Citrus Sinensis ID: 016123

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
Protein Sequence
MGFEVSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHcccccHHHcHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHccccccEEEHHHHHHHHHHHHHHHHcHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEccccccHHHHHHHHHHHHHHHccccccHcccHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHEEEHHHEHHccccHHHHHHHHHHHHcccccccccEEEEHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHcHHHccccccEccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHcc
Coil and Loop (DISEMBL)
MGFEVSYTSSAGKWLGFVTAVWVQAIsgnnytfsnYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAglasdripaPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCmggnsttwMNTAVLVTCIRNfrrnrgpvsgilKGYVGLSTAIFTDLCsalfaddpaKFLFMLAIVPFVVCLGAIFFlrettpastvdeekEEAKYFSIINTVAIVVALYLQVYdflpnkseTLALIFSGILIILLaspvaipvySFIKswnlnrkrtepdveeqqvvepllngettgteeVVAVEDTVVAVVAVEevkrrpvlgedhtIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGriisgsvseyfik
Flexible Loop (DISEMBL)
MGFEVSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNfrrnrgpvsGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRettpastvdeeKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSwnlnrkrtepdveeqqvvepllngettgteevvavEDTVVAVVAveevkrrpvlgedhTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRiisgsvseyfik
Low Complexity Region (SEG)
MGFEVSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDveeqqvvePLLNGettgteevvavedtvvavvaveevKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK
Disordered region (IsUnstruct)
******YTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPA********EAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNR************VEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYF**
Disordered Region (DISOPRED)
*************WLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSF*********************************************************GEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK
Disordered Region (DISEMBL)
*********SAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRK*********QVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK
Disordered Region (DISPRO)
**FEVSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPA*****EKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN******************************************VEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGFEVSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	394	2.2.26 [Sep-21-2011]
Q03795	547	Uncharacterized membrane	yes	no	0.913	0.658	0.233	2e-06
Q5AXV1	615	Probable transporter mch1	yes	no	0.436	0.279	0.282	5e-05
Q9P3K8	598	Probable transporter MCH1	N/A	no	0.751	0.494	0.221	0.0004

>sp|Q03795|YM30_YEAST Uncharacterized membrane protein YMR155W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR155W PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 169/406 (41%), Gaps = 46/406 (11%)

Query: 8   TSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GL 66
           T+  G    FV    V   +G  Y FS Y+  L +  ++     + LS    IG +  G+
Sbjct: 13  TNHFGHLKSFVGGNVVALGAGTPYLFSFYAPQLLSKCHIPVSASSKLSFSLTIGSSLMGI 72

Query: 67  LAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMN 126
           LAG+  DR P  +  LIGS+   + Y    L +  K +  S + + + L + G  +    
Sbjct: 73  LAGIVVDRSPK-LSCLIGSMCVFIAY--LILNLCYKHEWSSTFLISLSLVLIGYGSVSGF 129

Query: 127 TAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAK-FLFMLAIVPFVV 185
            A +     NF ++RG          GLS  +F+ LCS LF ++    F+F++     ++
Sbjct: 130 YASVKCANTNFPQHRGTAGAFPVSLYGLSGMVFSYLCSKLFGENIEHVFIFLMVACGCMI 189

Query: 186 CLG----AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLAL 241
            +G     IF   E   AS  + E ++++      T   +V LY    D++ +   +   
Sbjct: 190 LVGYFSLDIFSNAEGDDASIKEWELQKSR-----ETDDNIVPLYENSNDYIGSPVRS--- 241

Query: 242 IFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVV-EPLLNGETTGTEEVVAV 300
                     +SP     Y+   S N         +E++Q+   PLL+  +  T+     
Sbjct: 242 ----------SSPATYETYAL--SDNFQETSEFFALEDRQLSNRPLLSPSSPHTKYDFED 289

Query: 301 EDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDF--WILFVSFLCGVG------TGLAVM 352
           E+T    V     ++   L     +F+++ +  F  + + +  L GVG       G  V 
Sbjct: 290 ENTSKNTVGENSAQKSMRL----HVFQSLKSSTFIGYYIVLGILQGVGLMYIYSVGFMVQ 345

Query: 353 NNMGQIGLALGYVDV----SIFVSLTSIWGFFGRIISGSVSEYFIK 394
             +    L    ++     S+ V+L S+  F GR+ SG +S++ +K
Sbjct: 346 AQVSTPPLNQLPINAEKIQSLQVTLLSLLSFCGRLSSGPISDFLVK 391

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q5AXV1|MCH1_EMENI Probable transporter mch1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=mch1 PE=3 SV=2

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 85/205 (41%), Gaps = 33/205 (16%)

Query: 27  SGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGL-LAGLASDRI-PAPIILLIG 84
           +G+   FS Y   L T +N TQL +N +S+   I     + LAG   DR  P+P+ L  G
Sbjct: 94  AGSITAFSLYGPLLLTRLNYTQLRVNEVSIAAGISMYLPVSLAGYLCDRYSPSPLTLFAG 153

Query: 85  SLEGLVGYGAQWLVVSRKIQPLS------YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR 138
              GL GY     V      P +      +W M V     G +T  M  A + TC +NF 
Sbjct: 154 IAFGL-GYSLAAFVYKSGPPPDAGGNGWPFWVMVVAFIAIGVATCSMYLAAVTTCAKNFG 212

Query: 139 RNRGP------------VSGILKGYVG---LSTAIFTDLCSALFADDPAKFLFMLAIVPF 183
           R +              +SG+ +  VG   L   +    C  +   D  K+   LAI+  
Sbjct: 213 RGKHKGIILAVPIAAFGLSGMWQSQVGTYFLCERLKDSNCGDV---DVYKYFLFLAILLL 269

Query: 184 VVCLGAIFFLRETTPASTVDEEKEE 208
            + +   F LR       VD+E+E+
Sbjct: 270 TIGVIGTFALR------IVDDEEEK 288

Probable transporter.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q9P3K8|MCH1_NEUCR Probable transporter MCH1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mch-1 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 137/384 (35%), Gaps = 88/384 (22%)

Query: 9   SSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGL-L 67
           +++ + L F +A+     +G+   FS Y    +  ++ TQ E+N LS          + L
Sbjct: 52  AASARNLSFASALLSSLCAGSITIFSMYGHIFQERLHYTQFEVNGLSSAASFATYMPVPL 111

Query: 68  AGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ--------------PLSYWQMCV 113
            G   DR+    +  + +L    GYG    V  R+                 L+Y  M  
Sbjct: 112 LGYMCDRVGPGPLSFVSALFFAAGYGLAAGVYKREADGAALGNGADGEDTGRLAYAAMIT 171

Query: 114 FLCMGGNSTTWMNTAVLVTCIRNFRR--NRGPVSGILKGYVGLSTAIFTDLCSAL----F 167
                G  T  M  + + TC +NF R  +RG    +     GLS    + L S +    F
Sbjct: 172 AFVFIGVGTCSMYMSAVATCAKNFGRGKHRGLALAVPIAAFGLSGMWQSQLGSRVFYERF 231

Query: 168 AD------DPAKFLFMLAIVPFVV-CLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAI 220
           AD      D   F   L ++ FVV CLG  F L+       +DE  EE           +
Sbjct: 232 ADGTKGDLDVFHFFIFLGVLLFVVGCLG-TFGLKIVDEEDLIDEAVEE-----------L 279

Query: 221 VVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNR------KRTE 274
             + YL    FL                                SW  +R      +++ 
Sbjct: 280 ERSGYLDGSTFLQG------------------------------SWTADRPGYGAIEQSP 309

Query: 275 PDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDF 334
            D+E   +++P      + +EE    ++  +    V   + R  L  DHT+         
Sbjct: 310 LDMESAGILDPSKPDNDSDSEE--EDDNARIKKTWVLNAETRRFL-TDHTM--------- 357

Query: 335 WILFVSFLCGVGTGLAVMNNMGQI 358
           W   + F   +G G A +NN+G +
Sbjct: 358 WCFALGFFLMIGPGEAFINNLGTV 381

Probable transporter.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
224080606	564	predicted protein [Populus trichocarpa]	0.997	0.696	0.746	1e-175
224103219	564	predicted protein [Populus trichocarpa]	0.994	0.695	0.730	1e-173
297798430	567	nodulin family protein [Arabidopsis lyra	0.944	0.656	0.684	1e-156
15236224	567	major facilitator family protein [Arabid	0.944	0.656	0.679	1e-156
46931328	411	At4g34950 [Arabidopsis thaliana]	0.944	0.905	0.679	1e-155
225427985	549	PREDICTED: uncharacterized protein LOC10	0.987	0.708	0.695	1e-155
297836364	545	nodulin family protein [Arabidopsis lyra	0.984	0.711	0.713	1e-151
15227274	546	putative nodulin protein [Arabidopsis th	0.987	0.712	0.711	1e-150
217074484	552	unknown [Medicago truncatula] gi|3884984	0.969	0.692	0.701	1e-150
449458592	540	PREDICTED: uncharacterized protein LOC10	0.936	0.683	0.679	1e-149

>gi|224080606|ref|XP_002306177.1| predicted protein [Populus trichocarpa] gi|222849141|gb|EEE86688.1| predicted protein [Populus trichocarpa]

 Score =  619 bits (1595), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 304/407 (74%), Positives = 347/407 (85%), Gaps = 14/407 (3%)

Query: 1   MGFE--VSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVK 58
           MGF    S + SA KWLGFVTAVWVQAISGNNYTFSNYSDALK+LMNLTQLELNNLSV K
Sbjct: 1   MGFHQTSSISFSATKWLGFVTAVWVQAISGNNYTFSNYSDALKSLMNLTQLELNNLSVAK 60

Query: 59  DIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG 118
           D+GKAFGLLAGLASDR+P P+ILLIGS+EGL+GYG QWLVVS +IQPL YWQMC+FLC+G
Sbjct: 61  DVGKAFGLLAGLASDRLPTPVILLIGSIEGLIGYGTQWLVVSGRIQPLPYWQMCIFLCLG 120

Query: 119 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFML 178
           GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALFA DPAKFL ML
Sbjct: 121 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCAALFAYDPAKFLIML 180

Query: 179 AIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSET 238
           A++PF VCL AI FLRET PA+T++EEKEE+KYF+I N VA++VA+YL  Y F+PN S  
Sbjct: 181 AVIPFAVCLTAIVFLRETPPAATIEEEKEESKYFNIFNAVAVIVAVYLMAYGFIPNPSHA 240

Query: 239 LALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTE-EV 297
           ++L FS IL++LLASP+A PV++FIKSW LNR + + DV E+Q+ EPLL  E    E + 
Sbjct: 241 ISLAFSVILLVLLASPLAAPVHAFIKSWTLNRFKNQADV-ERQIQEPLLIEEKAQEEIQE 299

Query: 298 VAVEDTVVAVV----AVE------EVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT 347
              E++  AVV    AVE      EVKRRPV+GEDHTIFEAM TVDFW+LFVSFLCGVGT
Sbjct: 300 KPAEESASAVVEQPQAVEEEKAAVEVKRRPVIGEDHTIFEAMQTVDFWVLFVSFLCGVGT 359

Query: 348 GLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
           GLAVMNNMGQIGLALGY DVS+F+S+TSIWGFFGRI+SGSVSEY+IK
Sbjct: 360 GLAVMNNMGQIGLALGYADVSLFISMTSIWGFFGRIVSGSVSEYYIK 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103219|ref|XP_002312970.1| predicted protein [Populus trichocarpa] gi|222849378|gb|EEE86925.1| predicted protein [Populus trichocarpa]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 298/408 (73%), Positives = 345/408 (84%), Gaps = 16/408 (3%)

Query: 1   MGF-EVSYTS-SAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVK 58
           MG+ + S TS  A KWLGFVTAVWVQAISGNNYTFSNYSDALKTLM+LTQLELNNLSV K
Sbjct: 1   MGYLQTSSTSFKATKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMSLTQLELNNLSVAK 60

Query: 59  DIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG 118
           D+GKAFGLLAGLASDR+P P+ILLIGS+EGL+GYG QWLVVSR+IQPLSYWQMC+FLC+G
Sbjct: 61  DVGKAFGLLAGLASDRLPTPVILLIGSIEGLIGYGTQWLVVSRRIQPLSYWQMCIFLCLG 120

Query: 119 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFML 178
           GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALFADDPAKFL ML
Sbjct: 121 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCAALFADDPAKFLIML 180

Query: 179 AIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSET 238
           A++PF VCL AI FLRET PA+T++EEKEE+KYF++ N VA++VA+YL  Y F+PN S  
Sbjct: 181 AVIPFAVCLTAIVFLRETPPAATIEEEKEESKYFNLFNVVAVIVAVYLLAYSFIPNPSHV 240

Query: 239 LALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVV 298
           L+ +FS IL++LLASP+A+P ++FI SWNLNR + + DV E+Q+ EPLL  + T  E++ 
Sbjct: 241 LSSVFSLILLVLLASPLAVPAHAFINSWNLNRFKNQEDV-ERQIQEPLLREDKT-QEKIQ 298

Query: 299 AVEDTVVAVVAVEEVK------------RRPVLGEDHTIFEAMWTVDFWILFVSFLCGVG 346
                  A   VE  +            RRPV+GEDHT+FEAM TVDFWILF+SFLCGVG
Sbjct: 299 EKPAEEAAKAVVERTRAVEEEKAVEVVKRRPVIGEDHTVFEAMSTVDFWILFLSFLCGVG 358

Query: 347 TGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
           TGLAVMNNMGQIGLALGY DVS+FVS+TSIWGFFGRIISG+VSEY+IK
Sbjct: 359 TGLAVMNNMGQIGLALGYADVSLFVSMTSIWGFFGRIISGTVSEYYIK 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798430|ref|XP_002867099.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297312935|gb|EFH43358.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 278/406 (68%), Positives = 326/406 (80%), Gaps = 34/406 (8%)

Query: 13  KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
           KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNLTQLELN+LSV KDIGKAFG+LAGLAS
Sbjct: 16  KWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVAKDIGKAFGILAGLAS 75

Query: 73  DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
           DR+  P+ILLIG  EGL+GYG QWLVVSR IQP+ YWQMCVFLCMGGNSTTWMNTAVLVT
Sbjct: 76  DRLSTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCVFLCMGGNSTTWMNTAVLVT 135

