Citrus Sinensis ID: 016122

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----

MLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTTHENQHSTNESGNASLYSLPREDIASMQLPSRSGTVDID

ccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEEEcccHHHHHccccccccccccHHHHHHHHHccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccccccccccccccccccccccccccccccc

ccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccccHHHHHHHHHHHEEccccEHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHcHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHcccccccccccccccHHHHHcccccccccccccc

MLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFfaelgyakpeaKEVLHglfvpqlkgngatGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGavcsssninpedqasckdldlnkASFLLRNVLGSWSSKLFAIALLAsgqsstitgtYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFelpfalvpllkftsskvkmgmhANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTThenqhstnesgnaslyslprediasmqlpsrsgtvdid

*LFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNI******SCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLAL****************************************

MLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALV**************ACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEA****************************EDIAS*************

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SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		394	2.2.26 [Sep-21-2011]
Q9S9N8		527	Metal transporter Nramp6	yes	no	0.969	0.724	0.780	1e-176
Q9SAH8		532	Metal transporter Nramp1	no	no	0.972	0.719	0.766	1e-173
Q653V6		550	Metal transporter Nramp3	yes	no	1.0	0.716	0.717	1e-160
Q8H4H5		538	Metal transporter Nramp5	no	no	0.977	0.715	0.597	1e-123
Q0D7E4		518	Metal transporter Nramp1	no	no	0.875	0.666	0.608	1e-120
Q6ZG85		545	Metal transporter NRAT1 O	no	no	0.984	0.711	0.5	1e-110
Q5QN13		550	Metal transporter Nramp4	no	no	0.865	0.62	0.438	3e-81
Q10Q65		524	Metal transporter Nramp2	no	no	0.852	0.641	0.392	6e-55
Q8Y773		448	Divalent metal cation tra	yes	no	0.743	0.654	0.413	5e-54
B8DE85		448	Divalent metal cation tra	yes	no	0.743	0.654	0.413	5e-54

>sp\|Q9S9N8\|NRAM6_ARATH Metal transporter Nramp6 OS=Arabidopsis thaliana GN=NRAMP6 PE=2 SV=2	Back alignment and function desciption

 Score =  618 bits (1594), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 305/391 (78%), Positives = 346/391 (88%), Gaps = 9/391 (2%)

Query: 1   MLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKE 60
           MLF IPVWIGVLLTG STLILLALQQYG+RKLEFLIAFLVFT+A CFF EL Y+KP+ KE
Sbjct: 142 MLFNIPVWIGVLLTGLSTLILLALQQYGIRKLEFLIAFLVFTIALCFFVELHYSKPDPKE 201

Query: 61  VLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMI 120
           VL+GLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSV  IKEACR+Y+I
Sbjct: 202 VLYGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVTGIKEACRYYLI 261

Query: 121 ESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKL 180
           ESG AL VAFLINVSVISVSGAVC++S+++PED+ASC+DLDLNKASFLLRNV+G WSSKL
Sbjct: 262 ESGLALMVAFLINVSVISVSGAVCNASDLSPEDRASCQDLDLNKASFLLRNVVGKWSSKL 321

Query: 181 FAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAG 240
           FAIALLASGQSSTITGTYAGQYVMQGFLDLRL+PWLRNFLTRCLAI+PSLIVALIGGSAG
Sbjct: 322 FAIALLASGQSSTITGTYAGQYVMQGFLDLRLEPWLRNFLTRCLAIIPSLIVALIGGSAG 381

Query: 241 AGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYY 300
           AG+LIIIASMILSFELPFALVPLLKFTSSK KMG HANS+ I+++TWIIG LIM IN+YY
Sbjct: 382 AGKLIIIASMILSFELPFALVPLLKFTSSKTKMGSHANSLVISSVTWIIGGLIMGINIYY 441

Query: 301 LATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTTHENQ 360
           L +SFIK L H ++ LV +VFLG+ GFS +A YLA ++YLVLRKN+E+S     +TH   
Sbjct: 442 LVSSFIKLLLHSHMNLVAIVFLGVLGFSGIATYLAAISYLVLRKNRESS-----STHFLD 496

Query: 361 HSTNESGNASLYSLPREDIASMQLPSRSGTV 391
            S +++      +LPREDIA+MQLP+R   +
Sbjct: 497 FSNSQTEE----TLPREDIANMQLPNRVAVI 523

