889999999999999999864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.70  E-value=0.016  Score=50.23  Aligned_cols=23  Identities=4%  Similarity=-0.153  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|.|.|+.|+||||+|+.+..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999987

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=94.69  E-value=0.019  Score=48.00  Aligned_cols=23  Identities=22%  Similarity=0.195  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|.|||||.+.+..
T Consensus        33 Ge~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A           33 AIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999876

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=94.68  E-value=0.0092  Score=51.94  Aligned_cols=21  Identities=19%  Similarity=0.243  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +|+|.|+.|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999999876

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.65  E-value=0.017  Score=50.72  Aligned_cols=23  Identities=9%  Similarity=0.121  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...|.|.|+.|+||||+|+.+..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999977

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.65  E-value=0.021  Score=49.85  Aligned_cols=38  Identities=32%  Similarity=0.330  Sum_probs=27.5

Q ss_pred             ccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          193 RGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       193 ~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +..+.+...+..  ....+++|+|.+|+|||||+..+...
T Consensus        16 ~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           16 RLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             HHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence            344444444432  24789999999999999999988763

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.63  E-value=0.016  Score=51.17  Aligned_cols=23  Identities=17%  Similarity=0.231  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...|.|.|+.|+||||+|+.+..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999986

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=94.63  E-value=0.02  Score=50.61  Aligned_cols=25  Identities=16%  Similarity=0.166  Sum_probs=22.5

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhc
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...++|.|.|++|+||||.|+.+..
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999999987

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=94.61  E-value=0.018  Score=49.72  Aligned_cols=24  Identities=17%  Similarity=0.122  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .-.+|+|+|+.|+||||+|+.+..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            567999999999999999999976

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=94.61  E-value=0.017  Score=50.99  Aligned_cols=23  Identities=13%  Similarity=0.117  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g   38 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLK   38 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999999999976

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.59  E-value=0.02  Score=52.62  Aligned_cols=24  Identities=29%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+|+|.|+.|+||||+|+.+..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999873

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=94.57  E-value=0.12  Score=48.62  Aligned_cols=91  Identities=9%  Similarity=-0.075  Sum_probs=54.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC------------------
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV------------------  270 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------------------  270 (394)
                      -.++.|.|.+|+||||||..++.+...  +=..++|++.  ..+...+...++.....-...                  
T Consensus        46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a  121 (338)
T 4a1f_A           46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKC  121 (338)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHH
Confidence            358889999999999999988764222  1234556654  455666666665432211000                  


Q ss_pred             ----------ccccCc-CHHHHHHHHHHHccC--CeEEEEEeCCCC
Q 016120          271 ----------SVIIGE-DYQLKKSILRDYLTN--KKYFIVLDDVFD  303 (394)
Q Consensus       271 ----------~~~~~~-~~~~~~~~l~~~l~~--kr~LlVlDdv~~  303 (394)
                                ..+... +..++...++...+.  +.-+||+|-+..
T Consensus       122 ~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLql  167 (338)
T 4a1f_A          122 FDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQL  167 (338)
T ss_dssp             HHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEEC
T ss_pred             HHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHH
Confidence                      011122 566666666665432  467888887654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.52  E-value=0.013  Score=49.62  Aligned_cols=22  Identities=18%  Similarity=0.267  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|..|+|||||++.+..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999876

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=94.51  E-value=0.02  Score=53.35  Aligned_cols=24  Identities=25%  Similarity=0.169  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+++|+|++|+||||+++.+..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            356999999999999999998874

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=94.50  E-value=0.017  Score=50.87  Aligned_cols=23  Identities=13%  Similarity=-0.119  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...|.|.|++|+||||+|+.+..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999999987

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.50  E-value=0.021  Score=49.24  Aligned_cols=22  Identities=14%  Similarity=0.071  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..|+|.|+.|+||||+++.+..
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            5789999999999999999987

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=94.49  E-value=0.019  Score=50.15  Aligned_cols=21  Identities=10%  Similarity=0.161  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999976

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=94.48  E-value=0.04  Score=51.63  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+++|+|.+|+||||++..+..
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999988875

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=94.46  E-value=0.021  Score=48.30  Aligned_cols=23  Identities=22%  Similarity=0.078  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+|+|+|+.|+||||+++.+..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999976

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=94.45  E-value=0.024  Score=49.62  Aligned_cols=23  Identities=17%  Similarity=0.164  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|+|.|+.|+||||+++.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999865

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=94.41  E-value=0.023  Score=49.52  Aligned_cols=23  Identities=9%  Similarity=0.013  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|.|+|+.|+||||+++.+..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999999976

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=94.36  E-value=0.021  Score=49.89  Aligned_cols=21  Identities=10%  Similarity=0.088  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .|.|.|++|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999976

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.31  E-value=0.17  Score=51.60  Aligned_cols=80  Identities=14%  Similarity=0.174  Sum_probs=42.7

Q ss_pred             HHHHHHhCCCCCCccccCc-CHHHH-HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChH
Q 016120          258 DDIIKSVMPPSRVSVIIGE-DYQLK-KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPD  332 (394)
Q Consensus       258 ~~i~~~l~~~~~~~~~~~~-~~~~~-~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~  332 (394)
                      .++++.++........... +..+. .-.+...|..++=+|+||.--.  +...-..+...+..- ..|..||++|.+..
T Consensus       210 ~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~  289 (607)
T 3bk7_A          210 EEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA  289 (607)
T ss_dssp             HHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence            4566666654322222333 33222 2344455566777999999876  333222222222110 13667999999887


Q ss_pred             HHhhc
Q 016120          333 LLASL  337 (394)
Q Consensus       333 v~~~~  337 (394)
                      .+..+
T Consensus       290 ~~~~~  294 (607)
T 3bk7_A          290 VLDYL  294 (607)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            76655

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.30  E-value=0.015  Score=51.56  Aligned_cols=21  Identities=19%  Similarity=0.321  Sum_probs=15.8

Q ss_pred             eEEEEEcCCCccHHHHHHHHh
Q 016120          210 AVVAILDSSGFDKTVFTADTY  230 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~  230 (394)
                      .+++|+|+.|+|||||++.+.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             CEEEEECSCC----CHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999998

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=94.25  E-value=0.032  Score=54.66  Aligned_cols=45  Identities=11%  Similarity=0.060  Sum_probs=34.3

Q ss_pred             ccceecccHHHHHHHHhcC------------CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEG------------PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++|.++.+..+...+...            +...+-+.++|++|+||||+|+.+..
T Consensus        16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~   72 (444)
T 1g41_A           16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK   72 (444)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence            6788888888887666321            11235578999999999999999987

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.22  E-value=0.021  Score=49.28  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|+|+.|+|||||++.++.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            578999999999999998876

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=94.21  E-value=0.16  Score=44.98  Aligned_cols=105  Identities=12%  Similarity=0.051  Sum_probs=55.0

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC-ccccccc-CeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCc
Q 016120          194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN-DHVKFYF-DCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVS  271 (394)
Q Consensus       194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~-~~~~~~F-~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~  271 (394)
                      ..++++..+..+    ..+.|+|..|+||||+...+.-+ ....... .+.+.+..........+...+....+......
T Consensus        65 ~q~~~i~~i~~g----~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~  140 (235)
T 3llm_A           65 FESEILEAISQN----SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS  140 (235)
T ss_dssp             GHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred             HHHHHHHHHhcC----CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence            445566666553    47889999999999866544322 1111112 22333333333333444455554444321110


Q ss_pred             ---------------cccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC
Q 016120          272 ---------------VIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD  303 (394)
Q Consensus       272 ---------------~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~  303 (394)
                                     .++-- +...+...+...+.+- -+||+|.+..
T Consensus       141 ~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~  187 (235)
T 3llm_A          141 CGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHE  187 (235)
T ss_dssp             EEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTC-CEEEECCTTS
T ss_pred             EEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCC-cEEEEECCcc
Confidence                           01112 5666666666544433 4789999976

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=94.19  E-value=0.028  Score=52.31  Aligned_cols=24  Identities=13%  Similarity=-0.006  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+++|+|..|+|||||++.+..
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999876

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=94.15  E-value=0.025  Score=48.85  Aligned_cols=21  Identities=19%  Similarity=0.139  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +|+|.|+.|+||||+|+.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999976

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=94.15  E-value=0.16  Score=48.64  Aligned_cols=35  Identities=23%  Similarity=0.200  Sum_probs=26.5

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -++++.|..-..+ ..++|+|.+|+|||+|++.+.+
T Consensus       163 iraID~l~PigrG-QR~lIfg~~g~GKT~Ll~~Ia~  197 (427)
T 3l0o_A          163 TRLIDLFAPIGKG-QRGMIVAPPKAGKTTILKEIAN  197 (427)
T ss_dssp             HHHHHHHSCCBTT-CEEEEEECTTCCHHHHHHHHHH
T ss_pred             chhhhhcccccCC-ceEEEecCCCCChhHHHHHHHH
Confidence            3566777654323 3568999999999999998887

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=94.12  E-value=0.02  Score=51.75  Aligned_cols=22  Identities=14%  Similarity=0.027  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..|+|+|+.|+||||+++.+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999976

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.10  E-value=0.022  Score=49.87  Aligned_cols=22  Identities=23%  Similarity=0.179  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.+..
T Consensus        23 e~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4889999999999999999875

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=94.09  E-value=0.088  Score=53.42  Aligned_cols=22  Identities=18%  Similarity=0.243  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++.|.|.+|+||||++..+..
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~  226 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVAD  226 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            5788999999999999988876

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=94.07  E-value=0.03  Score=52.02  Aligned_cols=23  Identities=26%  Similarity=0.198  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+++|+|+.|+||||+++.++.
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            46999999999999999998865

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=94.05  E-value=0.039  Score=46.57  Aligned_cols=34  Identities=15%  Similarity=0.151  Sum_probs=25.2

Q ss_pred             HHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          199 FDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       199 ~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +..+...+.....|+|+|.+|+|||||...+.+.
T Consensus         6 ~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A            6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             HHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             HHHHhccCCCceEEEEECCCCCCHHHHHHHHhcC
Confidence            3334333234567889999999999999999874

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=93.99  E-value=0.13  Score=47.90  Aligned_cols=51  Identities=16%  Similarity=0.128  Sum_probs=35.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      -.++.|.|.+|+||||||..++.+...+.  ..++|++..  .+...+...++..
T Consensus        68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~  118 (315)
T 3bh0_A           68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT  118 (315)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence            45888999999999999988876422222  567777654  4566666666544

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=93.97  E-value=0.029  Score=47.69  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++++|+|..|+|||||+..+..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHH
Confidence            57899999999999999999886

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=93.94  E-value=0.41  Score=47.54  Aligned_cols=92  Identities=12%  Similarity=-0.024  Sum_probs=53.3

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC------------------
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV------------------  270 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------------------  270 (394)
                      -.++.|.|.+|+||||||..+..+...+ +=..++|++.  ..+..++...++.........                  
T Consensus       242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~--E~s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~  318 (503)
T 1q57_A          242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAML--EESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQW  318 (503)
T ss_dssp             TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEES--SSCHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHH
T ss_pred             CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEec--cCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHH
Confidence            4578899999999999998887642222 1134667655  334566666654432211100                  


Q ss_pred             ---------c---cccCc-CHHHHHHHHHHHcc-CCeEEEEEeCCCC
Q 016120          271 ---------S---VIIGE-DYQLKKSILRDYLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       271 ---------~---~~~~~-~~~~~~~~l~~~l~-~kr~LlVlDdv~~  303 (394)
                               .   ..... +..++...+....+ .+.-+||+|.+..
T Consensus       319 ~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~  365 (503)
T 1q57_A          319 FDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISI  365 (503)
T ss_dssp             HHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTC
T ss_pred             HHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchh
Confidence                     0   00112 56666666666543 2445899998865

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=93.93  E-value=0.053  Score=53.67  Aligned_cols=24  Identities=17%  Similarity=0.182  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+++|+|.+|+|||||++.+..
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHH
Confidence            456999999999999999998876

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=93.92  E-value=0.088  Score=59.57  Aligned_cols=89  Identities=15%  Similarity=-0.008  Sum_probs=58.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILR  286 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~  286 (394)
                      .-.++.|.|.+|+||||||.++...  ....=..++|++....++...     ++.++.......-.+. +.+++...+.
T Consensus       382 ~G~lilI~G~pGsGKTtLaLq~a~~--~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~  454 (1706)
T 3cmw_A          382 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD  454 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence            3468889999999999999888763  222234678998887777542     5556543221111122 5566666666


Q ss_pred             HHc-cCCeEEEEEeCCCC
Q 016120          287 DYL-TNKKYFIVLDDVFD  303 (394)
Q Consensus       287 ~~l-~~kr~LlVlDdv~~  303 (394)
                      ... +.+.-++|+|-+..
T Consensus       455 ~lv~~~~~~lVVIDSL~a  472 (1706)
T 3cmw_A          455 ALARSGAVDVIVVDSVAA  472 (1706)
T ss_dssp             HHHHHTCCSEEEESCSTT
T ss_pred             HHHHhcCCCEEEECCHHH
Confidence            554 34567999999976

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.91  E-value=0.029  Score=50.78  Aligned_cols=22  Identities=18%  Similarity=0.226  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.++.
T Consensus        34 e~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4899999999999999999964

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=93.87  E-value=0.03  Score=48.93  Aligned_cols=21  Identities=10%  Similarity=-0.018  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .|.|.|+.|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999976

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.85  E-value=0.031  Score=50.36  Aligned_cols=22  Identities=18%  Similarity=0.206  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.+..
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4899999999999999999987

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=93.85  E-value=0.03  Score=47.42  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|+|+|.+|+|||||.+.+...
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999873

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=93.83  E-value=0.21  Score=53.64  Aligned_cols=58  Identities=19%  Similarity=0.268  Sum_probs=36.5

Q ss_pred             HHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCCCCCCcEEEEecCChHHHhhchhcCCCceee
Q 016120          284 ILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKIRR  347 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~  347 (394)
                      .+...|-.++-+||||.--+  +......+...+...  |..||++|.+.+.....    ..+++.
T Consensus       911 aLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l----~DrViv  970 (986)
T 2iw3_A          911 VLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNL----TEEVWA  970 (986)
T ss_dssp             HHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTT----CCEEEC
T ss_pred             HHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHh----CCEEEE
Confidence            34445667788999999766  444445555555433  23588888887776655    345555

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=93.83  E-value=0.031  Score=50.32  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.+..
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~G   57 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQR   57 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4889999999999999999965

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=93.83  E-value=0.036  Score=49.78  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...++.+.|.||+||||++..+..
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~   36 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGR   36 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHH
Confidence            467888999999999999999875

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=93.82  E-value=0.11  Score=59.60  Aligned_cols=107  Identities=16%  Similarity=0.002  Sum_probs=65.2

Q ss_pred             eecccHHHHHHHHh-cCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 016120          190 EFERGREELFDLLI-EGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPS  268 (394)
Q Consensus       190 Gr~~~~~~i~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~  268 (394)
                      +...-...|-..|. ..=+.-.++.|.|.+|+||||||.++...  ....=..++|++....++...     ++.++...
T Consensus       363 ~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~--~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~  435 (2050)
T 3cmu_A          363 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDI  435 (2050)
T ss_dssp             EECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCT
T ss_pred             eeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcCCCHHHHH-----HHHcCCCH
Confidence            33334444444443 12123468899999999999999998873  322224678888877776542     55555432


Q ss_pred             CCccccCc-CHHHHHHHHHHHc-cCCeEEEEEeCCCC
Q 016120          269 RVSVIIGE-DYQLKKSILRDYL-TNKKYFIVLDDVFD  303 (394)
Q Consensus       269 ~~~~~~~~-~~~~~~~~l~~~l-~~kr~LlVlDdv~~  303 (394)
                      ....-.+. +.+++...+.... +.+.-+||+|-+..
T Consensus       436 ~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~a  472 (2050)
T 3cmu_A          436 DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA  472 (2050)
T ss_dssp             TTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred             HHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHH
Confidence            21101122 6667777666555 34567999999865

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=93.80  E-value=0.031  Score=49.02  Aligned_cols=22  Identities=9%  Similarity=0.028  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..|.|.|++|+||||+|+.+..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999976

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=93.80  E-value=0.35  Score=46.32  Aligned_cols=44  Identities=16%  Similarity=0.055  Sum_probs=30.2

Q ss_pred             ccceecccHHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEG-PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++|....+.++.+.+..- ..... +.|.|.+|+|||++|+.+..
T Consensus       138 ~~ig~s~~m~~l~~~i~~~a~~~~~-vli~Ge~GtGK~~lAr~ih~  182 (387)
T 1ny5_A          138 EYVFESPKMKEILEKIKKISCAECP-VLITGESGVGKEVVARLIHK  182 (387)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSC-EEEECSTTSSHHHHHHHHHH
T ss_pred             hhhhccHHhhHHHHHHHHhcCCCCC-eEEecCCCcCHHHHHHHHHH
Confidence            4556555666666555432 22344 47999999999999999986

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.79  E-value=0.034  Score=49.89  Aligned_cols=23  Identities=17%  Similarity=0.112  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|+|||||.+.++.
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G   50 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLER   50 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999999964

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=93.79  E-value=0.031  Score=49.27  Aligned_cols=21  Identities=14%  Similarity=0.085  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .|.|.|+.|+||||+|+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999976

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=93.79  E-value=0.036  Score=56.70  Aligned_cols=41  Identities=12%  Similarity=0.102  Sum_probs=35.2

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|.+..++.+...+..+    ..+.|+|++|+||||||+.+..
T Consensus        42 ~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~   82 (604)
T 3k1j_A           42 QVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE   82 (604)
T ss_dssp             HCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence            8899988888877777654    4778999999999999999987

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=93.78  E-value=0.033  Score=49.67  Aligned_cols=23  Identities=22%  Similarity=0.186  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+++|.|++|+||||+|+.+..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999976

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=93.77  E-value=0.041  Score=45.61  Aligned_cols=23  Identities=9%  Similarity=0.147  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..++|+|.+|+|||||...+...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=93.75  E-value=0.033  Score=52.55  Aligned_cols=22  Identities=14%  Similarity=0.246  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|+|.|+.|+||||||..+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            5899999999999999999887

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=93.69  E-value=0.034  Score=47.53  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...++|+|..|+|||||.+.+...
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            457899999999999999998764

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=93.69  E-value=0.08  Score=45.79  Aligned_cols=50  Identities=10%  Similarity=-0.011  Sum_probs=30.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHH
Q 016120          211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIK  262 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~  262 (394)
                      .|+|-|.-|+||||.++.+++  ..+..-..+++..-............++.
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~   51 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILL   51 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence            467889999999999999987  34333223344433333334444555543

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=93.68  E-value=0.037  Score=49.10  Aligned_cols=23  Identities=13%  Similarity=0.063  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...|.|.|+.|+||||+|+.+..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999999987

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=93.68  E-value=0.047  Score=47.62  Aligned_cols=36  Identities=11%  Similarity=0.069  Sum_probs=26.2

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          195 REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +..+..++.. -+....+.|+|++|+||||+|..+++
T Consensus        45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHH
Confidence            4455555543 22334688999999999999988887

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.67  E-value=0.034  Score=50.43  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.+..
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999975

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=93.61  E-value=0.036  Score=51.07  Aligned_cols=22  Identities=9%  Similarity=0.291  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|.|.|++|+||||+|+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999999986

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=93.58  E-value=0.32  Score=47.56  Aligned_cols=50  Identities=16%  Similarity=0.121  Sum_probs=32.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIK  262 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~  262 (394)
                      -.++.|.|.+|+||||+|..++.+...+  =..++|++..  .+...+...++.
T Consensus       197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~  246 (444)
T 3bgw_A          197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIV  246 (444)
T ss_dssp             SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHH
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHH
Confidence            4588899999999999998887642222  1245666543  334444444443

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=93.58  E-value=0.074  Score=47.16  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .-..|.|.|+.|+||||+++.+...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            3468899999999999999999873

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.57  E-value=0.24  Score=50.36  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -..++|+|+.|+|||||++.+..
T Consensus       369 Ge~~~ivG~sGsGKSTll~~l~g  391 (587)
T 3qf4_A          369 GSLVAVLGETGSGKSTLMNLIPR  391 (587)
T ss_dssp             TCEEEEECSSSSSHHHHHHTTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45899999999999999998865

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=93.51  E-value=0.043  Score=52.26  Aligned_cols=24  Identities=25%  Similarity=0.174  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+++|+|+.|+||||+++.++.
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHh
Confidence            356999999999999999998875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=93.51  E-value=0.037  Score=50.77  Aligned_cols=22  Identities=14%  Similarity=0.003  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.++.
T Consensus        48 e~~~liG~NGsGKSTLlk~l~G   69 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNA   69 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            4889999999999999999975

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=93.47  E-value=0.06  Score=52.60  Aligned_cols=102  Identities=12%  Similarity=0.202  Sum_probs=55.1

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccC----eeEEEEeCCCCC-HHHHHHHHHHHhCCCCCCc-
Q 016120          198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFD----CLAWVRVSIAYD-FGKMLDDIIKSVMPPSRVS-  271 (394)
Q Consensus       198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~----~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~~-  271 (394)
                      .++.|..-..+- .++|.|..|+|||+|+..+.+.  ...+-+    .++++-+++... +.++..++...-......- 
T Consensus       141 aID~l~pigrGQ-r~~Ifgg~G~GKt~L~~~Ia~~--~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV  217 (465)
T 3vr4_D          141 AIDHLNTLVRGQ-KLPVFSGSGLPHKELAAQIARQ--ATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMF  217 (465)
T ss_dssp             HHHTTSCCBTTC-BCCEEECTTSCHHHHHHHHHHH--CBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEE
T ss_pred             EEecccccccCC-EEEEeCCCCcChHHHHHHHHHH--HHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEE
Confidence            455554432223 3578999999999999999884  332223    566776666543 4455555443210000000 


Q ss_pred             -cccCc-C-----HHHHHHHHHHHcc---CCeEEEEEeCCC
Q 016120          272 -VIIGE-D-----YQLKKSILRDYLT---NKKYFIVLDDVF  302 (394)
Q Consensus       272 -~~~~~-~-----~~~~~~~l~~~l~---~kr~LlVlDdv~  302 (394)
                       ...+. .     .....-.+.++++   ++..||++||+.
T Consensus       218 ~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT  258 (465)
T 3vr4_D          218 MNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT  258 (465)
T ss_dssp             EEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence             00111 1     1122234555553   789999999974

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=93.47  E-value=0.1  Score=55.95  Aligned_cols=47  Identities=17%  Similarity=0.176  Sum_probs=30.3

Q ss_pred             cCCeEEEEEeCCCC--CchhHHHH----HhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          290 TNKKYFIVLDDVFD--NSEIWSDL----EELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       290 ~~kr~LlVlDdv~~--~~~~~~~l----~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      ..++-|++||..-.  ++..-..+    ...+.. ..|+.||++|.+.+++..+
T Consensus       739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~-~~g~~vl~aTH~~el~~la  791 (934)
T 3thx_A          739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTALA  791 (934)
T ss_dssp             CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH-TTCCEEEEEESCGGGGGGG
T ss_pred             ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEEcCcHHHHHHh
Confidence            46778999999976  33322222    223321 2478899999998877654

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=93.45  E-value=0.023  Score=52.51  Aligned_cols=24  Identities=13%  Similarity=0.169  Sum_probs=18.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +..+|+|.|..|+||||+|+.+..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999876

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.45  E-value=0.036  Score=47.55  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...++|+|..|+|||||.+.+...
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            356889999999999999999864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=93.45  E-value=0.046  Score=51.44  Aligned_cols=23  Identities=13%  Similarity=0.286  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|.|+|+.|+||||||..+..
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999987

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=93.43  E-value=0.064  Score=51.39  Aligned_cols=36  Identities=8%  Similarity=0.009  Sum_probs=26.5

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+++.+.-.-+...+++|+|++|+|||||++.+..
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            344444433333456899999999999999999986

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=93.35  E-value=0.052  Score=45.73  Aligned_cols=24  Identities=8%  Similarity=0.112  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...|+++|.+|+|||||...+...
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999999874

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=93.34  E-value=0.048  Score=44.49  Aligned_cols=23  Identities=13%  Similarity=0.160  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +.|.++|.+|+|||||...+.+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999998764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=93.33  E-value=0.046  Score=49.61  Aligned_cols=113  Identities=19%  Similarity=0.180  Sum_probs=57.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEe-CCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRV-SIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD  287 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v-s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~  287 (394)
                      -.+++|+|+.|+|||||.+.+..  .+...+...+++.- .-.+-.... ..+   +. +    ..+..+...+...+..
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~~-~~~---v~-q----~~~gl~~~~l~~~la~   93 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHK-KSI---VN-Q----REVGEDTKSFADALRA   93 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCS-SSE---EE-E----EEBTTTBSCHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCCc-cee---ee-H----HHhCCCHHHHHHHHHH
Confidence            46899999999999999998876  22211233333311 100000000 000   00 0    0000011122445555


Q ss_pred             HccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhh
Q 016120          288 YLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLAS  336 (394)
Q Consensus       288 ~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~  336 (394)
                      .|..++=+|++|...+ .+....+....   ..|.-|++||.+.++...
T Consensus        94 aL~~~p~illlDEp~D-~~~~~~~l~~~---~~g~~vl~t~H~~~~~~~  138 (261)
T 2eyu_A           94 ALREDPDVIFVGEMRD-LETVETALRAA---ETGHLVFGTLHTNTAIDT  138 (261)
T ss_dssp             HHHHCCSEEEESCCCS-HHHHHHHHHHH---HTTCEEEEEECCSSHHHH
T ss_pred             HHhhCCCEEEeCCCCC-HHHHHHHHHHH---ccCCEEEEEeCcchHHHH
Confidence            6655666888899876 54444433322   246678888887665443

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=93.33  E-value=0.043  Score=51.40  Aligned_cols=22  Identities=9%  Similarity=0.157  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|.|+|+.|+||||||+.+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999986

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=93.28  E-value=0.059  Score=47.65  Aligned_cols=116  Identities=15%  Similarity=0.087  Sum_probs=60.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC------c---c-------
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV------S---V-------  272 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~------~---~-------  272 (394)
                      -.++.|.|.+|+||||||..++..  ....=..++|++...  ....+...+ ..++.....      -   .       
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~~~--~~~~~~~v~~~~~e~--~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~   97 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFLWN--GLKMGEPGIYVALEE--HPVQVRQNM-AQFGWDVKPYEEKGMFAMVDAFTAGIG   97 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHH--HHHTTCCEEEEESSS--CHHHHHHHH-HTTTCCCHHHHHHTSEEEEECSTTTTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEccC--CHHHHHHHH-HHcCCCHHHHhhCCcEEEEecchhhcc
Confidence            358899999999999999877652  111123566776443  344443333 233221100      0   0       


Q ss_pred             ---------ccCc-CHHHHHHHHHHHcc-CCeEEEEEeCCCC----CchhHH----HHHhhCCCCCCCcEEEEecCCh
Q 016120          273 ---------IIGE-DYQLKKSILRDYLT-NKKYFIVLDDVFD----NSEIWS----DLEELLPDDENGSRVLITVTDP  331 (394)
Q Consensus       273 ---------~~~~-~~~~~~~~l~~~l~-~kr~LlVlDdv~~----~~~~~~----~l~~~l~~~~~gs~IivTTR~~  331 (394)
                               .... +...+...+.+.++ .+.-++|+|.+..    +.....    .+...+  ...|..||+|+...
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~--~~~~~~vi~~~h~~  173 (247)
T 2dr3_A           98 KSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVL--AGTGCTSIFVSQVS  173 (247)
T ss_dssp             C--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHH--HHTTCEEEEEEECC
T ss_pred             cccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHH--HHCCCeEEEEecCC
Confidence                     0011 45555666666653 2445899999865    121222    222222  13466777776643

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=93.28  E-value=0.043  Score=48.60  Aligned_cols=24  Identities=21%  Similarity=0.091  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .-.+|+|.|+.|+||||+++.+..
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~   42 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEK   42 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            346899999999999999999987

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=93.28  E-value=0.53  Score=44.44  Aligned_cols=25  Identities=12%  Similarity=0.151  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +...++++|.+|+|||||...+...
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~  190 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTA  190 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4668999999999999999999874

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=93.26  E-value=0.49  Score=52.83  Aligned_cols=23  Identities=22%  Similarity=0.180  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -..++|||..|+|||||++.+..
T Consensus      1105 Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1105 GQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             TCEEEEECSTTSSTTSHHHHHTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            35789999999999999999975

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=93.22  E-value=0.045  Score=50.87  Aligned_cols=24  Identities=8%  Similarity=0.153  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .-.+++|+|+.|+|||||++.+..
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhh
Confidence            345889999999999999998864

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=93.15  E-value=0.046  Score=44.55  Aligned_cols=22  Identities=18%  Similarity=0.386  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .|.++|.+|+|||||...+...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=93.14  E-value=0.077  Score=44.09  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +...|+|+|.+|+|||||...+.+.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567889999999999999998764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=93.10  E-value=0.046  Score=49.88  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.++.|+|.+|+|||||+..+..
T Consensus        30 G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            35889999999999999998875

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.10  E-value=0.052  Score=53.04  Aligned_cols=23  Identities=22%  Similarity=0.208  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|+|+|.+|+||||++..+..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988876