Query: 133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
           CIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF  DPA FL +L++VPF VCL A+FF
Sbjct: 136 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFTSDPASFLVLLSVVPFAVCLTAVFF 195

Query: 193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLA 252
           LRE  P++T DE+ EE+KYF++ N VA+VVA+YLQ YD +  K+   ++ F+ IL+ILLA
Sbjct: 196 LREIPPSTTSDEDNEESKYFAVFNIVAVVVAVYLQSYDIIGIKTGAFSIAFASILLILLA 255

Query: 253 SPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAV-- 310
           SP+A+P ++FI+S    +   E DV E ++ EPLL    +G+E  + VE+T+V   A   
Sbjct: 256 SPIAVPFHAFIRS----KDHDEQDV-EGRIDEPLLR---SGSE--IEVEETMVGAAAAAD 305

Query: 311 ------------EEV----------KRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348
                       EEV          K+RPVLGE+HTI EAM TVDFW+LFVSFLCGVGTG
Sbjct: 306 NELPPSLKPLNNEEVENHGNVVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTG 365

Query: 349 LAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
           LAVMNNMGQIGLALGY DVSIFVS+TSIWGFFGRI+SG++SE+FIK
Sbjct: 366 LAVMNNMGQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIK 411

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236224|ref|NP_195221.1| major facilitator family protein [Arabidopsis thaliana] gi|5123712|emb|CAB45456.1| putative protein [Arabidopsis thaliana] gi|7270446|emb|CAB80212.1| putative protein [Arabidopsis thaliana] gi|332661040|gb|AEE86440.1| major facilitator family protein [Arabidopsis thaliana]

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 276/406 (67%), Positives = 325/406 (80%), Gaps = 34/406 (8%)

Query: 13  KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
           KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNLTQLELN+LSV KD+GKAFG+LAGLAS
Sbjct: 16  KWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVAKDVGKAFGILAGLAS 75

Query: 73  DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
           DR+  P+ILLIGS EGL+GYG QWLVVSR IQP+ YWQMCVFLCMGGNSTTWMNTAVLVT
Sbjct: 76  DRLSTPVILLIGSFEGLLGYGVQWLVVSRTIQPIPYWQMCVFLCMGGNSTTWMNTAVLVT 135

Query: 133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
           CIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF+ DPA FL +L++VPF VCL A+FF
Sbjct: 136 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVLLSVVPFAVCLTAVFF 195

Query: 193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLA 252
           LRE  P++T  E+ EE+KYF++ N VA+VVA+YLQ YD +  K+   ++ F+ IL+ILLA
Sbjct: 196 LREIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDIIGIKTGAFSIAFASILLILLA 255

Query: 253 SPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVA--- 309
           SPVA+P ++FI+S    +   E DV E ++ EPLL    +G+E  + VE+T+V   A   
Sbjct: 256 SPVAVPFHAFIRS----KVHDEQDV-EGRIDEPLLR---SGSE--IEVEETIVGAAAAAD 305

Query: 310 ---------------------VEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348
                                V   K+RPVLGE+HTI EAM TVDFW+LFVSFLCGVGTG
Sbjct: 306 NELPPSLKPLSNEEEENHGTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTG 365

Query: 349 LAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
           LAVMNNMGQIGLALGY DVSIFVS+TSIWGFFGRI+SG++SE+FIK
Sbjct: 366 LAVMNNMGQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIK 411

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46931328|gb|AAT06468.1| At4g34950 [Arabidopsis thaliana]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/406 (67%), Positives = 325/406 (80%), Gaps = 34/406 (8%)

Query: 13  KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
           KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNLTQLELN+LSV KD+GKAFG+LAGLAS
Sbjct: 16  KWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVAKDVGKAFGILAGLAS 75

Query: 73  DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
           DR+  P+ILLIGS EGL+GYG QWLVVSR IQP+ YWQMCVFLCMGGNSTTWMNTAVLVT
Sbjct: 76  DRLSTPVILLIGSFEGLLGYGVQWLVVSRTIQPIPYWQMCVFLCMGGNSTTWMNTAVLVT 135

Query: 133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
           CIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF+ DPA FL +L++VPF VCL A+FF
Sbjct: 136 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVLLSVVPFSVCLTAVFF 195

Query: 193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLA 252
           LRE  P++T  E+ EE+KYF++ N VA+VVA+YLQ YD +  K+   ++ F+ IL+ILLA
Sbjct: 196 LREIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDIIGIKTGAFSIAFASILLILLA 255

Query: 253 SPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVA--- 309
           SPVA+P ++FI+S    +   E DV E ++ EPLL    +G+E  + VE+T+V   A   
Sbjct: 256 SPVAVPFHAFIRS----KVHDEQDV-EGRIDEPLLR---SGSE--IEVEETIVGAAAAAD 305

Query: 310 ---------------------VEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG 348
                                V   K+RPVLGE+HTI EAM TVDFW+LFVSFLCGVGTG
Sbjct: 306 NELPPSLKPLSNEEEENHGTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTG 365

Query: 349 LAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
           LAVMNNMGQIGLALGY DVSIFVS+TSIWGFFGRI+SG++SE+FIK
Sbjct: 366 LAVMNNMGQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIK 411

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427985|ref|XP_002277695.1| PREDICTED: uncharacterized protein LOC100260696 [Vitis vinifera] gi|297744630|emb|CBI37892.3| unnamed protein product [Vitis vinifera]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/394 (69%), Positives = 320/394 (81%), Gaps = 5/394 (1%)

Query: 1   MGFEVSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDI 60
           MGF +S  SS+ KWLGFVTAVWVQ+ISGNNYTFSNYSDALK+LM LTQL+LNNLSV KD+
Sbjct: 1   MGFHLSPASSSRKWLGFVTAVWVQSISGNNYTFSNYSDALKSLMALTQLQLNNLSVAKDV 60

Query: 61  GKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGN 120
           GKAFGLL+GLASDR+  P++LLIGS+EGLVGYG QWLVVSRKIQPL YWQMC+FLCMGGN
Sbjct: 61  GKAFGLLSGLASDRLSTPMMLLIGSIEGLVGYGVQWLVVSRKIQPLPYWQMCIFLCMGGN 120

Query: 121 STTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAI 180
           STTWMNTAVLVTCIRNFR NRGPVSGILKGYVGLSTAIFTDLC+ALFADDPA FL MLAI
Sbjct: 121 STTWMNTAVLVTCIRNFRTNRGPVSGILKGYVGLSTAIFTDLCTALFADDPAIFLLMLAI 180

Query: 181 VPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLA 240
           +P +VCL AI FLRE   +ST   EKEE K+F++ N VA+V+A+YL  +D   + S  L+
Sbjct: 181 IPLLVCLSAILFLREVPSSSTAAGEKEETKFFNLFNIVAVVLAVYLLTFDVTGSHSRILS 240

Query: 241 LIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAV 300
             F+ +L+ LLA P++IP+Y  ++ +N +  +   D+ E  + E LL+  +       A 
Sbjct: 241 QAFAVVLLFLLACPLSIPLYFMLQDFNRSGSKPSSDI-EGLITETLLSQNSQPEMAAPAS 299

Query: 301 EDTVVAVVAVEEVKR-RPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIG 359
           E+ V  VV   E+KR RP +GEDHTI EA+ T DFWILF SFLCGVGTGLAVMNNMGQ+G
Sbjct: 300 EEKVEPVV---EIKRPRPSIGEDHTIIEAISTTDFWILFASFLCGVGTGLAVMNNMGQMG 356

Query: 360 LALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFI 393
           LALGYVDVSIFVSLTSIWGFFGRI+SGSVSEYFI
Sbjct: 357 LALGYVDVSIFVSLTSIWGFFGRILSGSVSEYFI 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836364|ref|XP_002886064.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297331904|gb|EFH62323.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 282/395 (71%), Positives = 327/395 (82%), Gaps = 7/395 (1%)

Query: 1   MGFEVSYTSSAG-KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKD 59
           MGF+ S +SS+  KWLGFVTAVWVQAISGNNYTFSNYS ALK+LMNL QLELNNLSV KD
Sbjct: 1   MGFQRSISSSSALKWLGFVTAVWVQAISGNNYTFSNYSGALKSLMNLNQLELNNLSVAKD 60

Query: 60  IGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG 119
           +GKAFG+LAGLASDR+P P+ILLIG  EGL+GYG QWLVVSR IQP+ YWQMC+FLCMGG
Sbjct: 61  VGKAFGILAGLASDRLPTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCIFLCMGG 120

Query: 120 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLA 179
           NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF++DPA FL +LA
Sbjct: 121 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFSNDPASFLVLLA 180

Query: 180 IVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETL 239
           ++PF VCL A+FFLRE +PAS+  EE EE +YF+I N VA+VVA+YLQ YD +  K+   
Sbjct: 181 VIPFAVCLTAVFFLREISPASSAAEENEETRYFTIFNIVAVVVAVYLQSYDIIGIKTGVF 240

Query: 240 ALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVA 299
           ++ F+ IL+ LLASP+AIP +SFIKS N      E D  E ++ EPLL  E    E  V 
Sbjct: 241 SVAFASILLFLLASPIAIPFHSFIKSLN----HGEQDDLEGRIQEPLLRSEIAAAEREVV 296

Query: 300 VEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIG 359
           V   V A   V+  K++PVLGEDHTI EA+ TVDFW+LFVSFLCGVGTGLAVMNNMGQIG
Sbjct: 297 VVAAVAAEQEVK--KKKPVLGEDHTIMEAILTVDFWVLFVSFLCGVGTGLAVMNNMGQIG 354

Query: 360 LALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
           LALGY +VSIFVS+TSIWGFFGRI+SG++SEYF+K
Sbjct: 355 LALGYTNVSIFVSMTSIWGFFGRILSGTLSEYFLK 389

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227274|ref|NP_179257.1| putative nodulin protein [Arabidopsis thaliana] gi|4581109|gb|AAD24599.1| nodulin-like protein [Arabidopsis thaliana] gi|17979283|gb|AAL49867.1| putative nodulin protein [Arabidopsis thaliana] gi|20465250|gb|AAM19945.1| At2g16660/T24I21.7 [Arabidopsis thaliana] gi|23463081|gb|AAN33210.1| At2g16660/T24I21.7 [Arabidopsis thaliana] gi|330251429|gb|AEC06523.1| putative nodulin protein [Arabidopsis thaliana]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 281/395 (71%), Positives = 327/395 (82%), Gaps = 6/395 (1%)

Query: 1   MGFEVSYTSSAG-KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKD 59
           MGF+ S +SS+  KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNL QLELNNLSV KD
Sbjct: 1   MGFQRSISSSSALKWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLNQLELNNLSVAKD 60

Query: 60  IGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG 119
           +GKAFG+LAGLASDR+P P+ILLIG  EGL+GYG QWLVVSR IQP+ YWQMC+FLCMGG
Sbjct: 61  VGKAFGILAGLASDRLPTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCIFLCMGG 120

Query: 120 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLA 179
           NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF++DPA FL +LA
Sbjct: 121 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFSNDPASFLVLLA 180

Query: 180 IVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETL 239
           +VPF VCL A+FFLRE  PAS+  EE EE +YF+I N VA+VVA+YLQ YD +  K+   
Sbjct: 181 VVPFAVCLTAVFFLREIPPASSAAEENEETRYFTIFNIVAVVVAVYLQSYDIIGIKTGVF 240

Query: 240 ALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVA 299
           ++ F+ IL+ LLASP+AIP +SFIKS N      E D  E ++ EPLL  E    E+ V 
Sbjct: 241 SVAFASILLFLLASPIAIPFHSFIKSLNYG----EQDDLEGRIQEPLLRSEIAAAEKEVI 296

Query: 300 VEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIG 359
           V    VA    E+ +++PVLGEDHTI EA+ TVDFW+LFVSFLCGVGTGLAVMNNMGQIG
Sbjct: 297 VV-AAVAAEEEEKKRKKPVLGEDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIG 355

Query: 360 LALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
           LALGY +VSIFVS+TSIWGFFGRI+SG++SEYF+K
Sbjct: 356 LALGYTNVSIFVSMTSIWGFFGRILSGTLSEYFLK 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074484|gb|ACJ85602.1| unknown [Medicago truncatula] gi|388498440|gb|AFK37286.1| unknown [Medicago truncatula]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 272/388 (70%), Positives = 315/388 (81%), Gaps = 6/388 (1%)

Query: 9   SSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLA 68
           S+A KW GFV AVW+QAISGNNYTFSNYSDALK+LM+LTQL+LNNLSV KD+GKAFGLLA
Sbjct: 11  STATKWFGFVAAVWIQAISGNNYTFSNYSDALKSLMHLTQLQLNNLSVAKDVGKAFGLLA 70

Query: 69  GLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTA 128
           GLASDR+P   ILLIGS EGL+GYG QWLVV + IQPL YWQMCVFLCMGGNSTTWMNTA
Sbjct: 71  GLASDRLPTWAILLIGSFEGLIGYGVQWLVVGQYIQPLPYWQMCVFLCMGGNSTTWMNTA 130

Query: 129 VLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG 188
           VLVTCIRNFRRNRGPVSGILKGYVGLSTAIFT+LCSAL ADDPA FL  LA++PF+VCL 
Sbjct: 131 VLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTNLCSALVADDPAFFLLTLALIPFIVCLT 190

Query: 189 AIFFLRETTPA--STVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI 246
            +FFLRE   A  +T  E+ EE+KYF I N VA+V+A+YL  Y F+PN +  ++ +F  +
Sbjct: 191 GVFFLREVPVAKTTTAAEDSEESKYFGICNAVAVVLAVYLLAYGFVPNANTLVSRVFVAV 250

Query: 247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVA 306
           L++LLASP+ IPVY++ K    N  R   DVE Q+V EPLL     G+E    V D +VA
Sbjct: 251 LLVLLASPLGIPVYAYFK--GRNSGRDGGDVEGQRVREPLLQNGEKGSE--TTVTDALVA 306

Query: 307 VVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVD 366
              V  +K +P +GE+HTI E M ++DFWILFVSFLCGVGTGLAVMNNMGQIGLALGY D
Sbjct: 307 ETEVVVIKGQPAIGEEHTIMEVMKSLDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYTD 366