Probable intracellular cadmium (Cd) transporter that participates in the distribution or availability of Cd within the cell.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SAH8\|NRAM1_ARATH Metal transporter Nramp1 OS=Arabidopsis thaliana GN=NRAMP1 PE=1 SV=1	Back alignment and function description

>sp\|Q653V6\|NRAM3_ORYSJ Metal transporter Nramp3 OS=Oryza sativa subsp. japonica GN=NRAMP3 PE=2 SV=1	Back alignment and function description

>sp\|Q8H4H5\|NRAM5_ORYSJ Metal transporter Nramp5 OS=Oryza sativa subsp. japonica GN=NRAMP5 PE=2 SV=1	Back alignment and function description

>sp\|Q0D7E4\|NRAM1_ORYSJ Metal transporter Nramp1 OS=Oryza sativa subsp. japonica GN=NRAMP1 PE=2 SV=1	Back alignment and function description

>sp\|Q6ZG85\|NRAT1_ORYSJ Metal transporter NRAT1 OS=Oryza sativa subsp. japonica GN=NRAT1 PE=2 SV=1	Back alignment and function description

>sp\|Q5QN13\|NRAM4_ORYSJ Metal transporter Nramp4 OS=Oryza sativa subsp. japonica GN=NRAMP4 PE=2 SV=1	Back alignment and function description

>sp\|Q10Q65\|NRAM2_ORYSJ Metal transporter Nramp2 OS=Oryza sativa subsp. japonica GN=NRAMP2 PE=2 SV=1	Back alignment and function description

>sp\|Q8Y773\|MNTH_LISMO Divalent metal cation transporter MntH OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=mntH PE=3 SV=1	Back alignment and function description

>sp\|B8DE85\|MNTH_LISMH Divalent metal cation transporter MntH OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=mntH PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		394
356550656		544	PREDICTED: metal transporter Nramp6-like	1.0	0.724	0.817	0.0
255572735		546	metal transporter, putative [Ricinus com	0.984	0.710	0.842	0.0
356557217		546	PREDICTED: metal transporter Nramp6-like	1.0	0.721	0.820	0.0
224115800		541	nramp transporter [Populus trichocarpa]	0.992	0.722	0.829	0.0
356523294		545	PREDICTED: metal transporter Nramp1-like	1.0	0.722	0.809	0.0
356526260		550	PREDICTED: metal transporter Nramp6-like	0.997	0.714	0.810	0.0
225465528		541	PREDICTED: metal transporter Nramp6 [Vit	1.0	0.728	0.817	0.0
82581291		537	NRAMP family metal transporter [Chengiop	0.992	0.728	0.796	1e-179
6587802		522	Strong similarity to gi\|2130080 Nramp1 p	0.969	0.731	0.780	1e-175
79346106		527	metal transporter Nramp6 [Arabidopsis th	0.969	0.724	0.780	1e-174

>gi\|356550656\|ref\|XP_003543701.1\| PREDICTED: metal transporter Nramp6-like [Glycine max]	Back alignment and taxonomy information

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/394 (81%), Positives = 349/394 (88%)

Query: 1   MLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKE 60
           MLF IPVWIGVLLTG STL+LLALQQYGVRKLEFLIAFLVFT+A CF  ELGYAKP+AKE
Sbjct: 151 MLFNIPVWIGVLLTGLSTLMLLALQQYGVRKLEFLIAFLVFTIAACFMVELGYAKPDAKE 210

Query: 61  VLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMI 120
           VL GLF P+LKG+GATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSV+ I+EACRFYMI
Sbjct: 211 VLKGLFEPELKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVQGIREACRFYMI 270

Query: 121 ESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKL 180
           ES FAL VAFLINV VISVSGAVC+SSN+N EDQ SC+DLDLNKASFLLRNVLG WSSKL
Sbjct: 271 ESAFALMVAFLINVCVISVSGAVCNSSNLNAEDQMSCQDLDLNKASFLLRNVLGKWSSKL 330

Query: 181 FAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAG 240
           F IAL ASGQSSTITGTYAGQYVMQGFLDLRL+PW+RN LTRCLAIVPSLIVA+IGGSAG
Sbjct: 331 FGIALFASGQSSTITGTYAGQYVMQGFLDLRLEPWIRNMLTRCLAIVPSLIVAVIGGSAG 390

Query: 241 AGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYY 300
           AG+LII+ASMILSFELPFALVPLLKFTSSK KMG H NS  I+A+TWIIG+L+M IN+YY
Sbjct: 391 AGKLIIVASMILSFELPFALVPLLKFTSSKTKMGTHVNSTMISAVTWIIGTLLMAINIYY 450