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=93.07  E-value=0.055  Score=48.01  Aligned_cols=24  Identities=13%  Similarity=-0.007  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+|+|+|+.|+||||+++.+..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999876

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=93.07  E-value=0.05  Score=50.68  Aligned_cols=23  Identities=22%  Similarity=0.156  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|.|+|+.|+||||||..+..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHHH
Confidence            35889999999999999999976

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=93.01  E-value=0.041  Score=51.16  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|+|||||++.+..
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCchHHHHHHHHHc
Confidence            45899999999999999999965

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=93.01  E-value=0.051  Score=44.99  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEEECCCCccHHHHHHHHhcC
Confidence            456889999999999999998764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=92.99  E-value=0.05  Score=50.01  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -.+++|+|.+|+|||||++.+...
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            358899999999999999988763

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=92.98  E-value=0.052  Score=49.54  Aligned_cols=21  Identities=14%  Similarity=0.434  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++|+|+.|+|||||.+.++.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999875

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=92.92  E-value=0.1  Score=47.44  Aligned_cols=36  Identities=6%  Similarity=-0.008  Sum_probs=27.0

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .-+..||....+...-+.++|++|+|||.+|..+.+
T Consensus        91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~  126 (267)
T 1u0j_A           91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            335556655423345688999999999999999987

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=92.91  E-value=0.05  Score=44.63  Aligned_cols=24  Identities=4%  Similarity=0.113  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .--|.|+|.+|+|||||...+.+.
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            446789999999999999998764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=92.89  E-value=0.047  Score=53.01  Aligned_cols=24  Identities=21%  Similarity=0.268  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+++|+|..|+|||||.+.+..
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhC
Confidence            467999999999999999999976

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=92.88  E-value=0.15  Score=50.33  Aligned_cols=101  Identities=16%  Similarity=0.175  Sum_probs=54.8

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHhcCcccccccCe-eEEEEeCCCCC-HHHHHHHHHHHhCCCCCCc--
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFT-ADTYNNDHVKFYFDC-LAWVRVSIAYD-FGKMLDDIIKSVMPPSRVS--  271 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~~--  271 (394)
                      +.++.|..-..+ ..++|.|.+|+|||+|| ..+.+.  .  +-+. ++++-+++... +.++..++...-......-  
T Consensus       151 raID~l~PigrG-QR~~Ifg~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~  225 (502)
T 2qe7_A          151 KAIDSMIPIGRG-QRELIIGDRQTGKTTIAIDTIINQ--K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT  225 (502)
T ss_dssp             HHHHHSSCCBTT-CBCEEEECSSSCHHHHHHHHHHGG--G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred             eecccccccccC-CEEEEECCCCCCchHHHHHHHHHh--h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence            345555543322 35679999999999996 567663  2  2343 46777777654 4445555544221111100  


Q ss_pred             cccCc-CHHH-----HHHHHHHHc--cCCeEEEEEeCCC
Q 016120          272 VIIGE-DYQL-----KKSILRDYL--TNKKYFIVLDDVF  302 (394)
Q Consensus       272 ~~~~~-~~~~-----~~~~l~~~l--~~kr~LlVlDdv~  302 (394)
                      ...++ ....     ....+.+++  +|+..||++||+.
T Consensus       226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt  264 (502)
T 2qe7_A          226 ASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS  264 (502)
T ss_dssp             ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence            01111 1111     123344554  5799999999974

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=92.88  E-value=0.099  Score=49.28  Aligned_cols=35  Identities=17%  Similarity=0.189  Sum_probs=26.2

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++.+...-....+++|+|.+|+|||||.+.+..
T Consensus        43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34444443334567999999999999999999874

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=92.85  E-value=0.061  Score=49.72  Aligned_cols=23  Identities=17%  Similarity=0.026  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+++++|.+|+||||++..++.
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~  120 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLAL  120 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999886

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=92.82  E-value=0.099  Score=49.30  Aligned_cols=35  Identities=14%  Similarity=0.168  Sum_probs=25.7

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+.+.+.....+..+++|+|.+|+|||||+..+..
T Consensus        44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~   78 (341)
T 2p67_A           44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM   78 (341)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            34444433334578999999999999999988864

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=92.81  E-value=0.091  Score=51.98  Aligned_cols=102  Identities=13%  Similarity=0.167  Sum_probs=54.6

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHhcCcccccccCe-eEEEEeCCCCC-HHHHHHHHHHHhCCCCCCc--
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFT-ADTYNNDHVKFYFDC-LAWVRVSIAYD-FGKMLDDIIKSVMPPSRVS--  271 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~~--  271 (394)
                      +.++.|..-..+ ..++|.|.+|+|||+|| ..+.+.  .  .-+. ++++-+++... +.++..++...-......-  
T Consensus       164 raID~l~PigrG-QR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~  238 (515)
T 2r9v_A          164 KAIDSMIPIGRG-QRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVV  238 (515)
T ss_dssp             HHHHHHSCEETT-CBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred             cccccccccccC-CEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEE
Confidence            345666543222 35679999999999996 577763  2  2443 46777777654 4444445443211100000  


Q ss_pred             cccCc-CH-----HHHHHHHHHHc--cCCeEEEEEeCCCC
Q 016120          272 VIIGE-DY-----QLKKSILRDYL--TNKKYFIVLDDVFD  303 (394)
Q Consensus       272 ~~~~~-~~-----~~~~~~l~~~l--~~kr~LlVlDdv~~  303 (394)
                      ...++ ..     ......+.+++  +|+..||++||+..
T Consensus       239 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr  278 (515)
T 2r9v_A          239 ASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSK  278 (515)
T ss_dssp             ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence            00111 11     11122344554  57999999999743

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=92.75  E-value=0.064  Score=47.74  Aligned_cols=24  Identities=13%  Similarity=0.065  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...|+|.|..|+||||+++.+...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            357899999999999999999873

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=92.74  E-value=0.054  Score=45.78  Aligned_cols=23  Identities=17%  Similarity=0.338  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..|.++|.+|+|||||+..+...
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46789999999999999999764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=92.73  E-value=0.06  Score=44.04  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+++|.+|+|||||...+.+.
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            346789999999999999998764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=92.73  E-value=0.065  Score=45.39  Aligned_cols=25  Identities=12%  Similarity=-0.015  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ....|+|+|.+|+|||||...+.+.
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4557889999999999999998874

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=92.72  E-value=0.056  Score=44.40  Aligned_cols=22  Identities=18%  Similarity=0.164  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|+++|.+|+|||||...+.+.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            4789999999999999998753

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=92.71  E-value=0.06  Score=50.31  Aligned_cols=25  Identities=24%  Similarity=0.231  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..++++|+|+.|.|||||.+.+...
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhh
Confidence            4689999999999999999999853

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=92.70  E-value=0.092  Score=45.00  Aligned_cols=34  Identities=12%  Similarity=0.026  Sum_probs=24.6

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +++.+.-.. ....|+++|.+|+|||||...+.++
T Consensus        15 ~l~~~~~~~-~~~ki~lvG~~~vGKSsLi~~l~~~   48 (198)
T 1f6b_A           15 VLQFLGLYK-KTGKLVFLGLDNAGKTTLLHMLKDD   48 (198)
T ss_dssp             HHHHHTCTT-CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             HHHHhhccC-CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            445553322 3346789999999999999998763

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=92.69  E-value=0.1  Score=52.03  Aligned_cols=24  Identities=17%  Similarity=0.105  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+|+|+|.+|+||||++..+..
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~  123 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAY  123 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999988874

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=92.65  E-value=0.063  Score=49.88  Aligned_cols=24  Identities=8%  Similarity=0.102  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...++.|+|+.|+||||||..+..
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCccCHHHHHHHHHH
Confidence            356889999999999999999986

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=92.64  E-value=0.062  Score=44.20  Aligned_cols=23  Identities=17%  Similarity=0.251  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      --|.++|.+|+|||||...+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45789999999999999998764

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=92.62  E-value=0.19  Score=56.99  Aligned_cols=89  Identities=15%  Similarity=-0.006  Sum_probs=64.0

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccc-CcCHHHHHHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVII-GEDYQLKKSILR  286 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~-~~~~~~~~~~l~  286 (394)
                      +-++|-|+|+.|+||||||.++..  +.+..=..++|+.+.+.+++..     ++.++.....---. +++.++....+.
T Consensus      1430 rg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A         1430 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence            346899999999999999999887  4555556788999888888764     77777654321001 114566666777


Q ss_pred             HHcc-CCeEEEEEeCCCC
Q 016120          287 DYLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       287 ~~l~-~kr~LlVlDdv~~  303 (394)
                      ..++ +..-++|+|-|-.
T Consensus      1503 ~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A         1503 ALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp             HHHHHTCCSEEEESCSTT
T ss_pred             HHHHcCCCCEEEEccHHh
Confidence            7764 5677999999854

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=92.61  E-value=0.11  Score=46.77  Aligned_cols=38  Identities=18%  Similarity=0.190  Sum_probs=28.3

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          195 REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +.++.+.+.........|+++|.+|+|||||...+...
T Consensus        22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            33445555554445667899999999999999998864

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=92.58  E-value=0.067  Score=48.26  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ++|+|.|-||+||||+|..+..
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~   23 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTS   23 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEecCCCCcHHHHHHHHHH
Confidence            5788889999999999988876

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=92.58  E-value=0.064  Score=44.89  Aligned_cols=23  Identities=13%  Similarity=0.052  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..|+|+|.+|+|||||...+...
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=92.56  E-value=0.078  Score=43.60  Aligned_cols=24  Identities=21%  Similarity=0.149  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .--|+++|.+|+|||||...+.+.
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            346789999999999999988764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=92.53  E-value=0.49  Score=40.66  Aligned_cols=24  Identities=33%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|.|+|.+|+|||||...+.+.
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            456889999999999999998864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=92.50  E-value=0.13  Score=46.55  Aligned_cols=37  Identities=14%  Similarity=0.173  Sum_probs=27.3

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .+++..+...+.....|.++|.+|+|||||...+.+.
T Consensus        26 ~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           26 LELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            3344445444444668889999999999999998864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=92.50  E-value=0.083  Score=43.44  Aligned_cols=22  Identities=18%  Similarity=0.223  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      --|+|+|.+|+|||||...+..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4578999999999999999864

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=92.49  E-value=0.074  Score=48.68  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++|+|.|-||+||||+|..+..
T Consensus         2 MkvIavs~KGGvGKTT~a~nLA~   24 (289)
T 2afh_E            2 MRQCAIYGKGGIGKSTTTQNLVA   24 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCcCcHHHHHHHHHH
Confidence            36788899999999999988875

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=92.48  E-value=0.18  Score=44.20  Aligned_cols=23  Identities=13%  Similarity=-0.007  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -..|.|.|+.|+||||+++.+..
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            35788999999999999999987

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=92.47  E-value=0.063  Score=43.98  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      --|+|+|.+|+|||||...+.+.
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35789999999999999998764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.45  E-value=0.068  Score=43.83  Aligned_cols=22  Identities=14%  Similarity=0.209  Sum_probs=19.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|.+|+|||||...+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988764

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=92.44  E-value=0.27  Score=48.48  Aligned_cols=102  Identities=13%  Similarity=0.154  Sum_probs=55.0

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHhcCcccccccC-eeEEEEeCCCCC-HHHHHHHHHHHhCCCCCCc--
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFT-ADTYNNDHVKFYFD-CLAWVRVSIAYD-FGKMLDDIIKSVMPPSRVS--  271 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~~--  271 (394)
                      +.++.|..-..+ ..++|.|..|+|||+|| ..+.|.  .  +-+ .++++-+++... +.++..++...-......-  
T Consensus       151 kaID~l~PigrG-QR~~Ifg~~g~GKT~l~l~~I~n~--~--~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~  225 (513)
T 3oaa_A          151 KAVDSMIPIGRG-QRELIIGDRQTGKTALAIDAIINQ--R--DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVV  225 (513)
T ss_dssp             HHHHHHSCCBTT-CBCEEEESSSSSHHHHHHHHHHTT--S--SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEE
T ss_pred             eeeccccccccC-CEEEeecCCCCCcchHHHHHHHhh--c--cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEE
Confidence            345666543322 35579999999999996 566662  2  233 357888887654 4445555443211111000  


Q ss_pred             cccCc-CH-----HHHHHHHHHHc--cCCeEEEEEeCCCC
Q 016120          272 VIIGE-DY-----QLKKSILRDYL--TNKKYFIVLDDVFD  303 (394)
Q Consensus       272 ~~~~~-~~-----~~~~~~l~~~l--~~kr~LlVlDdv~~  303 (394)
                      ...++ ..     ......+.+++  +|+..||++||+..
T Consensus       226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr  265 (513)
T 3oaa_A          226 ATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSK  265 (513)
T ss_dssp             ECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred             ECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence            00111 11     11122334444  58999999999753

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=92.44  E-value=0.077  Score=44.95  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +...|+|+|.+|+|||||...+.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567889999999999999999864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=92.42  E-value=0.084  Score=44.51  Aligned_cols=25  Identities=20%  Similarity=0.203  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ....|.|+|.+|+|||||...+.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcC
Confidence            3457889999999999999999875

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=92.42  E-value=0.11  Score=51.37  Aligned_cols=89  Identities=11%  Similarity=0.149  Sum_probs=47.5

Q ss_pred             EEEEEcCCCccHHHHH-HHHhcCcccccccC-eeEEEEeCCCCC-HHHHHHHHHHHhCC--------CCCCccccCcCHH
Q 016120          211 VVAILDSSGFDKTVFT-ADTYNNDHVKFYFD-CLAWVRVSIAYD-FGKMLDDIIKSVMP--------PSRVSVIIGEDYQ  279 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~l~~--------~~~~~~~~~~~~~  279 (394)
                      .++|.|.+|+|||+|| ..+.+.  ..  -+ .++++-+++... +.++..++...-..        ....+.....-..
T Consensus       165 R~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~  240 (507)
T 1fx0_A          165 RELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP  240 (507)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred             EEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence            5679999999999996 577773  22  34 346777777654 33333333321000        0000000000112


Q ss_pred             HHHHHHHHHc--cCCeEEEEEeCCCC
Q 016120          280 LKKSILRDYL--TNKKYFIVLDDVFD  303 (394)
Q Consensus       280 ~~~~~l~~~l--~~kr~LlVlDdv~~  303 (394)
                      .....+.+++  +|+..||++||+..
T Consensus       241 ~~a~tiAEyfrd~G~dVLli~Dsltr  266 (507)
T 1fx0_A          241 YTGAALAEYFMYRERHTLIIYDDLSK  266 (507)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred             HHHHHHHHHHHHcCCcEEEEEecHHH
Confidence            2233334444  58999999999754

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=92.42  E-value=0.2  Score=53.50  Aligned_cols=47  Identities=13%  Similarity=0.115  Sum_probs=30.2

Q ss_pred             cCCeEEEEEeCCCC--CchhHHHH----HhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          290 TNKKYFIVLDDVFD--NSEIWSDL----EELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       290 ~~kr~LlVlDdv~~--~~~~~~~l----~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      ..++-|++||..-.  ++..-..+    ...+. ...|+.||++|.+.+++...
T Consensus       750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~-~~~g~tvl~vTH~~el~~l~  802 (918)
T 3thx_B          750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFI-RDVKSLTLFVTHYPPVCELE  802 (918)
T ss_dssp             CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHH-HTTCCEEEEECSCGGGGGHH
T ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-HhcCCeEEEEeCcHHHHHHH
Confidence            46788999999977  33322222    22221 13478999999998776654

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=92.39  E-value=0.17  Score=44.69  Aligned_cols=108  Identities=17%  Similarity=0.229  Sum_probs=55.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----ccccCc-CHHHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV-----SVIIGE-DYQLKKS  283 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-----~~~~~~-~~~~~~~  283 (394)
                      -.|.+.|.||+||||+|..+.... ....++. ..+.+....+...  ...+..+......     ...... +....  
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l-~~~G~~V-~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~--   80 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQ-LRQGVRV-MAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL--   80 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHH-HHTTCCE-EEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH--
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHH-HHCCCCE-EEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH--
Confidence            346788999999999998887632 1223443 3444443323221  1122222211100     000111 32222  


Q ss_pred             HHHHHccCCeEEEEEeCCCC-------CchhHHHHHhhCCCCCCCcEEEEecCCh
Q 016120          284 ILRDYLTNKKYFIVLDDVFD-------NSEIWSDLEELLPDDENGSRVLITVTDP  331 (394)
Q Consensus       284 ~l~~~l~~kr~LlVlDdv~~-------~~~~~~~l~~~l~~~~~gs~IivTTR~~  331 (394)
                       +.    .+.=++|+|++-.       ....|.++...++   .|..|+.|+.-+
T Consensus        81 -L~----~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq  127 (228)
T 2r8r_A           81 -LK----AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ  127 (228)
T ss_dssp             -HH----HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred             -Hh----cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence             22    2456899998764       2346788776553   355688887744

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.38  E-value=0.07  Score=43.83  Aligned_cols=23  Identities=17%  Similarity=0.244  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      --|.++|.+|+|||||...+.+.
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46789999999999999998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=92.36  E-value=0.068  Score=45.04  Aligned_cols=24  Identities=13%  Similarity=0.104  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|.|+|.+|+|||||...+.+.
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcC
Confidence            456789999999999999998764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.35  E-value=0.077  Score=46.01  Aligned_cols=25  Identities=12%  Similarity=-0.015  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ....|.++|.+|+|||||...+.+.
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4567889999999999999998874

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=92.35  E-value=0.066  Score=43.72  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      --|+++|.+|+|||||...+.+.
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35789999999999999888754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=92.33  E-value=0.075  Score=44.81  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+.+|+|..|+|||||+..++-
T Consensus        27 g~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4889999999999999998864

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=92.30  E-value=0.38  Score=45.75  Aligned_cols=46  Identities=17%  Similarity=0.026  Sum_probs=30.4

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .++|....+.++.+.+..-......+.|.|.+|+||+++|+.++..
T Consensus       130 ~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~  175 (368)
T 3dzd_A          130 EFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRY  175 (368)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHh
Confidence            5667666665555544321112233568999999999999999863

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=92.28  E-value=0.096  Score=43.48  Aligned_cols=25  Identities=12%  Similarity=0.242  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...-|+|+|.+|+|||||...+.+.
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4567889999999999999998764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=92.26  E-value=0.056  Score=48.85  Aligned_cols=24  Identities=13%  Similarity=0.106  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +...|+|.|..|+||||+|+.+..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998887

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=92.26  E-value=0.067  Score=45.19  Aligned_cols=23  Identities=13%  Similarity=-0.097  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..-|.|+|.+|+|||||.+.+.+
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~   36 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYS   36 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHh
Confidence            34678999999999999987765

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=92.23  E-value=0.072  Score=50.72  Aligned_cols=23  Identities=26%  Similarity=0.250  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...++|+|..|+|||||++.+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~g  192 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAA  192 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998865

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=92.22  E-value=0.092  Score=43.65  Aligned_cols=25  Identities=32%  Similarity=0.381  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ....|.|+|.+|+|||||...+.+.
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4567889999999999999988764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=92.22  E-value=0.072  Score=45.11  Aligned_cols=24  Identities=13%  Similarity=0.076  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .--|+|+|.+|+|||||...+.+.
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            456789999999999999877654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=92.20  E-value=0.071  Score=43.62  Aligned_cols=21  Identities=10%  Similarity=0.014  Sum_probs=18.6

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |+++|.+|+|||||...+.+.
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999988653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=92.19  E-value=0.087  Score=43.77  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...-|+|+|.+|+|||||...+.+.
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC
Confidence            4557889999999999999999764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=92.12  E-value=0.075  Score=44.68  Aligned_cols=22  Identities=9%  Similarity=0.099  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|+|+|.+|+|||||...+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4789999999999999998875

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.05  E-value=0.08  Score=43.92  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            456889999999999999998754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=92.04  E-value=0.088  Score=45.64  Aligned_cols=22  Identities=23%  Similarity=0.169  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+.|.|+.|+||||||..+..
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQ   56 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999999976

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=92.00  E-value=0.13  Score=47.70  Aligned_cols=32  Identities=25%  Similarity=0.334  Sum_probs=25.9

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHh
Q 016120          194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTY  230 (394)
Q Consensus       194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~  230 (394)
                      .++++.+.+..     .+++++|+.|+|||||.+.+.
T Consensus       155 gi~~L~~~l~G-----~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          155 GIDELVDYLEG-----FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             THHHHHHHTTT-----CEEEEECSTTSSHHHHHHHHH
T ss_pred             CHHHHHhhccC-----cEEEEECCCCCCHHHHHHHHH
Confidence            35666666642     478999999999999999998

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=91.99  E-value=0.059  Score=46.38  Aligned_cols=24  Identities=21%  Similarity=0.001  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -..++|+|..|+|||||.+.+...
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999988764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=91.98  E-value=0.068  Score=45.78  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ....|+|+|.+|+|||||...+..
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHh
Confidence            356788999999999999999853

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.97  E-value=0.079  Score=44.87  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .--|.|+|.+|+|||||...+.+.
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhC
Confidence            456789999999999999888764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=91.97  E-value=0.078  Score=43.47  Aligned_cols=23  Identities=13%  Similarity=0.147  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .-|+++|.+|+|||||...+.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46789999999999999988754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=91.94  E-value=0.085  Score=43.74  Aligned_cols=24  Identities=13%  Similarity=0.180  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|.|+|.+|+|||||...+.+.
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            457889999999999999998764

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=91.91  E-value=0.44  Score=49.90  Aligned_cols=22  Identities=23%  Similarity=0.160  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|.|||||.+.+..
T Consensus       577 ~i~~I~GpNGsGKSTlLr~iag  598 (765)
T 1ewq_A          577 ELVLITGPNMAGKSTFLRQTAL  598 (765)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHh
Confidence            5899999999999999988753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=91.87  E-value=0.55  Score=48.45  Aligned_cols=53  Identities=17%  Similarity=0.199  Sum_probs=30.8

Q ss_pred             HHHHccCCe--EEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEEEecCChHHHhhc
Q 016120          285 LRDYLTNKK--YFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       285 l~~~l~~kr--~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...|..++  -+|+||.--.  +...-..+...+.. ...|..||++|.+.+++..+
T Consensus       213 iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~  270 (670)
T 3ux8_A          213 LATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAA  270 (670)
T ss_dssp             HHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHC
T ss_pred             HHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhC
Confidence            334444443  4999999776  44333333332221 12366799999998876654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=91.87  E-value=0.1  Score=43.70  Aligned_cols=25  Identities=12%  Similarity=0.290  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...-|.|+|.+|+|||||...+.+.
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3457789999999999999998864

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=91.86  E-value=0.066  Score=44.60  Aligned_cols=24  Identities=8%  Similarity=0.059  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .--|.++|.+|+|||||...+.+.
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346789999999999999988764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=91.85  E-value=0.11  Score=42.62  Aligned_cols=24  Identities=21%  Similarity=0.077  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...|.++|.+|+|||||...+.+.
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            456889999999999999999754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=91.85  E-value=0.087  Score=44.17  Aligned_cols=24  Identities=13%  Similarity=0.220  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|.|+|.+|+|||||...+.+.
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            457889999999999999998764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=91.84  E-value=0.08  Score=45.01  Aligned_cols=24  Identities=17%  Similarity=0.063  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...|+++|.+|+|||||...+.+.
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            346789999999999999998864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=91.82  E-value=0.087  Score=44.15  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      --|+|+|.+|+|||||...+.+.
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            45789999999999999999764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=91.80  E-value=0.14  Score=42.52  Aligned_cols=24  Identities=17%  Similarity=0.119  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .--|+|+|.+|+|||||...+.+.
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            456789999999999999988764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=91.77  E-value=0.089  Score=44.88  Aligned_cols=24  Identities=4%  Similarity=0.090  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|.++|.+|+|||+|.+.+.+.
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            446789999999999999977763

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=91.77  E-value=0.091  Score=43.55  Aligned_cols=23  Identities=13%  Similarity=0.130  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .-|+|+|..|+|||||...+.++
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46789999999999999998754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=91.74  E-value=0.11  Score=42.51  Aligned_cols=23  Identities=13%  Similarity=0.287  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .-|+|+|.+|+|||||...+.+.
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            45789999999999999988764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=91.73  E-value=0.089  Score=43.96  Aligned_cols=23  Identities=13%  Similarity=0.159  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      --|+++|.+|+|||||...+.++
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46789999999999999888754

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=91.72  E-value=0.024  Score=61.46  Aligned_cols=47  Identities=11%  Similarity=0.130  Sum_probs=30.8

Q ss_pred             ccCCeEEEEEeCCCC--Cch-----hHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          289 LTNKKYFIVLDDVFD--NSE-----IWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       289 l~~kr~LlVlDdv~~--~~~-----~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +..++-|++||..-.  +..     .|.-+. .+.. ..|+.+|++|.+...+...
T Consensus       865 la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~-~L~~-~~g~~vl~~TH~~el~~~~  918 (1022)
T 2o8b_B          865 HATAHSLVLVDELGRGTATFDGTAIANAVVK-ELAE-TIKCRTLFSTHYHSLVEDY  918 (1022)
T ss_dssp             HCCTTCEEEEECTTTTSCHHHHHHHHHHHHH-HHHH-TSCCEEEEECCCHHHHHHT
T ss_pred             hCCCCcEEEEECCCCCCChHHHHHHHHHHHH-HHHh-cCCCEEEEEeCCHHHHHHh
Confidence            356788999999966  222     133232 2321 2378999999998887765

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=91.72  E-value=0.11  Score=43.45  Aligned_cols=24  Identities=21%  Similarity=0.196  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...|+|+|.+|+|||||...+.+.
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            457889999999999999998754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=91.69  E-value=0.089  Score=50.62  Aligned_cols=23  Identities=17%  Similarity=0.200  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|+|||||.+.+..
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhC
Confidence            35889999999999999999975

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=91.68  E-value=0.094  Score=43.81  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|.|+|.+|+|||||...+.+.
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            456889999999999999998764

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=91.67  E-value=0.098  Score=50.42  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|+|.|+.|+||||||..+..
T Consensus         3 ~~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHH
Confidence            5889999999999999998876

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=91.67  E-value=0.55  Score=49.66  Aligned_cols=58  Identities=17%  Similarity=0.152  Sum_probs=35.4

Q ss_pred             HHHHccC---CeEEEEEeCCCC--CchhHHHHHhhCCCC-CCCcEEEEecCChHHHhhchhcCCCceee
Q 016120          285 LRDYLTN---KKYFIVLDDVFD--NSEIWSDLEELLPDD-ENGSRVLITVTDPDLLASLEMENGEKIRR  347 (394)
Q Consensus       285 l~~~l~~---kr~LlVlDdv~~--~~~~~~~l~~~l~~~-~~gs~IivTTR~~~v~~~~~~~~~~~~~~  347 (394)
                      |...|..   .+-++|||.--.  +......+...+... ..|..||++|.+.++.. .    .++++.
T Consensus       741 LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~-~----aDrii~  804 (842)
T 2vf7_A          741 LATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVA-A----SDWVLD  804 (842)
T ss_dssp             HHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-T----CSEEEE
T ss_pred             HHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-h----CCEEEE
Confidence            3444544   368999999776  444444444333221 24667999999988774 3    366766

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=91.63  E-value=0.096  Score=43.65  Aligned_cols=24  Identities=13%  Similarity=0.134  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            345789999999999999988764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=91.63  E-value=0.088  Score=44.25  Aligned_cols=24  Identities=25%  Similarity=0.199  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            457789999999999999999864

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=91.62  E-value=0.076  Score=46.26  Aligned_cols=22  Identities=9%  Similarity=0.086  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|+|.|+.|+||||+++.+..
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998876

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=91.62  E-value=0.12  Score=43.86  Aligned_cols=25  Identities=12%  Similarity=-0.021  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ....|.|+|.+|+|||||...+.+.
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            4668899999999999999999875

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=91.60  E-value=0.13  Score=50.29  Aligned_cols=103  Identities=14%  Similarity=0.203  Sum_probs=54.4

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccc--------cccC-eeEEEEeCCCCC-HHHHHHHHHHHhCCC
Q 016120          198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVK--------FYFD-CLAWVRVSIAYD-FGKMLDDIIKSVMPP  267 (394)
Q Consensus       198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------~~F~-~~~wv~vs~~~~-~~~i~~~i~~~l~~~  267 (394)
                      .++.|..-..+ ..++|.|.+|+|||+|+..+.+.....        ++=+ .++++-+++... ..++..++... +.-
T Consensus       137 aID~l~pigrG-Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~-g~~  214 (464)
T 3gqb_B          137 TIDVMNTLVRG-QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERT-GAL  214 (464)
T ss_dssp             HHHTTSCCBTT-CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHT-SGG
T ss_pred             eeecccccccC-CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhc-ccc
Confidence            44555443222 245788999999999999998743321        1111 556776666543 44444444331 100


Q ss_pred             CCCc---cccCc-CH-----HHHHHHHHHHcc---CCeEEEEEeCCC
Q 016120          268 SRVS---VIIGE-DY-----QLKKSILRDYLT---NKKYFIVLDDVF  302 (394)
Q Consensus       268 ~~~~---~~~~~-~~-----~~~~~~l~~~l~---~kr~LlVlDdv~  302 (394)
                      ....   ...+. ..     ....-.+.+++.   ++..||++||+.
T Consensus       215 ~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT  261 (464)
T 3gqb_B          215 SRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT  261 (464)
T ss_dssp             GGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred             cceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence            0000   00111 11     222334555553   789999999974