Query: 367 VSIFVSLTSIWGFFGRIISGSVSEYFIK 394
           VS+FVSLTSIWGFFGRI+SGSVSE+FIK
Sbjct: 367 VSLFVSLTSIWGFFGRIVSGSVSEHFIK 394

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458592|ref|XP_004147031.1| PREDICTED: uncharacterized protein LOC101216743 [Cucumis sativus]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/384 (67%), Positives = 314/384 (81%), Gaps = 15/384 (3%)

Query: 13  KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
           KWLGFV+AVWVQAISGNNYTFSNYSDALK+LMNLTQL+LNNLSV KD+GKAFGLLAG+AS
Sbjct: 14  KWLGFVSAVWVQAISGNNYTFSNYSDALKSLMNLTQLQLNNLSVAKDVGKAFGLLAGIAS 73

Query: 73  DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
           D+ P  +ILLIGS+EGLVGYG QWLVVSR+I PL YWQMC+FLCMGGNSTTWMNTAVLVT
Sbjct: 74  DKFPTWVILLIGSVEGLVGYGTQWLVVSRRISPLPYWQMCIFLCMGGNSTTWMNTAVLVT 133

Query: 133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
           CIRNFR+NRGPVSGILKGYVGLSTAIFTDLC ALF+ DP+ FL ML++VP  VCL A+FF
Sbjct: 134 CIRNFRKNRGPVSGILKGYVGLSTAIFTDLCFALFSSDPSSFLLMLSLVPLAVCLFAMFF 193

Query: 193 LRETTPASTVD--EEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIIL 250
           LRE    +T+   + ++E+ YFS+ N +A+VVA+YL  +DF+ N    ++ ++S  L+IL
Sbjct: 194 LREIPTQTTITAADTQQESNYFSVFNALAVVVAVYLLCFDFVKNSGRLISQLYSIGLLIL 253

Query: 251 LASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAV 310
           L SP+ IP+YSF KSWN  R R   D+EE  V E ++ G         AV++       +
Sbjct: 254 LGSPLIIPIYSFFKSWNSIRSRL--DLEEPLVKEEVVTG---------AVKEEAGETAVI 302

Query: 311 EEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDVSIF 370
           E+  R PV+GE+HTIFEA+ T+DFW+LFVSFLCGVGTGLAVMNNMGQIGLALGY DVS+F
Sbjct: 303 EQ--RAPVIGEEHTIFEAVRTIDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYADVSMF 360

Query: 371 VSLTSIWGFFGRIISGSVSEYFIK 394
           VSLTSIWGFFGRI+SG++SE+F+K
Sbjct: 361 VSLTSIWGFFGRILSGTISEHFLK 384

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
TAIR|locus:2059829	546	AT2G16660 [Arabidopsis thalian	0.987	0.712	0.691	2.8e-144
TAIR|locus:2116855	567	AT4G34950 [Arabidopsis thalian	1.0	0.694	0.654	2.7e-139
TAIR|locus:2078643	584	AT3G01930 [Arabidopsis thalian	0.619	0.417	0.374	6.1e-64
TAIR|locus:2174683	579	AT5G14120 [Arabidopsis thalian	0.657	0.447	0.337	8.8e-61
TAIR|locus:2159752	540	AT5G50520 [Arabidopsis thalian	0.662	0.483	0.344	3.3e-59
TAIR|locus:2832385	540	AT5G50630 [Arabidopsis thalian	0.662	0.483	0.344	3.3e-59
TAIR|locus:2046238	577	AT2G28120 [Arabidopsis thalian	0.642	0.438	0.330	1.8e-58
TAIR|locus:2056103	601	AT2G39210 "AT2G39210" [Arabido	0.637	0.417	0.352	6.5e-58
TAIR|locus:2198938	561	AT1G80530 "AT1G80530" [Arabido	0.974	0.684	0.332	5.3e-56
TAIR|locus:2040809	525	AT2G34350 [Arabidopsis thalian	0.614	0.460	0.320	1.7e-49

TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)]

 Score = 1410 (501.4 bits), Expect = 2.8e-144, P = 2.8e-144
 Identities = 273/395 (69%), Positives = 313/395 (79%)

Query:     1 MGFEVSYTSSAG-KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKD 59
             MGF+ S +SS+  KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNL QLELNNLSV KD
Sbjct:     1 MGFQRSISSSSALKWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLNQLELNNLSVAKD 60

Query:    60 IGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG 119
             +GKAFG+LAGLASDR+P P+ILLIG  EGL+GYG QWLVVSR IQP+ YWQMC+FLCMGG
Sbjct:    61 VGKAFGILAGLASDRLPTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCIFLCMGG 120

Query:   120 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLA 179
             NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF++DPA FL +LA
Sbjct:   121 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFSNDPASFLVLLA 180

Query:   180 IVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETL 239
             +VPF VCL A+FFLRE  PAS+  EE EE +YF+I N VA+VVA+YLQ YD +  K+   
Sbjct:   181 VVPFAVCLTAVFFLREIPPASSAAEENEETRYFTIFNIVAVVVAVYLQSYDIIGIKTGVF 240

Query:   240 ALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDXXXXXXXXPLLNGXXXXXXXXXX 299
             ++ F+ IL+ LLASP+AIP +SFIKS N      E D        PLL            
Sbjct:   241 SVAFASILLFLLASPIAIPFHSFIKSLNYG----EQDDLEGRIQEPLLRSEIAAAEKEVI 296

Query:   300 XXXXXXXXXXXXXXKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIG 359
                           K+ PVLGEDHTI EA+ TVDFW+LFVSFLCGVGTGLAVMNNMGQIG
Sbjct:   297 VVAAVAAEEEEKKRKK-PVLGEDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIG 355

Query:   360 LALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
             LALGY +VSIFVS+TSIWGFFGRI+SG++SEYF+K
Sbjct:   356 LALGYTNVSIFVSMTSIWGFFGRILSGTLSEYFLK 390

GO:0009507 "chloroplast" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)]

 Score = 1363 (484.9 bits), Expect = 2.7e-139, P = 2.7e-139
 Identities = 269/411 (65%), Positives = 316/411 (76%)

Query:     1 MGFEVSYTSSAG---KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVV 57
             MGF  S +SS+    KWLGFVTAVWVQ+ISGNNYTFSNYS ALK+LMNLTQLELN+LSV 
Sbjct:     1 MGFGTSSSSSSSSALKWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVA 60

Query:    58 KDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCM 117
             KD+GKAFG+LAGLASDR+  P+ILLIGS EGL+GYG QWLVVSR IQP+ YWQMCVFLCM
Sbjct:    61 KDVGKAFGILAGLASDRLSTPVILLIGSFEGLLGYGVQWLVVSRTIQPIPYWQMCVFLCM 120

Query:   118 GGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFM 177
             GGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC+ALF+ DPA FL +
Sbjct:   121 GGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVL 180

Query:   178 LAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSE 237
             L++VPF VCL A+FFLRE  P++T  E+ EE+KYF++ N VA+VVA+YLQ YD +  K+ 
Sbjct:   181 LSVVPFAVCLTAVFFLREIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDIIGIKTG 240

Query:   238 TLALIFSGILIILLASPVAIPVYSFIKS-----WNLNRKRTEP--DXXXXXXXXPLLNGX 290
               ++ F+ IL+ILLASPVA+P ++FI+S      ++  +  EP             + G 
Sbjct:   241 AFSIAFASILLILLASPVAVPFHAFIRSKVHDEQDVEGRIDEPLLRSGSEIEVEETIVGA 300

Query:   291 XXXXXXXX-------XXXXXXXXXXXXXXXKRRPVLGEDHTIFEAMWTVDFWILFVSFLC 343
                                           K+RPVLGE+HTI EAM TVDFW+LFVSFLC
Sbjct:   301 AAAADNELPPSLKPLSNEEEENHGTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLC 360

Query:   344 GVGTGLAVMNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
             GVGTGLAVMNNMGQIGLALGY DVSIFVS+TSIWGFFGRI+SG++SE+FIK
Sbjct:   361 GVGTGLAVMNNMGQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIK 411

GO:0009507 "chloroplast" evidence=ISM

GO:0007623 "circadian rhythm" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
 Identities = 94/251 (37%), Positives = 152/251 (60%)

Query:    13 KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
             +WL FV A+W+Q+ +G  Y F + S  +K+ +N  Q +L+ L V KD+G + G LAG  S
Sbjct:    16 RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQLSRLGVAKDLGDSVGFLAGTLS 75

Query:    73 DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
             + +P    LL+GS++ LVGYG  WL+V+ +   L  W MC+ + +G N  T+ NTA LV+
Sbjct:    76 EILPLWAALLVGSVQNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGETYFNTAALVS 135

Query:   133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
              ++NF ++RGPV GILKG+ GL  AI + + + + + D A  +FM+A+ P VV +  +FF
Sbjct:   136 GVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAPSVVVVPLMFF 195

Query:   193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQ----VYDFLPNKSETLALIFSGILI 248
             +R       +     +A  F++I  V I++A YL     V DF+ + S ++ + F+ +L 
Sbjct:   196 IRPVGGHRQI--RSSDATSFTVIYAVCILLAAYLMAVMLVEDFI-DLSHSIIIAFTVVLF 252

Query:   249 ILLASPVAIPV 259
              +L  P+ IP+
Sbjct:   253 AILLVPIFIPI 263

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
 Identities = 90/267 (33%), Positives = 154/267 (57%)

Query:     5 VSYTSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF 64
             VS+ ++  +WL FV A+W+Q+ +G  Y F + S  +K+ +N  Q EL+ L V KD+G + 
Sbjct:    10 VSFINN--RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKELSRLGVAKDLGDSV 67

Query:    65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTW 124
             G +AG  S+ +P    LL+G+++ L+GYG  WL+V+ +   L  W MCV + +G N  T+
Sbjct:    68 GFIAGTLSEILPLWAALLVGAVQNLIGYGWVWLIVTGRAPILPLWAMCVLIFVGNNGETY 127

Query:   125 MNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV 184
              NT  LV+ ++NF ++RGPV GILKG+ GL  AI + + + + + +PA  + M+A+ P V
Sbjct:   128 FNTGALVSGVQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTPAV 187

Query:   185 VCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNK---SETLAL 241
             V +  +FF+R       +     +   F+ I  V +++A YL     + +    S  +  
Sbjct:   188 VVVCLMFFIRPVGGHKQI--RPTDGASFTFIYGVCLLLAAYLMSVMLIQDLVVVSHNVIT 245

Query:   242 IFSGILIILLASPVAIPVY-SFIKSWN 267
             +F+ +L ++L  P+ +P+  SF    N
Sbjct:   246 VFTIVLFVILVVPILVPIMTSFFTETN 272

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
 Identities = 92/267 (34%), Positives = 150/267 (56%)

Query:    13 KWLGFVTAVWVQAISGNNYTFS-NYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLA 71
             +WL FV A+WVQ+++G  Y F  + S A+KT +   Q ++  L V K++G A G ++G  
Sbjct:    16 RWLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFVSGAL 75

Query:    72 SDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLV 131
             S+  P+ ++LL+G+ + L GYG  WLVV+ ++  L  W + V + +G N  T+ NTA LV
Sbjct:    76 SEVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNTASLV 135

Query:   132 TCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF 191
             +CI NF  +RGPV GILKG+ GLS AI T +         +  + M+A+ P VV L  +F
Sbjct:   136 SCIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFNPSHDSSVILMVALGPPVVVLALLF 195

Query:   192 FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQ---VYDFLPNKSETLALIFSGILI 248
              +R    +   +   ++ ++ +I     +V+A+YL    V   + + ++T+      IL+
Sbjct:   196 IVRPVERSCRTNLRSDDLRFLAIYG-FCVVLAVYLLGLLVLQSVFDMTQTIITTSGAILV 254

Query:   249 ILLASPVAIPVYS-FIKSWNLNRKRTE 274
             I +  PV +P  S FI   N+   + E
Sbjct:   255 IFMVVPVLVPFSSVFISGNNVTSVKPE 281

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
 Identities = 92/267 (34%), Positives = 150/267 (56%)

Query:    13 KWLGFVTAVWVQAISGNNYTFS-NYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLA 71
             +WL FV A+WVQ+++G  Y F  + S A+KT +   Q ++  L V K++G A G ++G  
Sbjct:    16 RWLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFVSGAL 75

Query:    72 SDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLV 131
             S+  P+ ++LL+G+ + L GYG  WLVV+ ++  L  W + V + +G N  T+ NTA LV
Sbjct:    76 SEVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNTASLV 135

Query:   132 TCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF 191
             +CI NF  +RGPV GILKG+ GLS AI T +         +  + M+A+ P VV L  +F
Sbjct:   136 SCIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFNPSHDSSVILMVALGPPVVVLALLF 195

Query:   192 FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQ---VYDFLPNKSETLALIFSGILI 248
              +R    +   +   ++ ++ +I     +V+A+YL    V   + + ++T+      IL+
Sbjct:   196 IVRPVERSCRTNLRSDDLRFLAIYG-FCVVLAVYLLGLLVLQSVFDMTQTIITTSGAILV 254

Query:   249 ILLASPVAIPVYS-FIKSWNLNRKRTE 274
             I +  PV +P  S FI   N+   + E
Sbjct:   255 IFMVVPVLVPFSSVFISGNNVTSVKPE 281

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
 Identities = 86/260 (33%), Positives = 138/260 (53%)

Query:    12 GKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLA 71
             G+W     +  + A +G  Y F  YS  +K+ +   Q  LN L   KD+G   G+L+GL 
Sbjct:    16 GRWFMVFASFLIMACAGATYLFGTYSKDIKSTLGYDQTTLNLLGFFKDLGANVGVLSGLI 75

Query:    72 SDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLV 131
             ++  P   +L IGS    VGY   WL V+ K+     WQMC+++C+G NS  + NT  LV
Sbjct:    76 AEVTPTWFVLTIGSAMNFVGYFMIWLTVTGKVAKPKVWQMCLYICIGANSQNFANTGALV 135

Query:   132 TCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF 191
             TC++NF  +RG + G+LKGYVGLS AIFT L  A++  D    + ++A +P  V L  ++
Sbjct:   136 TCVKNFPESRGVMLGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILLIAWLPAAVSLVFVY 195

Query:   192 FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNK---SETLALIFSGILI 248
              +RE      V +  E + ++  +  ++I +AL+L   +    +   S+      + I  
Sbjct:   196 LIREK---KVVRQRNELSVFYQFLY-ISIFLALFLMAMNIAEKQVHFSKAAYAASATICC 251

Query:   249 ILLASPVAIPVYSFIKSWNL 268
              LL  P+ + V   ++ WN+
Sbjct:   252 ALLFVPLTVSVKQELEVWNM 271

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 6.5e-58, Sum P(2) = 6.5e-58
 Identities = 91/258 (35%), Positives = 136/258 (52%)

Query:    12 GKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLA 71
             G+W  F  ++ + + +G  Y F  YS  +K  +   Q  LN LS  KD+G   G+LAGL 
Sbjct:    20 GRWFMFFGSLLIMSTAGATYMFGIYSGDIKETLGYDQTTLNLLSFFKDLGANVGVLAGLL 79

Query:    72 SDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLV 131
             ++  P   ILLIG++    GY   WL V+ +I     W MC+++C+G NS ++ NT  LV
Sbjct:    80 NEVTPPWFILLIGAILNFFGYFMIWLAVTERISKPQVWHMCLYICVGANSQSFANTGSLV 139

Query:   132 TCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIF 191
             TC++NF  +RG V GILKGYVGLS AI T L  A + +D  + + M+  +P +V      
Sbjct:   140 TCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGEDTKELILMIGWLPAIVSFA--- 196

Query:   192 FLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSG---ILI 248
             FLR T     V  +  E K F     +++ +A +L V   +   S      F G   ++I
Sbjct:   197 FLR-TIRIMKVKRQTNELKVFYNFLYISLGLATFLMVVIIINKLSGFTQSEFGGSAAVVI 255

Query:   249 ILLASPVAIPVYSFIKSW 266
             +LL  P+ + +    K W
Sbjct:   256 VLLLLPIIVVILEEKKLW 273

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 134/403 (33%), Positives = 207/403 (51%)

Query:     8 TSSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLL 67
             + S   W+G   A WVQ  +G+  TF  YS ALK+++  +Q ++  L V  D+G+  GLL
Sbjct:     8 SGSRPPWVGLAAAAWVQVSAGSGSTFPLYSSALKSVLGFSQQQVTILGVACDLGENMGLL 67

Query:    68 AGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNT 127
              G AS+++P   +LLIG+    +G+G  WL VS+ +  L +W + V L +  NS +W  T
Sbjct:    68 PGYASNKLPPWSMLLIGASSCFLGFGVLWLSVSQIVLGLPFWLLFVALALATNSNSWFGT 127

Query:   128 AVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAI-VPFVVC 186
             A LVT +RNF  +RGPV+G+LKGY+G+S A FT L S +        L  L + +P V+C
Sbjct:   128 ASLVTNMRNFPMSRGPVAGLLKGYIGISGAAFTVLFSMVLHHSAMDLLLFLTVGIP-VIC 186

Query:   187 LGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNK---SETLALIF 243
             L  ++F+R   PA+   E+  E  YF+ +   +I+ A YL V   L         L  + 
Sbjct:   187 LTVMYFIRPCIPAT--GEDPSEPMYFAFLLVTSILFAAYLVVTTVLSEVFILPSILKYVL 244

Query:   244 SGILIILLASPVAIPVYSFI-----------KSWNLNRKRTEPDXXXXXXXXPLLN-GXX 291
               I+++LL SP+A+P+   +            S NL ++    +           N G  
Sbjct:   245 VAIMVLLLLSPLAVPIKMTLFRSNAKSSPLGSSDNLAKEEGTHEEPLLTPSTSASNLGPI 304

Query:   292 XXXXXXXXXXXXXXXXXXXXXXKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAV 351
                                   KR+P  GED    +     DFW+L+  +  G+G+G+ V
Sbjct:   305 FEGDDESDMEILLAEAEGAVKKKRKPRRGEDFKFGQVFVKADFWLLWFVYFLGMGSGVTV 364

Query:   352 MNNMGQIGLALGYVDVSIFVSLTSIWGFFGRIISGSVSEYFIK 394
              NN+ QIG A G  D +I + L S + F GR+ SG++SE+F++
Sbjct:   365 SNNLAQIGFAFGIKDTTILLCLFSFFNFIGRLASGAISEHFVR 407

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 1.7e-49, Sum P(2) = 1.7e-49
 Identities = 84/262 (32%), Positives = 140/262 (53%)

Query:    13 KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGL-- 70
             KW+    ++W+Q+ SG +YTF  YS  LK+  +  Q  L+ +SV KDIG   G+L+GL  
Sbjct:     7 KWVAAAASIWIQSFSGASYTFGIYSSVLKSSQSYDQSTLDTVSVYKDIGANVGILSGLFY 66

Query:    71 ---ASDR------IPAP-IILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGN 120
                AS +         P +++ +G L+  VGYG  W+  S  I       MC+F+   G+
Sbjct:    67 TAVASRKSGNGGFFSGPWLVIFVGLLQWFVGYGFIWMATSGVIPRPPVAMMCLFMFFAGH 126

Query:   121 STTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAI 180
                + NTA++VT +RNF    G   GI+KGY+GLS AI   +       DP  ++ +LA+
Sbjct:   127 CQPFFNTAIVVTAVRNFSDYGGTAVGIMKGYLGLSGAILVQMYHIFCGGDPRNYILLLAV 186

Query:   181 VPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPN---KSE 237
             VP ++ L  + F+R  T  + +  +K   K+ + ++ +++++  YL V   + N    S 
Sbjct:   187 VPSLLILTLMPFVR--TYDTVIAGDK---KHLNGLSAISLIIVTYLMVVILVENIIGMSM 241

Query:   238 TLALIFSGILIILLASPVAIPV 259
              + +     L++LLASP+ + V
Sbjct:   242 PMKICSFTFLLLLLASPLLVAV 263

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_IV1441 hypothetical protein (564 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	394
pfam06813	248	pfam06813, Nodulin-like, Nodulin-like	3e-96
PTZ00207	591	PTZ00207, PTZ00207, hypothetical protein; Provisio	5e-10
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	3e-05

>gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like

 Score =  287 bits (736), Expect = 3e-96
 Identities = 111/250 (44%), Positives = 161/250 (64%), Gaps = 5/250 (2%)

Query: 13  KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLAS 72
           +WLG V A+W+Q+ +G NY FS YS ALK+ +  +Q++LN L V KD+GK FG L+GLA+
Sbjct: 1   RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60

Query: 73  DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT 132
           + +P  ++LL+G+  G VGYG QWL V+ KI  L YW +C+ +C+ GNS  W NTA LVT
Sbjct: 61  EYLPPWVVLLVGAAMGFVGYGVQWLAVTGKIPGLPYWLLCLAICLAGNSICWFNTASLVT 120

Query: 133 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF 192
           CIRNF  +RG V GILKGY GLS AI+T L +A+F +D +  L + A+VP VV L A++F
Sbjct: 121 CIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYF 180

Query: 193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNK---SETLALIFSGILII 249
           +R         E++ E+  F + N +++ +A+YL     L      S         I+++
Sbjct: 181 IRPCPGKVG--EQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVL 238

Query: 250 LLASPVAIPV 259
           LL  P+A+P+
Sbjct: 239 LLLVPLAVPI 248

This family represents a conserved region within plant nodulin-like proteins. Length = 248

>gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 92/369 (24%), Positives = 149/369 (40%), Gaps = 66/369 (17%)

Query: 31  YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRI-PAPI------ILLI 83
           Y F+  S A++   NLTQ +L+ ++ V      F L      D + P PI      +  +
Sbjct: 44  YAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCL 103

Query: 84  GSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGP 143
           G+L  L     Q ++    ++   Y  +    CM        +   +VT +  F  NRG 
Sbjct: 104 GTL--LFALTFQEVIEGSVVRLSVYNGLMTLGCM------LFDLGAVVTVLSVFPSNRGA 155

Query: 144 VSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPAST-- 201
           V  I+K + GL +AI   +  A F+D+ + + F L     VV + AI F+R      T  
Sbjct: 156 VVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGY 215

Query: 202 ----VDEE-------------KEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFS 244
               +DEE             K++A  +  +    I++ L +    FLP +   +A +  
Sbjct: 216 QEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIV----FLPLQGALVAYLKL 271

Query: 245 G-----------ILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTG 293
           G           I++ ++   +A P+ +F    +  R   + D + ++ VE         
Sbjct: 272 GSNFKVGFAVTVIVLTVIFPFMAFPLTTF----DGKRPHDDSDGKAKEHVE--------A 319

Query: 294 TEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMN 353
            EEV A ED VV    V+ +   P   E  T  E + T   W L  S  C VG    ++ 
Sbjct: 320 GEEVSAAEDKVVE-TDVDYIA--PQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIF 374

Query: 354 NMGQIGLAL 362
           N   I  AL
Sbjct: 375 NARFIYTAL 383

Length = 591

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 311 EEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--S 368
                  V  +D+T++E + T  FW+L++SF     +GL ++      G +LG  D    
Sbjct: 184 LIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLV 243

Query: 369 IFVSLTSIWGFFGRIISGSVSEY 391
           + VS++SI+   GR   G++S+ 
Sbjct: 244 LAVSISSIFNGGGRPFLGALSDK 266

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	394
PTZ00207	591	hypothetical protein; Provisional	100.0
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	100.0
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.93
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.93
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.9
PRK11663	434	regulatory protein UhpC; Provisional	99.88
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.88
PRK09705	393	cynX putative cyanate transporter; Provisional	99.87
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.87
PLN00028	476	nitrate transmembrane transporter; Provisional	99.86
PRK03545	390	putative arabinose transporter; Provisional	99.85
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.85
PRK12307	426	putative sialic acid transporter; Provisional	99.84
TIGR00891	405	2A0112 putative sialic acid transporter.	99.84
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.84
TIGR00893	399	2A0114 d-galactonate transporter.	99.84
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.84
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.83
PRK03699	394	putative transporter; Provisional	99.83
TIGR00895	398	2A0115 benzoate transport.	99.83
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.83
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.82
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.82
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.82
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.82
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.81
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.81
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.81
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.8
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.8
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.8
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.8
PRK10091	382	MFS transport protein AraJ; Provisional	99.79
PRK10642	490	proline/glycine betaine transporter; Provisional	99.79
TIGR00898	505	2A0119 cation transport protein.	99.79
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.78
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.78
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.78
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.77
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.77
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.77
KOG0569	485	consensus Permease of the major facilitator superf	99.76
PRK10504	471	putative transporter; Provisional	99.76
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.76
PRK03893	496	putative sialic acid transporter; Provisional	99.75
PRK10133	438	L-fucose transporter; Provisional	99.75
PRK11043	401	putative transporter; Provisional	99.75
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.74
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.74
TIGR00900	365	2A0121 H+ Antiporter protein.	99.74
PRK15075	434	citrate-proton symporter; Provisional	99.73
PRK03633	381	putative MFS family transporter protein; Provision	99.73
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.73
PRK05122	399	major facilitator superfamily transporter; Provisi	99.72
KOG2532	466	consensus Permease of the major facilitator superf	99.72
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.72
PRK09952	438	shikimate transporter; Provisional	99.72
PRK12382	392	putative transporter; Provisional	99.71
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.67
TIGR00805	633	oat sodium-independent organic anion transporter.	99.65
TIGR00901	356	2A0125 AmpG-related permease.	99.65
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.64
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.64
PRK10054	395	putative transporter; Provisional	99.64
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.63
PRK10489	417	enterobactin exporter EntS; Provisional	99.63
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.62
PRK09874	408	drug efflux system protein MdtG; Provisional	99.61
KOG2533	495	consensus Permease of the major facilitator superf	99.6
KOG0254	513	consensus Predicted transporter (major facilitator	99.6
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.59
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.59
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.59
PRK11010	491	ampG muropeptide transporter; Validated	99.58
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.57
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.57
KOG2563	480	consensus Permease of the major facilitator superf	99.56
PRK09528	420	lacY galactoside permease; Reviewed	99.56
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.56
PRK11902	402	ampG muropeptide transporter; Reviewed	99.55
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.53
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.52
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.51
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.5
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.49
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.47
PRK15011	393	sugar efflux transporter B; Provisional	99.46
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.43
PRK10642	490	proline/glycine betaine transporter; Provisional	99.35
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.35
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.34
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.31
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.3
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.3
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.29
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.29
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.25
PRK15011	393	sugar efflux transporter B; Provisional	99.23
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.22
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.22
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.12
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.12
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.12
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.11
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.09
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.07
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.05
PRK09528	420	lacY galactoside permease; Reviewed	99.05
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.05
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.04
PRK05122	399	major facilitator superfamily transporter; Provisi	99.02
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.01
PRK03545	390	putative arabinose transporter; Provisional	98.99
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.97
PRK10489	417	enterobactin exporter EntS; Provisional	98.97
PRK09952	438	shikimate transporter; Provisional	98.96
PRK03699	394	putative transporter; Provisional	98.95
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.94
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.93
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.93
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.93
PRK09669	444	putative symporter YagG; Provisional	98.92
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.9
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.89
KOG2615	451	consensus Permease of the major facilitator superf	98.89
PF13347	428	MFS_2: MFS/sugar transport protein	98.89
PRK11010	491	ampG muropeptide transporter; Validated	98.88
PRK10504	471	putative transporter; Provisional	98.87
PRK09705	393	cynX putative cyanate transporter; Provisional	98.85
PRK12307	426	putative sialic acid transporter; Provisional	98.85
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.83
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.83
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.82
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.81
PRK12382	392	putative transporter; Provisional	98.81
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.81
PRK09874	408	drug efflux system protein MdtG; Provisional	98.8
PRK03893	496	putative sialic acid transporter; Provisional	98.8
PRK03633	381	putative MFS family transporter protein; Provision	98.76
PRK15075	434	citrate-proton symporter; Provisional	98.76
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.75
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.74
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.74
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.73
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.73
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.72
PLN00028	476	nitrate transmembrane transporter; Provisional	98.72
PRK10429	473	melibiose:sodium symporter; Provisional	98.72
KOG0569	485	consensus Permease of the major facilitator superf	98.72
TIGR00895	398	2A0115 benzoate transport.	98.71
TIGR00893	399	2A0114 d-galactonate transporter.	98.71
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.71
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.7
TIGR00891	405	2A0112 putative sialic acid transporter.	98.7
TIGR00900	365	2A0121 H+ Antiporter protein.	98.69
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.69
PRK11043	401	putative transporter; Provisional	98.69
PRK10091	382	MFS transport protein AraJ; Provisional	98.64
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.63
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.59
PRK11663	434	regulatory protein UhpC; Provisional	98.57
PRK09848	448	glucuronide transporter; Provisional	98.57
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.56
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.55
PRK11902	402	ampG muropeptide transporter; Reviewed	98.53
TIGR00901	356	2A0125 AmpG-related permease.	98.53
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.51
PRK10054	395	putative transporter; Provisional	98.51
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.5
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.49
PRK10133	438	L-fucose transporter; Provisional	98.49
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.48
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.46
TIGR00898	505	2A0119 cation transport protein.	98.46
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.45
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.45
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.44
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.44
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.43
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.4
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.39
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.39
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.37
PRK11462	460	putative transporter; Provisional	98.34
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.34
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.32
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.31
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.3
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.3
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.3
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.28
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.25
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.24
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.24
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.23
PRK09848	448	glucuronide transporter; Provisional	98.23
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.22
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.17
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.17
KOG0254	513	consensus Predicted transporter (major facilitator	98.16
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.11
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.1
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.1
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.04
PF13347	428	MFS_2: MFS/sugar transport protein	98.03
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.92
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.88
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.85
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.84
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.83
PRK09669	444	putative symporter YagG; Provisional	97.83
PRK10429	473	melibiose:sodium symporter; Provisional	97.77
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.73
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.72
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.67
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.59
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.56
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.52
COG0477	338	ProP Permeases of the major facilitator superfamil	97.48
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.44
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.31
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.3
COG2211	467	MelB Na+/melibiose symporter and related transport	97.29
PRK11462	460	putative transporter; Provisional	97.27
KOG2532	466	consensus Permease of the major facilitator superf	97.16
KOG3762	618	consensus Predicted transporter [General function	97.15
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.14
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.13
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.12
KOG2533	495	consensus Permease of the major facilitator superf	97.03
COG2211	467	MelB Na+/melibiose symporter and related transport	96.98
PF12832	77	MFS_1_like: MFS_1 like family	96.89
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.88
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.58
KOG3626	735	consensus Organic anion transporter [Secondary met	96.57
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.56
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.51
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.46
KOG3764	464	consensus Vesicular amine transporter [Intracellul	96.17
PRK15462	493	dipeptide/tripeptide permease D; Provisional	96.03
KOG2816	463	consensus Predicted transporter ADD1 (major facili	95.83
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.83
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.56
PRK03612	521	spermidine synthase; Provisional	94.41
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	93.91
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	93.58
KOG3098	461	consensus Uncharacterized conserved protein [Funct	93.39
KOG2615	451	consensus Permease of the major facilitator superf	92.52
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	92.48
PTZ00207	591	hypothetical protein; Provisional	92.04
KOG3098	461	consensus Uncharacterized conserved protein [Funct	91.65
PF12832	77	MFS_1_like: MFS_1 like family	91.61
TIGR00805	633	oat sodium-independent organic anion transporter.	91.51
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	90.43
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	87.41
KOG3762	618	consensus Predicted transporter [General function	86.83
KOG0637	498	consensus Sucrose transporter and related proteins	86.28
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	85.47
KOG2563	480	consensus Permease of the major facilitator superf	82.95
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	80.67
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	80.15