Query: 301 LATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTTHENQ 360
           L T FIK L H +LK+   VFLGI GFS MA+YLAG+ YLVLRKNKEA+HLLALT  ENQ
Sbjct: 451 LITGFIKLLLHSHLKIAAKVFLGILGFSGMAMYLAGITYLVLRKNKEATHLLALTATENQ 510

Query: 361 HSTNESGNASLYSLPREDIASMQLPSRSGTVDID 394
             TNE GN S+YSLPREDI SMQLP RS   D+D
Sbjct: 511 QMTNEQGNGSIYSLPREDIVSMQLPQRSTPADVD 544

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255572735\|ref\|XP_002527300.1\| metal transporter, putative [Ricinus communis] gi\|223533300\|gb\|EEF35052.1\| metal transporter, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356557217\|ref\|XP_003546914.1\| PREDICTED: metal transporter Nramp6-like [Glycine max]	Back alignment and taxonomy information

>gi\|224115800\|ref\|XP_002332060.1\| nramp transporter [Populus trichocarpa] gi\|222831946\|gb\|EEE70423.1\| nramp transporter [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356523294\|ref\|XP_003530275.1\| PREDICTED: metal transporter Nramp1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356526260\|ref\|XP_003531736.1\| PREDICTED: metal transporter Nramp6-like [Glycine max]	Back alignment and taxonomy information

>gi\|225465528\|ref\|XP_002273263.1\| PREDICTED: metal transporter Nramp6 [Vitis vinifera] gi\|297745101\|emb\|CBI38940.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|82581291\|dbj\|BAE48710.1\| NRAMP family metal transporter [Chengiopanax sciadophylloides]	Back alignment and taxonomy information

>gi\|6587802\|gb\|AAF18493.1\|AC010924_6 Strong similarity to gi\|2130080 Nramp1 protein from Oryza sativa and contains a PF\|01566 Nramp domain [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|79346106\|ref\|NP_173048.3\| metal transporter Nramp6 [Arabidopsis thaliana] gi\|30173130\|sp\|Q9S9N8.2\|NRAM6_ARATH RecName: Full=Metal transporter Nramp6; Short=AtNramp6 gi\|12666983\|emb\|CAC28123.1\| putative metal transporter [Arabidopsis thaliana] gi\|332191269\|gb\|AEE29390.1\| metal transporter Nramp6 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		394
TAIR\|locus:2200437		527	NRAMP6 "NRAMP metal ion transp	0.969	0.724	0.780	1.3e-157
TAIR\|locus:2025677		532	NRAMP1 "natural resistance-ass	0.972	0.719	0.769	5.6e-155
UNIPROTKB\|Q0D7E4		518	NRAMP1 "Metal transporter Nram	0.875	0.666	0.608	6.6e-113
UNIPROTKB\|Q6ZG85		545	NRAT1 "Metal transporter NRAT1	0.890	0.644	0.538	1e-100
DICTYBASE\|DDB_G0275815		629	nramp2 "putative manganese tra	0.911	0.570	0.389	1e-59
UNIPROTKB\|A7MBI9		562	SLC11A2 "Uncharacterized prote	0.583	0.409	0.326	4.2e-55
MGI\|MGI:1345279		568	Slc11a2 "solute carrier family	0.532	0.369	0.331	1.3e-53
TAIR\|locus:2158242		512	NRAMP4 "natural resistance ass	0.878	0.675	0.379	6.3e-53
TAIR\|locus:2124172		530	NRAMP5 [Arabidopsis thaliana (	0.868	0.645	0.349	2.7e-52
TAIR\|locus:2036751		530	NRAMP2 "NRAMP metal ion transp	0.827	0.615	0.372	7.2e-52

TAIR\|locus:2200437 NRAMP6 "NRAMP metal ion transporter 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1536 (545.8 bits), Expect = 1.3e-157, P = 1.3e-157
 Identities = 305/391 (78%), Positives = 346/391 (88%)

Query:     1 MLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKE 60
             MLF IPVWIGVLLTG STLILLALQQYG+RKLEFLIAFLVFT+A CFF EL Y+KP+ KE
Sbjct:   142 MLFNIPVWIGVLLTGLSTLILLALQQYGIRKLEFLIAFLVFTIALCFFVELHYSKPDPKE 201

Query:    61 VLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMI 120
             VL+GLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSV  IKEACR+Y+I
Sbjct:   202 VLYGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVTGIKEACRYYLI 261