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=91.59  E-value=0.42  Score=42.38  Aligned_cols=103  Identities=14%  Similarity=0.091  Sum_probs=54.5

Q ss_pred             EEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC---C--------CCCccccCc-CHH
Q 016120          212 VAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP---P--------SRVSVIIGE-DYQ  279 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~---~--------~~~~~~~~~-~~~  279 (394)
                      +.|+|..|.|||.+|..+...  .  . ..++++. ..    ..+..++.+.+..   .        .....++-- +.+
T Consensus       111 ~ll~~~tG~GKT~~a~~~~~~--~--~-~~~liv~-P~----~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~  180 (237)
T 2fz4_A          111 GCIVLPTGSGKTHVAMAAINE--L--S-TPTLIVV-PT----LALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD  180 (237)
T ss_dssp             EEEEESSSTTHHHHHHHHHHH--S--C-SCEEEEE-SS----HHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH--c--C-CCEEEEe-CC----HHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence            678999999999999877763  2  1 2234443 22    2333333333321   1        000001111 344


Q ss_pred             HHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEec
Q 016120          280 LKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITV  328 (394)
Q Consensus       280 ~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTT  328 (394)
                      .+..... .+.++--+||+|++.. ....+..+...++   ...++.+|.
T Consensus       181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA  226 (237)
T 2fz4_A          181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA  226 (237)
T ss_dssp             HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred             HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence            4444333 3344456999999988 4456777776664   233455553

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=91.59  E-value=0.12  Score=44.25  Aligned_cols=25  Identities=36%  Similarity=0.352  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ....|+|+|.+|+|||||...+.+.
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4567889999999999999998764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=91.57  E-value=0.095  Score=44.71  Aligned_cols=23  Identities=13%  Similarity=0.167  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..-|+|+|.+|+|||||...+..
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            34688999999999999988864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=91.55  E-value=0.097  Score=44.68  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...-|+|+|.+|+|||||...+...
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3457889999999999999988754

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=91.54  E-value=0.13  Score=45.14  Aligned_cols=25  Identities=8%  Similarity=0.074  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ....|+|+|.+|+|||||...+...
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567889999999999999999875

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.52  E-value=0.091  Score=44.49  Aligned_cols=24  Identities=25%  Similarity=0.296  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            457889999999999999988764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.52  E-value=0.21  Score=41.99  Aligned_cols=25  Identities=20%  Similarity=0.008  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ....|.|+|.+|+|||||...+.+.
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3567889999999999999999854

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=91.50  E-value=0.1  Score=43.50  Aligned_cols=24  Identities=17%  Similarity=0.200  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|.|+|.+|+|||||...+...
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            346789999999999999988764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=91.48  E-value=0.11  Score=49.06  Aligned_cols=24  Identities=17%  Similarity=0.043  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+|+|+|.+|+|||||...+..
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            467999999999999999998875

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=91.47  E-value=0.15  Score=47.13  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=26.9

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++++.+.+..     .+++|+|++|+|||||.+.+..
T Consensus       159 gv~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          159 GIEELKEYLKG-----KISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             THHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHST
T ss_pred             CHHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhcc
Confidence            46667766643     4789999999999999999986

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=91.47  E-value=0.13  Score=50.78  Aligned_cols=106  Identities=12%  Similarity=0.156  Sum_probs=55.9

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHH-HHHhcCccc----ccccC-eeEEEEeCCCCC-HHHHHHHHHHHhCCCCC
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFT-ADTYNNDHV----KFYFD-CLAWVRVSIAYD-FGKMLDDIIKSVMPPSR  269 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA-~~v~~~~~~----~~~F~-~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~  269 (394)
                      +.++.|..-..+ ..++|.|.+|+|||+|| ..+.|....    .++-+ .++++-+++... +.++..++...-.....
T Consensus       151 raID~l~PigrG-QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~t  229 (510)
T 2ck3_A          151 KAVDSLVPIGRG-QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT  229 (510)
T ss_dssp             HHHHHHSCCBTT-CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred             eeeccccccccC-CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccc
Confidence            356666553322 34579999999999995 566663211    12234 467777777654 44444554432111000


Q ss_pred             Cc--cccCc-CH-----HHHHHHHHHHc--cCCeEEEEEeCCCC
Q 016120          270 VS--VIIGE-DY-----QLKKSILRDYL--TNKKYFIVLDDVFD  303 (394)
Q Consensus       270 ~~--~~~~~-~~-----~~~~~~l~~~l--~~kr~LlVlDdv~~  303 (394)
                      .-  ...++ ..     ......+.+++  +|+..||++||+..
T Consensus       230 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr  273 (510)
T 2ck3_A          230 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK  273 (510)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred             eEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence            00  00111 11     11122344454  57999999999753

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.43  E-value=0.1  Score=43.35  Aligned_cols=24  Identities=21%  Similarity=0.227  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+++|.+|+|||||...+.+.
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            456789999999999999998764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=91.38  E-value=0.083  Score=48.92  Aligned_cols=21  Identities=14%  Similarity=0.387  Sum_probs=18.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -|+|+|.+|+|||||.+.++.
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            458999999999999999775

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=91.37  E-value=0.17  Score=44.85  Aligned_cols=23  Identities=13%  Similarity=-0.015  Sum_probs=17.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -..|.|.|+.|+||||+++.+..
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999999987

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=91.36  E-value=0.14  Score=42.95  Aligned_cols=26  Identities=15%  Similarity=0.063  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNND  233 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~  233 (394)
                      ....|+++|.+|+|||||...+.+..
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            35678899999999999999998653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=91.34  E-value=0.11  Score=44.49  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            456889999999999999998764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=91.30  E-value=0.1  Score=48.26  Aligned_cols=25  Identities=12%  Similarity=0.171  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +...|+|+|.+|+|||||...+...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3568999999999999999998764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=91.28  E-value=0.16  Score=42.81  Aligned_cols=25  Identities=16%  Similarity=0.211  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...-|.|+|..|+|||||...+.++
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3457889999999999999998864

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.27  E-value=0.099  Score=44.48  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456789999999999999998764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=91.27  E-value=0.099  Score=46.43  Aligned_cols=23  Identities=13%  Similarity=0.042  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -..++|.|++|+||||+|+.+..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHH
Confidence            34689999999999999999876

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=91.27  E-value=0.11  Score=44.17  Aligned_cols=24  Identities=17%  Similarity=0.257  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            456889999999999999998764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=91.23  E-value=0.11  Score=45.02  Aligned_cols=25  Identities=12%  Similarity=0.056  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...-|.|+|.+|+|||||...+...
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3457789999999999999999764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=91.23  E-value=0.17  Score=42.52  Aligned_cols=25  Identities=16%  Similarity=-0.060  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...-|+++|.+|+|||||...+..+
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            4556889999999999999999654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=91.21  E-value=0.11  Score=44.19  Aligned_cols=24  Identities=8%  Similarity=-0.047  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+|+|.+|+|||||...+...
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhC
Confidence            456889999999999999999754

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=91.18  E-value=0.12  Score=51.81  Aligned_cols=23  Identities=13%  Similarity=0.137  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|.++|++|+||||+|+.+..
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~   57 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTR   57 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            56889999999999999999976

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.16  E-value=0.11  Score=43.39  Aligned_cols=25  Identities=20%  Similarity=0.045  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ....|+|+|.+|+|||||...+...
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~   41 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIG   41 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3567789999999999999998753

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=91.16  E-value=0.11  Score=45.02  Aligned_cols=22  Identities=14%  Similarity=0.108  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|+|.|+.|+||||+|+.+..
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~   28 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAE   28 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHH
Confidence            5899999999999999999987

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=91.16  E-value=0.11  Score=44.21  Aligned_cols=24  Identities=13%  Similarity=0.116  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|.|+|.+|+|||||...+.+.
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456789999999999999988764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=91.12  E-value=0.1  Score=44.58  Aligned_cols=25  Identities=20%  Similarity=0.133  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...-|+|+|.+|+|||||...+.+.
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhC
Confidence            3557889999999999999998864

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.11  E-value=0.1  Score=44.90  Aligned_cols=24  Identities=17%  Similarity=0.300  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            457889999999999999988754

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=91.11  E-value=0.24  Score=44.15  Aligned_cols=52  Identities=12%  Similarity=0.049  Sum_probs=31.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHH
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDII  261 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~  261 (394)
                      ...|.|.|+.|+||||+++.+..... ..++..+....-.......+.+++++
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~t~~g~~ir~~l   78 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGGTLLAEKLRALV   78 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence            45889999999999999999987322 22455344443322222334444444

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=91.09  E-value=0.12  Score=43.70  Aligned_cols=24  Identities=17%  Similarity=0.236  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            457889999999999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=91.09  E-value=0.11  Score=44.05  Aligned_cols=24  Identities=13%  Similarity=0.100  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .--|+|+|.+|+|||||...+...
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            456789999999999999999875

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.09  E-value=0.11  Score=44.07  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .--|.|+|.+|+|||||...+.+.
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcC
Confidence            346789999999999999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=91.08  E-value=0.12  Score=43.91  Aligned_cols=24  Identities=8%  Similarity=0.109  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .--|.++|.+|+|||||...+.+.
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcC
Confidence            456789999999999999998865

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=91.06  E-value=0.12  Score=44.60  Aligned_cols=24  Identities=13%  Similarity=0.073  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...|.|+|.+|+|||||...+.+.
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456789999999999999998764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=91.06  E-value=0.099  Score=52.71  Aligned_cols=23  Identities=17%  Similarity=0.021  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.++.|+|+.|+|||||++.+..
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~  391 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAA  391 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHH
Confidence            46899999999999999999987

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=91.05  E-value=0.93  Score=50.44  Aligned_cols=127  Identities=13%  Similarity=0.150  Sum_probs=0.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEE------------------------------------eCCCCCHH
Q 016120          211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVR------------------------------------VSIAYDFG  254 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~------------------------------------vs~~~~~~  254 (394)
                      .++|+|+.|+|||||++.+..   .-......+.+.                                    ...+.+..
T Consensus       418 ~~~ivG~sGsGKSTl~~ll~g---~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~  494 (1284)
T 3g5u_A          418 TVALVGNSGCGKSTTVQLMQR---LYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMD  494 (1284)
T ss_dssp             EEEEECCSSSSHHHHHHHTTT---SSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC---CCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHH


Q ss_pred             HHHHHHHHH----------------hCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCC
Q 016120          255 KMLDDIIKS----------------VMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLP  316 (394)
Q Consensus       255 ~i~~~i~~~----------------l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~  316 (394)
                      ++...+-..                ++....   .++....+....-+..+++.+ +|+||+.-.  |...-..+...+.
T Consensus       495 ~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~---~LSgGq~QriaiARal~~~p~-iliLDEpts~LD~~~~~~i~~~l~  570 (1284)
T 3g5u_A          495 EIEKAVKEANAYDFIMKLPHQFDTLVGERGA---QLSGGQKQRIAIARALVRNPK-ILLLDEATSALDTESEAVVQAALD  570 (1284)
T ss_dssp             HHHHHHHHTTCHHHHHHSTTGGGCCCSSSSC---SSCHHHHHHHHHHHHHHHCCS-EEEEESTTCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHhccccccccccCCCC---ccCHHHHHHHHHHHHHhcCCC-EEEEECCCCCCCHHHHHHHHHHHH


Q ss_pred             CCCCCcEEEEecCChHHHhhchhcCCCceeeCCccCCC
Q 016120          317 DDENGSRVLITVTDPDLLASLEMENGEKIRRDSVLFGG  354 (394)
Q Consensus       317 ~~~~gs~IivTTR~~~v~~~~~~~~~~~~~~~~~~~l~  354 (394)
                      ....|..+|+.|.+.+....+     ++++-     |+
T Consensus       571 ~~~~~~t~i~itH~l~~i~~~-----d~i~v-----l~  598 (1284)
T 3g5u_A          571 KAREGRTTIVIAHRLSTVRNA-----DVIAG-----FD  598 (1284)
T ss_dssp             HHHTTSEEEEECSCHHHHTTC-----SEEEE-----CS
T ss_pred             HHcCCCEEEEEecCHHHHHcC-----CEEEE-----EE

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=91.01  E-value=0.11  Score=51.84  Aligned_cols=24  Identities=4%  Similarity=-0.028  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +..+|.+.|++|+||||+|+.+..
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~  417 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLS  417 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEecccCCCCHHHHHHHHHH
Confidence            456889999999999999999987

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=91.00  E-value=0.26  Score=43.12  Aligned_cols=52  Identities=12%  Similarity=0.072  Sum_probs=32.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIK  262 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~  262 (394)
                      ..|.+.|..|+||||+++.+...... ..+..+.+..-.......+.+++++.
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~   55 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL   55 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence            47889999999999999999873222 23423343332223234455556654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=91.00  E-value=0.12  Score=43.76  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .--|.|+|.+|+|||||...+.+.
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            346789999999999999998764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=91.00  E-value=0.14  Score=46.41  Aligned_cols=24  Identities=21%  Similarity=0.198  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...|+++|.+|+|||||...+...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999998764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=90.99  E-value=0.11  Score=49.18  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -.+++|+|..|+|||||.+.+.+.
T Consensus        71 Gq~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           71 GQRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            358899999999999999999873

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=90.98  E-value=0.36  Score=48.25  Aligned_cols=53  Identities=13%  Similarity=0.014  Sum_probs=37.1

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHH
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFG  254 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~  254 (394)
                      +.++.|..-. +=..++|.|..|+|||+|++.+.+.    .+-+.++++-+++.....
T Consensus       216 rvID~l~Pig-kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev  268 (588)
T 3mfy_A          216 RVIDTFFPQA-KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEM  268 (588)
T ss_dssp             HHHHHHSCEE-TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHH
T ss_pred             chhhccCCcc-cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHH
Confidence            4566665432 2246789999999999999998763    223577888888876643

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=90.96  E-value=0.11  Score=43.85  Aligned_cols=24  Identities=13%  Similarity=0.018  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            346789999999999999999864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=90.96  E-value=0.12  Score=44.24  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            456789999999999999998764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=90.90  E-value=0.1  Score=49.69  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..++|+|+.|+|||||++.+..
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~  197 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQ  197 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999999986

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=90.87  E-value=0.15  Score=45.16  Aligned_cols=25  Identities=8%  Similarity=0.153  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ....|+|+|.+|+|||||...+...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCC
Confidence            4567899999999999999999874

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=90.86  E-value=0.12  Score=44.77  Aligned_cols=25  Identities=16%  Similarity=0.139  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...-|+|+|.+|+|||||...+.+.
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcC
Confidence            3457889999999999999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=90.86  E-value=0.13  Score=43.45  Aligned_cols=24  Identities=17%  Similarity=0.238  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...|.|+|.+|+|||||...+.+.
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            346889999999999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.83  E-value=0.16  Score=42.96  Aligned_cols=25  Identities=12%  Similarity=0.153  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...-|+|+|.+|+|||||...+.+.
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcC
Confidence            3456789999999999999998764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=90.81  E-value=0.12  Score=43.91  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|.|+|..|+|||||...+.++
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            346789999999999999999864

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=90.80  E-value=0.13  Score=43.45  Aligned_cols=24  Identities=17%  Similarity=0.217  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|.|+|.+|+|||||...+.+.
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            457889999999999999998754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=90.79  E-value=0.13  Score=43.97  Aligned_cols=25  Identities=12%  Similarity=0.165  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...-|.|+|.+|+|||||...+.+.
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3567889999999999999998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=90.79  E-value=0.91  Score=50.63  Aligned_cols=23  Identities=26%  Similarity=0.254  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -..++|||+.|+|||||++.+..
T Consensus       444 G~~vaivG~sGsGKSTll~ll~~  466 (1321)
T 4f4c_A          444 GQTVALVGSSGCGKSTIISLLLR  466 (1321)
T ss_dssp             TCEEEEEECSSSCHHHHHHHHTT
T ss_pred             CcEEEEEecCCCcHHHHHHHhcc
Confidence            45889999999999999999975

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=90.79  E-value=0.24  Score=43.72  Aligned_cols=20  Identities=25%  Similarity=0.355  Sum_probs=17.7

Q ss_pred             EEEEcCCCccHHHHHHHHhc
Q 016120          212 VAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~  231 (394)
                      |+|.|-||+||||+|..+..
T Consensus         3 I~vs~kGGvGKTt~a~~LA~   22 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIK   22 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHH
Confidence            66789999999999988876

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=90.78  E-value=0.19  Score=43.69  Aligned_cols=50  Identities=18%  Similarity=0.276  Sum_probs=30.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIK  262 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~  262 (394)
                      ..|+|-|.-|+||||+++.+..  .....++++. ..-.........+.+++.
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~v~~-~~eP~~t~~g~~ir~~l~   52 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYH--RLVKDYDVIM-TREPGGVPTGEEIRKIVL   52 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH--HHTTTSCEEE-EESSTTCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHH--HHHCCCCEEE-eeCCCCChHHHHHHHHHh
Confidence            4688999999999999999987  3334444432 222222233444445443

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=90.78  E-value=0.13  Score=44.97  Aligned_cols=23  Identities=13%  Similarity=0.167  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..-|+|+|.+|+|||||...+..
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            45688999999999999998874

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=90.77  E-value=0.15  Score=45.00  Aligned_cols=24  Identities=13%  Similarity=0.112  Sum_probs=19.7

Q ss_pred             CceEEEEEcC-CCccHHHHHHHHhc
Q 016120          208 GLAVVAILDS-SGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~-gGiGKTtLA~~v~~  231 (394)
                      ..++|+|++. ||+||||+|..+..
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~   27 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAF   27 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHH
Confidence            3578888864 99999999988876

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=90.73  E-value=0.14  Score=47.52  Aligned_cols=26  Identities=15%  Similarity=0.238  Sum_probs=22.9

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +....|+|+|.+|+|||||...+...
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            45789999999999999999998764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=90.68  E-value=0.13  Score=44.06  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|.|+|.+|+|||||...+.+.
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            457889999999999999998764

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=90.68  E-value=0.13  Score=46.24  Aligned_cols=40  Identities=10%  Similarity=0.057  Sum_probs=26.6

Q ss_pred             CceEEEEEc-CCCccHHHHHHHHhcCcccccccCeeEEEEeCCC
Q 016120          208 GLAVVAILD-SSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA  250 (394)
Q Consensus       208 ~~~vi~I~G-~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~  250 (394)
                      ..++|+|+| -||+||||+|..+..-.. + . ..+.-|.....
T Consensus        26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~-g-~~VlliD~D~~   66 (267)
T 3k9g_A           26 KPKIITIASIKGGVGKSTSAIILATLLS-K-N-NKVLLIDMDTQ   66 (267)
T ss_dssp             CCEEEEECCSSSSSCHHHHHHHHHHHHT-T-T-SCEEEEEECTT
T ss_pred             CCeEEEEEeCCCCchHHHHHHHHHHHHH-C-C-CCEEEEECCCC
Confidence            467888875 599999999988876333 2 2 33445555443

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=90.67  E-value=0.13  Score=45.17  Aligned_cols=22  Identities=14%  Similarity=0.170  Sum_probs=18.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.|+|.+|+|||+|...+.++
T Consensus        15 KivlvGd~~VGKTsLi~r~~~~   36 (216)
T 4dkx_A           15 KLVFLGEQSVGKTSLITRFMYD   36 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCcCHHHHHHHHHhC
Confidence            4678999999999999888754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=90.58  E-value=0.11  Score=43.79  Aligned_cols=25  Identities=16%  Similarity=0.025  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNND  233 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~  233 (394)
                      ...|+|+|.+|+|||||...+.+..
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            4567899999999999999998753

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=90.55  E-value=0.1  Score=51.35  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||++.++.
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~G  160 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCS  160 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5789999999999999999876

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=90.51  E-value=0.12  Score=43.24  Aligned_cols=24  Identities=21%  Similarity=0.022  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...|.|+|.+|+|||||...+.+.
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            456789999999999999999764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=90.50  E-value=0.14  Score=43.43  Aligned_cols=24  Identities=13%  Similarity=0.206  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|.++|.+|+|||||...+.+.
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            347889999999999999999864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=90.50  E-value=0.28  Score=42.53  Aligned_cols=39  Identities=8%  Similarity=-0.021  Sum_probs=25.3

Q ss_pred             EEEEE-cCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCC
Q 016120          211 VVAIL-DSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYD  252 (394)
Q Consensus       211 vi~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~  252 (394)
                      +|+|+ +-||+||||+|..+..-  ....- .+.-|......+
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~--la~~g-~VlliD~D~q~~   41 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAY--LALQG-ETLLIDGDPNRS   41 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH--HHTTS-CEEEEEECTTCH
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHH--HHhcC-CEEEEECCCCCC
Confidence            56675 56999999999888763  22222 455666555443

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=90.50  E-value=0.14  Score=50.45  Aligned_cols=23  Identities=9%  Similarity=0.114  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+|.++|++|+||||+++.+..
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~   61 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTR   61 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999999987

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=90.46  E-value=0.16  Score=43.58  Aligned_cols=24  Identities=13%  Similarity=0.135  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .--|+++|.+|+|||||...+.++
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            456789999999999999888754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.46  E-value=0.14  Score=44.05  Aligned_cols=24  Identities=8%  Similarity=0.070  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+|+|.+|+|||||...+.+.
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcC
Confidence            346889999999999999988764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=90.44  E-value=0.12  Score=48.63  Aligned_cols=110  Identities=13%  Similarity=0.083  Sum_probs=58.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHc
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL  289 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l  289 (394)
                      ..++|+|+.|+|||||++.+..-  +. .-...+.+.-.......           .......-+..........+...|
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~--~~-~~~g~i~i~~~~e~~~~-----------~~~~~i~~~~ggg~~~r~~la~aL  237 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEF--IP-KEERIISIEDTEEIVFK-----------HHKNYTQLFFGGNITSADCLKSCL  237 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGG--SC-TTSCEEEEESSCCCCCS-----------SCSSEEEEECBTTBCHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC--Cc-CCCcEEEECCeeccccc-----------cchhEEEEEeCCChhHHHHHHHHh
Confidence            47899999999999999999872  21 12344444322211100           000000000000112334555667


Q ss_pred             cCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          290 TNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       290 ~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      ..++=+|++|.+.+ .+.++.+... ..+  +.-+|+||...+....+
T Consensus       238 ~~~p~ilildE~~~-~e~~~~l~~~-~~g--~~tvi~t~H~~~~~~~~  281 (330)
T 2pt7_A          238 RMRPDRIILGELRS-SEAYDFYNVL-CSG--HKGTLTTLHAGSSEEAF  281 (330)
T ss_dssp             TSCCSEEEECCCCS-THHHHHHHHH-HTT--CCCEEEEEECSSHHHHH
T ss_pred             hhCCCEEEEcCCCh-HHHHHHHHHH-hcC--CCEEEEEEcccHHHHHh
Confidence            77788899999988 6666655433 222  22266666665544433

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=90.43  E-value=0.19  Score=43.55  Aligned_cols=24  Identities=13%  Similarity=-0.031  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+|+|+|++|+||+|+|..+.+
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~   33 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQS   33 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHH
Confidence            457999999999999999988765

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=90.42  E-value=0.23  Score=42.48  Aligned_cols=39  Identities=18%  Similarity=0.075  Sum_probs=25.1

Q ss_pred             eEEEEE-cCCCccHHHHHHHHhcCcccccccCeeEEEEeCCC
Q 016120          210 AVVAIL-DSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA  250 (394)
Q Consensus       210 ~vi~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~  250 (394)
                      ++|+|+ +-||+||||+|..+...  ....=..+.-+.....
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~--la~~g~~vlliD~D~~   41 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATA--LSRSGYNIAVVDTDPQ   41 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHH--HHHTTCCEEEEECCTT
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHH--HHHCCCeEEEEECCCC
Confidence            578888 56999999999888762  2222123455555433

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=90.39  E-value=0.14  Score=44.09  Aligned_cols=24  Identities=13%  Similarity=0.077  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|.|+|.+|+|||||...+.+.
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            456789999999999999988764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=90.35  E-value=0.14  Score=43.80  Aligned_cols=25  Identities=12%  Similarity=0.076  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...-|.|+|.+|+|||||...+.+.
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhhC
Confidence            3457889999999999999998764

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=90.35  E-value=0.12  Score=50.84  Aligned_cols=103  Identities=14%  Similarity=0.126  Sum_probs=54.9

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc--cCeeEEEEeCCCCC-HHHHHHHHHHHhCCCCCCc--c
Q 016120          198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY--FDCLAWVRVSIAYD-FGKMLDDIIKSVMPPSRVS--V  272 (394)
Q Consensus       198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~~--~  272 (394)
                      .++.|..-..+ ..++|.|.+|+|||+|+..+.++....+.  =+.++++-+++... ..++..++...-......-  .
T Consensus       142 ~ID~l~pigrG-Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~  220 (469)
T 2c61_A          142 TIDGTNTLVRG-QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLN  220 (469)
T ss_dssp             HHHTTSCCBTT-CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEE
T ss_pred             eeeeeeccccC-CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEE
Confidence            45555443222 34567899999999999999874332111  13556666666543 4555555554311110000  0


Q ss_pred             ccCc------CHHHHHHHHHHHc---cCCeEEEEEeCC
Q 016120          273 IIGE------DYQLKKSILRDYL---TNKKYFIVLDDV  301 (394)
Q Consensus       273 ~~~~------~~~~~~~~l~~~l---~~kr~LlVlDdv  301 (394)
                      ..++      -.....-.+.+++   +++..||++||+
T Consensus       221 tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl  258 (469)
T 2c61_A          221 LADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI  258 (469)
T ss_dssp             ETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence            0111      1122233344554   369999999996

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=90.32  E-value=0.079  Score=54.02  Aligned_cols=21  Identities=14%  Similarity=0.135  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -+.++|++|+|||+||+.+.+
T Consensus       329 ~vLL~GppGtGKT~LAr~la~  349 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISR  349 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSST
T ss_pred             ceEEECCCchHHHHHHHHHHH
Confidence            477999999999999999987

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=90.29  E-value=0.15  Score=48.46  Aligned_cols=23  Identities=13%  Similarity=0.143  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .+++|+|++|+|||||.+.+...
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CEEEEECCCCccHHHHHHHHhcc
Confidence            47899999999999999999873

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=90.28  E-value=0.15  Score=43.63  Aligned_cols=24  Identities=13%  Similarity=0.083  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+|+|.+|+|||||...+.++
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346789999999999999998764

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.26  E-value=0.15  Score=43.78  Aligned_cols=24  Identities=13%  Similarity=0.314  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..-|+|+|.+|+|||||...+...
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457889999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	394
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	2e-10

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.1 bits (142), Expect = 2e-10
 Identities = 37/223 (16%), Positives = 67/223 (30%), Gaps = 26/223 (11%)

Query: 176 IHLLSEGQP-RLDINEFERGREELFDLLIEGPSG-LAVVAILDSSGFDKTVFTADTYNND 233
             LL    P ++     E   + +   L E        + +   +G  K+V  +   +  
Sbjct: 9   RKLLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKS 68

Query: 234 H--VKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV------SVIIGEDYQLKKSIL 285
              +   +D + W++ S               +M  S        SV       LK+ I 
Sbjct: 69  DQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMIC 128

Query: 286 RDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASLEMENGEKI 345
              +       V DDV          E +    E   R L+T  D ++  +   +  E I
Sbjct: 129 NALIDRPNTLFVFDDVV-------QEETIRWAQELRLRCLVTTRDVEISNAA-SQTCEFI 180

Query: 346 RRDSVLFGGPLIRLKHEAWQFFILHYGSMPLENYLQGEAIPTV 388
              S+           E + F   +   MP+    +     T+
Sbjct: 181 EVTSL--------EIDECYDFLEAYGMPMPVGEKEEDVLNKTI 215