>PTZ00207 hypothetical protein; Provisional

Probab=100.00  E-value=1.9e-44  Score=365.75  Aligned_cols=362  Identities=24%  Similarity=0.298  Sum_probs=283.1

Q ss_pred             CCCCcHHHHHHHHHHHHHhcccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhhhhhhHhhhhccCchHHHHHHHHHH
Q 016123            9 SSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEG   88 (394)
Q Consensus         9 ~~~~~w~~l~~~~~~~~~~g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~   88 (394)
                      +..+||..++++++++.+.|..|.|+++.+++++++|+|++|++++........++++++|++.||+|+|+++++|.++.
T Consensus        22 ~e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~  101 (591)
T PTZ00207         22 NEPRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVF  101 (591)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999976554444455778999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123           89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus        89 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      ++|+++++++..+.+. ++++++++++++.|+|.+..++++..++.+|||++||+++|+..++.++|+++++++...++.
T Consensus       102 ~iG~ll~ala~~~~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        102 CLGTLLFALTFQEVIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999886543332 378999999999999999888889999999999999999999999999999999999999887


Q ss_pred             CChhHHHHHHHHHHHHHHHhhhhcccccCCCCCccc----ccccc-----------------chhHhHHHHHHHHHHHHH
Q 016123          169 DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDE----EKEEA-----------------KYFSIINTVAIVVALYLQ  227 (394)
Q Consensus       169 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~----~~~~~-----------------~~~~~~~~~~~~l~~~~~  227 (394)
                      ++++.+++++++++.++++++.+++|++|+.....+    ++++.                 +|+.+.+..++++++|++
T Consensus       181 ~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~  260 (591)
T PTZ00207        181 DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLP  260 (591)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHH
Confidence            777889999999999999999999998885432100    11222                 377778888899999999


Q ss_pred             HHhhccCCCcch---hHHHHHHHH-HHHHhh-hhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhc
Q 016123          228 VYDFLPNKSETL---ALIFSGILI-ILLASP-VAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVED  302 (394)
Q Consensus       228 ~~~~~~~~~~~~---~~~~~~~~~-~~l~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  302 (394)
                      ++++++++.+++   +..++++++ +++..| +++|++. ++++++++   ++|.|+.+..++  +++      ...+|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~-~~~~~~~~---~~~~~~~~~~~~--~~~------~~~~~~  328 (591)
T PTZ00207        261 LQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT-FDGKRPHD---DSDGKAKEHVEA--GEE------VSAAED  328 (591)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH-hccCCcCC---Cccccccccccc--ccc------cccccc
Confidence            999999988876   677777776 777888 8888864 33222211   111111000000  000      000000


Q ss_pred             c-hhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhcccceeeeeeChHHHHHHh-CC-Ccc--hh-hHHHHHH
Q 016123          303 T-VVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL-GY-VDV--SI-FVSLTSI  376 (394)
Q Consensus       303 ~-~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~~-G~-~~~--a~-~vsl~si  376 (394)
                      + .+++  .+  .+.|+.++  |++|++++.|||++|++++|+.|+|+.++||++||.+++ |+ ++.  .. +++++|+
T Consensus       329 ~~~~~~--~~--~~~P~~~~--t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si  402 (591)
T PTZ00207        329 KVVETD--VD--YIAPQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGV  402 (591)
T ss_pred             cccccc--cc--CCCCCCcc--hHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhH
Confidence            0 0000  10  12355544  999999999999999999999999999999999999999 87 343  33 8999999


Q ss_pred             HHHHhhhhhcccc
Q 016123          377 WGFFGRIISGSVS  389 (394)
Q Consensus       377 ~~~~GRl~~G~ls  389 (394)
                      +|++||+.+|+++
T Consensus       403 ~~~~GRl~~g~~~  415 (591)
T PTZ00207        403 GSAVGRLCMSYFE  415 (591)
T ss_pred             HHHhhHHHHHHHH
Confidence            9999999999998

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=100.00  E-value=5.2e-36  Score=273.53  Aligned_cols=247  Identities=50%  Similarity=0.907  Sum_probs=230.3

Q ss_pred             cHHHHHHHHHHHHHhcccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhhhhhhHhhhhccCchHHHHHHHHHHHHHH
Q 016123           13 KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGY   92 (394)
Q Consensus        13 ~w~~l~~~~~~~~~~g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~   92 (394)
                      ||..++++++++.+.|+.|.|+.|.|++++++|+|++|++.++++..+|..++++.|.++||+|||.++++|.+...+||
T Consensus         1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY   80 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGY   80 (250)
T ss_pred             ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChh
Q 016123           93 GAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPA  172 (394)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~  172 (394)
                      .+++++..+.+++.++|+++++.++.|.|.++.++++..+..++||++||++.|+.++.+|+++++++.++..+++++..
T Consensus        81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~  160 (250)
T PF06813_consen   81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPS  160 (250)
T ss_pred             HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChH
Confidence            99999988877656799999999999999999889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcch---hHHHHHHHHH
Q 016123          173 KFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETL---ALIFSGILII  249 (394)
Q Consensus       173 ~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~  249 (394)
                      .+++++++.+.++++++.+++|+.|++...+++++|++++...+..++++++|+++.++++++.+++   +....+++++
T Consensus       161 ~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~l  240 (250)
T PF06813_consen  161 SFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLL  240 (250)
T ss_pred             HHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998875555667888899888888999999999999999999888   6667777788


Q ss_pred             HHHhhhhhcc
Q 016123          250 LLASPVAIPV  259 (394)
Q Consensus       250 ~l~~p~~~~~  259 (394)
                      ++.+|+++|+
T Consensus       241 lL~~Pl~i~~  250 (250)
T PF06813_consen  241 LLLLPLAIPV  250 (250)
T ss_pred             HHHhhhhccC
Confidence            8899998873

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.93  E-value=5.2e-25  Score=222.02  Aligned_cols=314  Identities=18%  Similarity=0.157  Sum_probs=223.9

Q ss_pred             CCCCcHHHHHHHHHHH-HHhcccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHH
Q 016123            9 SSAGKWLGFVTAVWVQ-AISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSL   86 (394)
Q Consensus         9 ~~~~~w~~l~~~~~~~-~~~g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~   86 (394)
                      +.-+.|.+++++++++ .+.|..++++++.+.++++++-+.++++|+.+....... .+|+.+.+.||+|.|.++++|.+
T Consensus        40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~  119 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL  119 (509)
T ss_pred             CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence            4457899999999886 467889999999999999999999999997665544444 59999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHH-HHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHh
Q 016123           87 EGLVGYGAQWLVVSRKIQPLSYWQMCV-FLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSA  165 (394)
Q Consensus        87 ~~~~g~~~~~~~~~~~~~~~~~~~l~~-~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~  165 (394)
                      +.++|+++.+++       +++|++++ ++++.|+|.|+.|.+...++.+||+|||++|+|+..+|.|+|..+++++.+.
T Consensus       120 v~~~g~~lssF~-------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~  192 (509)
T KOG2504|consen  120 VAALGLLLSSFA-------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKY  192 (509)
T ss_pred             HHHHHHHHHHHH-------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHH
Confidence            999999998876       47888886 7999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCChhHHHHHHHHHHHHHHHhhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHH
Q 016123          166 LFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSG  245 (394)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  245 (394)
                      +++...|+.-.++.....+..+++...+|+.+....+.++++.+....                 ....-          
T Consensus       193 l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~-----------------~~~~~----------  245 (509)
T KOG2504|consen  193 LLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAA-----------------SVEST----------  245 (509)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccc-----------------ccccc----------
Confidence            998755554444444444555566656655433322211111111000                 00000          


Q ss_pred             HHHHHHHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCC-CCCCcc-
Q 016123          246 ILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRP-VLGEDH-  323 (394)
Q Consensus       246 ~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-  323 (394)
                                       -++. .++.      ++  ..++....+++++ +  ..   .+++    . +... ..+... 
T Consensus       246 -----------------~~~~-~~~~------~~--~~~~~~~~~~~~~-~--~~---~~~~----~-~~~~~~~~~~~~  288 (509)
T KOG2504|consen  246 -----------------PKPV-ELRI------SE--RDSGLKKLSLSNL-A--TL---KRGP----D-KWRNSPLQAFLS  288 (509)
T ss_pred             -----------------cccc-cccc------cc--CCCCCCcccccch-h--hh---hhCC----c-cccccchhhhhh
Confidence                             0000 0000      00  0011000000000 0  00   0000    0 0000 011111 


Q ss_pred             -hHHHHhhchhHHHHHHHHHhcccceeeeeeChHHHHHHhCCC--cchhhHHHHHHHHHHhhhhhccccchhc
Q 016123          324 -TIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFI  393 (394)
Q Consensus       324 -t~~~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~  393 (394)
                       --++++|++.|+++.+...+..........+++.+.++.|++  +++.+++++++.|.+||++.|++.|+..
T Consensus       289 ~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~  361 (509)
T KOG2504|consen  289 MLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG  361 (509)
T ss_pred             hhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc
Confidence             126899999999999999999998888999999999999997  5889999999999999999999999864

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.93  E-value=1.8e-24  Score=209.86  Aligned_cols=266  Identities=22%  Similarity=0.293  Sum_probs=197.0

Q ss_pred             CcHHHHHHHHHHHHHhcccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHH
Q 016123           12 GKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLV   90 (394)
Q Consensus        12 ~~w~~l~~~~~~~~~~g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~   90 (394)
                      |+|+.+.+.+......+..|.++.+.|++++++|+|.++.+++.+...++... .++.|++.||+|+|+++.++.++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~   80 (377)
T TIGR00890         1 RWWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL   80 (377)
T ss_pred             CeEEEeHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH
Confidence            45777777777777777788999999999999999999999987777788764 89999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCC
Q 016123           91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADD  170 (394)
Q Consensus        91 g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~  170 (394)
                      +...++++       ++++.+++.+++.|++.+..+......+.+|+|++||++.++...+.++|..+.+++...+.+  
T Consensus        81 ~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--  151 (377)
T TIGR00890        81 GFTFYAIA-------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVIN--  151 (377)
T ss_pred             HHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHh--
Confidence            98887765       468888888999999998877777788899999999999999999999999888877766543  


Q ss_pred             hhHHHHHHHHHHHHHHHhhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHH
Q 016123          171 PAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIIL  250 (394)
Q Consensus       171 ~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (394)
                                                          ..+||..+...+.+.+..                          
T Consensus       152 ------------------------------------~~~~~~~f~~~~~~~~~~--------------------------  169 (377)
T TIGR00890       152 ------------------------------------LEGVPAAFIYMGIIFLLV--------------------------  169 (377)
T ss_pred             ------------------------------------cccHHHHHHHHHHHHHHH--------------------------
Confidence                                                245665443322111000                          