Query:   121 ESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKL 180
             ESG AL VAFLINVSVISVSGAVC++S+++PED+ASC+DLDLNKASFLLRNV+G WSSKL
Sbjct:   262 ESGLALMVAFLINVSVISVSGAVCNASDLSPEDRASCQDLDLNKASFLLRNVVGKWSSKL 321

Query:   181 FAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAG 240
             FAIALLASGQSSTITGTYAGQYVMQGFLDLRL+PWLRNFLTRCLAI+PSLIVALIGGSAG
Sbjct:   322 FAIALLASGQSSTITGTYAGQYVMQGFLDLRLEPWLRNFLTRCLAIIPSLIVALIGGSAG 381

Query:   241 AGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYY 300
             AG+LIIIASMILSFELPFALVPLLKFTSSK KMG HANS+ I+++TWIIG LIM IN+YY
Sbjct:   382 AGKLIIIASMILSFELPFALVPLLKFTSSKTKMGSHANSLVISSVTWIIGGLIMGINIYY 441

Query:   301 LATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTTHENQ 360
             L +SFIK L H ++ LV +VFLG+ GFS +A YLA ++YLVLRKN+E+S     +TH   
Sbjct:   442 LVSSFIKLLLHSHMNLVAIVFLGVLGFSGIATYLAAISYLVLRKNRESS-----STHFLD 496

Query:   361 HSTNESGNASLYSLPREDIASMQLPSRSGTV 391
              S +++      +LPREDIA+MQLP+R   +
Sbjct:   497 FSNSQTEE----TLPREDIANMQLPNRVAVI 523

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=ISS;NAS

GO:0046873 "metal ion transmembrane transporter activity" evidence=ISS;NAS

GO:0006875 "cellular metal ion homeostasis" evidence=NAS

GO:0015086 "cadmium ion transmembrane transporter activity" evidence=IDA

GO:0070574 "cadmium ion transmembrane transport" evidence=IDA

GO:0006828 "manganese ion transport" evidence=RCA

GO:0015691 "cadmium ion transport" evidence=RCA

TAIR\|locus:2025677 NRAMP1 "natural resistance-associated macrophage protein 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q0D7E4 NRAMP1 "Metal transporter Nramp1" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6ZG85 NRAT1 "Metal transporter NRAT1" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0275815 nramp2 "putative manganese transporter" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|A7MBI9 SLC11A2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1345279 Slc11a2 "solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

TAIR\|locus:2158242 NRAMP4 "natural resistance associated macrophage protein 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124172 NRAMP5 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2036751 NRAMP2 "NRAMP metal ion transporter 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S9N8	NRAM6_ARATH	No assigned EC number	0.7800	0.9695	0.7248	yes	no
Q653V6	NRAM3_ORYSJ	No assigned EC number	0.7178	1.0	0.7163	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.208.100.1	annotation not avaliable (416 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		394
PRK00701		439	PRK00701, PRK00701, manganese transport protein Mn	1e-96
pfam01566		364	pfam01566, Nramp, Natural resistance-associated ma	3e-85
TIGR01197		390	TIGR01197, nramp, NRAMP (natural resistance-associ	5e-71
COG1914		416	COG1914, MntH, Mn2+ and Fe2+ transporters of the N	2e-59

>gnl\|CDD\|234815 PRK00701, PRK00701, manganese transport protein MntH; Reviewed	Back alignment and domain information

 Score =  294 bits (756), Expect = 1e-96
 Identities = 132/307 (42%), Positives = 186/307 (60%), Gaps = 11/307 (3%)

Query: 2   LFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEV 61
           LF IP+  G L+T   T ++L LQ+ G R LE +I  L+  +A  F  EL  A+P+   V
Sbjct: 138 LFGIPLLQGALITALDTFLILMLQRRGFRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAV 197

Query: 62  LHGLFVPQ---LKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFY 118
           L G F+P    L    A  LA  +LGA VMPHNL+LHS+LV +R + R+    +EA RF 
Sbjct: 198 LKG-FIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVVGRTGEEKREALRFT 256

Query: 119 MIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSS 178
            I+S  AL +A  +N +++ ++ A   +S             D+  A  LL  +LG+ ++
Sbjct: 257 RIDSAIALTIAGFVNAAMLILAAAAFHASGHTDVA-------DIEDAYLLLSPLLGAAAA 309

Query: 179 KLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGS 238
            LF IALLASG SST+ GT AGQ VM+GFL LR+  W+R  +TR LA+VP+LIV L+GG 
Sbjct: 310 TLFGIALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLGGE 369