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	394
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.96
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.88
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.72
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.6
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.59
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.53
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.52
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.5
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.43
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.41
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.4
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.37
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.29
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.28
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.27
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.21
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.14
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.09
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.05
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.01
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.96
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.89
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.8
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.47
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.47
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.34
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.21
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.21
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.13
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.1
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.06
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.04
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.03
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.97
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.97
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.93
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.93
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.9
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.9
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	96.9
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.88
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.87
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.84
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.82
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.8
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.74
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.74
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.68
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.65
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.65
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.63
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.6
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.56
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.55
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.53
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.52
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.52
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.51
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.5
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.49
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.46
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.46
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.42
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.42
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.39
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.37
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.32
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.32
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.29
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.21
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.21
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.2
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.15
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.14
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.11
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.1
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.08
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.03
d1okkd2	207	GTPase domain of the signal recognition particle r	95.98
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.95
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.91
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.9
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.9
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.87
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.86
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.71
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.7
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.61
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.6
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.56
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.55
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.47
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.44
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.41
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.4
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.36
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.35
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.31
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.28
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.24
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.2
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.2
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.17
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.17
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.15
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	95.14
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.09
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.04
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.0
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.99
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.99
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.98
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.97
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.97
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	94.88
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.86
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	94.71
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.7
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.62
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.36
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.31
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.28
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	94.19
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.19
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	94.13
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.12
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	94.08
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	93.98
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.86
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.84
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.77
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.77
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.7
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.58
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	93.57
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.54
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.53
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.5
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.49
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.39
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.35
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.3
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	93.29
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.26
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	93.26
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	93.18
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.17
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.16
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	93.15
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	93.15
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.14
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	93.13
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	93.11
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.08
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.05
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.04
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	93.03
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.01
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.0
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	92.99
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.92
d1nrjb_	209	Signal recognition particle receptor beta-subunit	92.83
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	92.78
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	92.76
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.76
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.74
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	92.74
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	92.74
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.73
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.69
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	92.68
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.63
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	92.63
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.6
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	92.55
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	92.46
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	92.38
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	92.38
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.33
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.33
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	92.32
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.29
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	92.26
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.22
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	92.19
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	92.16
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.11
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.08
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	92.06
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	92.06
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.01
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	92.01
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.99
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	91.95
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	91.89
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	91.85
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	91.81
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	91.75
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	91.73
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	91.63
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	91.63
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	91.61
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	91.59
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.41
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	91.34
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	91.29
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	91.22
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	91.2
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	91.17
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	91.12
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	90.94
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	90.91
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	90.21
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	90.18
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	89.96
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	89.53
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	89.33
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.3
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	89.03
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	88.89
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	88.47
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	88.47
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	87.56
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	87.56
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	87.35
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	87.27
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	87.22
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	87.11
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	87.02
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	86.9
d1tuea_	205	Replication protein E1 helicase domain {Human papi	85.36
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	85.13
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	84.15
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	83.98
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	83.66
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	83.1
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	82.46
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	81.67
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	81.63
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	81.13
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	81.1
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	80.68
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	80.55

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=3.1e-29  Score=232.55  Aligned_cols=171  Identities=15%  Similarity=0.098  Sum_probs=135.4

Q ss_pred             ccceecccHHHHHHHHhc-CCCCceEEEEEcCCCccHHHHHHHHhcCcc--cccccCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIE-GPSGLAVVAILDSSGFDKTVFTADTYNNDH--VKFYFDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~--~~~~F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      +++||+.++++|+++|.. .+....+|+|+||||+||||||+++|++..  ...+|++++||++++.++...+...+...
T Consensus        21 ~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~~  100 (277)
T d2a5yb3          21 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDIL  100 (277)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHH
T ss_pred             ceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHHHH
Confidence            689999999999999975 345688999999999999999999998643  67789999999999999877666555443


Q ss_pred             ---hCCCCCCc--cccCc-CHHHHHHHHHHHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          264 ---VMPPSRVS--VIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       264 ---l~~~~~~~--~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                         ++......  ..... +.......+.+.+.++|+|+||||||+ ...|+.+..      .|||||||||++.++..+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~-~~~~~~~~~------~~srilvTTR~~~v~~~~  173 (277)
T d2a5yb3         101 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ-EETIRWAQE------LRLRCLVTTRDVEISNAA  173 (277)
T ss_dssp             HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC-HHHHHHHHH------TTCEEEEEESBGGGGGGC
T ss_pred             HHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhH-Hhhhhhhcc------cCceEEEEeehHHHHHhc
Confidence               33322111  11222 445556678888999999999999999 888876643      489999999999999987


Q ss_pred             hhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhCC
Q 016120          338 EMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGS  373 (394)
Q Consensus       338 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~  373 (394)
                        .....+|+     |++|  +.+|||+||+++++.
T Consensus       174 --~~~~~~~~-----l~~L--~~~ea~~Lf~~~~~~  200 (277)
T d2a5yb3         174 --SQTCEFIE-----VTSL--EIDECYDFLEAYGMP  200 (277)
T ss_dssp             --CSCEEEEE-----CCCC--CHHHHHHHHHHTSCC
T ss_pred             --CCCCceEE-----CCCC--CHHHHHHHHHHHhCC
Confidence              34457899     9999  999999999988543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.88  E-value=5.3e-08  Score=86.86  Aligned_cols=171  Identities=19%  Similarity=0.209  Sum_probs=111.9

Q ss_pred             ccceecccHHHHHHHHhc----CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccC-eeEEEEeCCCCCHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIE----GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFD-CLAWVRVSIAYDFGKMLDDII  261 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~i~~~i~  261 (394)
                      .++||+.++++|.++|..    .+...+.+.|+|++|+|||++|+.+++  ....... ..+|+...........+..+.
T Consensus        17 ~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (276)
T d1fnna2          17 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEIA   94 (276)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHH--HHhcccCCcEEEecchhhhhhhhhhhhhH
Confidence            689999999999998864    234567888999999999999999998  4444333 346777778888888999999


Q ss_pred             HHhCCCCCCccccCc-CHHHHHHHHHHHcc--CCeEEEEEeCCCC-CchhHHHHHhhCCC----CCCCcEEEEecCChHH
Q 016120          262 KSVMPPSRVSVIIGE-DYQLKKSILRDYLT--NKKYFIVLDDVFD-NSEIWSDLEELLPD----DENGSRVLITVTDPDL  333 (394)
Q Consensus       262 ~~l~~~~~~~~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~-~~~~~~~l~~~l~~----~~~gs~IivTTR~~~v  333 (394)
                      ...+....    ... ........+.+.+.  ......++|++++ .......+...+..    ......+|.++.....
T Consensus        95 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  170 (276)
T d1fnna2          95 RSLNIPFP----RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV  170 (276)
T ss_dssp             HHTTCCCC----SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred             Hhhhhhhh----hhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCchhh
Confidence            88877654    122 55666666666553  4567788888877 22222222222211    1222345555555433


Q ss_pred             Hhhchh----cCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          334 LASLEM----ENGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       334 ~~~~~~----~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                      ......    ......+.     +.+.  +.++.++.+.++
T Consensus       171 ~~~~~~~~~~r~~~~~i~-----~~~~--~~~e~~~il~~r  204 (276)
T d1fnna2         171 LNNLDPSTRGIMGKYVIR-----FSPY--TKDQIFDILLDR  204 (276)
T ss_dssp             HHTSCHHHHHHHTTCEEE-----CCCC--BHHHHHHHHHHH
T ss_pred             hhhcchhhhhhhcchhcc-----ccch--hHHHHHHHHHHH
Confidence            222100    01234577     9999  999999999875

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.72  E-value=9.6e-09  Score=92.04  Aligned_cols=165  Identities=14%  Similarity=0.165  Sum_probs=89.9

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeC-----CCCCHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVS-----IAYDFGKMLDDII  261 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs-----~~~~~~~i~~~i~  261 (394)
                      +|+||++++++|.+.      ..+.+.|+|++|+|||+|++++.+  +....   ..|+.+.     .......+...+.
T Consensus        13 ~f~GR~~el~~l~~~------~~~~i~i~G~~G~GKTsLl~~~~~--~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~   81 (283)
T d2fnaa2          13 DFFDREKEIEKLKGL------RAPITLVLGLRRTGKSSIIKIGIN--ELNLP---YIYLDLRKFEERNYISYKDFLLELQ   81 (283)
T ss_dssp             GSCCCHHHHHHHHHT------CSSEEEEEESTTSSHHHHHHHHHH--HHTCC---EEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred             hCCChHHHHHHHHhc------cCCEEEEEcCCCCcHHHHHHHHHH--HCCCC---eEEEEeccccccccccHHHHHHHHH
Confidence            899999999998763      245788999999999999999987  33332   2344332     1222333333333


Q ss_pred             HHhC--------------CCCCCc----------cccCc-CHHHHHHHHHHHccCCeEEEEEeCCCC-----CchhHHHH
Q 016120          262 KSVM--------------PPSRVS----------VIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFD-----NSEIWSDL  311 (394)
Q Consensus       262 ~~l~--------------~~~~~~----------~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~-----~~~~~~~l  311 (394)
                      ....              ......          ..... +...+...+. ...++++++|+|++..     ....+..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~i~id~~~~~~~~~~~~~~~~l  160 (283)
T d2fnaa2          82 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFE-QASKDNVIIVLDEAQELVKLRGVNLLPAL  160 (283)
T ss_dssp             HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHH-HTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred             HHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHH-hhcccccccccchhhhhcccchHHHHHHH
Confidence            3221              100000          00011 3333333332 2356889999999754     12223333


Q ss_pred             HhhCCCCCCCcEEEEecCChHHHh-hchhc--------CCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          312 EELLPDDENGSRVLITVTDPDLLA-SLEME--------NGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       312 ~~~l~~~~~gs~IivTTR~~~v~~-~~~~~--------~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      ..... .......+++.+...... .....        .....+.     |+|+  +.+++.+++.+.+
T Consensus       161 ~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----L~~l--~~~e~~~~l~~~~  221 (283)
T d2fnaa2         161 AYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVE-----LKPF--SREEAIEFLRRGF  221 (283)
T ss_dssp             HHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEE-----ECCC--CHHHHHHHHHHHH
T ss_pred             HHHHH-hhhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEe-----eCCC--CHHHHHHHHHhhh
Confidence            33222 223444555555443322 21100        1134567     9999  9999999998765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=3.7e-08  Score=86.10  Aligned_cols=157  Identities=13%  Similarity=0.075  Sum_probs=94.6

Q ss_pred             CCcccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccccc-C-eeEEEEeCCCCCHHHHHHHHH
Q 016120          184 PRLDINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYF-D-CLAWVRVSIAYDFGKMLDDII  261 (394)
Q Consensus       184 ~~~~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~-~~~wv~vs~~~~~~~i~~~i~  261 (394)
                      .+.+++|.+..++++.+++....  .+.+.++|++|+||||+|+.+.+  +....+ . ...-++.+.......+...+.
T Consensus        13 ~~~d~ig~~~~~~~L~~~~~~~~--~~~~ll~Gp~G~GKTt~a~~la~--~l~~~~~~~~~~~~n~~~~~~~~~i~~~~~   88 (224)
T d1sxjb2          13 VLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGIDVVRNQIK   88 (224)
T ss_dssp             SGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSHHHHHTHHH
T ss_pred             CHHHhcCCHHHHHHHHHHHHcCC--CCeEEEECCCCCCchhhHHHHHH--HHhccccccccccccccccCCceehhhHHH
Confidence            33389999999999999998764  44467899999999999998887  332221 1 123334444333333222222


Q ss_pred             HHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchh
Q 016120          262 KSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEM  339 (394)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~  339 (394)
                      ........                  ...++.-++|+|++.. +......+...+......+++++||.+. .+....  
T Consensus        89 ~~~~~~~~------------------~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l--  148 (224)
T d1sxjb2          89 HFAQKKLH------------------LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPL--  148 (224)
T ss_dssp             HHHHBCCC------------------CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHH--
T ss_pred             HHHHhhcc------------------CCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHH--
Confidence            11111100                  0123556888999987 4444444444444444556666666553 443333  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .+....++     ++++  +.++-...+.+.+
T Consensus       149 ~sr~~~i~-----~~~~--~~~~i~~~l~~i~  173 (224)
T d1sxjb2         149 QSQCAILR-----YSKL--SDEDVLKRLLQII  173 (224)
T ss_dssp             HTTSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred             HHHHHHhh-----hccc--chhhhHHHHHHHH
Confidence            24567788     9999  9999888887764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=5.7e-08  Score=84.93  Aligned_cols=156  Identities=13%  Similarity=0.054  Sum_probs=93.6

Q ss_pred             cccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhC
Q 016120          186 LDINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVM  265 (394)
Q Consensus       186 ~~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~  265 (394)
                      .+++|.++.++.+.+++..+.  .+.+.++|++|+||||+|+.+++............=.+.+................ 
T Consensus        14 ~divg~~~~~~~L~~~i~~~~--~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-   90 (227)
T d1sxjc2          14 DEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-   90 (227)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHH-
T ss_pred             HHccCcHHHHHHHHHHHHcCC--CCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCeeeeecchhhcc-
Confidence            389999999999999997754  33466999999999999999987311111111122222222222211111111000 


Q ss_pred             CCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhcCCC
Q 016120          266 PPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEMENGE  343 (394)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~  343 (394)
                                        .......+++-.+|+|++.. +...-..+...+......++++++|.+. .+...+  .+..
T Consensus        91 ------------------~~~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i--~sr~  150 (227)
T d1sxjc2          91 ------------------STRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPAL--LSQC  150 (227)
T ss_dssp             ------------------HBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH--HTTS
T ss_pred             ------------------ccccccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHH--HHHH
Confidence                              00001123455888999987 4445555666665556677887777764 333333  2456


Q ss_pred             ceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          344 KIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       344 ~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      ..++     +.++  +.++-...+.+.+
T Consensus       151 ~~i~-----~~~~--~~~~i~~~l~~I~  171 (227)
T d1sxjc2         151 TRFR-----FQPL--PQEAIERRIANVL  171 (227)
T ss_dssp             EEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred             hhhc-----cccc--ccccccccccccc
Confidence            7788     9999  9999888887764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=3.1e-08  Score=87.05  Aligned_cols=164  Identities=12%  Similarity=0.017  Sum_probs=98.1

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccc---cCeeEEEEeCCCCCHHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY---FDCLAWVRVSIAYDFGKMLDDIIKS  263 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F~~~~wv~vs~~~~~~~i~~~i~~~  263 (394)
                      +++|.+..++.+..++....  .+.+.++|++|+||||+|+.+++.  +...   ......++.+.......+...+-..
T Consensus        13 diig~~~~~~~l~~~i~~~~--~~~lll~Gp~G~GKTtl~~~i~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (237)
T d1sxjd2          13 EVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKE--LYGPDLMKSRILELNASDERGISIVREKVKNF   88 (237)
T ss_dssp             TCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHH--HHHHHHHTTSEEEECSSSCCCHHHHTTHHHHH
T ss_pred             HccCcHHHHHHHHHHHHcCC--CCeEEEECCCCCChHHHHHHHHHH--HcCCcccccchhheeccccccchHHHHHHHHH
Confidence            89999999999999987653  444779999999999999999873  2211   2233445555554444333322222


Q ss_pred             hCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhcC
Q 016120          264 VMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEMEN  341 (394)
Q Consensus       264 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~  341 (394)
                      ......     ....    ..+.....++.-++|+|++.. ....+..+...+......+++++|+.+. .+....  .+
T Consensus        89 ~~~~~~-----~~~~----~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l--~s  157 (237)
T d1sxjd2          89 ARLTVS-----KPSK----HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL--AS  157 (237)
T ss_dssp             HHSCCC-----CCCT----THHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH--HH
T ss_pred             hhhhhh-----hhhH----HHHhhccccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccc--cc
Confidence            111110     0011    112223334445789999987 4455555554444445556777766553 222222  12


Q ss_pred             CCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          342 GEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       342 ~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ....++     ++++  +.++...++.+.+.
T Consensus       158 r~~~i~-----f~~~--~~~~~~~~L~~i~~  181 (237)
T d1sxjd2         158 QCSKFR-----FKAL--DASNAIDRLRFISE  181 (237)
T ss_dssp             HSEEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred             hhhhhc-----cccc--cccccchhhhhhhh
Confidence            346788     9999  99999999987743

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=6.2e-07  Score=79.02  Aligned_cols=168  Identities=12%  Similarity=0.038  Sum_probs=93.8

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      +++|.+..++.+..++..+. -...+.++|+.|+||||+|+.+.+.  ......    .. ............+...-..
T Consensus        13 dlig~~~~~~~L~~~i~~~~-~~~~~Ll~Gp~G~GKtt~a~~~~~~--l~~~~~----~~-~~~~~~~~~~~~i~~~~~~   84 (239)
T d1njfa_          13 DVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG--LNCETG----IT-ATPCGVCDNCREIEQGRFV   84 (239)
T ss_dssp             GSCSCHHHHHHHHHHHHTTC-CCSEEEEECSTTSSHHHHHHHHHHH--HHCTTC----SC-SSCCSCSHHHHHHHHTCCT
T ss_pred             HccChHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHH--hcCccc----cc-cCccccchHHHHHHcCCCC
Confidence            89999999999999997753 2345679999999999999988652  111100    00 0000000111111111000


Q ss_pred             CCCCccccCc-CHHHHHHHHHHHc----cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchh
Q 016120          267 PSRVSVIIGE-DYQLKKSILRDYL----TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEM  339 (394)
Q Consensus       267 ~~~~~~~~~~-~~~~~~~~l~~~l----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~  339 (394)
                      ........+. ..+.....+...-    .++.-++|||++.. +...-..|...+-....++++|++|.+. .+....  
T Consensus        85 ~~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i--  162 (239)
T d1njfa_          85 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI--  162 (239)
T ss_dssp             TEEEEETTCSSSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH--
T ss_pred             eEEEecchhcCCHHHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChhH--
Confidence            0000000011 2222222222211    24556899999988 5555566666665555567777777654 333333  


Q ss_pred             cCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          340 ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       340 ~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .+....++     +.++  +.++-...+.+.+
T Consensus       163 ~SRc~~i~-----~~~~--~~~~i~~~l~~i~  187 (239)
T d1njfa_         163 LSRCLQFH-----LKAL--DVEQIRHQLEHIL  187 (239)
T ss_dssp             HTTSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred             hhhhcccc-----cccC--cHHHhhhHHHHHH
Confidence            24567788     9999  9988888777664

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=2.8e-07  Score=81.44  Aligned_cols=165  Identities=11%  Similarity=0.100  Sum_probs=85.9

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCc----ccccccCeeEEEEeCCC------------
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNND----HVKFYFDCLAWVRVSIA------------  250 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~----~~~~~F~~~~wv~vs~~------------  250 (394)
                      +++|.++..+.|.+++.... ...-+.|+|++|+||||+|+.+++..    .....++...|...+..            
T Consensus        12 diig~~~~~~~L~~~~~~~~-~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (252)
T d1sxje2          12 ALSHNEELTNFLKSLSDQPR-DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH   90 (252)
T ss_dssp             GCCSCHHHHHHHHTTTTCTT-CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred             HccCcHHHHHHHHHHHHcCC-CCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccccccccchhhhhhccCCcc
Confidence            89999888888877765443 33446699999999999999987631    11112222222211110            


Q ss_pred             ---------CCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCC
Q 016120          251 ---------YDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDEN  320 (394)
Q Consensus       251 ---------~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~  320 (394)
                               ...................    ..      ...-.....++.-++|||++.. ....+..+...+.....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~~~  160 (252)
T d1sxje2          91 LEITPSDMGNNDRIVIQELLKEVAQMEQ----VD------FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK  160 (252)
T ss_dssp             EEECCC----CCHHHHHHHHHHHTTTTC----------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred             ceeeecccccCCcceeeehhhhhhhhhh----hh------hhhcccccCCCceEEEeccccccccccchhhhcccccccc
Confidence                     0111111222222111110    00      0000011123445889999988 55566666655544455


Q ss_pred             CcEEEEecCChH-HHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          321 GSRVLITVTDPD-LLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       321 gs~IivTTR~~~-v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      .+++|+||.+.+ +....  .+....++     +.++  +.++..+.+.+.+
T Consensus       161 ~~~~Il~tn~~~~i~~~l--~sR~~~i~-----~~~~--~~~~~~~~l~~i~  203 (252)
T d1sxje2         161 NIRLIMVCDSMSPIIAPI--KSQCLLIR-----CPAP--SDSEISTILSDVV  203 (252)
T ss_dssp             TEEEEEEESCSCSSCHHH--HTTSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred             cccceeeeccccchhhhh--hcchheee-----eccc--chhhHHHHHHHHH
Confidence            677777776542 22222  12335788     9999  9999999887654

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=1.4e-06  Score=77.81  Aligned_cols=156  Identities=14%  Similarity=0.092  Sum_probs=96.1

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC---cccccc-cCeeEEE-EeCCCCCHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN---DHVKFY-FDCLAWV-RVSIAYDFGKMLDDII  261 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~---~~~~~~-F~~~~wv-~vs~~~~~~~i~~~i~  261 (394)
                      .++||++++++++..|....  ..-+.+||.+|+|||+|+..++..   ..+... ....+|. +++.-           
T Consensus        19 ~~igRd~Ei~~l~~iL~r~~--k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~l-----------   85 (268)
T d1r6bx2          19 PLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-----------   85 (268)
T ss_dssp             CCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred             cccChHHHHHHHHHHHhcCc--cCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechH-----------
Confidence            57999999999999997654  234559999999999998877752   122222 2345554 22111           


Q ss_pred             HHhCCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC-------C--chhHHHHHhhCCCCCCCcEEEEecCCh
Q 016120          262 KSVMPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-------N--SEIWSDLEELLPDDENGSRVLITVTDP  331 (394)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~-------~--~~~~~~l~~~l~~~~~gs~IivTTR~~  331 (394)
                        +.+..     ...+.+.....+.+.+ +.++.++++|++..       .  ..+...+..+.-. ...-++|.||..+
T Consensus        86 --iag~~-----~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~-rg~i~vIgatT~e  157 (268)
T d1r6bx2          86 --LAGTK-----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQ  157 (268)
T ss_dssp             ---CCCC-----CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHH
T ss_pred             --hccCc-----cchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHh-CCCCeEEEeCCHH
Confidence              11110     1115565555555555 45779999999876       0  1133444433322 2235788888887


Q ss_pred             HHHhhchhc----CCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          332 DLLASLEME----NGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       332 ~v~~~~~~~----~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                      .........    ..-..++     ++++  +.+++..++...
T Consensus       158 ey~~~~e~d~al~rrF~~I~-----V~Ep--s~e~t~~IL~~~  193 (268)
T d1r6bx2         158 EFSNIFEKDRALARRFQKID-----ITEP--SIEETVQIINGL  193 (268)
T ss_dssp             HHHCCCCCTTSSGGGEEEEE-----CCCC--CHHHHHHHHHHH
T ss_pred             HHHHHHhhcHHHHhhhcccc-----cCCC--CHHHHHHHHHHh
Confidence            776655221    2235667     9999  999999988653

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.41  E-value=1.7e-07  Score=81.99  Aligned_cols=156  Identities=13%  Similarity=0.033  Sum_probs=94.2

Q ss_pred             CCCCcccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccccc-ccCe-eEEEEeCCCCCHHHHHHH
Q 016120          182 GQPRLDINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKF-YFDC-LAWVRVSIAYDFGKMLDD  259 (394)
Q Consensus       182 ~~~~~~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~-~~wv~vs~~~~~~~i~~~  259 (394)
                      |..+.+++|.+..++++..++....  .+.+.++|++|+||||+|+.+.+  ++.. .+.. .+-++.+...+..     
T Consensus        20 P~~~~diig~~~~~~~l~~~i~~~~--~~~lll~Gp~G~GKTtla~~iak--~l~~~~~~~~~~e~n~s~~~~~~-----   90 (231)
T d1iqpa2          20 PQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELNASDERGIN-----   90 (231)
T ss_dssp             CCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEETTCHHHHH-----
T ss_pred             CCCHHHccCcHHHHHHHHHHHHcCC--CCeEEEECCCCCcHHHHHHHHHH--HHHhcccCCCeeEEecCcccchh-----
Confidence            3334499999999999999998763  45577999999999999999987  3321 1221 1222322211110     


Q ss_pred             HHHHhCCCCCCccccCcCHHHHHHHHHHH---ccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCC-hHHH
Q 016120          260 IIKSVMPPSRVSVIIGEDYQLKKSILRDY---LTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTD-PDLL  334 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~---l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~-~~v~  334 (394)
                                       ............   ...++.++++|++.. ....+..+...+........+|.||.. ..+.
T Consensus        91 -----------------~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~  153 (231)
T d1iqpa2          91 -----------------VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKII  153 (231)
T ss_dssp             -----------------TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred             -----------------HHHHHHHHHHhhhhccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhch
Confidence                             011111111111   123678899999987 556666666555444444555555544 3443


Q ss_pred             hhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          335 ASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      ...  .+....++     +.+.  +.++....+.+.+.
T Consensus       154 ~~l--~sR~~~i~-----~~~~--~~~~~~~~l~~~~~  182 (231)
T d1iqpa2         154 EPI--QSRCAIFR-----FRPL--RDEDIAKRLRYIAE  182 (231)
T ss_dssp             HHH--HHTEEEEE-----CCCC--CHHHHHHHHHHHHH
T ss_pred             HhH--hCcccccc-----cccc--chhhHHHHHHHHHH
Confidence            333  23456788     9999  99988888877754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.40  E-value=2e-06  Score=76.72  Aligned_cols=172  Identities=16%  Similarity=0.078  Sum_probs=106.5

Q ss_pred             ccceecccHHHHHHHHhc----CC-C--CceEEEEEcCCCccHHHHHHHHhcCcccccc------cCeeEEEEeCCCCCH
Q 016120          187 DINEFERGREELFDLLIE----GP-S--GLAVVAILDSSGFDKTVFTADTYNNDHVKFY------FDCLAWVRVSIAYDF  253 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~----~~-~--~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~------F~~~~wv~vs~~~~~  253 (394)
                      .+.||+.++++|.+.+..    +. +  ...++.++|++|+|||++++.+++.  ....      -....+++.......
T Consensus        17 ~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~~   94 (287)
T d1w5sa2          17 ELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAPNL   94 (287)
T ss_dssp             SCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHH--HHhhcccccCCceeeeeccccccch
Confidence            799999999999887642    11 1  1234566899999999999999873  2211      134567788888888


Q ss_pred             HHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHHHc--cCCeEEEEEeCCCC-------Cchh---HHHHHhhCCCC--
Q 016120          254 GKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYL--TNKKYFIVLDDVFD-------NSEI---WSDLEELLPDD--  318 (394)
Q Consensus       254 ~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l--~~kr~LlVlDdv~~-------~~~~---~~~l~~~l~~~--  318 (394)
                      ......+...++....    ... ........+.+..  .+...++++|.+..       ..+.   +..+...+...  
T Consensus        95 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~  170 (287)
T d1w5sa2          95 YTILSLIVRQTGYPIQ----VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG  170 (287)
T ss_dssp             HHHHHHHHHHHTCCCC----CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred             hhHHHHHhhhcccccc----cccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchhHHHHHHHHHHhcchhhc
Confidence            8888888888876654    122 5566666666655  34677888888764       1111   22223333322  


Q ss_pred             -CCCcEEEEecCChHHHhhch-----hcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          319 -ENGSRVLITVTDPDLLASLE-----MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       319 -~~gs~IivTTR~~~v~~~~~-----~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                       ..-..|++++..........     .......++     +++.  +.++..+++..++
T Consensus       171 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~-----f~~y--~~~el~~Il~~r~  222 (287)
T d1w5sa2         171 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLH-----LPAY--KSRELYTILEQRA  222 (287)
T ss_dssp             CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred             ccceeEEeecccHHHHHHHHhhccchhcccceeee-----ccCC--cHHHHHHHHhhhH
Confidence             22233444544432221100     012245677     9999  9999999998764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=5e-07  Score=79.92  Aligned_cols=163  Identities=10%  Similarity=0.046  Sum_probs=91.7

Q ss_pred             cccceecccHHHHHHHHhc---------------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCC
Q 016120          186 LDINEFERGREELFDLLIE---------------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIA  250 (394)
Q Consensus       186 ~~~~Gr~~~~~~i~~~L~~---------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~  250 (394)
                      .+++|.+..+++|.++|..               +....+.+.++|++|+||||+|+.+++.  ..   -...+++.+..
T Consensus        14 ~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~--~~---~~~~~~~~~~~   88 (253)
T d1sxja2          14 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE--LG---YDILEQNASDV   88 (253)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH--TT---CEEEEECTTSC
T ss_pred             HHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHH--HH---hhhhccccccc
Confidence            3899999999999999853               1123467889999999999999999983  22   12456666555


Q ss_pred             CCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC----CchhHHHHHhhCCCCCCCcEEEE
Q 016120          251 YDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD----NSEIWSDLEELLPDDENGSRVLI  326 (394)
Q Consensus       251 ~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~----~~~~~~~l~~~l~~~~~gs~Iiv  326 (394)
                      .+...+-. ...........   ... ..  .........++..++++|++..    ....+..+........  ..+++
T Consensus        89 ~~~~~~~~-~~~~~~~~~~~---~~~-~~--~~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~~~--~~ii~  159 (253)
T d1sxja2          89 RSKTLLNA-GVKNALDNMSV---VGY-FK--HNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTS--TPLIL  159 (253)
T ss_dssp             CCHHHHHH-TGGGGTTBCCS---TTT-TT--C----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCS--SCEEE
T ss_pred             hhhHHHHH-HHHHHhhcchh---hhh-hh--hhhhcccccccceEEEeeeccccccchhhhhHHHhhhhcccc--ccccc
Confidence            44433322 22222111110   000 00  0011112345678899999875    2233444443322222  23444


Q ss_pred             ecC--ChHHHhhchhcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          327 TVT--DPDLLASLEMENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       327 TTR--~~~v~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                      |+.  +.......  ......++     +.+.  +.++-...+.+..
T Consensus       160 i~~~~~~~~~~~l--~~~~~~i~-----f~~~--~~~~i~~~l~~i~  197 (253)
T d1sxja2         160 ICNERNLPKMRPF--DRVCLDIQ-----FRRP--DANSIKSRLMTIA  197 (253)
T ss_dssp             EESCTTSSTTGGG--TTTSEEEE-----CCCC--CHHHHHHHHHHHH
T ss_pred             ccccccccccccc--cceeeeee-----cccc--chhHHHHHHHHHH
Confidence            332  22222223  24566788     9999  9998888887764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=2.9e-06  Score=75.49  Aligned_cols=159  Identities=14%  Similarity=0.158  Sum_probs=91.6