Q ss_pred             HHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhh
Q 016123          251 LASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMW  330 (394)
Q Consensus       251 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~  330 (394)
                       ..+....    ++     +++.+       +.++   +               ++       .    ..++.+.++.+|
T Consensus       170 -~~~~~~~----~~-----~~~~~-------~~~~---~---------------~~-------~----~~~~~~~~~~~~  203 (377)
T TIGR00890       170 -IVLGAFL----IG-----YPPGQ-------LIKT---N---------------IE-------V----SVKDYTVWEMLR  203 (377)
T ss_pred             -HHHHHHh----ee-----cCchh-------cccc---C---------------cc-------c----chhhhhHHHHHc
Confidence             0000000    11     11000       0000   0               00       0    001234578899


Q ss_pred             chhHHHHHHHHHhcccceeeeeeChHHHHHHhCCCc--chhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          331 TVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       331 t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~~G~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      ++++|++.+.+++.........+...++.++.|.++  .....++.++.+.++++..|+++||++|
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~  269 (377)
T TIGR00890       204 TPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGR  269 (377)
T ss_pred             CccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999988887776666556667777888888764  5578888999999999999999999986

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.90  E-value=1.8e-22  Score=200.34  Aligned_cols=290  Identities=13%  Similarity=0.080  Sum_probs=200.9

Q ss_pred             CCcHHHHHHHHHHHHHhcc-cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHH
Q 016123           11 AGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG   88 (394)
Q Consensus        11 ~~~w~~l~~~~~~~~~~g~-~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~   88 (394)
                      +.+|......++...+... ....+...|.+++++|+|..+.+++.+...++... +++.|++.||+|||+++..+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~   83 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW   83 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence            3467666666655544333 45667778899999999999999987777777754 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123           89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus        89 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      +++..+.+++       ++++.+++.|++.|++.+..++.....+.+|||+ +||+++|+...+.++|..+.+.+...+.
T Consensus        84 ~~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332        84 GIASTATMFA-------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL  156 (412)
T ss_pred             HHHHHHHHHh-------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998887764       4688888999999999998777777788999995 7999999999999999999888877665


Q ss_pred             C------CChhHHHHHHHHHH-HHHHHhhhhcccccCCCCCc-cccccccchhHhHHHHHHHHHHHHHHHhhccCCCcch
Q 016123          168 A------DDPAKFLFMLAIVP-FVVCLGAIFFLRETTPASTV-DEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETL  239 (394)
Q Consensus       168 ~------~~~~~~~~~~~~~~-~~v~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  239 (394)
                      +      ...||..+++..++ .+..++..+++|++|++... ++  ++.....          .               
T Consensus       157 ~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~--~~~~~~~----------~---------------  209 (412)
T TIGR02332       157 ALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDE--EDKKALK----------E---------------  209 (412)
T ss_pred             hCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCH--HHHHHHH----------H---------------
Confidence            3      23566655554444 34445556667777754221 00  0000000          0               


Q ss_pred             hHHHHHHHHHHHHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCC
Q 016123          240 ALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVL  319 (394)
Q Consensus       240 ~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (394)
                                            ..++.   +.+         ..+|   ++              +.       ++.+ .
T Consensus       210 ----------------------~~~~~---~~~---------~~~~---~~--------------~~-------~~~~-~  230 (412)
T TIGR02332       210 ----------------------MIDND---QLT---------LEQP---EG--------------AF-------AHAA-M  230 (412)
T ss_pred             ----------------------HHHhc---ccc---------cccc---cc--------------cc-------cccc-c
Confidence                                  00000   000         0000   00              00       0000 0


Q ss_pred             CCcchHHHHhhchhHHHHHHHHHhcccceeeeeeChHHHHHHh--CCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          320 GEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL--GYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       320 ~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~~--G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      .....+++ ++++.+|+..+.+++.......+.+++++++++.  |.+  +++...++..+++.+|+++.|+++||++|
T Consensus       231 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~  308 (412)
T TIGR02332       231 PQRSMLRE-IFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKE  308 (412)
T ss_pred             cHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCc
Confidence            00112333 4578999999988887776667888999999986  444  35667888999999999999999999874

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.88  E-value=1.3e-21  Score=195.49  Aligned_cols=158  Identities=15%  Similarity=0.103  Sum_probs=123.8

Q ss_pred             cccCcCCCCcHHHHHHHHHHHHHh-cccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHH
Q 016123            4 EVSYTSSAGKWLGFVTAVWVQAIS-GNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIIL   81 (394)
Q Consensus         4 ~~~~~~~~~~w~~l~~~~~~~~~~-g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~   81 (394)
                      |+..+....||..+...++...+. ...+.++.+.|++.+++|+|..+.+++.+...++.. .+++.|++.||+|+|+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~   91 (434)
T PRK11663         12 EIDARYRYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFM   91 (434)
T ss_pred             HHHhHhHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhH
Confidence            333333333444444444443332 234567788899999999999999998777777775 489999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHH
Q 016123           82 LIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFT  160 (394)
Q Consensus        82 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~  160 (394)
                      .++.++.+++.++..+.       ++++.+++.+++.|++.|..+.+....+.+|||+ +||+++|+...+.++|+.+.+
T Consensus        92 ~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~  164 (434)
T PRK11663         92 GIGLIATGIINILFGFS-------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIP  164 (434)
T ss_pred             HHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988877654       4678888888888988888777788889999985 699999999999999999988


Q ss_pred             HHHHhhcC
Q 016123          161 DLCSALFA  168 (394)
Q Consensus       161 ~i~~~~~~  168 (394)
                      .+...+.+
T Consensus       165 ~~~~~l~~  172 (434)
T PRK11663        165 LVVGAIAL  172 (434)
T ss_pred             HHHHHHHH
Confidence            88777654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.88  E-value=8.8e-22  Score=198.51  Aligned_cols=270  Identities=14%  Similarity=0.065  Sum_probs=178.0

Q ss_pred             cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (394)
Q Consensus        30 ~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  108 (394)
                      ...+++..|++++++|+|..+.+++.+...++..+ +++.|++.||+|+|+++.++.++.+++.+..+......  ++++
T Consensus        45 r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~  122 (467)
T PRK09556         45 RKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSG--SVSL  122 (467)
T ss_pred             hcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcc--cchH
Confidence            46677888999999999999999987777777754 89999999999999999999888887777665432111  1468


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCC---ChhH-HHHHHHHHHH
Q 016123          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD---DPAK-FLFMLAIVPF  183 (394)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~---~~~~-~~~~~~~~~~  183 (394)
                      +.+++.|++.|++.+...++..+.+.+|||+ +||+++|+..++.++|+++.+.+.....+.   ..|+ .+.+.+++..
T Consensus       123 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~  202 (467)
T PRK09556        123 GLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIAL  202 (467)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHH
Confidence            8888899999999988878888899999985 799999999999999999887765443321   0111 1111122222


Q ss_pred             HHHHhhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhcccccc
Q 016123          184 VVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFI  263 (394)
Q Consensus       184 ~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~  263 (394)
                      +++++..+++|+.|++                                                                
T Consensus       203 ~~~i~~~~~~~~~p~~----------------------------------------------------------------  218 (467)
T PRK09556        203 IIGFIGLRYGSDSPEE----------------------------------------------------------------  218 (467)
T ss_pred             HHHHHHHHhCCCChhh----------------------------------------------------------------
Confidence            2222222222222211                                                                


Q ss_pred             cccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHh
Q 016123          264 KSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLC  343 (394)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~  343 (394)
                             .+.. +.++ ...++  ..          ++  ++.+      ++.+....+.-.++.+|++.+|.+.+..++
T Consensus       219 -------~~~~-~~~~-~~~~~--~~----------~~--~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  269 (467)
T PRK09556        219 -------LGWG-KAEE-IFGEP--IS----------EE--DKET------ESTDMTKWQIFVEYVLKNPVIWLLCFANIF  269 (467)
T ss_pred             -------cCCC-Chhh-cccCc--cc----------hh--hhcc------ccccCcHHHHHHHHHHcChHHHHHHHHHHH
Confidence                   0000 0000 00000  00          00  0000      000000001112347899999999998888


Q ss_pred             cccceeeeeeChHHHHHH-hCCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          344 GVGTGLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       344 ~~g~g~~~~~n~~~i~~~-~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      .......+.+.++.++++ .|++  +++...++..+++.+|++++|+++||++|
T Consensus       270 ~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~  323 (467)
T PRK09556        270 LYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANG  323 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            766666666778877754 6886  45677888999999999999999999985

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.87  E-value=6.6e-21  Score=187.91  Aligned_cols=242  Identities=12%  Similarity=0.020  Sum_probs=178.6

Q ss_pred             cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (394)
Q Consensus        30 ~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  108 (394)
                      .++.+...|++++++|+|..+.+++.+...++... +++.|++.||+|+|+++..+.++.+++.+..+++       +++
T Consensus        25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a-------~~~   97 (393)
T PRK09705         25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY-------PQS   97 (393)
T ss_pred             hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC-------cch
Confidence            36788899999999999999999987777777754 8999999999999999999999999999988764       467


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 016123          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG  188 (394)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~  188 (394)
                      +.+.+.|++.|+|.+..++.....+.+|||++|++++|+..++..+|..+.+.+...+.+.                   
T Consensus        98 ~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~-------------------  158 (393)
T PRK09705         98 ALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQH-------------------  158 (393)
T ss_pred             HHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            8888899999999998887777888999999999999999988888888887776554431                   


Q ss_pred             hhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhccccccccccc
Q 016123          189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL  268 (394)
Q Consensus       189 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~  268 (394)
                                        ..+||..+...+...                            ++..+..++    ..++  
T Consensus       159 ------------------~~~w~~~~~~~~~~~----------------------------~~~~~~~~~----~~~~--  186 (393)
T PRK09705        159 ------------------SETWYQTLAWWALPA----------------------------VVALFAWWW----QSAR--  186 (393)
T ss_pred             ------------------cCCHHHHHHHHHHHH----------------------------HHHHHHHHH----HhcC--
Confidence                              125655432221100                            000000001    1100  


Q ss_pred             ccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhcccce
Q 016123          269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG  348 (394)
Q Consensus       269 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g  348 (394)
                       +++           ++                   ++       ++       .+.++.+|++++|.+.+.+++.....
T Consensus       187 -~~~-----------~~-------------------~~-------~~-------~~~~~~l~~~~~~~l~~~~~~~~~~~  221 (393)
T PRK09705        187 -EVA-----------SS-------------------HK-------TT-------TTPVRVVFTPRAWTLGVYFGLINGGY  221 (393)
T ss_pred             -CCc-----------cc-------------------cC-------CC-------cCCcccccCHhHHHHHHHHHHHHHHH
Confidence             110           00                   00       00       01134567889998888777665555


Q ss_pred             eeeeeChHHHHHHhCCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          349 LAVMNNMGQIGLALGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       349 ~~~~~n~~~i~~~~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      ..+.+.++++.++.|.+  ++....+++++++.+||++.|++.||++|
T Consensus       222 ~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~  269 (393)
T PRK09705        222 ASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDR  269 (393)
T ss_pred             HHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            56778889999998886  36678899999999999999999999986

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.87  E-value=1.5e-20  Score=188.94  Aligned_cols=286  Identities=11%  Similarity=0.058  Sum_probs=188.0

Q ss_pred             CCCCcHHHHHHHHHHHHH-hcccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHH
Q 016123            9 SSAGKWLGFVTAVWVQAI-SGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSL   86 (394)
Q Consensus         9 ~~~~~w~~l~~~~~~~~~-~g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~   86 (394)
                      +..++|.++.++++.+.. .+..+.++.+.|++++++|+|.++.+++.+...++.. .+++.|++.||+|+|++++.+.+
T Consensus        13 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~   92 (455)
T TIGR00892        13 DGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGL   92 (455)
T ss_pred             CCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHH
Confidence            346789888888777543 3445778899999999999999999997666555554 58999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHH-HHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHh
Q 016123           87 EGLVGYGAQWLVVSRKIQPLSYWQMCV-FLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSA  165 (394)
Q Consensus        87 ~~~~g~~~~~~~~~~~~~~~~~~~l~~-~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~  165 (394)
                      +..++.++++++       ++++.+++ .+++.|++.+....+....+.+|||++|++++|+..++.++|+.+.+++...
T Consensus        93 ~~~~~~~~~~~~-------~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~  165 (455)
T TIGR00892        93 LASLGMILASFS-------SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQY  165 (455)
T ss_pred             HHHHHHHHHHHh-------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            888888877654       35666664 5688898888765666777889999999999999999999999999888776


Q ss_pred             hcCCChhHHHHHHHHHHHHHHHhhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHH
Q 016123          166 LFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSG  245 (394)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  245 (394)
                      +.+.                                      .+||..+...+++.+..                     
T Consensus       166 l~~~--------------------------------------~gwr~~f~~~~~~~~~~---------------------  186 (455)
T TIGR00892       166 LFES--------------------------------------FGWRGSFLILGGLLLHC---------------------  186 (455)
T ss_pred             HHHH--------------------------------------hChHHHHHHHHHHHHHH---------------------
Confidence            6542                                      34554443322110000                     


Q ss_pred             HHHHHHHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchH
Q 016123          246 ILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTI  325 (394)
Q Consensus       246 ~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  325 (394)
                        .+...     .    +++..+ +++.+. .++++..++   +.  + .    +   ++..      .+......+.-.
T Consensus       187 --~v~~~-----~----~~~~~~-~~~~~~-~~~~~~~~~---~~--~-~----~---~~~~------~~~~~~~~~~~~  234 (455)
T TIGR00892       187 --CVCGA-----L----MRPVGP-SQRVSK-SKSKEGLPP---DG--S-T----K---KLSK------KSTAEKINRFLD  234 (455)
T ss_pred             --HHHHH-----H----hCCCCc-cccccc-ccccccCCC---CC--c-c----c---cccc------cchhhhhhhhcc
Confidence              00000     0    110000 000000 000000000   00  0 0    0   0000      000000001111


Q ss_pred             HHHhhchhHHHHHHHHHhcccceeeeeeChHHHHHHhCCC--cchhhHHHHHHHHHHhhhhhccccchh
Q 016123          326 FEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYV--DVSIFVSLTSIWGFFGRIISGSVSEYF  392 (394)
Q Consensus       326 ~~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~  392 (394)
                      .+.+|+|.||.+.+..++...........++++.++.|++  +++...++.++++.++|++.|+++||.
T Consensus       235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  303 (455)
T TIGR00892       235 FSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK  303 (455)
T ss_pred             hHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3688999999988887776666666677888899999887  467888899999999999999999973