Query: 239 AGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINV 298
               +L++++ ++LSF LPFAL+PLL FTS +  MG   N   +  I WII  LI+ +N+
Sbjct: 370 LDPTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVKIIAWIIAVLIVALNI 429

Query: 299 YYLATSF 305
           Y L  +F
Sbjct: 430 YLLYQTF 436

Length = 439

>gnl\|CDD\|216575 pfam01566, Nramp, Natural resistance-associated macrophage protein	Back alignment and domain information

>gnl\|CDD\|162246 TIGR01197, nramp, NRAMP (natural resistance-associated macrophage protein) metal ion transporters	Back alignment and domain information

>gnl\|CDD\|224826 COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		394
KOG1291		503	consensus Mn2+ and Fe2+ transporters of the NRAMP	100.0
PRK00701		439	manganese transport protein MntH; Reviewed	100.0
TIGR01197		390	nramp NRAMP (natural resistance-associated macroph	100.0
COG1914		416	MntH Mn2+ and Fe2+ transporters of the NRAMP famil	100.0
PF01566		358	Nramp: Natural resistance-associated macrophage pr	100.0
COG0733		439	Na+-dependent transporters of the SNF family [Gene	97.14
COG1457		442	CodB Purine-cytosine permease and related proteins	97.1
PF03222		394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	97.04
PF01235		416	Na_Ala_symp: Sodium:alanine symporter family; Inte	96.92
PRK15132		403	tyrosine transporter TyrP; Provisional	96.86
TIGR00835		425	agcS amino acid carrier protein. Members of the AG	96.69
PRK10483		414	tryptophan permease; Provisional	96.55
TIGR00837		381	araaP aromatic amino acid transport protein. aroma	96.44
PF00209		523	SNF: Sodium:neurotransmitter symporter family; Int	95.87
PRK11375		484	allantoin permease; Provisional	95.85
TIGR00907		482	2A0304 amino acid permease (GABA permease).	95.79
TIGR00813		407	sss transporter, SSS family. have different number	95.76
COG1115		452	AlsT Na+/alanine symporter [Amino acid transport a	95.62
COG3949		349	Uncharacterized membrane protein [Function unknown	95.56
TIGR00905		473	2A0302 transporter, basic amino acid/polyamine ant	95.35
PRK09442		483	panF sodium/panthothenate symporter; Provisional	94.47
PRK15049		499	L-asparagine permease; Provisional	94.44
PRK15419		502	proline:sodium symporter PutP; Provisional	94.44
PRK13629		443	threonine/serine transporter TdcC; Provisional	94.34
PRK15433		439	branched-chain amino acid transport system 2 carri	94.09
TIGR00796		378	livcs branched-chain amino acid uptake carrier. tr	93.95
PRK09664		415	tryptophan permease TnaB; Provisional	93.89
TIGR00814		397	stp serine transporter. The HAAAP family includes	93.58
PF00474		406	SSF: Sodium:solute symporter family; InterPro: IPR	93.55
PRK11357		445	frlA putative fructoselysine transporter; Provisio	93.3
PF05525		427	Branch_AA_trans: Branched-chain amino acid transpo	93.13
PF13520		426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	93.04
TIGR00930		953	2a30 K-Cl cotransporter.	92.77
PRK11387		471	S-methylmethionine transporter; Provisional	92.69
TIGR02119		471	panF sodium/pantothenate symporter. Pantothenate (	92.34
PRK12488		549	acetate permease; Provisional	92.24
TIGR02358		386	thia_cytX probable hydroxymethylpyrimidine transpo	91.81
PF02133		440	Transp_cyt_pur: Permease for cytosine/purines, ura	90.96
TIGR00910		507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	90.67
TIGR00913		478	2A0310 amino acid permease (yeast).	90.16
PRK11021		410	putative transporter; Provisional	89.84
TIGR00908		442	2A0305 ethanolamine permease. The three genes used	89.37
PRK10484		523	putative transporter; Provisional	88.97
TIGR02121		487	Na_Pro_sym sodium/proline symporter. This family c	88.6
COG1114		431	BrnQ Branched-chain amino acid permeases [Amino ac	87.56
TIGR00909		429	2A0306 amino acid transporter.	87.48
TIGR00911		501	2A0308 L-type amino acid transporter.	86.91
TIGR03810		468	arg_ornith_anti arginine/ornithine antiporter. Mem	86.86
PRK11017		404	codB cytosine permease; Provisional	86.67
TIGR02711		549	symport_actP cation/acetate symporter ActP. Member	86.36
PRK10238		456	aromatic amino acid transporter; Provisional	84.78
PF00324		478	AA_permease: Amino acid permease; InterPro: IPR004	83.83
PRK10836		489	lysine transporter; Provisional	82.36
KOG1289		550	consensus Amino acid transporters [Amino acid tran	80.67