Q ss_pred             ccceecccHHHHHHHHh----cC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLI----EG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~----~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|.+..+++|.+.+.    ..       -+..+-+.++|++|+|||++|+.+.+  ....+|   +.++.      . 
T Consensus         5 dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~--~~~~~~---~~i~~------~-   72 (258)
T d1e32a2           5 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLING------P-   72 (258)
T ss_dssp             GCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHH--HTTCEE---EEECH------H-
T ss_pred             hhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHH--HhCCeE---EEEEc------h-
Confidence            68899998888887643    11       12345678999999999999999998  333332   22211      1 


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--------CchhH----HHHHhhCC--CCCCC
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--------NSEIW----SDLEELLP--DDENG  321 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--------~~~~~----~~l~~~l~--~~~~g  321 (394)
                             .+.....     ......+.......-..++++|++||+..        +.+..    ..+...+.  ....+
T Consensus        73 -------~l~~~~~-----g~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (258)
T d1e32a2          73 -------EIMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH  140 (258)
T ss_dssp             -------HHTTSCT-----THHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSC
T ss_pred             -------hhccccc-----ccHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCC
Confidence                   1111100     11333344444444456889999999976        01111    12222111  22334


Q ss_pred             cEEEEecCChHHHhhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCCC
Q 016120          322 SRVLITVTDPDLLASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPL  376 (394)
Q Consensus       322 s~IivTTR~~~v~~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~~  376 (394)
                      .-||.||..+.-....-..  .-...++     +++.  +.++-..+|...++..+.
T Consensus       141 vlvi~tTn~~~~ld~al~r~gRfd~~i~-----~~~P--~~~~R~~il~~~l~~~~~  190 (258)
T d1e32a2         141 VIVMAATNRPNSIDPALRRFGRFDREVD-----IGIP--DATGRLEILQIHTKNMKL  190 (258)
T ss_dssp             EEEEEEESCGGGSCGGGTSTTSSCEEEE-----CCCC--CHHHHHHHHHHTTTTSCB
T ss_pred             ccEEEeCCCccccchhhhhcccccceeE-----CCCC--CHHHHHHHhhhhccCccc
Confidence            4455588776433322111  2467788     9999  999999999887765443

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.28  E-value=1.8e-06  Score=74.62  Aligned_cols=141  Identities=12%  Similarity=0.039  Sum_probs=83.7

Q ss_pred             HHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCcCH
Q 016120          199 FDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGEDY  278 (394)
Q Consensus       199 ~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~  278 (394)
                      .++....+.....+-|+|++|+|||.|++.+++  +.......+++++.      ......+...+...         ..
T Consensus        26 ~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---------~~   88 (213)
T d1l8qa2          26 KEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYSSA------DDFAQAMVEHLKKG---------TI   88 (213)
T ss_dssp             HHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEEEH------HHHHHHHHHHHHHT---------CH
T ss_pred             HHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHH--HhccCccceEEech------HHHHHHHHHHHHcc---------ch
Confidence            333333333334477999999999999999999  45444455566643      34444444443222         12


Q ss_pred             HHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHH-HhhCCC-CCCCcEEEEecCCh---------HHHhhchhcCCCce
Q 016120          279 QLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDL-EELLPD-DENGSRVLITVTDP---------DLLASLEMENGEKI  345 (394)
Q Consensus       279 ~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l-~~~l~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~~~  345 (394)
                      ....+    .+. .--+|+|||+..  ....|+.. ...+.. ...|..||+||+.+         ++...+   ....+
T Consensus        89 ~~~~~----~~~-~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL---~~g~~  160 (213)
T d1l8qa2          89 NEFRN----MYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRF---EGGIL  160 (213)
T ss_dssp             HHHHH----HHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHH---HTSEE
T ss_pred             hhHHH----HHh-hccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHh---hCceE
Confidence            22222    222 346899999986  34556542 222221 24677899999853         344444   45677


Q ss_pred             eeCCccCCCCCCCChHHHHHHHHHHhC
Q 016120          346 RRDSVLFGGPLIRLKHEAWQFFILHYG  372 (394)
Q Consensus       346 ~~~~~~~l~~L~~~~~~~~~Lf~~~~~  372 (394)
                      +.     ++ +  ++++-..++++++.
T Consensus       161 ~~-----i~-p--~d~~~~~iL~~~a~  179 (213)
T d1l8qa2         161 VE-----IE-L--DNKTRFKIIKEKLK  179 (213)
T ss_dssp             EE-----CC-C--CHHHHHHHHHHHHH
T ss_pred             EE-----EC-C--CcHHHHHHHHHHHH
Confidence            88     85 7  77777788877753

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=5.9e-06  Score=70.90  Aligned_cols=160  Identities=11%  Similarity=0.060  Sum_probs=90.4

Q ss_pred             cccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcc--cccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 016120          192 ERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDH--VKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSR  269 (394)
Q Consensus       192 ~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~--~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~  269 (394)
                      +...+++.+.+..+. -...+.++|+.|+||||+|+.+.+.--  .......     ....    .-...+.........
T Consensus         8 ~~~~~~l~~~~~~~~-l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~-----~~~~----~~~~~i~~~~~~~~~   77 (207)
T d1a5ta2           8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKS-----CGHC----RGCQLMQAGTHPDYY   77 (207)
T ss_dssp             HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBC-----CSCS----HHHHHHHHTCCTTEE
T ss_pred             HHHHHHHHHHHHcCC-cCeEEEEECCCCCcHHHHHHHHHHhccccccccccc-----cccc----chhhhhhhccccccc
Confidence            344666777666543 344578999999999999998765210  0000000     0000    000111111000000


Q ss_pred             Cc--c-ccCc-CHHHHHHHHHHHc-----cCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCChH-HHhhch
Q 016120          270 VS--V-IIGE-DYQLKKSILRDYL-----TNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDPD-LLASLE  338 (394)
Q Consensus       270 ~~--~-~~~~-~~~~~~~~l~~~l-----~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~~-v~~~~~  338 (394)
                      ..  . .-.. ..++.... .+.+     .+++-++|+|++.. +.+....+...+-....++.+|+||++.+ +...+ 
T Consensus        78 ~~~~~~~~~~i~~~~ir~l-~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI-  155 (207)
T d1a5ta2          78 TLAPEKGKNTLGVDAVREV-TEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATL-  155 (207)
T ss_dssp             EECCCTTCSSBCHHHHHHH-HHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHH-
T ss_pred             hhhhhhcccccccchhhHH-hhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhh-
Confidence            00  0 0011 33333222 2222     34677999999998 67778888888777677888888887753 44434 


Q ss_pred             hcCCCceeeCCccCCCCCCCChHHHHHHHHHHh
Q 016120          339 MENGEKIRRDSVLFGGPLIRLKHEAWQFFILHY  371 (394)
Q Consensus       339 ~~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~  371 (394)
                       .+....++     +.++  +.++....+.+..
T Consensus       156 -~SRc~~i~-----~~~~--~~~~~~~~L~~~~  180 (207)
T d1a5ta2         156 -RSRCRLHY-----LAPP--PEQYAVTWLSREV  180 (207)
T ss_dssp             -HTTSEEEE-----CCCC--CHHHHHHHHHHHC
T ss_pred             -cceeEEEe-----cCCC--CHHHHHHHHHHcC
Confidence             24567888     9999  9999988887653

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=3.4e-06  Score=71.27  Aligned_cols=152  Identities=10%  Similarity=0.048  Sum_probs=87.0

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC---ccccc-ccCeeEEEEeCCCCCHHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN---DHVKF-YFDCLAWVRVSIAYDFGKMLDDIIK  262 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~---~~~~~-~F~~~~wv~vs~~~~~~~i~~~i~~  262 (394)
                      .++||++++++++..|....  -.-+.++|.+|+|||+++..++..   .++-. .-+..+|.-     +...+      
T Consensus        23 ~~igRd~Ei~~l~~iL~r~~--k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~l-----d~~~L------   89 (195)
T d1jbka_          23 PVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL-----DMGAL------   89 (195)
T ss_dssp             CCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE-----CHHHH------
T ss_pred             CCcCcHHHHHHHHHHHhccC--CCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEe-----eHHHH------
Confidence            57999999999999998654  234568999999999998777752   12211 223455532     22221      


Q ss_pred             HhCCCCCCccccCcCHHHHHHHHHHHc-c-CCeEEEEEeCCCC--C-------chhHHHHHhhCCCCCCCcEEEEecCCh
Q 016120          263 SVMPPSRVSVIIGEDYQLKKSILRDYL-T-NKKYFIVLDDVFD--N-------SEIWSDLEELLPDDENGSRVLITVTDP  331 (394)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~--~-------~~~~~~l~~~l~~~~~gs~IivTTR~~  331 (394)
                       +.+...     ..+.+.....+.+.+ + ..+.+|++|++..  .       .+.-+-+..++..+  .-++|.||..+
T Consensus        90 -iAg~~~-----rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg--~l~~IgatT~e  161 (195)
T d1jbka_          90 -VAGAKY-----RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--ELHCVGATTLD  161 (195)
T ss_dssp             -HTTTCS-----HHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT--SCCEEEEECHH
T ss_pred             -hccCCc-----cHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCC--CceEEecCCHH
Confidence             111110     113333333333333 3 3579999999876  0       11223344444332  34678777776


Q ss_pred             HHHhhchh----cCCCceeeCCccCCCCCCCChHHHHHH
Q 016120          332 DLLASLEM----ENGEKIRRDSVLFGGPLIRLKHEAWQF  366 (394)
Q Consensus       332 ~v~~~~~~----~~~~~~~~~~~~~l~~L~~~~~~~~~L  366 (394)
                      ........    ...-..++     +++.  +.+++..+
T Consensus       162 ey~~~~e~d~aL~rrF~~I~-----V~Ep--~~e~t~~I  193 (195)
T d1jbka_         162 EYRQYIEKDAALERRFQKVF-----VAEP--SVEDTIAI  193 (195)
T ss_dssp             HHHHHTTTCHHHHTTEEEEE-----CCCC--CHHHHHTT
T ss_pred             HHHHHHHcCHHHHhcCCEee-----cCCC--CHHHHHHH
Confidence            65554421    12345677     8888  88877653

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=6.4e-06  Score=73.08  Aligned_cols=157  Identities=16%  Similarity=0.186  Sum_probs=89.4

Q ss_pred             ccceecccHHHHHHHH---hcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120          187 DINEFERGREELFDLL---IEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L---~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  256 (394)
                      +++|.+..+++|.+.+   ...       ....+.+.++|++|+|||++|+.+++  +...+|   +-++.+.-.+    
T Consensus        13 Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~--~~~~~~---~~i~~~~l~~----   83 (256)
T d1lv7a_          13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGSDFVE----   83 (256)
T ss_dssp             GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH--HHTCCE---EEECSCSSTT----
T ss_pred             HHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHH--HcCCCE---EEEEhHHhhh----
Confidence            8899988777775543   221       12345677999999999999999997  333222   2222221110    


Q ss_pred             HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC-----------Cchh----HHHHHhhCC--CCC
Q 016120          257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD-----------NSEI----WSDLEELLP--DDE  319 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-----------~~~~----~~~l~~~l~--~~~  319 (394)
                                ..     ...+...+...+...-+..+++|++||+..           ....    +..+...+.  ...
T Consensus        84 ----------~~-----~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~  148 (256)
T d1lv7a_          84 ----------MF-----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN  148 (256)
T ss_dssp             ----------SC-----CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred             ----------cc-----hhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence                      00     111444455555544466789999999852           0011    222332222  123


Q ss_pred             CCcEEEEecCChHHH-hhchhc--CCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120          320 NGSRVLITVTDPDLL-ASLEME--NGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP  375 (394)
Q Consensus       320 ~gs~IivTTR~~~v~-~~~~~~--~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~  375 (394)
                      .+--||-||..++-. ..+ ..  .-.+.+.     +++.  +.++-..+|+......+
T Consensus       149 ~~v~vIatTn~~~~ld~al-~R~gRfd~~i~-----i~~P--~~~~R~~il~~~l~~~~  199 (256)
T d1lv7a_         149 EGIIVIAATNRPDVLDPAL-LRPGRFDRQVV-----VGLP--DVRGREQILKVHMRRVP  199 (256)
T ss_dssp             SCEEEEEEESCTTTSCGGG-GSTTSSCEEEE-----CCCC--CHHHHHHHHHHHHTTSC
T ss_pred             CCEEEEEeCCCcccCCHhH-cCCCCCCEEEE-----CCCc--CHHHHHHHHHHhccCCC
Confidence            344455577765432 222 11  1356777     9999  99998999988765433

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.09  E-value=2.3e-05  Score=69.01  Aligned_cols=158  Identities=13%  Similarity=0.151  Sum_probs=86.1

Q ss_pred             ccceecccHHHHHHHH---hcC-------CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHH
Q 016120          187 DINEFERGREELFDLL---IEG-------PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L---~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i  256 (394)
                      +++|.+..+++|.+.+   ...       -...+-+.++|++|+|||+||+.+.+  +...+|   +-++.      .. 
T Consensus        10 di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~--~~~~~~---~~i~~------~~-   77 (247)
T d1ixza_          10 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVPF---ITASG------SD-   77 (247)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH--HTTCCE---EEEEH------HH-
T ss_pred             HHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHH--HcCCCE---EEEEh------HH-
Confidence            8899888776665433   221       12345678999999999999999998  333222   22221      11 


Q ss_pred             HHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC---C--------ch----hHHHHHhhCCC--CC
Q 016120          257 LDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD---N--------SE----IWSDLEELLPD--DE  319 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~---~--------~~----~~~~l~~~l~~--~~  319 (394)
                         ++...         .+.+...+...+...-...+++|+|||+..   +        ..    ....+...+..  ..
T Consensus        78 ---l~~~~---------~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~  145 (247)
T d1ixza_          78 ---FVEMF---------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD  145 (247)
T ss_dssp             ---HHHSC---------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred             ---hhhcc---------ccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence               11110         111333333333333356789999999853   0        00    12223222211  22


Q ss_pred             CCcEEEEecCChH-HHhhchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCC
Q 016120          320 NGSRVLITVTDPD-LLASLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMP  375 (394)
Q Consensus       320 ~gs~IivTTR~~~-v~~~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~  375 (394)
                      .+.-||-||..+. +...+-. ..-...+.     +++.  +.++-..+|+......+
T Consensus       146 ~~vivi~tTn~~~~ld~al~R~~Rf~~~i~-----~~~P--~~~eR~~il~~~l~~~~  196 (247)
T d1ixza_         146 TAIVVMAATNRPDILDPALLRPGRFDRQIA-----IDAP--DVKGREQILRIHARGKP  196 (247)
T ss_dssp             CCEEEEEEESCGGGSCGGGGSTTSSCEEEE-----CCSC--CHHHHHHHHHHHHTTSC
T ss_pred             CCEEEEEeCCCccccCHhHcCCCCCcEEEE-----ECCc--CHHHHHHHHHHHhcccC
Confidence            2322333666543 2222200 01346778     9999  99999999988865433

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.05  E-value=1.7e-05  Score=74.36  Aligned_cols=154  Identities=9%  Similarity=0.063  Sum_probs=84.8

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC---cccc-cccCeeEEE-EeCCCCCHHHHHHHHH
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN---DHVK-FYFDCLAWV-RVSIAYDFGKMLDDII  261 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~---~~~~-~~F~~~~wv-~vs~~~~~~~i~~~i~  261 (394)
                      .++||+.+++++++.|.....+.  +.+||.+|||||+|+..++..   ..+- .-.+.++|. +++.      +    +
T Consensus        23 ~~~gr~~ei~~~~~~L~r~~k~n--~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~------l----~   90 (387)
T d1qvra2          23 PVIGRDEEIRRVIQILLRRTKNN--PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS------L----L   90 (387)
T ss_dssp             CCCSCHHHHHHHHHHHHCSSCCC--CEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred             CCcCcHHHHHHHHHHHhcCCCCC--CeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhh------h----h
Confidence            57999999999999998654333  357899999999987655541   1222 223455554 3321      1    1


Q ss_pred             HHhCCCCCCccccCcCHHHHHHHHHHHc-cC-CeEEEEEeCCCC--C-------chhHHHHHhhCCCCCCCcEEEEecCC
Q 016120          262 KSVMPPSRVSVIIGEDYQLKKSILRDYL-TN-KKYFIVLDDVFD--N-------SEIWSDLEELLPDDENGSRVLITVTD  330 (394)
Q Consensus       262 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~-kr~LlVlDdv~~--~-------~~~~~~l~~~l~~~~~gs~IivTTR~  330 (394)
                      .   +..     +....+.....+...+ .. .+++|++|++..  .       .+.-+-|..+|..+.  -++|-||..
T Consensus        91 a---g~~-----~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~--~~~I~~tT~  160 (387)
T d1qvra2          91 A---GAK-----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGE--LRLIGATTL  160 (387)
T ss_dssp             ---------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTC--CCEEEEECH
T ss_pred             c---ccC-----cchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCC--cceeeecCH
Confidence            0   000     0114444444444444 33 479999999976  0       011233344443333  456776666


Q ss_pred             hHHHhhchh----cCCCceeeCCccCCCCCCCChHHHHHHHHHH
Q 016120          331 PDLLASLEM----ENGEKIRRDSVLFGGPLIRLKHEAWQFFILH  370 (394)
Q Consensus       331 ~~v~~~~~~----~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~  370 (394)
                      ..... ...    ...-..++     +++.  +.+++..++...
T Consensus       161 ~ey~~-~e~d~al~rrF~~v~-----v~ep--~~~~~~~il~~~  196 (387)
T d1qvra2         161 DEYRE-IEKDPALERRFQPVY-----VDEP--TVEETISILRGL  196 (387)
T ss_dssp             HHHHH-HTTCTTTCSCCCCEE-----ECCC--CHHHHHHHHHHH
T ss_pred             HHHHH-hcccHHHHHhccccc-----CCCC--cHHHHHHHHHHH
Confidence            55543 222    12345666     9999  999999988754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=1.1e-05  Score=72.01  Aligned_cols=161  Identities=12%  Similarity=0.136  Sum_probs=89.2

Q ss_pred             ccceecccHHHHHHHHhc-----------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHH
Q 016120          187 DINEFERGREELFDLLIE-----------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      ++.|.++.+++|.+.+..           +-...+-+.++|++|+|||+||+.+++  +...+|     +.++    ...
T Consensus         8 di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~--~~~~~~-----~~~~----~~~   76 (265)
T d1r7ra3           8 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISIK----GPE   76 (265)
T ss_dssp             SCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHH--HTTCEE-----EEEC----HHH
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHH--HhCCcE-----EEEE----HHH
Confidence            788988887777766531           112345677999999999999999998  443332     2221    111


Q ss_pred             HHHHHHHHhCCCCCCccccCcCHHHHHHHHHHHccCCeEEEEEeCCCC--C-----ch--------hHHHHHhhCCC--C
Q 016120          256 MLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDDVFD--N-----SE--------IWSDLEELLPD--D  318 (394)
Q Consensus       256 i~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~--~-----~~--------~~~~l~~~l~~--~  318 (394)
                          +..   ..      .......+...+...-...+++|+|||+..  .     ..        ....+...+..  .
T Consensus        77 ----l~~---~~------~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~  143 (265)
T d1r7ra3          77 ----LLT---MW------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST  143 (265)
T ss_dssp             ----HHT---SC------TTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC----
T ss_pred             ----hhh---cc------ccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCC
Confidence                111   11      011333344444444456789999999974  0     01        11233333432  1


Q ss_pred             CCCcEEEEecCChH-HHhhchh-cCCCceeeCCccCCCCCCCChHHHHHHHHHHhCCCCCCC
Q 016120          319 ENGSRVLITVTDPD-LLASLEM-ENGEKIRRDSVLFGGPLIRLKHEAWQFFILHYGSMPLEN  378 (394)
Q Consensus       319 ~~gs~IivTTR~~~-v~~~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~Lf~~~~~~~~~~~  378 (394)
                      .++--||.||..++ +-..+-. +.-...++     +++.  +.++-..+|+..+.......
T Consensus       144 ~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~-----~~~p--~~~~R~~il~~~l~~~~~~~  198 (265)
T d1r7ra3         144 KKNVFIIGATNRPDIIDPAILRPGRLDQLIY-----IPLP--DEKSRVAILKANLRKSPVAK  198 (265)
T ss_dssp             --CCEEEECCBSCTTTSCGGGSSTTSEEEEE-----CCCC--CCHHHHHHHHHHTTCC----
T ss_pred             CCCEEEEEeCCCchhCCHHHhCCCCccEEEE-----ecch--HHHHHHHHHHHHhccCCchh
Confidence            23344566776654 2222210 12356778     9999  99999999987776544333

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.96  E-value=3.2e-05  Score=67.30  Aligned_cols=45  Identities=18%  Similarity=0.100  Sum_probs=37.4

Q ss_pred             ccceecccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|.+..+++|..++...   +...+-+.++|++|+||||+|+.+.+
T Consensus        10 divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          10 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHh
Confidence            8999999999999888532   22345567999999999999999988

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.89  E-value=1.9e-05  Score=69.46  Aligned_cols=153  Identities=17%  Similarity=0.142  Sum_probs=80.7

Q ss_pred             ccceecccHHHHHHHHh-------cC-CCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHH
Q 016120          187 DINEFERGREELFDLLI-------EG-PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLD  258 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~-------~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~  258 (394)
                      .++|..+.++.+++.+.       .. ....+-|.++|++|+|||++|+.+++  +...+|   +.++.+..+       
T Consensus        10 ~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~--~~~~~~---~~i~~~~~~-------   77 (246)
T d1d2na_          10 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE--ESNFPF---IKICSPDKM-------   77 (246)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH--HHTCSE---EEEECGGGC-------
T ss_pred             CCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhh--cccccc---ccccccccc-------
Confidence            57777776666655543       22 23456788999999999999999998  444333   223322111       


Q ss_pred             HHHHHhCCCCCCccccCcC-HHHHHHHHHHHccCCeEEEEEeCCCC-----------CchhHHHHHhhCCCC-CCCcEE-
Q 016120          259 DIIKSVMPPSRVSVIIGED-YQLKKSILRDYLTNKKYFIVLDDVFD-----------NSEIWSDLEELLPDD-ENGSRV-  324 (394)
Q Consensus       259 ~i~~~l~~~~~~~~~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~-----------~~~~~~~l~~~l~~~-~~gs~I-  324 (394)
                            .+.      ...+ ...+...+...-+..+++|+||++..           .......+...+... ..+++| 
T Consensus        78 ------~g~------~~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~  145 (246)
T d1d2na_          78 ------IGF------SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL  145 (246)
T ss_dssp             ------TTC------CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred             ------ccc------cccchhhhhhhhhhhhhhcccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCcccccee
Confidence                  000      0001 12233333344456789999999852           011223444444322 234444 


Q ss_pred             -EEecCChHHHhhchh-cCCCceeeCCccCCCCCCCC-hHHHHHHHHHH
Q 016120          325 -LITVTDPDLLASLEM-ENGEKIRRDSVLFGGPLIRL-KHEAWQFFILH  370 (394)
Q Consensus       325 -ivTTR~~~v~~~~~~-~~~~~~~~~~~~~l~~L~~~-~~~~~~Lf~~~  370 (394)
                       |.||..++....... ..-...+.     ++.+  + .++-+..+...
T Consensus       146 vi~tTn~~~~ld~~~~~~rF~~~i~-----~P~~--~~r~~il~~l~~~  187 (246)
T d1d2na_         146 IIGTTSRKDVLQEMEMLNAFSTTIH-----VPNI--ATGEQLLEALELL  187 (246)
T ss_dssp             EEEEESCHHHHHHTTCTTTSSEEEE-----CCCE--EEHHHHHHHHHHH
T ss_pred             eeeccCChhhccchhhcCccceEEe-----cCCc--hhHHHHHHHHHhc
Confidence             447777765543211 11234566     7555  4 44555555543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.80  E-value=6e-05  Score=65.52  Aligned_cols=45  Identities=18%  Similarity=0.172  Sum_probs=37.0

Q ss_pred             ccceecccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++|-+..++++..++...   ....+-+.++|++|+||||+|+.+++
T Consensus        10 divGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          10 EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             GSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            8999999999888887532   22355667999999999999999987

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=0.00035  Score=63.42  Aligned_cols=128  Identities=12%  Similarity=0.121  Sum_probs=72.0

Q ss_pred             ccceecccHHHHHHHHhc-------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120          187 DINEFERGREELFDLLIE-------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD  259 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~  259 (394)
                      .++|.++.++.+...+..       .+....++.++|+.|+|||.||+.+..  .+.   ...+-++++.-.+...    
T Consensus        23 ~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~--~l~---~~~i~~d~s~~~~~~~----   93 (315)
T d1r6bx3          23 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK--ALG---IELLRFDMSEYMERHT----   93 (315)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH--HHT---CEEEEEEGGGCSSSSC----
T ss_pred             eecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHh--hcc---CCeeEeccccccchhh----
Confidence            689999999988776631       133456888999999999999999987  222   2223334332111000    


Q ss_pred             HHHHhCCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEEE
Q 016120          260 IIKSVMPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-NSEIWSDLEELLPDD-----------ENGSRVLI  326 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~Iiv  326 (394)
                       +..+-+..+     ..........+...+ +....++.||++.. .++.|+.+...+..+           ...+-||.
T Consensus        94 -~~~l~g~~~-----gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~~V~~~lLqild~G~ltd~~Gr~vdf~n~iiI~  167 (315)
T d1r6bx3          94 -VSRLIGAPP-----GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVM  167 (315)
T ss_dssp             -CSSSCCCCS-----CSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEE
T ss_pred             -hhhhcccCC-----CccccccCChhhHHHHhCccchhhhcccccccchHhhhhHHhhccceecCCCCCccCccceEEEe
Confidence             011111111     110001111222233 35567899999998 677777776655321           23455677


Q ss_pred             ecC
Q 016120          327 TVT  329 (394)
Q Consensus       327 TTR  329 (394)
                      ||.
T Consensus       168 Tsn  170 (315)
T d1r6bx3         168 TTN  170 (315)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            776

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.47  E-value=0.00032  Score=59.25  Aligned_cols=116  Identities=6%  Similarity=-0.057  Sum_probs=68.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCc--ccccccCeeEEEEeCC-CCCHHHHHHHHHHHhCCCCCCccccCcCHHHHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNND--HVKFYFDCLAWVRVSI-AYDFGKMLDDIIKSVMPPSRVSVIIGEDYQLKKSI  284 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~--~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~~~~  284 (394)
                      ....+.++|.+|+|||++|..+.+..  ....|-| .+++.... ...+..+ +++.+.+.....               
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D-~~~i~~~~~~I~Id~I-R~i~~~~~~~~~---------------   76 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSPE---------------   76 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCCS---------------
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCC-EEEEeCCcCCCCHHHH-HHHHHHHhhCcc---------------
Confidence            47788899999999999999887621  1112223 33443211 1122222 123333222211               


Q ss_pred             HHHHccCCeEEEEEeCCCC-CchhHHHHHhhCCCCCCCcEEEEecCCh-HHHhhchhcCCCceee
Q 016120          285 LRDYLTNKKYFIVLDDVFD-NSEIWSDLEELLPDDENGSRVLITVTDP-DLLASLEMENGEKIRR  347 (394)
Q Consensus       285 l~~~l~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~~~gs~IivTTR~~-~v~~~~~~~~~~~~~~  347 (394)
                           .+++=++|+|++.. +...++.|...+-.-..++.+|++|.+. .+....  .+....+.
T Consensus        77 -----~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI--~SRC~~i~  134 (198)
T d2gnoa2          77 -----LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTI--KSRVFRVV  134 (198)
T ss_dssp             -----SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHH--HTTSEEEE
T ss_pred             -----cCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHH--hcceEEEe
Confidence                 24555899999998 7778888877776555677777766664 444444  24455666

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.00015  Score=62.70  Aligned_cols=128  Identities=9%  Similarity=0.123  Sum_probs=60.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCc------------cc------c-------cccCeeEEEEeCCCC------------C
Q 016120          210 AVVAILDSSGFDKTVFTADTYNND------------HV------K-------FYFDCLAWVRVSIAY------------D  252 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~------------~~------~-------~~F~~~~wv~vs~~~------------~  252 (394)
                      .+++|+|+.|+|||||.+.++.-.            .+      +       +.|....+.+|-++.            .
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~  106 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV  106 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------CH
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccccccccchhHHHHHHHHHHHcCCCHHH
Confidence            589999999999999999995311            11      0       111111122222211            1


Q ss_pred             HHHHHHHHHHHhCCCCCCccccCc-C-HHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEE
Q 016120          253 FGKMLDDIIKSVMPPSRVSVIIGE-D-YQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLI  326 (394)
Q Consensus       253 ~~~i~~~i~~~l~~~~~~~~~~~~-~-~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~Iiv  326 (394)
                      ..+-..++++.++........... + -+...-.+...|-..+=+|++|.--.  |+..-..+...+..  ...|..||+
T Consensus       107 ~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~  186 (232)
T d2awna2         107 INQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY  186 (232)
T ss_dssp             HHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred             HHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            223345566666554321111122 1 11222234445556678899999776  33322333333322  234777999