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.86  E-value=1.4e-20  Score=190.25  Aligned_cols=261  Identities=14%  Similarity=0.084  Sum_probs=170.3

Q ss_pred             cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (394)
Q Consensus        30 ~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  108 (394)
                      .+.++.+.|.+++++|+|..+.+++.+...++... .++.|++.||+|+|+++..+.++.+++.++.+++       .++
T Consensus        52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-------~s~  124 (476)
T PLN00028         52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-------SSA  124 (476)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-------cCH
Confidence            46777888999999999999999977767777765 7999999999999999999999888888776654       357


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 016123          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL  187 (394)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~  187 (394)
                      +.+++.|++.|++.+.. .+....+.+||| ++||+++|+..+...+|+.+.+.+...+..                  .
T Consensus       125 ~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~------------------~  185 (476)
T PLN00028        125 TGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFP------------------L  185 (476)
T ss_pred             HHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H
Confidence            77777899999887753 445566889998 479999999987666666665544322210                  0


Q ss_pred             hhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhcccccccccc
Q 016123          188 GAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN  267 (394)
Q Consensus       188 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~  267 (394)
                      +    .....   .    ...+||..+...+.+.+..                           ..... .    +.++ 
T Consensus       186 ~----~~~~~---~----~~~gWr~~f~i~g~l~l~~---------------------------~l~~~-~----~~~~-  221 (476)
T PLN00028        186 I----KDAGA---P----SFTAWRIAFFVPGLLHIIM---------------------------GILVL-T----LGQD-  221 (476)
T ss_pred             H----HhcCC---c----chhhhHHHHHHHHHHHHHH---------------------------HHHHH-H----HcCc-
Confidence            0    00000   0    0247887665443221110                           00000 0    1111 


Q ss_pred             cccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhcccc
Q 016123          268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT  347 (394)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~  347 (394)
                        +|+.+        .++   .          +   .+++      .+ + ......+++.++++++|++++.+++..+.
T Consensus       222 --~p~~~--------~~~---~----------~---~~~~------~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (476)
T PLN00028        222 --LPDGN--------YRE---L----------K---KSGT------MP-K-DSFSKVLRYGVTNYRTWILALTYGYSFGV  267 (476)
T ss_pred             --CCCCc--------hhh---H----------H---hcCc------cc-c-ccHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence              11000        000   0          0   0000      00 0 00113467889999999999888776665


Q ss_pred             eeeeeeChHHHHHH-hCCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          348 GLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       348 g~~~~~n~~~i~~~-~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      ...+.+.++++..+ .|++  ++..+.++..+++.+||+++|+++||++|
T Consensus       268 ~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~  317 (476)
T PLN00028        268 ELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAAR  317 (476)
T ss_pred             HHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            55556667777655 5886  46678889999999999999999999864

>PRK03545 putative arabinose transporter; Provisional

Probab=99.85  E-value=7.5e-20  Score=179.99  Aligned_cols=260  Identities=8%  Similarity=-0.014  Sum_probs=178.5

Q ss_pred             CCcHHHHHHHHHHHHHh-cccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHH
Q 016123           11 AGKWLGFVTAVWVQAIS-GNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEG   88 (394)
Q Consensus        11 ~~~w~~l~~~~~~~~~~-g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~   88 (394)
                      .++|..+....+..+.. ...|....+.|++++++|+|+++.+++.+...++.. .+++.|++.||+|+|+++..+.++.
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   84 (390)
T PRK03545          5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF   84 (390)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            45665444333333222 223444456789999999999999997777666664 5789999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123           89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus        89 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      +++...+.++       ++++.+++.|++.|++.+..++...+.+.+++| ++||+++|+...+.++|..+.+++...+.
T Consensus        85 ~~~~~~~~~~-------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~  157 (390)
T PRK03545         85 IASHVLSALA-------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG  157 (390)
T ss_pred             HHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            9998877654       478888889999999888777777788899998 58999999999999999988888776554


Q ss_pred             CCChhHHHHHHHHHHHHHHHhhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHH
Q 016123          168 ADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGIL  247 (394)
Q Consensus       168 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  247 (394)
                      +                                      ..+||..+...+.+.+.                        
T Consensus       158 ~--------------------------------------~~gw~~~f~~~~~~~~l------------------------  175 (390)
T PRK03545        158 Q--------------------------------------YLGWRTTFLAIGGGALI------------------------  175 (390)
T ss_pred             H--------------------------------------HhcHHHHHHHHHHHHHH------------------------
Confidence            3                                      34677655333211000                        


Q ss_pred             HHHHHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHH
Q 016123          248 IILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFE  327 (394)
Q Consensus       248 ~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  327 (394)
                         ........    ++    +++          ++++                    ++              ..+.++
T Consensus       176 ---~~~~~~~~----~~----~~~----------~~~~--------------------~~--------------~~~~~~  200 (390)
T PRK03545        176 ---TLLLLIKL----LP----LLP----------SEHS--------------------GS--------------LKSLPL  200 (390)
T ss_pred             ---HHHHHHHh----CC----CCC----------CCCc--------------------ch--------------HHHHHH
Confidence               00000000    11    000          0000                    00              113467


Q ss_pred             HhhchhHHHHHHHHHhcccceeeeeeChHHHHHH-hCCCc--chhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          328 AMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       328 ~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~-~G~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      .+|++.+|..++..++.........+.+.++.++ .|.+.  .....+++++.+.+|+++.|+++||++|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~  270 (390)
T PRK03545        201 LFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPS  270 (390)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            8999999877666555444444444566777776 46653  5677888999999999999999999875

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.85  E-value=5.1e-20  Score=181.86  Aligned_cols=153  Identities=15%  Similarity=0.021  Sum_probs=127.7

Q ss_pred             CcCCCCcHHHHHHHHHHHHHhcc-cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHH
Q 016123            7 YTSSAGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIG   84 (394)
Q Consensus         7 ~~~~~~~w~~l~~~~~~~~~~g~-~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g   84 (394)
                      -+..+++|.++..+++..+..+. .+..+...|.+.+++|+|..+.+++.+...++..+ +++.|++.||+|+|+++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   86 (406)
T PRK11551          7 SASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVS   86 (406)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence            35677899988888877766554 56778888999999999999999987777777765 89999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHH
Q 016123           85 SLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLC  163 (394)
Q Consensus        85 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~  163 (394)
                      .++..++.++..+.       ++++.+.+.+++.|++.+..++.....+.+++| ++||+++|+...+..+|+.+.+.+.
T Consensus        87 ~~~~~~~~~~~~~~-------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  159 (406)
T PRK11551         87 VALFGLFSLATAQA-------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIG  159 (406)
T ss_pred             HHHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98888887766543       367788889999999998887777888999998 5799999999999999988887665


Q ss_pred             Hhh
Q 016123          164 SAL  166 (394)
Q Consensus       164 ~~~  166 (394)
                      ..+
T Consensus       160 ~~~  162 (406)
T PRK11551        160 VLA  162 (406)
T ss_pred             HHH
Confidence            444

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.84  E-value=6.7e-20  Score=182.13  Aligned_cols=150  Identities=16%  Similarity=0.138  Sum_probs=121.7

Q ss_pred             CcHHHHHHHHHHHHHhcc-cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHH
Q 016123           12 GKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGL   89 (394)
Q Consensus        12 ~~w~~l~~~~~~~~~~g~-~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~   89 (394)
                      .+|..+..+.+.....+. .+..+...|.+++++|+|..+.+++.+...++..+ +++.|++.||+|+|+++.++.++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~   94 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYS   94 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            445555555555555443 33445667788999999999999987777777765 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123           90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus        90 ~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      ++.+...++       ++++.+++.|++.|++.+..++.....+.+++|+ +|+++.|+...+.++|..+.+.+...+.+
T Consensus        95 ~~~~~~~~~-------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~  167 (426)
T PRK12307         95 VGTGLSGLA-------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE  167 (426)
T ss_pred             HHHHHHHHH-------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence            998877664       4678888899999999998888888889999985 69999999999999999988877666544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.84  E-value=1.2e-19  Score=178.25  Aligned_cols=172  Identities=16%  Similarity=0.140  Sum_probs=136.5

Q ss_pred             CCCCcHHHHHHHHHHHHHhcc-cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHH
Q 016123            9 SSAGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSL   86 (394)
Q Consensus         9 ~~~~~w~~l~~~~~~~~~~g~-~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~   86 (394)
                      -++++|..+....+.....+. .+..+...|++++++|+|..+.+++.+...++.. .+++.|++.||+|||+++.++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   85 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV   85 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            456888887777776665554 4567788899999999999999997777777765 48999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHh
Q 016123           87 EGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSA  165 (394)
Q Consensus        87 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~  165 (394)
                      +.+++.++..+.       ++++.+++.+++.|++.+..+......+.+++| ++|+++.|+..++.++|..+.+.+...
T Consensus        86 ~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~  158 (405)
T TIGR00891        86 LFSAGTLACGFA-------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL  158 (405)
T ss_pred             HHHHHHHHHHHh-------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888877654       468888889999999999888888888999998 579999999999999999988887776


Q ss_pred             hcCCC--hhHHHHHHHHHHHHHHH
Q 016123          166 LFADD--PAKFLFMLAIVPFVVCL  187 (394)
Q Consensus       166 ~~~~~--~~~~~~~~~~~~~~v~~  187 (394)
                      +.+..  .|+..+.+++++.++.+
T Consensus       159 l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       159 VVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHHH
Confidence            65432  25555554444444333

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.84  E-value=2.2e-20  Score=178.28  Aligned_cols=283  Identities=15%  Similarity=0.094  Sum_probs=196.6

Q ss_pred             CCcHHHHHHHHHHHHHhc-ccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHH
Q 016123           11 AGKWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG   88 (394)
Q Consensus        11 ~~~w~~l~~~~~~~~~~g-~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~   88 (394)
                      +.||.+++..++...+.- +.-.|++-.|+++++.++|.+|++.+.+...+..-+ -.+.|.+.||.++|+.+.+|.++.
T Consensus        25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils  104 (448)
T COG2271          25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS  104 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence            344445554444443322 345788889999999999999999988888777755 689999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHH--Hh
Q 016123           89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLC--SA  165 (394)
Q Consensus        89 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~--~~  165 (394)
                      ++..+++.+.       ++++.+.+..++.|.-+|+..+++..++.+|||+ +||+..++-++...+|+++.+++.  ..
T Consensus       105 ai~nil~Gfs-------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~  177 (448)
T COG2271         105 AIVNILFGFS-------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAF  177 (448)
T ss_pred             HHHHHHHhhh-------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHH
Confidence            9999988764       4677777788889998998888999999999996 699999999999999999999988  44


Q ss_pred             hcCC-ChhHHHHHHHHHHHHHHHhhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHH
Q 016123          166 LFAD-DPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFS  244 (394)
Q Consensus       166 ~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  244 (394)
                      +... +++..+++-+++..+++++..+..|+.|++.        |.                                  
T Consensus       178 ~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~--------GL----------------------------------  215 (448)
T COG2271         178 FAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE--------GL----------------------------------  215 (448)
T ss_pred             HHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc--------CC----------------------------------
Confidence            4433 2233344444444455555555555555431        10                                  


Q ss_pred             HHHHHHHHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcch
Q 016123          245 GILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHT  324 (394)
Q Consensus       245 ~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  324 (394)
                                                    +++|+-.++++   +.        .+   ++.       +.++....+.=
T Consensus       216 ------------------------------P~ie~~~~d~~---e~--------~~---~~~-------~~~~ls~~~i~  244 (448)
T COG2271         216 ------------------------------PPIEEYRGDPL---EI--------YE---EEK-------ENEGLTAWQIF  244 (448)
T ss_pred             ------------------------------CCHHHhhcCch---hh--------hh---hhc-------cCCCccHHHHH
Confidence                                          11111100000   00        00   000       00011111223


Q ss_pred             HHHHhhchhHHHHHHHHHhcccceeeeeeChHHHHHH-hCCC--cchhhHHHHHHHHHHhhhhhccccchhc
Q 016123          325 IFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFI  393 (394)
Q Consensus       325 ~~~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~-~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~  393 (394)
                      .+-.+|||..|++.++.++.-..=.++..=.+-++.+ .|++  ++....+++=++...|-+++||+|||+-
T Consensus       245 ~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklf  316 (448)
T COG2271         245 VKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLF  316 (448)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3456789999999999888755555555555555544 5676  5778999999999999999999999975

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.84  E-value=7.5e-20  Score=177.97  Aligned_cols=264  Identities=16%  Similarity=0.142  Sum_probs=184.1

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      +.++...|.+++++|+|..+.+++.+...++... .++.|++.||+|||+++.++.++.+++....++.       ++++
T Consensus        11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~   83 (399)
T TIGR00893        11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-------GAYV   83 (399)
T ss_pred             HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-------cCHH
Confidence            4566777889999999999999987777777764 8999999999999999999999998888877654       3688


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHH-HHHHHH
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIV-PFVVCL  187 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~-~~~v~~  187 (394)
                      .+++.+++.|++.+...+.....+.+++| ++|++++|+.....++|..+.+++...+.+...|+..+.+..+ ..+..+
T Consensus        84 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  163 (399)
T TIGR00893        84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGV  163 (399)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence            88889999999999888888889999998 5799999999999999999998887776653323332222221 111122


Q ss_pred             hhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhcccccccccc
Q 016123          188 GAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN  267 (394)
Q Consensus       188 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~  267 (394)
                      +..+..|++|++...                                                                 
T Consensus       164 ~~~~~~~~~~~~~~~-----------------------------------------------------------------  178 (399)
T TIGR00893       164 LWLKFIPDPPQKAKW-----------------------------------------------------------------  178 (399)
T ss_pred             HhhheecCCCCcccc-----------------------------------------------------------------
Confidence            222222222211100                                                                 


Q ss_pred             cccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhcccc
Q 016123          268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT  347 (394)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~  347 (394)
                            +  .++++....  .+.        .+    +.+      ++++...+..+.++.+|++++|.+.+..++....
T Consensus       179 ------~--~~~~~~~~~--~~~--------~~----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (399)
T TIGR00893       179 ------L--TEEEKYIVV--GGL--------LA----EQQ------GKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIG  230 (399)
T ss_pred             ------C--CHHHHhhcc--hhh--------cc----ccc------cccccCCCccchHHHhcCHHHHHHHHHHHHHHhH
Confidence                  0  000000000  000        00    000      0000011234568899999999999998888877