>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=1.8e-79  Score=612.64  Aligned_cols=339  Identities=46%  Similarity=0.705  Sum_probs=305.2

Q ss_pred             CcccCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCHhhhhccccccccCCC--ChHHH
Q 016122            1 MLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGN--GATGL   78 (394)
Q Consensus         1 lLfgiPl~~gvlit~~~t~~lL~l~~~g~rklE~~~~~Lv~im~l~F~~~~~~~~P~~~~v~~Gl~vP~~~~~--~~~~~   78 (394)
                      +|++||+|+||++|++|||++++++|||.||+|.++++|+.+|++||.+|+..+||+.+|++.|+|+|+++++  +.+++
T Consensus       132 iL~~IPL~~GVliTilD~f~fL~l~kyGiRklE~~~~~Li~~mai~F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~  211 (503)
T KOG1291|consen  132 ILSNIPLWAGVLITILDTFLFLFLDKYGIRKLEAFFAFLIVTMAISFGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQ  211 (503)
T ss_pred             HHhCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHheeEEEecCCchheeeeeecccccCCCCcHHHH
Confidence            5889999999999999999999999999999999999999999999999999999999999999999999974  57889


Q ss_pred             HHHHhhchhhhHHHHHhhhhhhhccCCCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCC-CCC---
Q 016122           79 AISLLGAMVMPHNLFLHSALVLSRKIPRSV-RSIKEACRFYMIESGFALAVAFLINVSVISVS-GAVCSSSNI-NPE---  152 (394)
Q Consensus        79 avaivGatImPhnlflhS~lv~~R~~~~~~-~~ik~a~~~~~ids~ial~vs~lIn~aIv~v~-A~v~~~~g~-~~~---  152 (394)
                      ++|++||+|||||+|+||++||+|+.||+. ++++|+++|+.+|+.++++++|.||.+++.++ |+.+++... .+.   
T Consensus       212 avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies~ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~  291 (503)
T KOG1291|consen  212 AVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIESAIALFVSFSINLFVISVFTAAGFYNKTILDVAGAC  291 (503)
T ss_pred             HHHHhceeeccchhhhhhhhhcccccCHhhhhhhHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhh
Confidence            999999999999999999999999999965 47999999999999999999999999999999 776665422 211   


Q ss_pred             --CcccccccchHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHH
Q 016122          153 --DQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSL  230 (394)
Q Consensus       153 --~~~~~~~~~l~~a~~~L~~~~G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal  230 (394)
                        +.++..+.|+.+++..|++.+|+++.++|++|+++||||||+|||||||++||||+|||++||.||++||++||+|++
T Consensus       292 ~~~s~~a~~~Dl~~~~~~L~~~~g~~a~~Ifai~lLasGQSstitgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL  371 (503)
T KOG1291|consen  292 LYNSNEADDADLFSAGLLLQCYFGPAALYIFAIGLLASGQSSTITGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTL  371 (503)
T ss_pred             hcCCCcchhhhhHHHHHHHHHHhccHHHHHHHHHHHHCCCcccceeeeeeeEeecccccccchHHHHHHHHHHHHHHhhh
Confidence              123344679999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcChHHHHHHHHHHHHhhhhhHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016122          231 IVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLF  310 (394)
Q Consensus       231 ~v~~~~g~~~~~~Lli~~qvl~sl~LPfalipLl~~~s~~~iMG~~~n~~~~~il~~~~~~~i~~lni~~v~~~~~~~~~  310 (394)
                      ++++..|..+..++++++||+||+||||+++|+++|+|+|++||+|+|+...+..+|....+++.+|.|++++. .....
T Consensus       372 ~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r~IM~~~~~~~~~~~~~~~~~~~~~~in~y~~v~~-~~~~~  450 (503)
T KOG1291|consen  372 IVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFTSSRKIMGVFKNGLVTEELTWTVAALVLGINGYFLVSF-FWSLV  450 (503)
T ss_pred             heeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhhccHHHhhhhccCccceeeeehheeeeeeeeeEEeeee-hhhhc
Confidence            99999998899999999999999999999999999999999999999999999999999999999999999974 44444