Q ss_pred             ecCChHHHhhc
Q 016120          327 TVTDPDLLASL  337 (394)
Q Consensus       327 TTR~~~v~~~~  337 (394)
                      +|.+.+.+..+
T Consensus       187 vTHd~~~a~~~  197 (232)
T d2awna2         187 VTHDQVEAMTL  197 (232)
T ss_dssp             EESCHHHHHHH
T ss_pred             EeCCHHHHHHh
Confidence            99998777766

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.21  E-value=0.0022  Score=55.09  Aligned_cols=56  Identities=20%  Similarity=0.273  Sum_probs=36.0

Q ss_pred             HHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhc
Q 016120          282 KSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       282 ~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~  337 (394)
                      .-.+...|..++-+|++|.--.  |+..-..+...+..  ...|..||++|.+.+++..+
T Consensus       153 RvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~  212 (230)
T d1l2ta_         153 RVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFG  212 (230)
T ss_dssp             HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTS
T ss_pred             HHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhC
Confidence            3445556677788899999876  33333333333332  24577899999999988643

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.21  E-value=0.00031  Score=63.82  Aligned_cols=132  Identities=11%  Similarity=0.159  Sum_probs=69.3

Q ss_pred             ccceecccHHHHHHHHhc-------CCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHH
Q 016120          187 DINEFERGREELFDLLIE-------GPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDD  259 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~  259 (394)
                      .++|.+..++.+...+..       .+....++.++|+.|+|||.+|+.+..  .+-..-...+-++.+.-.+... ...
T Consensus        24 ~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~--~l~~~~~~~~~~~~~~~~~~~~-~~~  100 (315)
T d1qvra3          24 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTEYMEKHA-VSR  100 (315)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH--HHHSSGGGEEEECTTTCCSSGG-GGG
T ss_pred             eEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHH--HhcCCCcceEEEeccccccchh-hhh
Confidence            688999888888776642       122345888999999999999998876  2211111222233332221111 000


Q ss_pred             HHHHhCCCCCCccccCcCHHHHHHHHHHHc-cCCeEEEEEeCCCC-CchhHHHHHhhCCCC-----------CCCcEEEE
Q 016120          260 IIKSVMPPSRVSVIIGEDYQLKKSILRDYL-TNKKYFIVLDDVFD-NSEIWSDLEELLPDD-----------ENGSRVLI  326 (394)
Q Consensus       260 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~-~~~~~~~l~~~l~~~-----------~~gs~Iiv  326 (394)
                      +   ++.+..   ....+.   ...+.+.+ +....+++||++.. .++.|+.+...+..+           ..++-+|+
T Consensus       101 L---~g~~~g---yvG~~~---~~~l~~~~~~~p~~Vvl~DEieK~~~~v~~~ll~~l~~g~~~~~~gr~v~~~~~i~i~  171 (315)
T d1qvra3         101 L---IGAPPG---YVGYEE---GGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIIL  171 (315)
T ss_dssp             C-----------------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEE
T ss_pred             h---cCCCCC---CcCccc---CChHHHHHHhCCCcEEEEehHhhcCHHHHHHHHHHhccCceeCCCCcEecCcceEEEE
Confidence            0   111110   000011   11233333 24578999999997 577777776665432           13355666


Q ss_pred             ecCC
Q 016120          327 TVTD  330 (394)
Q Consensus       327 TTR~  330 (394)
                      ||.-
T Consensus       172 tsnl  175 (315)
T d1qvra3         172 TSNL  175 (315)
T ss_dssp             ECCT
T ss_pred             eccc
Confidence            6663

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.13  E-value=0.00081  Score=58.16  Aligned_cols=125  Identities=14%  Similarity=0.033  Sum_probs=68.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE----------------EeCCC-------------------CC--
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV----------------RVSIA-------------------YD--  252 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv----------------~vs~~-------------------~~--  252 (394)
                      .+++|+|+.|+|||||.+.++.-..   .-...+|+                .+.++                   .+  
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~  101 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV  101 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhcccCHH
Confidence            3778999999999999999975211   11111221                00111                   11  


Q ss_pred             -HHHHHHHHHHHhCCCCCCccccCc-CHH-HHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEE
Q 016120          253 -FGKMLDDIIKSVMPPSRVSVIIGE-DYQ-LKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVL  325 (394)
Q Consensus       253 -~~~i~~~i~~~l~~~~~~~~~~~~-~~~-~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~Ii  325 (394)
                       ..+-..++++.++........... +-. ...-.+...|-.++-+|+||.--.  ++..-..+...+..  ...|..||
T Consensus       102 ~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi  181 (240)
T d2onka1         102 ERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL  181 (240)
T ss_dssp             HHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence             123456666666665432222233 222 223345556677888899999766  33322333332221  12356688


Q ss_pred             EecCChHHHhhc
Q 016120          326 ITVTDPDLLASL  337 (394)
Q Consensus       326 vTTR~~~v~~~~  337 (394)
                      ++|.+.+.+..+
T Consensus       182 ~vtHd~~~~~~~  193 (240)
T d2onka1         182 HVTHDLIEAAML  193 (240)
T ss_dssp             EEESCHHHHHHH
T ss_pred             EEeCCHHHHHHh
Confidence            888887666655

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.10  E-value=0.0011  Score=57.30  Aligned_cols=128  Identities=9%  Similarity=0.081  Sum_probs=68.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcc------------ccc--cc-CeeEEEE----------eCC---------CCC---
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDH------------VKF--YF-DCLAWVR----------VSI---------AYD---  252 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~--~F-~~~~wv~----------vs~---------~~~---  252 (394)
                      .+++|+|+.|+|||||.+.+..-.+            +..  .- ..+.+|.          |.+         ..+   
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~  112 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDE  112 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHHHcCCCHHH
Confidence            5899999999999999999964110            100  00 0111221          100         111   


Q ss_pred             HHHHHHHHHHHhCCCCCCccccCc--CHHHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEE
Q 016120          253 FGKMLDDIIKSVMPPSRVSVIIGE--DYQLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLI  326 (394)
Q Consensus       253 ~~~i~~~i~~~l~~~~~~~~~~~~--~~~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~Iiv  326 (394)
                      ..+...++++.++...........  .-+...-.+...|..++=+|+||.--.  |+..=..+...+..  ...|..||+
T Consensus       113 ~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~  192 (239)
T d1v43a3         113 IDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY  192 (239)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence            223345566666554322212222  122223345556667788999999766  33322333222222  123677999


Q ss_pred             ecCChHHHhhc
Q 016120          327 TVTDPDLLASL  337 (394)
Q Consensus       327 TTR~~~v~~~~  337 (394)
                      +|.+...+..+
T Consensus       193 vTHd~~~a~~~  203 (239)
T d1v43a3         193 VTHDQVEAMTM  203 (239)
T ss_dssp             EESCHHHHHHH
T ss_pred             EeCCHHHHHHh
Confidence            99998877666

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.00054  Score=56.34  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=22.1

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhc
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +...+|.++|++|+||||+|+.+..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567999999999999999998875

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.04  E-value=0.0019  Score=55.79  Aligned_cols=55  Identities=11%  Similarity=0.196  Sum_probs=34.7

Q ss_pred             HHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEecCChHHHhhc
Q 016120          283 SILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       283 ~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTTR~~~v~~~~  337 (394)
                      -.+...|..++-+|++|.--.  |+..-..+...+..  ...|..||++|.+.+.+..+
T Consensus       148 v~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~  206 (240)
T d1g2912         148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTM  206 (240)
T ss_dssp             HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHh
Confidence            445556677888999999766  33322333333322  12377799999998777665

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.03  E-value=0.0013  Score=57.89  Aligned_cols=90  Identities=14%  Similarity=0.062  Sum_probs=63.0

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHH
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSIL  285 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l  285 (394)
                      +.-++.-|.|.+|+||||+|..++..  .+..-..++|++....++...     +++++.....---... +.++..+.+
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~--~q~~g~~~vyIDtE~~~~~e~-----a~~~GvD~d~il~~~~~~~E~~~~~~  130 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPDY-----AKKLGVDTDSLLVSQPDTGEQALEIA  130 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHH--HHHTTCEEEEEESSCCCCHHH-----HHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHH--HhcCCCEEEEEECCccCCHHH-----HHHhCCCHHHeEEecCCCHHHHHHHH
Confidence            45678899999999999999888763  333334689999999898765     5666655332111222 566666666


Q ss_pred             HHHcc-CCeEEEEEeCCCC
Q 016120          286 RDYLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       286 ~~~l~-~kr~LlVlDdv~~  303 (394)
                      ...++ ++.-|+|+|.+-.
T Consensus       131 ~~l~~~~~~~liIiDSi~a  149 (269)
T d1mo6a1         131 DMLIRSGALDIVVIDSVAA  149 (269)
T ss_dssp             HHHHHTTCEEEEEEECSTT
T ss_pred             HHHHhcCCCCEEEEecccc
Confidence            66664 4578999999965

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.97  E-value=0.00015  Score=59.56  Aligned_cols=23  Identities=26%  Similarity=0.250  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ++.|+|.|+.|+||||||+.+..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999987

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00012  Score=58.85  Aligned_cols=22  Identities=9%  Similarity=0.126  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +.|.++|++|+||||+|+.+..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3577889999999999999987

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.93  E-value=0.0043  Score=53.08  Aligned_cols=127  Identities=17%  Similarity=0.130  Sum_probs=68.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcc------------cccccC----eeEEE----------EeCC---------CCCHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDH------------VKFYFD----CLAWV----------RVSI---------AYDFG  254 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~~F~----~~~wv----------~vs~---------~~~~~  254 (394)
                      .+++|+|+.|+|||||.+.+..-..            +.+ ..    ...+|          +|.+         .....
T Consensus        27 e~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~-~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~  105 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD-LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP  105 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTT-SCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccc-cchhHhcceeeccccccCccccHHHHHHHHHhhccccHH
Confidence            4899999999999999999964211            100 00    01111          1110         00112


Q ss_pred             HHHHHHHHHhCCCCCCccccCc-CH-HHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCCcEEEEec
Q 016120          255 KMLDDIIKSVMPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENGSRVLITV  328 (394)
Q Consensus       255 ~i~~~i~~~l~~~~~~~~~~~~-~~-~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~gs~IivTT  328 (394)
                      +-..++++.++........... +- +...-.+...|-.++=+|+||.--.  ++..-..+...+..  ...|..||++|
T Consensus       106 ~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vt  185 (229)
T d3d31a2         106 KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT  185 (229)
T ss_dssp             HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence            2345556666554332222333 22 2233445556777888899999766  33322333333222  13466788888


Q ss_pred             CChHHHhhc
Q 016120          329 TDPDLLASL  337 (394)
Q Consensus       329 R~~~v~~~~  337 (394)
                      .+...+...
T Consensus       186 Hd~~~~~~~  194 (229)
T d3d31a2         186 HDQTEARIM  194 (229)
T ss_dssp             SCHHHHHHH
T ss_pred             CCHHHHHHh
Confidence            888766655

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.93  E-value=0.00019  Score=62.48  Aligned_cols=129  Identities=10%  Similarity=0.088  Sum_probs=69.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcc------------ccccc----CeeEEEEeCC----CCCH---------------
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDH------------VKFYF----DCLAWVRVSI----AYDF---------------  253 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~~F----~~~~wv~vs~----~~~~---------------  253 (394)
                      -.+++|+|+.|.|||||.+.+..-..            +...-    ....++.-..    ..+.               
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~  107 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSS  107 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcCCCH
Confidence            35899999999999999999964211            10000    1233442211    1111               


Q ss_pred             ---HHHHHHHHHHhCCCCCCccccCc-CHHH-HHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC-CCCCcEEE
Q 016120          254 ---GKMLDDIIKSVMPPSRVSVIIGE-DYQL-KKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD-DENGSRVL  325 (394)
Q Consensus       254 ---~~i~~~i~~~l~~~~~~~~~~~~-~~~~-~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~-~~~gs~Ii  325 (394)
                         ......+++.++........... +..+ ..-.+...|..++=+|+||.--.  ++.....+...+.. ...|..||
T Consensus       108 ~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii  187 (238)
T d1vpla_         108 SEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL  187 (238)
T ss_dssp             HHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence               22233444444433221112233 3222 23345555677778889999876  44333333333321 13467799


Q ss_pred             EecCChHHHhhc
Q 016120          326 ITVTDPDLLASL  337 (394)
Q Consensus       326 vTTR~~~v~~~~  337 (394)
                      +||.+.+.+...
T Consensus       188 ~~tH~l~~~~~~  199 (238)
T d1vpla_         188 VSSHNMLEVEFL  199 (238)
T ss_dssp             EEECCHHHHTTT
T ss_pred             EEeCCHHHHHHh
Confidence            999998877766

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.90  E-value=0.0005  Score=57.01  Aligned_cols=37  Identities=19%  Similarity=0.118  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcC-CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          195 REELFDLLIEG-PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       195 ~~~i~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ++.|.+....- ..+.-+|+|.|.+|+||||||+.+..
T Consensus         7 ~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_           7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            44444444333 34567899999999999999999976

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.0002  Score=58.06  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++++|+|..|+|||||++.+.+
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999986

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.90  E-value=0.0017  Score=56.62  Aligned_cols=45  Identities=16%  Similarity=0.060  Sum_probs=33.9

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ++||....+.++.+.+..-.....-|.|.|..|+|||++|+.++.
T Consensus         1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence            468888888888887765322223357899999999999999976

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00026  Score=61.51  Aligned_cols=128  Identities=10%  Similarity=0.151  Sum_probs=69.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcc------------ccc-------cc-CeeEEEEeCC----C---------------
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDH------------VKF-------YF-DCLAWVRVSI----A---------------  250 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~------------~~~-------~F-~~~~wv~vs~----~---------------  250 (394)
                      .+++|+|+.|+|||||++.++--.+            +..       .+ ..+.+|.-..    .               
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~  111 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN  111 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcC
Confidence            5899999999999999999964211            000       00 0112221000    0               


Q ss_pred             C---CHHHHHHHHHHHhCCCCCCccccCc-CHHH-HHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCC
Q 016120          251 Y---DFGKMLDDIIKSVMPPSRVSVIIGE-DYQL-KKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENG  321 (394)
Q Consensus       251 ~---~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~-~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~g  321 (394)
                      .   ...+...++++.++........... +-.+ ..-.+...|..++-+|++|.--.  |+..-..+...+..  ...|
T Consensus       112 ~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g  191 (240)
T d3dhwc1         112 TPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG  191 (240)
T ss_dssp             CCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccC
Confidence            0   1233445666666654332222233 3332 23345556677888999998654  33222333333322  2337


Q ss_pred             cEEEEecCChHHHhhc
Q 016120          322 SRVLITVTDPDLLASL  337 (394)
Q Consensus       322 s~IivTTR~~~v~~~~  337 (394)
                      ..||++|.+..++..+
T Consensus       192 ~tvi~vTHdl~~~~~~  207 (240)
T d3dhwc1         192 LTILLITHEMDVVKRI  207 (240)
T ss_dssp             CEEEEEBSCHHHHHHH
T ss_pred             CEEEEEcCCHHHHHHh
Confidence            7899999998887766

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.87  E-value=0.0026  Score=55.00  Aligned_cols=128  Identities=19%  Similarity=0.207  Sum_probs=68.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCc------------ccc-------ccc-CeeEEEEeCC----CCC-------------
Q 016120          210 AVVAILDSSGFDKTVFTADTYNND------------HVK-------FYF-DCLAWVRVSI----AYD-------------  252 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~------------~~~-------~~F-~~~~wv~vs~----~~~-------------  252 (394)
                      .+++|+|+.|+|||||.+.+..-.            .+.       ... ..+-+|.-..    ..+             
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~  111 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK  111 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhhc
Confidence            589999999999999999996411            010       000 0122221110    001             


Q ss_pred             -----HHHHHHHHHHHhCCCCCCccccCc-CH-HHHHHHHHHHccCCeEEEEEeCCCC--CchhHHHHHhhCCC--CCCC
Q 016120          253 -----FGKMLDDIIKSVMPPSRVSVIIGE-DY-QLKKSILRDYLTNKKYFIVLDDVFD--NSEIWSDLEELLPD--DENG  321 (394)
Q Consensus       253 -----~~~i~~~i~~~l~~~~~~~~~~~~-~~-~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~l~~~l~~--~~~g  321 (394)
                           ..+-..++++.++..........+ +- +...-.+...|..++-+|++|.--.  |+..-..+...+..  ...|
T Consensus       112 ~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g  191 (242)
T d1oxxk2         112 MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG  191 (242)
T ss_dssp             CCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccC
Confidence                 122345566666554221112222 22 2233445566777888999999765  33333333333322  1236


Q ss_pred             cEEEEecCChHHHhhc
Q 016120          322 SRVLITVTDPDLLASL  337 (394)
Q Consensus       322 s~IivTTR~~~v~~~~  337 (394)
                      ..||++|.+.+.+..+
T Consensus       192 ~tvi~vTHd~~~~~~~  207 (242)
T d1oxxk2         192 VTLLVVSHDPADIFAI  207 (242)
T ss_dssp             CEEEEEESCHHHHHHH
T ss_pred             CEEEEEECCHHHHHHh
Confidence            7799999987766555

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.84  E-value=0.0017  Score=57.28  Aligned_cols=89  Identities=11%  Similarity=0.025  Sum_probs=62.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILR  286 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~  286 (394)
                      .-++.-|.|.+|+||||||..++..  .+..=..++|++....+++.     +++.++.....---... +.++..+.+.
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~--aqk~g~~v~yiDtE~~~~~~-----~a~~~Gvd~d~i~~~~~~~~E~~~~~~~  128 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQ--AQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME  128 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CceEEEEecCCccchHHHHHHHHHH--HHhCCCEEEEEECCccCCHH-----HHHHhCCCchhEEEEcCCCHHHHHHHHH
Confidence            4568999999999999999888763  22222457899999888874     57777765432111223 6677777777


Q ss_pred             HHccC-CeEEEEEeCCCC
Q 016120          287 DYLTN-KKYFIVLDDVFD  303 (394)
Q Consensus       287 ~~l~~-kr~LlVlDdv~~  303 (394)
                      ..++. +.-|+|+|-+-.
T Consensus       129 ~l~~~~~~~liIiDSi~a  146 (268)
T d1xp8a1         129 LLVRSGAIDVVVVDSVAA  146 (268)
T ss_dssp             HHHTTTCCSEEEEECTTT
T ss_pred             HHHhcCCCcEEEEecccc
Confidence            66654 567999999854

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.82  E-value=0.0003  Score=56.06  Aligned_cols=22  Identities=9%  Similarity=0.291  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|.|+|++|+||||+|+.+..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999998865

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.80  E-value=0.00031  Score=56.84  Aligned_cols=22  Identities=14%  Similarity=0.125  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ++|.|.|++|+||||+|+.+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999976

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.74  E-value=0.00036  Score=56.81  Aligned_cols=35  Identities=3%  Similarity=-0.157  Sum_probs=25.8

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCccccc-ccCeeEEE
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKF-YFDCLAWV  245 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv  245 (394)
                      -.+|.|+|++|+||||+|+.+..  +... +++...++
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~--~L~~~~~~~~~~~   41 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQV--TLNQQGGRSVSLL   41 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH--HHHHHCSSCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH--HHhhcCCCchhhh
Confidence            46888999999999999999987  4433 23444444

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.74  E-value=0.00058  Score=59.77  Aligned_cols=39  Identities=15%  Similarity=0.239  Sum_probs=28.4

Q ss_pred             ccHHHHHHHHhcC---CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          193 RGREELFDLLIEG---PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       193 ~~~~~i~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+.+.++.+..+   ...++.|.++|++|+||||||+.+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          13 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3444445555443   23456788999999999999999998

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.68  E-value=0.00034  Score=56.67  Aligned_cols=22  Identities=14%  Similarity=0.253  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..|.|.|++|+||||+|+.+..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999999986

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.65  E-value=0.0029  Score=55.24  Aligned_cols=23  Identities=22%  Similarity=0.187  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -..++|+|+.|+|||||++.+..
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            35899999999999999999964

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.0028  Score=53.60  Aligned_cols=58  Identities=10%  Similarity=0.009  Sum_probs=36.7

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCH--HHHHHHHHHHhCCC
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDF--GKMLDDIIKSVMPP  267 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~i~~~i~~~l~~~  267 (394)
                      ....|+.++|+.|+||||-+..+..  +.+ .....+.+-....+..  .+-++...+.++.+
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~--~~~-~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~   66 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLAR--QFE-QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP   66 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHH--HHH-TTTCCEEEECCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH--HHH-HCCCcEEEEecccccccchhhhhhhhhhcCCc
Confidence            4578999999999999986655555  232 1234455555555554  44455666666554

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.0023  Score=56.14  Aligned_cols=89  Identities=15%  Similarity=-0.014  Sum_probs=60.1

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILR  286 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~  286 (394)
                      .-+++-|+|.+|+||||||..++..  .+..=..++|++....++...     ++.++.....---... +.++..+.+.
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~--~q~~g~~~vyidtE~~~~~~~-----a~~~Gvd~d~v~~~~~~~~E~~~~~i~  125 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD  125 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHH--HHcCCCEEEEEccccccCHHH-----HHHhCCCHHHEEEecCCCHHHHHHHHH
Confidence            3468899999999999999888873  333334678999888888643     5666665321111122 5566666666


Q ss_pred             HHcc-CCeEEEEEeCCCC
Q 016120          287 DYLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       287 ~~l~-~kr~LlVlDdv~~  303 (394)
                      ...+ ++.-|+|+|-+-.
T Consensus       126 ~l~~~~~~~liViDSi~a  143 (263)
T d1u94a1         126 ALARSGAVDVIVVDSVAA  143 (263)
T ss_dssp             HHHHHTCCSEEEEECGGG
T ss_pred             HHHhcCCCCEEEEECccc
Confidence            6554 4556899999853

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00039  Score=57.65  Aligned_cols=35  Identities=14%  Similarity=-0.163  Sum_probs=25.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV  245 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv  245 (394)
                      -.+|.++|++|+||||+|+.+..  +....+....++
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~--~l~~~~~~~~~~   53 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE--YLVCHGIPCYTL   53 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH--HHHHTTCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH--HHHhcCCCccch
Confidence            45778999999999999999987  444434333343

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.56  E-value=0.0041  Score=54.31  Aligned_cols=23  Identities=30%  Similarity=0.286  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|+|||||++.+..
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHc
Confidence            35899999999999999999965

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0078  Score=52.27  Aligned_cols=23  Identities=26%  Similarity=0.232  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -..++|+|+.|+|||||++.+..
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            35899999999999999999964

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.53  E-value=0.00056  Score=55.48  Aligned_cols=23  Identities=9%  Similarity=-0.009  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++|.|.|.+|+||||+|+.+..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999987

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00044  Score=56.47  Aligned_cols=23  Identities=17%  Similarity=0.174  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +.|.|+|++|+|||||++.+...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            46889999999999999999863

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.52  E-value=0.00046  Score=56.10  Aligned_cols=20  Identities=10%  Similarity=0.137  Sum_probs=17.8

Q ss_pred             EEEEcCCCccHHHHHHHHhc
Q 016120          212 VAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~  231 (394)
                      |.++||+|+||||+++.++.
T Consensus         4 IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45669999999999999987

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00072  Score=54.72  Aligned_cols=25  Identities=12%  Similarity=0.247  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhc
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...+++.|.|++|+||||+|+.+..
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3568899999999999999999987

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.50  E-value=0.00069  Score=56.43  Aligned_cols=24  Identities=25%  Similarity=0.209  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+.+|.|+|++|+||||+|+.++.
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999999987

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.49  E-value=0.00065  Score=55.12  Aligned_cols=24  Identities=17%  Similarity=0.050  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ....|.|.|++|+||||+|+.+..
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            455788999999999999999987

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.46  E-value=0.00081  Score=54.56  Aligned_cols=23  Identities=13%  Similarity=0.150  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -++|.|.|++|+||||+|+.+..
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999977

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.46  E-value=0.0007  Score=56.82  Aligned_cols=23  Identities=9%  Similarity=0.114  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +.+|.++|.+|+||||+|+.++.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999999986

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.00089  Score=55.88  Aligned_cols=25  Identities=16%  Similarity=0.227  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhc
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +..++|.|.|++|+||||+|+.++.
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999999987

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.42  E-value=0.0013  Score=57.21  Aligned_cols=23  Identities=17%  Similarity=0.112  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -..++|+|+.|+|||||++.+..
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999963

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0065  Score=52.43  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..++|+|..|+|||||++.+..
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5889999999999999999965

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.37  E-value=0.0039  Score=52.35  Aligned_cols=22  Identities=23%  Similarity=0.280  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|+|||||.+.++.
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            4889999999999999999975

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.32  E-value=0.00066  Score=55.04  Aligned_cols=20  Identities=10%  Similarity=0.177  Sum_probs=18.5

Q ss_pred             EEEEcCCCccHHHHHHHHhc
Q 016120          212 VAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~  231 (394)
                      |.|+||+|+||||+++.++.
T Consensus         3 I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999999988

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.32  E-value=0.00083  Score=54.90  Aligned_cols=22  Identities=18%  Similarity=0.219  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ++|+|.|+.|+||||+++.+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999976

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.29  E-value=0.013  Score=51.64  Aligned_cols=23  Identities=26%  Similarity=0.180  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -.+++|+|+.|+|||||++.+..
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhC
Confidence            35899999999999999999975

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.21  E-value=0.001  Score=53.87  Aligned_cols=22  Identities=14%  Similarity=0.034  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ++++|+|..|+|||||+.++..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            5899999999999999999987

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.21  E-value=0.00082  Score=60.71  Aligned_cols=45  Identities=11%  Similarity=0.042  Sum_probs=34.0

Q ss_pred             ccceecccHHHHHHHHhc----C--------CCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLIE----G--------PSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~----~--------~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++|.++.++.+...+..    .        +...+.+.++|++|+|||.||+.+++
T Consensus        15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhh
Confidence            578999888888765521    0        11345667899999999999999987

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.20  E-value=0.0098  Score=51.70  Aligned_cols=22  Identities=18%  Similarity=0.226  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|.|||||++.+..
T Consensus        31 ei~~liG~nGaGKSTLl~~i~G   52 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITG   52 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHC
Confidence            4889999999999999999975

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.15  E-value=0.00079  Score=54.93  Aligned_cols=21  Identities=10%  Similarity=0.148  Sum_probs=18.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .|.++|++|+||||+|+.++.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            356889999999999999987

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.14  E-value=0.0012  Score=53.84  Aligned_cols=20  Identities=20%  Similarity=0.326  Sum_probs=18.8

Q ss_pred             EEEEcCCCccHHHHHHHHhc
Q 016120          212 VAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~  231 (394)
                      |.|+|++|+|||||++.+..
T Consensus         3 i~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHh
Confidence            78999999999999999986

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.11  E-value=0.0063  Score=53.44  Aligned_cols=105  Identities=19%  Similarity=0.259  Sum_probs=62.7

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCC-HHHHHHHHHHHhCCCCCC--c--
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYD-FGKMLDDIIKSVMPPSRV--S--  271 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~--~--  271 (394)
                      +.++.|..-..+- .++|.|.+|+|||+|+..+.++. .+.+=++++++-+.+... ..++..++.+.--.....  .  
T Consensus        57 raID~l~pigkGQ-r~~If~~~g~GKt~l~~~i~~~~-~~~~~~v~V~~~iGer~~ev~~~~~~~~~~~~~~~~~~~~~t  134 (276)
T d2jdid3          57 KVVDLLAPYAKGG-KIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV  134 (276)
T ss_dssp             HHHHHHSCEETTC-EEEEEECTTSSHHHHHHHHHHHH-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred             eeeeeeccccCCC-EEEeeCCCCCCHHHHHHHHHHHH-HhhCCCeEEEEEeccChHHHHHHHHHHHhcCccccccccceE
Confidence            5666665543333 47899999999999999887631 233345678888887653 566667766642111000  0  


Q ss_pred             ----cccCc------CHHHHHHHHHHHcc---CCeEEEEEeCCCC
Q 016120          272 ----VIIGE------DYQLKKSILRDYLT---NKKYFIVLDDVFD  303 (394)
Q Consensus       272 ----~~~~~------~~~~~~~~l~~~l~---~kr~LlVlDdv~~  303 (394)
                          ...++      -.....-.+.+++.   |+..|+++||+..
T Consensus       135 vvv~~~s~~~~~~r~~~~~~a~~iAEyf~~~~G~~VLv~~Dsltr  179 (276)
T d2jdid3         135 ALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR  179 (276)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEcchhH
Confidence                00111      11222334556653   7899999999854

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0027  Score=54.59  Aligned_cols=126  Identities=10%  Similarity=0.131  Sum_probs=66.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCccccc----------ccC------eeEEEEeCC-----------------CCCHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKF----------YFD------CLAWVRVSI-----------------AYDFGKM  256 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------~F~------~~~wv~vs~-----------------~~~~~~i  256 (394)
                      .+++|+|+.|.|||||.+.+..-.....          .+.      ...++....                 .....+.
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  105 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTEL  105 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHhhhccchhhHHHH
Confidence            4899999999999999998864211000          000      011221111                 1122445