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 016122          311 HGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNK  346 (394)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~yl~~~~~~  346 (394)
                      +.+....      ..+....+.|++++.||..+..+
T Consensus       451 ~~~~~~~------~~~~~~~~~y~~~i~yL~~~~l~  480 (503)
T KOG1291|consen  451 GKHSKIV------VTVNVWTLAYLAFILYLAATCLN  480 (503)
T ss_pred             CCceeee------hhHHHHHHHHHHHHHHHHHHHHH
Confidence            4332211      22334467899999999987643

>PRK00701 manganese transport protein MntH; Reviewed	Back alignment and domain information

>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters	Back alignment and domain information

>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2	Back alignment and domain information

>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]	Back alignment and domain information

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]	Back alignment and domain information

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups	Back alignment and domain information

>PRK15132 tyrosine transporter TyrP; Provisional	Back alignment and domain information

>TIGR00835 agcS amino acid carrier protein	Back alignment and domain information

>PRK10483 tryptophan permease; Provisional	Back alignment and domain information

>TIGR00837 araaP aromatic amino acid transport protein	Back alignment and domain information

>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses	Back alignment and domain information

>PRK11375 allantoin permease; Provisional	Back alignment and domain information

>TIGR00907 2A0304 amino acid permease (GABA permease)	Back alignment and domain information

>TIGR00813 sss transporter, SSS family	Back alignment and domain information

>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]	Back alignment and domain information

>COG3949 Uncharacterized membrane protein [Function unknown]	Back alignment and domain information

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family	Back alignment and domain information

>PRK09442 panF sodium/panthothenate symporter; Provisional	Back alignment and domain information

>PRK15049 L-asparagine permease; Provisional	Back alignment and domain information

>PRK15419 proline:sodium symporter PutP; Provisional	Back alignment and domain information

>PRK13629 threonine/serine transporter TdcC; Provisional	Back alignment and domain information

>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional	Back alignment and domain information

>TIGR00796 livcs branched-chain amino acid uptake carrier	Back alignment and domain information

>PRK09664 tryptophan permease TnaB; Provisional	Back alignment and domain information

>TIGR00814 stp serine transporter	Back alignment and domain information

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells	Back alignment and domain information

>PRK11357 frlA putative fructoselysine transporter; Provisional	Back alignment and domain information

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))	Back alignment and domain information

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A	Back alignment and domain information

>TIGR00930 2a30 K-Cl cotransporter	Back alignment and domain information

>PRK11387 S-methylmethionine transporter; Provisional	Back alignment and domain information

>TIGR02119 panF sodium/pantothenate symporter	Back alignment and domain information

>PRK12488 acetate permease; Provisional	Back alignment and domain information

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX	Back alignment and domain information

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines	Back alignment and domain information

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter	Back alignment and domain information

>TIGR00913 2A0310 amino acid permease (yeast)	Back alignment and domain information

>PRK11021 putative transporter; Provisional	Back alignment and domain information

>TIGR00908 2A0305 ethanolamine permease	Back alignment and domain information

>PRK10484 putative transporter; Provisional	Back alignment and domain information

>TIGR02121 Na_Pro_sym sodium/proline symporter	Back alignment and domain information

>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00909 2A0306 amino acid transporter	Back alignment and domain information

>TIGR00911 2A0308 L-type amino acid transporter	Back alignment and domain information

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter	Back alignment and domain information

>PRK11017 codB cytosine permease; Provisional	Back alignment and domain information

>TIGR02711 symport_actP cation/acetate symporter ActP	Back alignment and domain information

>PRK10238 aromatic amino acid transporter; Provisional	Back alignment and domain information

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell	Back alignment and domain information

>PRK10836 lysine transporter; Provisional	Back alignment and domain information

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		394
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 47/275 (17%), Positives = 83/275 (30%), Gaps = 84/275 (30%)

Query: 2   LFKIPVWIGVLL---TGF--STLILLALQQYGV-RKLEFLIAFLVFTMAGCFFAELGYAK 55
           L ++     VL+    G   + + L     Y V  K++F I +L   +  C         
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL--NLKNCN-------S 194

Query: 56  PEAK-EVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEA 114
           PE   E+L  L   Q+  N                      S    S  I   + SI+  
Sbjct: 195 PETVLEMLQKLLY-QIDPN--------------------WTSRSDHSSNIKLRIHSIQAE 233