Q ss_pred             HHHHHHHhCCCCCCccccCc-CHHH--HHHHHHHHcc------CCeEEEEEeCCCC--Cchh---HHHHHhhCCCCCCCc
Q 016120          257 LDDIIKSVMPPSRVSVIIGE-DYQL--KKSILRDYLT------NKKYFIVLDDVFD--NSEI---WSDLEELLPDDENGS  322 (394)
Q Consensus       257 ~~~i~~~l~~~~~~~~~~~~-~~~~--~~~~l~~~l~------~kr~LlVlDdv~~--~~~~---~~~l~~~l~~~~~gs  322 (394)
                      ..+++..++........... +-.+  .....+..++      ..+=+|+||.--.  |...   +..+...+.  ..|.
T Consensus       106 ~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~--~~g~  183 (231)
T d1l7vc_         106 LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC--QQGL  183 (231)
T ss_dssp             HHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHH--HTTC
T ss_pred             HHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH--hCCC
Confidence            66777777665443333333 3333  3333333332      2447999999876  3322   222233332  3477


Q ss_pred             EEEEecCChHHHhhc
Q 016120          323 RVLITVTDPDLLASL  337 (394)
Q Consensus       323 ~IivTTR~~~v~~~~  337 (394)
                      .||++|.+-+.+..+
T Consensus       184 tii~vtHdl~~~~~~  198 (231)
T d1l7vc_         184 AIVMSSHDLNHTLRH  198 (231)
T ss_dssp             EEEECCCCHHHHHHH
T ss_pred             EEEEEeCCHHHHHHH
Confidence            799999986554444

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.08  E-value=0.0055  Score=53.37  Aligned_cols=23  Identities=22%  Similarity=0.075  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -..++|+|..|+|||||++.+..
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHh
Confidence            35889999999999999998853

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.03  E-value=0.0022  Score=52.42  Aligned_cols=22  Identities=14%  Similarity=0.170  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ++|.|.|++|+||||+++.+..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999999987

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.98  E-value=0.015  Score=48.85  Aligned_cols=58  Identities=17%  Similarity=0.047  Sum_probs=35.2

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI-AYDFGKMLDDIIKSVMPP  267 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~  267 (394)
                      +.+++.++|+.|+||||.+..++..  .+.+=..+..++... .....+-++...+.++.+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~--~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~   63 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRY--YQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIP   63 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEEeccccccchhhHhhcccccCce
Confidence            5679999999999999866556552  222212345554432 334555556666665543

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0018  Score=53.72  Aligned_cols=22  Identities=27%  Similarity=0.244  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|.|.|++|+||||+|+.+++
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999987

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.91  E-value=0.006  Score=52.11  Aligned_cols=91  Identities=10%  Similarity=-0.009  Sum_probs=55.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------ccccCc-
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRV----------SVIIGE-  276 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~----------~~~~~~-  276 (394)
                      .-.++.|.|.+|+|||++|.++..  ....+...++|++....  ...+.. .+...+.....          ...... 
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~--~~~~~~~~~~~is~e~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVE--NACANKERAILFAYEES--RAQLLR-NAYSWGMDFEEMERQNLLKIVCAYPESA   99 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEESSSC--HHHHHH-HHHTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH--HHHHhccccceeeccCC--HHHHHH-HHHHcCCChHHHhhcCceEEEEeecchh
Confidence            456888999999999999999887  45555667788876543  333322 23333221110          000112 


Q ss_pred             CHHHHHHHHHHHcc-CCeEEEEEeCCCC
Q 016120          277 DYQLKKSILRDYLT-NKKYFIVLDDVFD  303 (394)
Q Consensus       277 ~~~~~~~~l~~~l~-~kr~LlVlDdv~~  303 (394)
                      ........+...+. .+.-++|+|.+..
T Consensus       100 ~~~~~~~~i~~~i~~~~~~~vviDs~~~  127 (242)
T d1tf7a2         100 GLEDHLQIIKSEINDFKPARIAIDSLSA  127 (242)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEECHHH
T ss_pred             hHHHHHHHHHHHHHhcCCceeeeecchh
Confidence            56666666766664 4667889998643

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.90  E-value=0.0014  Score=56.74  Aligned_cols=22  Identities=18%  Similarity=0.299  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+++|+|+.|.|||||.+.+..
T Consensus        33 ei~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            4899999999999999999965

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.90  E-value=0.01  Score=49.97  Aligned_cols=24  Identities=17%  Similarity=0.026  Sum_probs=19.5

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +.+|+.++|+.|+||||.+..+..
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999986666654

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.0018  Score=54.66  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++|+|-|++|+||||+|+.+.+
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999999999988

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0022  Score=54.15  Aligned_cols=23  Identities=9%  Similarity=0.101  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +-+|+|.|..|+||||+|+.+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998876

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.71  E-value=0.013  Score=49.34  Aligned_cols=58  Identities=10%  Similarity=-0.107  Sum_probs=32.6

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCC-CCCHHHHHHHHHHHhCC
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSI-AYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~i~~~i~~~l~~  266 (394)
                      ....++.++|+.|+||||-+..++..  ...+=..+..++... .....+-++...+.++.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~--~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i   67 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKM--FVDEGKSVVLAAADTFRAAAIEQLKIWGERVGA   67 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH--HHHCCCceEEEeecccccchhHHHHHHhhhcCc
Confidence            45779999999999999765555542  222213344444332 22233445555555544

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.70  E-value=0.0028  Score=52.36  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +.++| |+|++|+||||+|+.+..
T Consensus         3 ~~rii-l~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           3 GVRAV-LLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCEEE-EECCTTSSHHHHHHHHHH
T ss_pred             ccEEE-EECCCCCCHHHHHHHHHH
Confidence            45666 789999999999999986

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.61  E-value=0.013  Score=49.40  Aligned_cols=25  Identities=12%  Similarity=0.050  Sum_probs=16.2

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhc
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ....|+.++|+.|+||||.+..++.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999976555544

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.60  E-value=0.0034  Score=51.86  Aligned_cols=24  Identities=17%  Similarity=0.135  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+-+|+|.|+.|+||||+|..+-.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998743

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.56  E-value=0.0026  Score=52.55  Aligned_cols=22  Identities=14%  Similarity=-0.089  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..|.|.|++|+||||+|+.+.+
T Consensus         4 m~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4577999999999999999977

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.55  E-value=0.0027  Score=51.80  Aligned_cols=20  Identities=10%  Similarity=0.150  Sum_probs=18.5

Q ss_pred             EEEEcCCCccHHHHHHHHhc
Q 016120          212 VAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~  231 (394)
                      |.|.|++|+||||+|+.+..
T Consensus         3 I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999999977

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.47  E-value=0.0032  Score=53.24  Aligned_cols=22  Identities=14%  Similarity=0.028  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -+|+|-|++|+||||+|+.+..
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999987

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.44  E-value=0.0036  Score=54.77  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +.|+|+|-||+||||+|..+..
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~   23 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTS   23 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH
Confidence            6789999999999999988765

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.41  E-value=0.0043  Score=51.43  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +.-.|.|.|++|+||||+|+.+..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            344566889999999999999987

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0064  Score=54.97  Aligned_cols=36  Identities=14%  Similarity=0.162  Sum_probs=29.1

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++++.+.....+..+|+|.|.+|+|||||...+..
T Consensus        41 ~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          41 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             HHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            456666655556789999999999999999988865

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.36  E-value=0.0034  Score=51.37  Aligned_cols=21  Identities=19%  Similarity=0.167  Sum_probs=18.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .|.|.|++|+||||+|+.++.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367889999999999999987

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.35  E-value=0.0039  Score=51.73  Aligned_cols=23  Identities=9%  Similarity=0.141  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++|.|.|++|+||||+|+.+..
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999987

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.31  E-value=0.0036  Score=51.28  Aligned_cols=21  Identities=10%  Similarity=0.131  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .|.|.|++|+||||+|+.++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999999987

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.28  E-value=0.0035  Score=51.78  Aligned_cols=21  Identities=19%  Similarity=0.311  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -|.|+|++|+|||||++.+.+
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            367999999999999999977

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.24  E-value=0.0043  Score=50.92  Aligned_cols=22  Identities=18%  Similarity=0.141  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ++|.|+|++|+|||||++.+..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4788999999999999999876

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.20  E-value=0.0032  Score=52.26  Aligned_cols=20  Identities=20%  Similarity=0.356  Sum_probs=18.4

Q ss_pred             EEEEcCCCccHHHHHHHHhc
Q 016120          212 VAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~  231 (394)
                      |.|+|++|+|||||++.+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66999999999999999876

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.016  Score=51.81  Aligned_cols=25  Identities=12%  Similarity=-0.008  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhc
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+-+|+|.|.+|+||||+|+.+..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            3567999999999999999999876

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.17  E-value=0.0072  Score=54.55  Aligned_cols=38  Identities=16%  Similarity=0.164  Sum_probs=30.2

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...++++.+.....+..+|+|.|++|+|||||.-.+..
T Consensus        36 ~~~~~~~~~~~~~~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          36 AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccCCceEEeeeCCCCCCHHHHHHHHHH
Confidence            34556666666566789999999999999999988765

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.17  E-value=0.021  Score=51.14  Aligned_cols=25  Identities=12%  Similarity=0.070  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccc
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVK  236 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~  236 (394)
                      .++.++|++|+|||.||+.+..  +..
T Consensus       124 g~~l~~G~pG~GKT~la~ala~--~~~  148 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGE--ALG  148 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHH--HHH
T ss_pred             ceEEEECCCCccHHHHHHHHHH--Hhc
Confidence            4566789999999999999998  554

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.15  E-value=0.015  Score=49.12  Aligned_cols=48  Identities=2%  Similarity=-0.063  Sum_probs=33.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccc----cCeeEEEEeCCCCCHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFY----FDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~  255 (394)
                      .-+++-|.|.+|+||||||..+.........    -...+|++....+....
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   84 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVR   84 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHH
Confidence            3568889999999999999888764322222    24677888777665433

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.0096  Score=52.05  Aligned_cols=36  Identities=17%  Similarity=0.247  Sum_probs=27.2

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ++..+.+.+..  ++.++|.+.|-||+||||+|..+..
T Consensus         7 ~~~~~~~~~~~--~~~~iii~sGKGGVGKTT~a~nLA~   42 (279)
T d1ihua2           7 SLSALVDDIAR--NEHGLIMLMGKGGVGKTTMAAAIAV   42 (279)
T ss_dssp             CHHHHHHHHHT--TSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cHHHHHHHhhc--CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45566666664  3578999999999999998766654

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.09  E-value=0.0062  Score=51.35  Aligned_cols=24  Identities=8%  Similarity=-0.002  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +..+|-+.|++|+||||||+.+..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999999976

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.04  E-value=0.0065  Score=55.78  Aligned_cols=43  Identities=7%  Similarity=0.001  Sum_probs=30.6

Q ss_pred             ceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          189 NEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       189 ~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .|.+...-+..+.+..+.+..+.+.++|++|+|||++|..+++
T Consensus       134 ~~~~~~i~~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         134 PKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHH
Confidence            3333333344444444555667889999999999999999998

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.0054  Score=50.34  Aligned_cols=22  Identities=9%  Similarity=0.243  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +.|.|+|++|+|||||++.+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999999886

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.99  E-value=0.0042  Score=54.97  Aligned_cols=101  Identities=16%  Similarity=0.094  Sum_probs=52.7

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEE-EeCCCCCHHHHHHHHHHHhCCCCCCccccC
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWV-RVSIAYDFGKMLDDIIKSVMPPSRVSVIIG  275 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv-~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~  275 (394)
                      ++++.|..=..+ ..++|.|..|+|||+|+..+.++.. .++-.+++.+ .+.+....   ..++.......-- ....+
T Consensus        32 r~ID~l~PigrG-Qr~~I~g~~g~GKT~l~~~i~~~~~-~~~~~~v~~~~~iger~~e---v~~~~~~~~~~vv-~~t~d  105 (289)
T d1xpua3          32 RVLDLASPIGRG-QRGLIVAPPKAGKTMLLQNIAQSIA-YNHPDCVLMVLLIDERPEE---VTEMQRLVKGEVV-ASTFD  105 (289)
T ss_dssp             HHHHHHSCCBTT-CEEEEEECSSSSHHHHHHHHHHHHH-HHCTTSEEEEEEEEECHHH---HHHHHHHCSSEEE-EEETT
T ss_pred             eeeeecccccCC-CeeeEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEeeceeHHH---HHhHHhhcceEEE-eccCC
Confidence            577777664323 3568999999999999999987422 2233334433 23332221   1222222211000 00001


Q ss_pred             c------CHHHHHHHHHHHc--cCCeEEEEEeCCCC
Q 016120          276 E------DYQLKKSILRDYL--TNKKYFIVLDDVFD  303 (394)
Q Consensus       276 ~------~~~~~~~~l~~~l--~~kr~LlVlDdv~~  303 (394)
                      .      -.....-.+.+++  +|+..||++||+..
T Consensus       106 ~~~~~r~~~~~~a~~iAEyfrd~G~dVLli~Dsltr  141 (289)
T d1xpua3         106 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR  141 (289)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEESCHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhccCceeecCcHHH
Confidence            1      1122334445555  47899999999743

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.99  E-value=0.0063  Score=50.27  Aligned_cols=25  Identities=20%  Similarity=0.108  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhc
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+..+|+|-|..|+||||+++.+..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998876

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.98  E-value=0.0055  Score=55.44  Aligned_cols=42  Identities=17%  Similarity=0.147  Sum_probs=30.6

Q ss_pred             ccceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHh
Q 016120          187 DINEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTY  230 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~  230 (394)
                      +++|.+..+..+.-.....  +..-+.+.|.+|+||||||+.+.
T Consensus         8 ~I~Gq~~~kral~laa~~~--~~h~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_           8 AIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             GSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHhcc--CCCeEEEECCCCccHHHHHHHHH
Confidence            8899987776554333321  12346799999999999999875

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.97  E-value=0.0052  Score=50.25  Aligned_cols=20  Identities=10%  Similarity=0.220  Sum_probs=17.9

Q ss_pred             EEEEcCCCccHHHHHHHHhc
Q 016120          212 VAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~  231 (394)
                      |.|.|++|+||||+|+.+..
T Consensus         5 Ivl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45779999999999999987

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.0053  Score=50.05  Aligned_cols=20  Identities=10%  Similarity=0.014  Sum_probs=18.4

Q ss_pred             EEEEcCCCccHHHHHHHHhc
Q 016120          212 VAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~  231 (394)
                      |.|.|++|+||||+|+.++.
T Consensus         3 I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999987

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=94.88  E-value=0.019  Score=50.31  Aligned_cols=100  Identities=12%  Similarity=0.132  Sum_probs=54.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCC-HHHHHHHHHHHhCCCCCC------cccc-Cc-CHHHH
Q 016120          211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYD-FGKMLDDIIKSVMPPSRV------SVII-GE-DYQLK  281 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~~------~~~~-~~-~~~~~  281 (394)
                      .++|.|..|+|||+|+......  ...+-..++++-+..... ..++..++...-......      .+.. .. -....
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~--~~~~~~v~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~tsd~p~~~r~~a~~~  146 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILN--QQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYT  146 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHT--CCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHH
T ss_pred             eEeeccCCCCChHHHHHHHHhh--hcccCceeeeeeecchhHHHHHHHHhhccCCcceeeeecccccCccHHHHHHHHHH
Confidence            3678999999999999876542  334445778887777543 223333322210000000      0000 11 12234


Q ss_pred             HHHHHHHc--cCCeEEEEEeCCCCCchhHHHHH
Q 016120          282 KSILRDYL--TNKKYFIVLDDVFDNSEIWSDLE  312 (394)
Q Consensus       282 ~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~l~  312 (394)
                      .-.+.+++  ++++.|+++||+......+.++.
T Consensus       147 a~tiAEyfrd~G~~Vlll~Dsltr~A~A~rEis  179 (276)
T d1fx0a3         147 GAALAEYFMYRERHTLIIYDDLSKQAQAYRQMS  179 (276)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCceeEEeeccHHHHHHHHHHH
Confidence            44555555  57999999999855233444444

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.86  E-value=0.033  Score=47.35  Aligned_cols=49  Identities=10%  Similarity=0.139  Sum_probs=34.5

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccc----cccCeeEEEEeCCCCCHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVK----FYFDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~i  256 (394)
                      .-.++.|.|.+|+||||+|.++..+....    ......+|+......+....
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI   87 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHH
Confidence            45688999999999999998876532211    12356778887777765544

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.71  E-value=0.0077  Score=53.18  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+.|+|.|-||+||||+|..+..
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~   24 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVA   24 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            36788999999999998887755

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.70  E-value=0.012  Score=47.52  Aligned_cols=34  Identities=15%  Similarity=0.151  Sum_probs=24.5

Q ss_pred             HHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          199 FDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       199 ~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ++.+....+..--|.++|.+|+|||||...+.+.
T Consensus         6 ~~k~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_           6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             HHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             HHHhhCCCCCEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3444444334445779999999999999998764

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.015  Score=51.11  Aligned_cols=24  Identities=17%  Similarity=0.057  Sum_probs=20.0

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..+++.+.|-||+||||+|..+..
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~   30 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAI   30 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHHHH
Confidence            367888999999999998877754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.36  E-value=0.0085  Score=47.18  Aligned_cols=21  Identities=10%  Similarity=0.014  Sum_probs=18.6

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.|+|.+|+|||||...+..+
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            569999999999999998764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.31  E-value=0.02  Score=50.43  Aligned_cols=84  Identities=13%  Similarity=0.121  Sum_probs=45.2

Q ss_pred             CCCceEEEEEcCCCccHHHHHHHHhcCcccccc--cC-eeEEEEeCCCCCHHHHHHHHHHHhCCCC-CCcccc-Cc-CHH
Q 016120          206 PSGLAVVAILDSSGFDKTVFTADTYNNDHVKFY--FD-CLAWVRVSIAYDFGKMLDDIIKSVMPPS-RVSVII-GE-DYQ  279 (394)
Q Consensus       206 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F~-~~~wv~vs~~~~~~~i~~~i~~~l~~~~-~~~~~~-~~-~~~  279 (394)
                      +..+-+|+|.|..|+||||||..+..  .....  +. .+.-++...=+-...-...+.+...... ....+. +. +..
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~--~L~~~~~~~~~v~~iS~DdfY~t~~~r~~L~~~~~~~pl~~~RG~PgThD~~  101 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYN--HLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMK  101 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH--HHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHH--HHHHHhCCCcceEeeccCCCCCCHHHHHHHhhhccccccceecCCCcchhHH
Confidence            44567999999999999999988866  33222  22 2334444332222222334444432110 000111 33 777


Q ss_pred             HHHHHHHHHccC
Q 016120          280 LKKSILRDYLTN  291 (394)
Q Consensus       280 ~~~~~l~~~l~~  291 (394)
                      .+.+.+....++
T Consensus       102 ll~~~l~~l~~~  113 (286)
T d1odfa_         102 LLQEVLNTIFNN  113 (286)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhh
Confidence            777777777654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.28  E-value=0.011  Score=46.91  Aligned_cols=22  Identities=23%  Similarity=0.137  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|+|+|.+|+|||||...+.++
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3679999999999999988775

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=94.19  E-value=0.011  Score=50.19  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ||+|+|+.|+|||||...+.+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            789999999999999988875

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.065  Score=45.30  Aligned_cols=49  Identities=6%  Similarity=0.062  Sum_probs=35.1

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhcCcc----cccccCeeEEEEeCCCCCHHH
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYNNDH----VKFYFDCLAWVRVSIAYDFGK  255 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~----~~~~F~~~~wv~vs~~~~~~~  255 (394)
                      +.-.++.|.|.+|+|||++|.++..+..    ....+..+.|+.....+....
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDR   87 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHH
Confidence            3456999999999999999988865321    223456778888777766443

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.13  E-value=0.011  Score=49.50  Aligned_cols=22  Identities=14%  Similarity=0.188  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++.|+|++|+|||||.+.+..
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4778999999999999999876

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.12  E-value=0.018  Score=46.31  Aligned_cols=34  Identities=12%  Similarity=0.038  Sum_probs=24.5

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +.+.+..... ..-|.++|.+|+|||||...+...
T Consensus         3 ~~~~~~~~~k-~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_           3 VLQFLGLYKK-TGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             HHHHHTCTTC-CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             hHHhccccCC-CCEEEEECCCCCCHHHHHHHHhCC
Confidence            3444544433 345679999999999999988664

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.08  E-value=0.015  Score=47.76  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCccHHHHHHHHhc
Q 016120          207 SGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       207 ~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+.+.|+|+|.+|+|||||...+.+
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcC
Confidence            3567899999999999999999986

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.98  E-value=0.018  Score=48.63  Aligned_cols=37  Identities=16%  Similarity=0.099  Sum_probs=26.6

Q ss_pred             eEEEEE-cCCCccHHHHHHHHhcCcccccccCeeEEEEeC
Q 016120          210 AVVAIL-DSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVS  248 (394)
Q Consensus       210 ~vi~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs  248 (394)
                      ++|+|+ |-||+||||+|..+..  ...+.-..+..|...
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~--~la~~g~~VlliD~D   39 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGV--ALAQLGHDVTIVDAD   39 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred             EEEEEECCCCCChHHHHHHHHHH--HHHhCCCCEEEEeCC
Confidence            688888 6799999999998876  333333356677554

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.86  E-value=0.017  Score=46.13  Aligned_cols=21  Identities=5%  Similarity=0.188  Sum_probs=18.3

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.++|.+|+|||||...+.++
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568999999999999887754

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.84  E-value=0.015  Score=46.41  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|.+|+|||+|...+.++
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999988764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.77  E-value=0.0093  Score=52.68  Aligned_cols=24  Identities=13%  Similarity=0.169  Sum_probs=18.3

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +.++|+|.|.+|+||||+|+.+.+
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHH
Confidence            356999999999999999998766

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.017  Score=49.23  Aligned_cols=24  Identities=17%  Similarity=0.149  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +++.|+|-|+-|+||||+++.+..
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            367899999999999999999986

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.016  Score=46.74  Aligned_cols=22  Identities=14%  Similarity=0.246  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|.+|+|||+|+..+.++
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3678999999999999988765

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.58  E-value=0.017  Score=48.29  Aligned_cols=20  Identities=20%  Similarity=0.225  Sum_probs=18.3

Q ss_pred             EEEEEcCCCccHHHHHHHHh
Q 016120          211 VVAILDSSGFDKTVFTADTY  230 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~  230 (394)
                      +|+|+|+.|+||||+|+.+-
T Consensus         5 iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            89999999999999998764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.013  Score=49.70  Aligned_cols=24  Identities=13%  Similarity=0.079  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .+.|+|-|+-|+||||+|+.+...
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999998873

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.022  Score=45.65  Aligned_cols=21  Identities=19%  Similarity=0.341  Sum_probs=18.4

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.++|.+|+|||||...+.++
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            578999999999999888764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.53  E-value=0.02  Score=46.48  Aligned_cols=35  Identities=26%  Similarity=0.254  Sum_probs=24.6

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .+.+.|.......+ |.++|.+|+|||||...+.+.
T Consensus         6 ~~~~~l~~~~k~~K-I~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_           6 SMFDKLWGSNKELR-ILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             HHHGGGTTCSSCEE-EEEEEETTSSHHHHHHHTCCS
T ss_pred             HHHHHHhCCCceEE-EEEECCCCCCHHHHHHHHhcC
Confidence            34444444444455 559999999999999998654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=93.50  E-value=0.019  Score=45.66  Aligned_cols=22  Identities=14%  Similarity=0.078  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.|+|.+|+|||||...+.+.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            3669999999999999998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.49  E-value=0.018  Score=45.79  Aligned_cols=21  Identities=14%  Similarity=0.205  Sum_probs=18.6

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.++|.+|+|||+|...+.++
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999988764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.39  E-value=0.022  Score=52.17  Aligned_cols=45  Identities=11%  Similarity=0.099  Sum_probs=33.2

Q ss_pred             ccceecccHHHHHHHHh----------------------------cCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          187 DINEFERGREELFDLLI----------------------------EGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       187 ~~~Gr~~~~~~i~~~L~----------------------------~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++|.++.++.+-..+.                            ..+.....+..+|+.|||||.||+.+..
T Consensus        18 ~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          18 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             eecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHh
Confidence            67888888777655441                            1123456688899999999999998875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.35  E-value=0.023  Score=45.44  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=18.6

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.|+|.+|+|||+|...+.++
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            668999999999999988764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.022  Score=46.42  Aligned_cols=22  Identities=32%  Similarity=0.347  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.|+|.+|+|||||+..+.++
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3678999999999999988764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.29  E-value=0.024  Score=45.25  Aligned_cols=22  Identities=14%  Similarity=0.188  Sum_probs=18.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.|+|.+|+|||+|+..+.++
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999888754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.26  E-value=0.02  Score=45.88  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|.+|+|||||...+.++
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3679999999999999988654

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=93.26  E-value=0.021  Score=47.57  Aligned_cols=21  Identities=19%  Similarity=0.126  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCccHHHHHHHHh
Q 016120          210 AVVAILDSSGFDKTVFTADTY  230 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~  230 (394)
                      -+|+|+|..|+||||+|+.+-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999774

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.022  Score=45.68  Aligned_cols=21  Identities=19%  Similarity=0.199  Sum_probs=18.6

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.++|.+|+|||+|++.+.+.
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            678999999999999988764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.025  Score=45.36  Aligned_cols=22  Identities=14%  Similarity=0.302  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|.+|+|||+|.+.+.++
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4679999999999999988764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.022  Score=45.53  Aligned_cols=22  Identities=23%  Similarity=0.229  Sum_probs=18.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.|+|.+|+|||+|...+.++
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999988654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.022  Score=46.83  Aligned_cols=49  Identities=4%  Similarity=-0.037  Sum_probs=31.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccc----cCeeEEEEeCCCCCHHHH
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFY----FDCLAWVRVSIAYDFGKM  256 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~i  256 (394)
                      .-.++.|.|.+|+|||+||..+..+......    +....++...........
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL   74 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHHHhhccccccceehhhhhhhhhHHHHH
Confidence            3458899999999999999888754222221    234456655555554433

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.027  Score=47.12  Aligned_cols=22  Identities=9%  Similarity=0.090  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..|+|-|+.|+||||+++.+.+
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4688899999999999999987

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.14  E-value=0.026  Score=45.35  Aligned_cols=25  Identities=12%  Similarity=0.171  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .+..|+|+|.+|+|||||...+.+.
T Consensus         4 ~~~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           4 YCGFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cccEEEEECCCCCCHHHHHHHHhCC
Confidence            3678999999999999999999863

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.026  Score=45.21  Aligned_cols=21  Identities=19%  Similarity=0.377  Sum_probs=18.5

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.++|.+|+|||+|...+.++
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            568999999999999988865

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.11  E-value=0.21  Score=42.28  Aligned_cols=110  Identities=14%  Similarity=0.069  Sum_probs=57.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCc---cc----------ccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCcccc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNND---HV----------KFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVII  274 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~---~~----------~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~  274 (394)
                      +.+++.|.|+...||||+.+.+.-..   +.          -..|+ .++..+...-++..-                 .
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d-~I~~~~~~~d~~~~~-----------------~  101 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPID-RIFTRVGAADDLASG-----------------R  101 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCC-EEEEEEC--------------------------
T ss_pred             CceEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccch-hheeEEccCcccccc-----------------h
Confidence            34688899999999999998885321   00          11222 233333332221110                 0


Q ss_pred             CcCHHHHHHHHHHHc--cCCeEEEEEeCCCC--CchhHHHH----HhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          275 GEDYQLKKSILRDYL--TNKKYFIVLDDVFD--NSEIWSDL----EELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       275 ~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~--~~~~~~~l----~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      + ....-..++...+  .+++.|+++|.+..  ++.+=..+    ...+. ...++.+++||....+....
T Consensus       102 S-~F~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~-~~~~~~~i~tTH~~~l~~~~  170 (234)
T d1wb9a2         102 S-TFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLA-NKIKALTLFATHYFELTQLP  170 (234)
T ss_dssp             ---CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHH-HTTCCEEEEECSCGGGGGHH
T ss_pred             h-HHHHHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhh-ccccceEEEecchHHHhhhh
Confidence            1 2222223334444  45789999999987  33322222    22221 13467899999987666544

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.08  E-value=0.025  Score=45.31  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .|+|+|.+|+|||||...+...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998753

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.027  Score=44.92  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|.+|+|||+|...+.++
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999888764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.04  E-value=0.027  Score=45.24  Aligned_cols=22  Identities=36%  Similarity=0.403  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|.+|+|||||...+.++
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4779999999999999988754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.027  Score=44.88  Aligned_cols=23  Identities=22%  Similarity=0.235  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .-|.|+|.+|+|||+|...+.++
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            45778999999999999987654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.024  Score=45.44  Aligned_cols=22  Identities=14%  Similarity=0.188  Sum_probs=18.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|.+|+|||+|...+.++
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999888754

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.00  E-value=0.024  Score=46.96  Aligned_cols=21  Identities=19%  Similarity=0.243  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .|+|-|.-|+||||+++.+..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999886

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.99  E-value=0.029  Score=45.27  Aligned_cols=24  Identities=17%  Similarity=0.217  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .+.|+|+|.+|+|||||...+.+.
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            568999999999999999999864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.025  Score=45.58  Aligned_cols=23  Identities=13%  Similarity=0.293  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      --|.|+|.+|+|||+|...+.++
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            35679999999999999888764