Query: 115 CRFYMIESGF--ALAV-----------AF------LI---NVSVI-SVSGAVCSSSNINP 151
            R  +    +   L V           AF      L+      V   +S A  +  +++ 
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 152 EDQASCKDLDLNKASFLLRNVLGSWSSKL---------FAIALL-ASGQSSTITGTYAGQ 201
                   L  ++   LL   L      L           ++++  S +    T      
Sbjct: 294 HSMT----LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 202 Y-------VMQGFLDLRLKPW-LRNFLTRCLAIVP 228
                   +++  L++ L+P   R    R L++ P
Sbjct: 350 VNCDKLTTIIESSLNV-LEPAEYRKMFDR-LSVFP 382

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		394
2jln_A		501	MHP1; hydantoin, transporter, membrane protein, nu	97.81
3gia_A		444	Uncharacterized protein MJ0609; membrane protein,	97.57
4djk_A		511	Probable glutamate/gamma-aminobutyrate antiporter;	97.2
3l1l_A		445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	96.76
2a65_A		519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	95.7
3dh4_A		530	Sodium/glucose cotransporter; membrane protein, sy	93.68

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A	Back alignment and structure

Probab=97.81  E-value=0.014  Score=60.12  Aligned_cols=105  Identities=12%  Similarity=0.079  Sum_probs=54.9

Q ss_pred             HHHHHhhhhhhHh-hhhhHHHHHhhhhcCCccchhhhhhhhhhhHHHHHHHHHhcCCcChHHHHHHHHHHHHhhhhhHHH
Q 016122          183 IALLASGQSSTIT-GTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALV  261 (394)
Q Consensus       183 igLlaAg~sStit-~t~agq~vm~gfl~~~~~~~~r~l~tr~iaiiPal~v~~~~g~~~~~~Lli~~qvl~sl~LPfali  261 (394)
                      +.++.+..+.... +.|++...++......++++...+   .++++ +.+++. .+  ....+..+...+..+.-|...+
T Consensus       304 ~~~~la~i~tn~~~n~ys~~~~l~~~~~~~i~~~~~~~---i~~vi-~~~i~~-~~--~~~~f~~FL~~lg~~l~P~~gI  376 (501)
T 2jln_A          304 VFVLLATWSTNPAANLLSPAYTLCSTFPRVFTFKTGVI---VSAVV-GLLMMP-WQ--FAGVLNTFLNLLASALGPLAGI  376 (501)
T ss_dssp             HHHHHHHHTTHHHHHTHHHHHHHHHHSTTTCCHHHHHH---HHHHH-HHHTCG-GG--THHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhCccccchhHHHH---HHHHH-HHHHHH-HH--hHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555565564 789988888888654323221111   11111 111111 11  2356777888888888898888


Q ss_pred             HHHHH--hcCCcc--------cCCC---CchHHHHHHHHHHHHHHH
Q 016122          262 PLLKF--TSSKVK--------MGMH---ANSIAITAITWIIGSLIM  294 (394)
Q Consensus       262 pLl~~--~s~~~i--------MG~~---~n~~~~~il~~~~~~~i~  294 (394)
                      -+.=+  .+++++        -|+|   +.-.|.-+++|++..++.
T Consensus       377 ~l~Dy~i~rr~~~~~~~l~~~~g~y~y~~g~n~~a~~a~~~G~~~~  422 (501)
T 2jln_A          377 MISDYFLVRRRRISLHDLYRTKGIYTYWRGVNWVALAVYAVALAVS  422 (501)
T ss_dssp             HHHHHHTTSTTCCCHHHHTBSSSTTCTBTTBCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcccCChHHhhCCCCccccCCCCCHHHHHHHHHHHHHH
Confidence            76522  233322        1334   222345566666655443

PyMOL of 2jln

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C	Back alignment and structure

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A	Back alignment and structure

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A	Back alignment and structure

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...	Back alignment and structure

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		394
d2a65a1		509	Na(+):neurotransmitter symporter homologue LeuT {A	95.91

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.91  E-value=0.54  Score=45.66  Aligned_cols=36  Identities=19%  Similarity=0.211  Sum_probs=24.2

Q ss_pred             hhHHHHHHHHHHHHhhhhhhHhhhhhHHHHHhhhhc
Q 016122          174 GSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLD  209 (394)
Q Consensus       174 G~~a~~ifaigLlaAg~sStit~t~agq~vm~gfl~  209 (394)
                      |+.-..+|-+.++.+|.+|.++..-.--...++-++
T Consensus       333 ~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l~d~~~  368 (509)
T d2a65a1         333 GTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELK  368 (509)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccchhHHHHHhcC
Confidence            445556788889999999987666655544444333

PyMOL of d2a65a1