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.83  E-value=0.025  Score=46.67  Aligned_cols=23  Identities=13%  Similarity=0.065  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +.|+|+|.+|+|||||...+.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47889999999999999998764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.026  Score=45.36  Aligned_cols=22  Identities=9%  Similarity=0.214  Sum_probs=18.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|.+|+|||+|+..+..+
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3779999999999999887653

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=0.032  Score=44.53  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=18.5

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.++|.+|+|||+|...+.++
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            678999999999999988764

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.76  E-value=0.03  Score=45.98  Aligned_cols=22  Identities=14%  Similarity=0.285  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.|+|.+|+|||||...+.++
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            4679999999999999988764

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.74  E-value=0.11  Score=44.75  Aligned_cols=53  Identities=13%  Similarity=0.131  Sum_probs=32.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVM  265 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~  265 (394)
                      .++.|.|.+|+|||+++..+..+......+. +++++  -..+...+...++....
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~-v~~~s--~E~~~~~~~~r~~~~~~   88 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKK-VGLAM--LEESVEETAEDLIGLHN   88 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTSCCC-EEEEE--SSSCHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhhhhhcccc-eeEee--eccchhhHHhHHHHHhh
Confidence            4777899999999999988775322233333 33443  33455556555554443

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.032  Score=44.48  Aligned_cols=21  Identities=19%  Similarity=0.431  Sum_probs=18.7

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.++|.+|+|||+|...+.++
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999988764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.74  E-value=0.03  Score=44.63  Aligned_cols=22  Identities=14%  Similarity=0.311  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|.+|+|||||...+.++
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999988764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.032  Score=44.72  Aligned_cols=22  Identities=14%  Similarity=0.314  Sum_probs=18.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|.+|+|||+|...+.++
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4678999999999999887664

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.69  E-value=0.031  Score=47.06  Aligned_cols=36  Identities=19%  Similarity=0.074  Sum_probs=24.7

Q ss_pred             eEEEEE-cCCCccHHHHHHHHhcCcccccccCeeEEEEe
Q 016120          210 AVVAIL-DSSGFDKTVFTADTYNNDHVKFYFDCLAWVRV  247 (394)
Q Consensus       210 ~vi~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v  247 (394)
                      ++|+|+ +-||+||||+|..+...  ....-..++-+..
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~--la~~g~~VlliD~   39 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVA--LGDRGRKVLAVDG   39 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHH--HHHTTCCEEEEEC
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHH--HHhCCCCEEEEeC
Confidence            689999 55999999999888762  3223234455544

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.027  Score=45.35  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|..|+|||||+..+.++
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4779999999999999988664

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.63  E-value=0.094  Score=45.90  Aligned_cols=106  Identities=14%  Similarity=0.151  Sum_probs=53.8

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCccc-----cccc-CeeEEEEeCCCCC-HHHHHHHHHHHhCCCCC
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHV-----KFYF-DCLAWVRVSIAYD-FGKMLDDIIKSVMPPSR  269 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----~~~F-~~~~wv~vs~~~~-~~~i~~~i~~~l~~~~~  269 (394)
                      +.++.|..-..+ ..++|.|.+|+|||+|+..+.+....     ...- ..++++-+.+... ..++...+...-.....
T Consensus        57 raID~l~pig~G-Qr~~If~~~g~GKt~ll~~~~~~~~~~~~~~~~~~~~~~v~~~IGer~~E~~e~~~~~~~~~~~~~t  135 (285)
T d2jdia3          57 KAVDSLVPIGRG-QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT  135 (285)
T ss_dssp             HHHHHHSCCBTT-CBCEEEESTTSSHHHHHHHHHHHTHHHHTSSCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred             eEEecccCccCC-CEEEeecCCCCChHHHHHHHHHhHHhhccccccccceEEEEeeeCccHHHHHHHHHHhcccccccce
Confidence            456666553222 34578999999999998877653211     1111 1345666666554 34444444332111100


Q ss_pred             Cc--cccCc-C-----HHHHHHHHHHHc--cCCeEEEEEeCCCC
Q 016120          270 VS--VIIGE-D-----YQLKKSILRDYL--TNKKYFIVLDDVFD  303 (394)
Q Consensus       270 ~~--~~~~~-~-----~~~~~~~l~~~l--~~kr~LlVlDdv~~  303 (394)
                      .-  ...++ .     .....-.+.+++  +||..|+++||+..
T Consensus       136 vvv~~ts~~~~~~r~~~~~~a~tiAEyfrd~G~~VLll~Dsltr  179 (285)
T d2jdia3         136 IVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK  179 (285)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcChHH
Confidence            00  00011 1     111122344444  58999999999753

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.63  E-value=0.022  Score=46.10  Aligned_cols=20  Identities=15%  Similarity=0.162  Sum_probs=18.6

Q ss_pred             EEEEcCCCccHHHHHHHHhc
Q 016120          212 VAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~  231 (394)
                      |+|+|.+|+|||||...+.+
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            79999999999999999875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.60  E-value=0.031  Score=44.70  Aligned_cols=23  Identities=22%  Similarity=0.063  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .-|.|+|.+|+|||||...+..+
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45679999999999999988764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.55  E-value=0.028  Score=43.90  Aligned_cols=22  Identities=18%  Similarity=0.090  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|+++|.+|+|||||...+.+.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999888764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.46  E-value=0.031  Score=45.03  Aligned_cols=22  Identities=14%  Similarity=0.170  Sum_probs=18.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.|+|.+|+|||+|...+.++
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3578999999999999888764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.38  E-value=0.041  Score=43.95  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=18.9

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.|+|.+|+|||+|+..+.+.
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999887654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.38  E-value=0.033  Score=44.53  Aligned_cols=22  Identities=14%  Similarity=0.209  Sum_probs=18.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|..|+|||+|...+.++
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3568999999999999887654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.33  E-value=0.035  Score=45.97  Aligned_cols=23  Identities=13%  Similarity=0.099  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +.|+|+|.+|+|||||...+.+.
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999888764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.33  E-value=0.11  Score=43.53  Aligned_cols=58  Identities=9%  Similarity=-0.050  Sum_probs=35.9

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCccccc--------------ccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKF--------------YFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      .-.++.|.|.+|+|||++|..++.+.....              .-..+.|++.....+.. ....+...+..
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~~~~-~~~~~~~~~~~  104 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPE-RIMQMAEHAGI  104 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHH-HHHHHHHHHTC
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCCceEEeecccchhcCceEEEEEecCCcCHH-HHHHHHhhcch
Confidence            346889999999999999988875422211              11245678766555533 33444444433

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.32  E-value=0.032  Score=45.31  Aligned_cols=21  Identities=10%  Similarity=0.056  Sum_probs=17.9

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.++|.+|+|||+|.+.+..+
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            568999999999999887543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.29  E-value=0.034  Score=45.13  Aligned_cols=23  Identities=13%  Similarity=0.159  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      --|.|+|.+|+|||+|...+.++
T Consensus         6 iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35779999999999999887764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.26  E-value=0.077  Score=44.33  Aligned_cols=22  Identities=18%  Similarity=0.089  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ..|+|-|+-|+||||+++.+..
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHH
Confidence            5789999999999999999987

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.22  E-value=0.063  Score=45.33  Aligned_cols=34  Identities=24%  Similarity=0.274  Sum_probs=26.9

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .++.|.++|..     +...++|.+|+|||||...+..+
T Consensus        85 g~~~L~~~l~~-----kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          85 GIEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             THHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTT
T ss_pred             hHhhHHHHhcC-----CeEEEECCCCCCHHHHHHhhcch
Confidence            46777777732     36678999999999999999764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=92.19  E-value=0.041  Score=43.96  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .-|.++|.+|+|||+|...+.++
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            45779999999999999987654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.16  E-value=0.041  Score=44.78  Aligned_cols=22  Identities=14%  Similarity=0.200  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.|+|.+|+|||+|...+.++
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4789999999999999888764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.11  E-value=0.042  Score=43.95  Aligned_cols=22  Identities=14%  Similarity=0.406  Sum_probs=18.8

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|.+|+|||+|...+.++
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3568899999999999988764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.08  E-value=0.035  Score=45.40  Aligned_cols=19  Identities=16%  Similarity=0.272  Sum_probs=16.9

Q ss_pred             EEEEEcCCCccHHHHHHHH
Q 016120          211 VVAILDSSGFDKTVFTADT  229 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v  229 (394)
                      -|.++|.+|+|||+|...+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3568999999999999887

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.038  Score=44.40  Aligned_cols=21  Identities=14%  Similarity=0.218  Sum_probs=18.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -|.++|.+|+|||+|...+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            467999999999999988865

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.06  E-value=0.037  Score=44.88  Aligned_cols=21  Identities=38%  Similarity=0.453  Sum_probs=18.6

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.++|.+|+|||||+..+.+.
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=92.01  E-value=0.064  Score=42.90  Aligned_cols=33  Identities=9%  Similarity=0.103  Sum_probs=24.1

Q ss_pred             HHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          198 LFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       198 i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +++.+.+. ...+ |.++|.+|+|||||...+.++
T Consensus         3 ~~~~~~~~-k~~k-IvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_           3 VLSKIFGN-KEMR-ILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             HHHHHHTT-CCEE-EEEEEETTSSHHHHHHHTTCC
T ss_pred             hhhhhhCC-CeEE-EEEECCCCCCHHHHHHHHhcC
Confidence            34445443 3455 558999999999999999765

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.01  E-value=0.028  Score=45.58  Aligned_cols=21  Identities=10%  Similarity=0.105  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -|+|+|.+|+|||||...+.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999865

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=91.99  E-value=0.039  Score=43.79  Aligned_cols=21  Identities=14%  Similarity=0.105  Sum_probs=18.2

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.++|.+|+|||||...+..+
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            568999999999999988654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.95  E-value=0.045  Score=44.29  Aligned_cols=21  Identities=14%  Similarity=0.170  Sum_probs=18.4

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.++|..|+|||+|.+.+.++
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568999999999999888764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.89  E-value=0.039  Score=44.47  Aligned_cols=22  Identities=9%  Similarity=0.099  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .|+|+|.+|+|||||...+.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999864

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.85  E-value=0.089  Score=43.55  Aligned_cols=22  Identities=18%  Similarity=0.083  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +.|+|-|+.|+||||+++.+..
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999877

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=91.81  E-value=0.31  Score=36.86  Aligned_cols=53  Identities=11%  Similarity=-0.034  Sum_probs=33.4

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMP  266 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~  266 (394)
                      ..++..|+++-|.|||+++-.++..      ...++.+.+....-.......+.+....
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~------~~~~vli~~P~~~l~~q~~~~~~~~~~~   59 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAA------QGYKVLVLNPSVAATLGFGAYMSKAHGV   59 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHT------TTCCEEEEESCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHH------cCCcEEEEcChHHHHHHHHHHHHHHhhc
Confidence            4577788999999999988665542      2335666665544444445555554443

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.75  E-value=0.043  Score=44.21  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=18.6

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.++|.+|+|||+|...+.++
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            779999999999999988654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.73  E-value=0.029  Score=45.07  Aligned_cols=21  Identities=19%  Similarity=0.392  Sum_probs=17.3

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.++|.+|+|||+|...+.++
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999887654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.63  E-value=0.05  Score=45.93  Aligned_cols=25  Identities=24%  Similarity=0.231  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ..++..|.|.-|.|||||.+++...
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            4789999999999999999998764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.63  E-value=0.048  Score=43.72  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=18.7

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|.+|+|||||...+.++
T Consensus         8 KI~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999877653

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.61  E-value=0.046  Score=46.35  Aligned_cols=22  Identities=5%  Similarity=-0.068  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+|+|.|..|+||||+|+.+.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999865

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.59  E-value=0.085  Score=45.45  Aligned_cols=39  Identities=13%  Similarity=0.136  Sum_probs=29.7

Q ss_pred             cHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          194 GREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       194 ~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      .+.++...+...+...-.|.++|..|+|||||...++..
T Consensus        17 ~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          17 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            445566666655545567889999999999999999864

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.41  E-value=0.35  Score=40.51  Aligned_cols=107  Identities=20%  Similarity=0.146  Sum_probs=58.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCc---cc----------ccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc
Q 016120          210 AVVAILDSSGFDKTVFTADTYNND---HV----------KFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE  276 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~---~~----------~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~  276 (394)
                      .++.|.|+...||||+.+.+.-..   +.          -..|+. ++..+...-++..                 +.+ 
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~-I~~~~~~~d~~~~-----------------~~S-   96 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG-IYTRIGASDDLAG-----------------GKS-   96 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE-EEEECCC-----------------------CCS-
T ss_pred             cEEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecce-EEEEECCCccccC-----------------Ccc-
Confidence            367899999999999998774311   00          112332 3333332221111                 001 


Q ss_pred             CHHHHHHHHHHHc--cCCeEEEEEeCCCC--CchhHH----HHHhhCCCCCCCcEEEEecCChHHHhhc
Q 016120          277 DYQLKKSILRDYL--TNKKYFIVLDDVFD--NSEIWS----DLEELLPDDENGSRVLITVTDPDLLASL  337 (394)
Q Consensus       277 ~~~~~~~~l~~~l--~~kr~LlVlDdv~~--~~~~~~----~l~~~l~~~~~gs~IivTTR~~~v~~~~  337 (394)
                      +...-...+...+  .+++.|+++|.+..  ++.+=.    .+...|.  ..++++++||...++....
T Consensus        97 tF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~--~~~~~~i~tTH~~eL~~l~  163 (224)
T d1ewqa2          97 TFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALH--ERRAYTLFATHYFELTALG  163 (224)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHH--HHTCEEEEECCCHHHHTCC
T ss_pred             HHHHhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHh--hcCcceEEeeechhhhhhh
Confidence            3333334444444  36889999999987  332211    1222222  2467899999998877654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=0.057  Score=44.06  Aligned_cols=21  Identities=14%  Similarity=0.213  Sum_probs=18.0

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.++|.+|+|||+|...+.++
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568999999999999887654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=91.29  E-value=0.041  Score=44.18  Aligned_cols=25  Identities=20%  Similarity=-0.013  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhcC
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +...|+|+|.+++|||||...+...
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4677899999999999999988653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=91.22  E-value=0.078  Score=42.12  Aligned_cols=25  Identities=20%  Similarity=0.134  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcCc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNND  233 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~~  233 (394)
                      -.+|.+.|.=|+||||+++.+++..
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhc
Confidence            4589999999999999999998743

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.20  E-value=0.052  Score=43.84  Aligned_cols=22  Identities=9%  Similarity=0.125  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|.+|+|||+|...+.++
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5678999999999999988664

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=91.17  E-value=0.054  Score=42.54  Aligned_cols=21  Identities=14%  Similarity=0.063  Sum_probs=18.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -|+++|.+|+|||||...+..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            367999999999999998874

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.12  E-value=0.044  Score=51.35  Aligned_cols=22  Identities=14%  Similarity=0.232  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +-|.++|+.|+|||.||+.++.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999987

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.94  E-value=0.054  Score=44.01  Aligned_cols=21  Identities=14%  Similarity=0.153  Sum_probs=18.0

Q ss_pred             EEEEcCCCccHHHHHHHHhcC
Q 016120          212 VAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~~  232 (394)
                      |.++|.+|+|||+|...+..+
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            568999999999999888653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.91  E-value=0.058  Score=43.53  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      --|+|+|..|+|||||...+.+.
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            35789999999999999888763

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.21  E-value=0.043  Score=44.02  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=8.6

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -|.++|.+|+|||||...+.++
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678999999999999877653

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=90.18  E-value=0.4  Score=42.52  Aligned_cols=106  Identities=14%  Similarity=0.115  Sum_probs=57.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCCCCCccccCc-CHHHHHHHHHHHc
Q 016120          211 VVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPPSRVSVIIGE-DYQLKKSILRDYL  289 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~~l  289 (394)
                      .+.|.|..|+||||+.+.+..  .+-.+ ...+-+.-.....+           ....... .... ..-...+.++..|
T Consensus       168 nili~G~tgSGKTT~l~al~~--~i~~~-~rivtiEd~~El~l-----------~~~~~~~-~~~~~~~~~~~~ll~~~l  232 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIME--FIPKE-ERIISIEDTEEIVF-----------KHHKNYT-QLFFGGNITSADCLKSCL  232 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGG--GSCTT-CCEEEEESSCCCCC-----------SSCSSEE-EEECBTTBCHHHHHHHHT
T ss_pred             CEEEEeeccccchHHHHHHhh--hcccc-cceeeccchhhhhc-----------ccccccc-eeccccchhHHHHHHHHh
Confidence            467899999999999999986  22211 11222211111110           0000000 0000 1112345567778


Q ss_pred             cCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChHHHh
Q 016120          290 TNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPDLLA  335 (394)
Q Consensus       290 ~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~v~~  335 (394)
                      +..+=-+|+..+.+ .+.|+-+. ....+..|  ++.|....+...
T Consensus       233 R~~pd~iivgEiR~-~ea~~~l~-a~~tGh~g--~~tT~Ha~s~~~  274 (323)
T d1g6oa_         233 RMRPDRIILGELRS-SEAYDFYN-VLCSGHKG--TLTTLHAGSSEE  274 (323)
T ss_dssp             TSCCSEEEESCCCS-THHHHHHH-HHHTTCSC--EEEEECCSSHHH
T ss_pred             ccCCCcccCCccCc-hhHHHHHH-HHHhcCCc--EEEEECCCCHHH
Confidence            77777799999999 88887554 44444445  566666554433

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.96  E-value=0.073  Score=44.67  Aligned_cols=22  Identities=9%  Similarity=0.058  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .-|.++|.+|+|||||.+.+..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3567999999999999988753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=89.53  E-value=0.087  Score=43.82  Aligned_cols=24  Identities=21%  Similarity=0.142  Sum_probs=19.6

Q ss_pred             CceEEEEEcCCCccHHHHHHHHhc
Q 016120          208 GLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .-.++.|.|.+|+|||++|..+..
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            345888999999999999976543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=89.33  E-value=0.09  Score=45.25  Aligned_cols=22  Identities=18%  Similarity=0.277  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+..|+|.+|+||||||..++.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            4677999999999999977764

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.30  E-value=0.1  Score=42.90  Aligned_cols=22  Identities=14%  Similarity=0.084  Sum_probs=18.6

Q ss_pred             eEEEEEcCC-CccHHHHHHHHhc
Q 016120          210 AVVAILDSS-GFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~g-GiGKTtLA~~v~~  231 (394)
                      +.+-|.|-| ||||||++..+..
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            456789998 9999999888776

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.03  E-value=0.091  Score=45.81  Aligned_cols=23  Identities=22%  Similarity=0.108  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCccHHHHHHHHh
Q 016120          208 GLAVVAILDSSGFDKTVFTADTY  230 (394)
Q Consensus       208 ~~~vi~I~G~gGiGKTtLA~~v~  230 (394)
                      +.+-|+|+|.+|.|||||+-.+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHH
T ss_pred             hceEEEEEeCCCCCHHHHHHHHH
Confidence            47789999999999999997774

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.89  E-value=0.039  Score=43.37  Aligned_cols=20  Identities=15%  Similarity=0.268  Sum_probs=18.4

Q ss_pred             EEEEcCCCccHHHHHHHHhc
Q 016120          212 VAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       212 i~I~G~gGiGKTtLA~~v~~  231 (394)
                      |+++|.+|+|||||...+..
T Consensus         3 I~liG~~n~GKSSLin~l~g   22 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLN   22 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=88.47  E-value=0.12  Score=41.81  Aligned_cols=22  Identities=27%  Similarity=0.277  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .-+.|.|.+|+||||+|..+..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            3467899999999999988765

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=88.47  E-value=0.11  Score=42.00  Aligned_cols=22  Identities=23%  Similarity=0.169  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .-|.|.|.+|+||||+|..+..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            4567899999999999988765

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=87.56  E-value=0.14  Score=41.15  Aligned_cols=22  Identities=23%  Similarity=0.209  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCccHHHHHHHHhc
Q 016120          210 AVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .-|.|.|.+|+||||+|..+..
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            3567999999999999988765

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=87.35  E-value=0.16  Score=43.99  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCccHHHHHHHHh
Q 016120          209 LAVVAILDSSGFDKTVFTADTY  230 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~  230 (394)
                      .|-|+|+|..|.|||||+..+.
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             eeEEEEEcCCCCcHHHHHHHHH
Confidence            4678999999999999998773

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=87.27  E-value=0.15  Score=47.02  Aligned_cols=124  Identities=13%  Similarity=0.086  Sum_probs=62.1

Q ss_pred             cceecccHHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcCcccccccCeeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 016120          188 INEFERGREELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNNDHVKFYFDCLAWVRVSIAYDFGKMLDDIIKSVMPP  267 (394)
Q Consensus       188 ~~Gr~~~~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~  267 (394)
                      -.|.....-+.++.+...  ..++|.|.|+.|+||||....+.+.  +...-..++=+.-+-.+....+.     +.   
T Consensus       139 ~LG~~~~~~~~l~~l~~~--~~GliLvtGpTGSGKSTTl~~~l~~--~~~~~~~i~tiEdPiE~~~~~~~-----q~---  206 (401)
T d1p9ra_         139 SLGMTAHNHDNFRRLIKR--PHGIILVTGPTGSGKSTTLYAGLQE--LNSSERNILTVEDPIEFDIDGIG-----QT---  206 (401)
T ss_dssp             GSCCCHHHHHHHHHHHTS--SSEEEEEECSTTSCHHHHHHHHHHH--HCCTTSCEEEEESSCCSCCSSSE-----EE---
T ss_pred             hhcccHHHHHHHHHHHhh--hhceEEEEcCCCCCccHHHHHHhhh--hcCCCceEEEeccCcccccCCCC-----ee---
Confidence            345544433334444433  3689999999999999988777662  21111122222211111110000     00   


Q ss_pred             CCCccccCc-CHHHHHHHHHHHccCCeEEEEEeCCCCCchhHHHHHhhCCCCCCCcEEEEecCChH
Q 016120          268 SRVSVIIGE-DYQLKKSILRDYLTNKKYFIVLDDVFDNSEIWSDLEELLPDDENGSRVLITVTDPD  332 (394)
Q Consensus       268 ~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~l~~~l~~~~~gs~IivTTR~~~  332 (394)
                           .+.. +.......++..|+..+=.|++.++.+ .+.-..   ++.....|..|+-|-...+
T Consensus       207 -----~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd-~~ta~~---a~~aa~tGhlV~tTlHa~~  263 (401)
T d1p9ra_         207 -----QVNPRVDMTFARGLRAILRQDPDVVMVGEIRD-LETAQI---AVQASLTGHLVMSTLHTNT  263 (401)
T ss_dssp             -----ECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS-HHHHHH---HHHHHHTTCEEEEEECCSS
T ss_pred             -----eecCCcCCCHHHHHHHHHhhcCCEEEecCcCC-hHHHHH---HHHHHhcCCeEEEEeccCc
Confidence                 0111 222345567777777777888888888 533222   2222234665666655443

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.22  E-value=0.16  Score=42.57  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .++|+|+|..+.|||||...+..
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCccHHHHHHHHHh
Confidence            35799999999999999988754

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.11  E-value=0.29  Score=42.49  Aligned_cols=36  Identities=19%  Similarity=0.168  Sum_probs=28.9

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhcC
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +.++.|..-+..+.||+|+|+-+.|||+|...++..
T Consensus        20 e~l~~l~~~~~~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          20 EALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             HHHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCCEEEEEEECCCCCCHHHHHHHHcCC
Confidence            344555555557999999999999999999999863

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=87.02  E-value=0.19  Score=45.49  Aligned_cols=50  Identities=12%  Similarity=0.074  Sum_probs=30.2

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcCc-ccccccCeeEEEEeCCCCCHHHHHHH
Q 016120          210 AVVAILDSSGFDKTVFTADTYNND-HVKFYFDCLAWVRVSIAYDFGKMLDD  259 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~i~~~  259 (394)
                      ++..|.|++|.||||++..+.... +....=..++.++..++-....+...
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~  214 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES  214 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHH
Confidence            588899999999999876544310 11111234677777665444444333

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=86.90  E-value=0.26  Score=43.96  Aligned_cols=24  Identities=8%  Similarity=0.019  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhcC
Q 016120          209 LAVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      +-.|.|=|.-|+||||+++.+.+.
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHH
Confidence            456788899999999999999983

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=85.36  E-value=0.33  Score=39.86  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=27.4

Q ss_pred             HHHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          195 REELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       195 ~~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +..+..+|. +.+....+.++|+++.|||++|..+.+
T Consensus        40 l~~l~~~l~-~~PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          40 LGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             HHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCCceEEEEECCCCccHHHHHHHHHH
Confidence            445555554 345667888999999999999988876

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=85.13  E-value=0.12  Score=43.78  Aligned_cols=22  Identities=14%  Similarity=0.161  Sum_probs=18.5

Q ss_pred             EEEEEcCCCccHHHHHHHHhcC
Q 016120          211 VVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      ...++|.+|+|||||...+..+
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            4458899999999999999874

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=84.15  E-value=0.27  Score=39.36  Aligned_cols=21  Identities=14%  Similarity=0.127  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      -|+|+|..++|||||...+..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            589999999999999998875

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=83.98  E-value=0.51  Score=40.57  Aligned_cols=35  Identities=6%  Similarity=-0.010  Sum_probs=26.8

Q ss_pred             HHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHhc
Q 016120          197 ELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       197 ~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .+..+|....+....+.++|+|+.|||+++..+.+
T Consensus        92 ~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_          92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            34445554445567888999999999999988876

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=83.66  E-value=0.25  Score=44.05  Aligned_cols=23  Identities=30%  Similarity=0.143  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      ...|+|=|.=|+||||+++.+.+
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            45688999999999999999976

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.46  E-value=0.41  Score=42.81  Aligned_cols=34  Identities=9%  Similarity=0.217  Sum_probs=25.8

Q ss_pred             HHHHHHHhcCCCCceEEEEEcCCCccHHHHHHHHh
Q 016120          196 EELFDLLIEGPSGLAVVAILDSSGFDKTVFTADTY  230 (394)
Q Consensus       196 ~~i~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~  230 (394)
                      +.+.+++.. ....|-|+|+|..|.|||||+-.+.
T Consensus         5 ~~~~~lm~~-~~~IRNI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2           5 DQMRSLMDK-VTNVRNMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             HHHHHHHHC-GGGEEEEEEECCGGGTHHHHHHHHH
T ss_pred             HHHHHHhcC-cccCcEEEEEeCCCCcHHHHHHHHH
Confidence            445554443 3468889999999999999997774

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=81.67  E-value=0.32  Score=42.50  Aligned_cols=15  Identities=27%  Similarity=0.335  Sum_probs=12.7

Q ss_pred             EEEEcCCCccHHHHH
Q 016120          212 VAILDSSGFDKTVFT  226 (394)
Q Consensus       212 i~I~G~gGiGKTtLA  226 (394)
                      +.|.|.+|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            568899999999755

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=81.63  E-value=0.14  Score=41.05  Aligned_cols=21  Identities=19%  Similarity=0.188  Sum_probs=17.4

Q ss_pred             EEEEEcCCCccHHHHHHHHhc
Q 016120          211 VVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      +..|+|+.|+||||+..++.-
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            445789999999999988853

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=81.13  E-value=0.48  Score=42.11  Aligned_cols=23  Identities=13%  Similarity=0.153  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCccHHHHHHHHhcC
Q 016120          210 AVVAILDSSGFDKTVFTADTYNN  232 (394)
Q Consensus       210 ~vi~I~G~gGiGKTtLA~~v~~~  232 (394)
                      -.|+|=|.-|+||||+++.+.+.
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35788899999999999999874

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=81.10  E-value=0.31  Score=42.11  Aligned_cols=22  Identities=18%  Similarity=0.425  Sum_probs=15.9

Q ss_pred             EEEEEeCCCC-CchhHHHHHhhC
Q 016120          294 YFIVLDDVFD-NSEIWSDLEELL  315 (394)
Q Consensus       294 ~LlVlDdv~~-~~~~~~~l~~~l  315 (394)
                      -.+++|+..+ ++.+|.-+....
T Consensus       208 ~~i~vDE~QD~~~~~~~~l~~~~  230 (306)
T d1uaaa1         208 RYLLVDEYQDTNTSQYELVKLLV  230 (306)
T ss_dssp             SEEEESCGGGCBHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhHHHHhhhhhcc
Confidence            3789999998 666777666544

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.68  E-value=0.38  Score=44.05  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCccHHHHHHHHhc
Q 016120          209 LAVVAILDSSGFDKTVFTADTYN  231 (394)
Q Consensus       209 ~~vi~I~G~gGiGKTtLA~~v~~  231 (394)
                      .--|+|+|.+|+|||||...+..
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            45689999999999999998864

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.55  E-value=0.42  Score=39.29  Aligned_cols=20  Identities=25%  Similarity=0.202  Sum_probs=17.7

Q ss_pred             EEEEEcCCCccHHHHHHHHh
Q 016120          211 VVAILDSSGFDKTVFTADTY  230 (394)
Q Consensus       211 vi~I~G~gGiGKTtLA~~v~  230 (394)
                      -|+|+|..+.|||||+.++.
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHH
Confidence            47899999999999998774