Q ss_pred             eeeeeeChHHHHHH-hCCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          348 GLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       348 g~~~~~n~~~i~~~-~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      ...+....+.+.++ .|.+  +.....++..+.+.+++++.|+++||++|
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  280 (399)
T TIGR00893       231 LGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLR  280 (399)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77777778888765 5665  35678888999999999999999999886

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.84  E-value=1e-19  Score=177.91  Aligned_cols=242  Identities=14%  Similarity=0.045  Sum_probs=161.7

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      +.++...|++++++|+|.+|.+++.+...++.. .+++.|++.||+|||+++..+......+.. ....  .    ++++
T Consensus         8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~--~----~~~~   80 (368)
T TIGR00903         8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLD--P----FNYE   80 (368)
T ss_pred             HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHH--h----ccHH
Confidence            456778899999999999999998777777775 489999999999988876554444333322 2111  1    3678


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG  188 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~  188 (394)
                      .+.+.|++.|+|.+. +.+.....++|+| ++|++++++..++..+|..+.+.+...+.+                    
T Consensus        81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~--------------------  139 (368)
T TIGR00903        81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT--------------------  139 (368)
T ss_pred             HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            888899999999985 4556666789998 579999999999999999999777666543                    


Q ss_pred             hhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhccccccccccc
Q 016123          189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL  268 (394)
Q Consensus       189 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~  268 (394)
                                        ..+||..+...+++.+..                            ..+...   .++ +  
T Consensus       140 ------------------~~gWr~~f~~~~~l~~~~----------------------------~~~~~~---~lp-~--  167 (368)
T TIGR00903       140 ------------------AGGLQLLIIPIAAVAAAG----------------------------IILVLA---ALP-A--  167 (368)
T ss_pred             ------------------ccchHHHHHHHHHHHHHH----------------------------HHHHHH---HcC-C--
Confidence                              357776554433221110                            000000   011 1  


Q ss_pred             ccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhcccce
Q 016123          269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG  348 (394)
Q Consensus       269 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g  348 (394)
                       +|+.        +.+.   .               +..      +   .   ...+++.+|+|++|.+++..++.....
T Consensus       168 -~p~~--------~~~~---~---------------~~~------~---~---~~~~~~ll~~~~~~~~~~~~~~~~~~~  208 (368)
T TIGR00903       168 -LPFQ--------AAEG---F---------------GFK------D---A---VKEFGALAGRKDLWIIGAILGFGVALF  208 (368)
T ss_pred             -CCCC--------CCCC---c---------------chH------H---H---HHHHHHHHcChhHHHHHHHHHHHHHHH
Confidence             1100        0000   0               000      0   0   013678999999999999999988888


Q ss_pred             eeeeeChHHHHHHhCCCc-chhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          349 LAVMNNMGQIGLALGYVD-VSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       349 ~~~~~n~~~i~~~~G~~~-~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      ..+.+-+++++++.|++. .....   .+....|-+..++++||+.|
T Consensus       209 ~~~~~wlp~~L~~~g~s~~~~~~~---~l~~~~g~~g~~~~~d~~~r  252 (368)
T TIGR00903       209 DNLAIWLEAALRPAGLEDIAGDAV---ALAILAGLIGVAVIPDRVAR  252 (368)
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHH---HHHHHHHHHHHHHhhHHhhh
Confidence            888888999999988763 22333   33344455556899999754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.83  E-value=7.8e-20  Score=183.58  Aligned_cols=148  Identities=16%  Similarity=0.043  Sum_probs=111.4

Q ss_pred             CcHHHHHHHHHHHHHhc-ccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHH
Q 016123           12 GKWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGL   89 (394)
Q Consensus        12 ~~w~~l~~~~~~~~~~g-~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~   89 (394)
                      ++|.++...++...... ..+.++...|.++++ |+|+.+.+++.+...++.. .+++.|++.||+|+|++++++.++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~  104 (452)
T PRK11273         26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  104 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence            45665544444333222 234466778888888 9999999997777777765 48999999999999999999999998


Q ss_pred             HHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHH
Q 016123           90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLC  163 (394)
Q Consensus        90 ~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~  163 (394)
                      ++.+.+++....   ..+++.+++.+++.|++.+..+.+....+.+|||+ +||+++|+...+..+|+.+.+++.
T Consensus       105 i~~~~~~~~~~~---~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~  176 (452)
T PRK11273        105 AVMLFMGFVPWA---TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLF  176 (452)
T ss_pred             HHHHHHHhhhcc---cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            888877654211   12466677788899988887766667788899985 699999999999988876666654

>PRK03699 putative transporter; Provisional

Probab=99.83  E-value=2.9e-19  Score=176.19  Aligned_cols=151  Identities=12%  Similarity=0.085  Sum_probs=122.6

Q ss_pred             CCCcHHHHHHHHHHHHHhc-ccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHH
Q 016123           10 SAGKWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLE   87 (394)
Q Consensus        10 ~~~~w~~l~~~~~~~~~~g-~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~   87 (394)
                      +.+||+....+++..+..+ ..+.++...|++++++|+|.++.+++.+...++..+ .++.|++.||+|+|+++.++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~   81 (394)
T PRK03699          2 NSNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFAL   81 (394)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3466766666666555544 356788899999999999999999977777777755 78999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhh
Q 016123           88 GLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSAL  166 (394)
Q Consensus        88 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~  166 (394)
                      ..++..+..+.       ++++.+++.+++.|++.+..+......+.+++|+ +||.++++..+..++|+.+.+.+...+
T Consensus        82 ~~i~~~l~~~~-------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  154 (394)
T PRK03699         82 MILAVAGLMFS-------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL  154 (394)
T ss_pred             HHHHHHHHHHc-------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888877653       4677888889999998887777777888999985 699999999888889888888776655


Q ss_pred             c
Q 016123          167 F  167 (394)
Q Consensus       167 ~  167 (394)
                      +
T Consensus       155 ~  155 (394)
T PRK03699        155 L  155 (394)
T ss_pred             H
Confidence            4

>TIGR00895 2A0115 benzoate transport

Probab=99.83  E-value=7.3e-20  Score=178.91  Aligned_cols=182  Identities=20%  Similarity=0.159  Sum_probs=139.1

Q ss_pred             CCCcHHHHHHHHHHHHHhcc-cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHH
Q 016123           10 SAGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLE   87 (394)
Q Consensus        10 ~~~~w~~l~~~~~~~~~~g~-~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~   87 (394)
                      .+++|..+..+++..+..+. .+.++.+.|.+.+++|++..+.+++.+...++... .++.|++.||+|+|+.+.++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   91 (398)
T TIGR00895        12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL   91 (398)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            34566666666655554443 35667788899999999999999977777777654 79999999999999999999998


Q ss_pred             HHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhh
Q 016123           88 GLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSAL  166 (394)
Q Consensus        88 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~  166 (394)
                      .+++..+..+.       ++++.+++.+++.|++.+..+......+.+++|+ +|+++.|+...+..+|..+.+.+...+
T Consensus        92 ~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  164 (398)
T TIGR00895        92 FSVFTLLCALA-------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL  164 (398)
T ss_pred             HHHHHHHHHHc-------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence            88888776543       3677778889999999988888888899999984 799999999999999999998888777


Q ss_pred             cCCChhHHHHHHH-HHHHHHHHhhhhcccccCC
Q 016123          167 FADDPAKFLFMLA-IVPFVVCLGAIFFLRETTP  198 (394)
Q Consensus       167 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~p~  198 (394)
                      .+...|+..+.+. +...+..++..+++|++|+
T Consensus       165 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (398)
T TIGR00895       165 IPVFGWRSLFYVGGIAPLLLLLLLMRFLPESID  197 (398)
T ss_pred             hhcccceeehhhhhhHHHHHHHHHHHhCCCCCh
Confidence            7654454433333 4555555555556666554

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.83  E-value=8.2e-19  Score=173.12  Aligned_cols=157  Identities=9%  Similarity=-0.017  Sum_probs=125.6

Q ss_pred             ccCcCCCCcHHHHHHHHHHHHHhc-ccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHH
Q 016123            5 VSYTSSAGKWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILL   82 (394)
Q Consensus         5 ~~~~~~~~~w~~l~~~~~~~~~~g-~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~   82 (394)
                      .+++..|+.|..+........+.. ..|....+.|++.+++|+|+++.++..+...++.. .+++.|++.||+|||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~   89 (394)
T PRK10213         10 GADAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVI   89 (394)
T ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHH
Confidence            345566778876655555433332 34554456788999999999999996666666664 5899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHH
Q 016123           83 IGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTD  161 (394)
Q Consensus        83 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~  161 (394)
                      .+.++.+++..+..+.       ++++.+++.|++.|++.+..++.....+.+++| ++|+++.++..++.++|..+.++
T Consensus        90 ~~~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~  162 (394)
T PRK10213         90 LFAVLLTLSCLLVSFA-------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAP  162 (394)
T ss_pred             HHHHHHHHHHHHHHHH-------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988876653       468899999999999999887788888899998 57999999999999999998888


Q ss_pred             HHHhhcC
Q 016123          162 LCSALFA  168 (394)
Q Consensus       162 i~~~~~~  168 (394)
                      +...+.+
T Consensus       163 l~~~l~~  169 (394)
T PRK10213        163 LGSFLGE  169 (394)
T ss_pred             HHHHHHh
Confidence            8776654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.82  E-value=4.6e-19  Score=180.34  Aligned_cols=190  Identities=13%  Similarity=0.050  Sum_probs=138.9

Q ss_pred             CcHHHHHHHHHHHHHhccc-ccchhcHHHHHHHc-----CCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHH
Q 016123           12 GKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLM-----NLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIG   84 (394)
Q Consensus        12 ~~w~~l~~~~~~~~~~g~~-y~~~~~~~~l~~~~-----g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g   84 (394)
                      +++.++..+.+..+..|.. ...+...|.+.+++     +.+..+.+++.....++... .++.|++.||+|||+++.++
T Consensus        13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~   92 (502)
T TIGR00887        13 QHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGME   92 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            3444444444444444432 23344556665542     34556667777777777765 79999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHH
Q 016123           85 SLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLC  163 (394)
Q Consensus        85 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~  163 (394)
                      .++..++.++.+++... .+..+++.++++|++.|++.|..++....++++++| ++||+++++......+|..+.+.+.
T Consensus        93 ~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~  171 (502)
T TIGR00887        93 LIIMIIATVASGLSPGS-SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA  171 (502)
T ss_pred             HHHHHHHHHHHHHccCc-ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888776654111 000125678889999999999988888999999999 5699999999999888887776655


Q ss_pred             HhhcC-----------------------CChhHHHHHHHHHHHHHHHhhhhcccccCCCCCc
Q 016123          164 SALFA-----------------------DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTV  202 (394)
Q Consensus       164 ~~~~~-----------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~  202 (394)
                      ..+..                       ++.||.++++++++.++.++..+++||+|++...
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~  233 (502)
T TIGR00887       172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTAD  233 (502)
T ss_pred             HHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            43321                       1359999999999999988888999999998653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.82  E-value=1.2e-19  Score=175.93  Aligned_cols=129  Identities=18%  Similarity=0.143  Sum_probs=110.9

Q ss_pred             cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (394)
Q Consensus        30 ~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  108 (394)
                      ...++...|.+++++|+|..+.+++.+...++... .++.|++.||+|+|+++.++.++.+++.++..++       +++
T Consensus        11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~   83 (379)
T TIGR00881        11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-------TSL   83 (379)
T ss_pred             HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-------hhH
Confidence            35667778889999999999999987777777765 8999999999999999999999999988887764       367


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHh
Q 016123          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSA  165 (394)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~  165 (394)
                      +.+++.+++.|++.+..++.....+.+++|+ +|+++.|+...+..+|..+.+++...
T Consensus        84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  141 (379)
T TIGR00881        84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLF  141 (379)
T ss_pred             HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHH
Confidence            8888899999999988888888899999985 79999999999999999988854433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.82  E-value=7.7e-19  Score=170.59  Aligned_cols=266  Identities=15%  Similarity=0.133  Sum_probs=171.1

Q ss_pred             cccchhcHHH-HHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCc-
Q 016123           30 NYTFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPL-  106 (394)
Q Consensus        30 ~y~~~~~~~~-l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~-  106 (394)
                      .+.++.+.|. +++++|+|..+.+++.+...++..+ .++.|++.||+|+|+.+.++.++..++.+.+.+.       + 
T Consensus        17 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-------~~   89 (366)
T TIGR00886        17 WFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA-------VQ   89 (366)
T ss_pred             HHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-------hh
Confidence            4567778885 8999999999999987777777764 8999999999999999999999999998887654       3 


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016123          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVV  185 (394)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v  185 (394)
                      +++.+++.+++.|++.+. +.+....+.+|+| ++|+++.++......+|..+.+.+...+...                
T Consensus        90 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~----------------  152 (366)
T TIGR00886        90 SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS----------------  152 (366)
T ss_pred             hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH----------------
Confidence            677888889999988654 4566788899998 5799999998866666665555443332210                


Q ss_pred             HHhhhhcccccCCCCCccccccccchhHh-HHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhccccccc
Q 016123          186 CLGAIFFLRETTPASTVDEEKEEAKYFSI-INTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIK  264 (394)
Q Consensus       186 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~  264 (394)
                            +.+..+      +....+||..+ ...+.+...                           +.......    .+
T Consensus       153 ------~~~~~~------~~~~~~w~~~~~~~~~~~~~~---------------------------~~~~~~~~----~~  189 (366)
T TIGR00886       153 ------LIFGAG------LPAHLAWGWAFVIVPAGILLL---------------------------PALLIFFV----GA  189 (366)
T ss_pred             ------HHhccc------ccccccccchhHHHHHHHHHH---------------------------HHHHHHHh----cc
Confidence                  000000      00134677654 211111000                           00000000    11


Q ss_pred             ccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhc
Q 016123          265 SWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCG  344 (394)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~  344 (394)
                       ++|++.+.    +  ++.+.   +++             ...  .   ++    ....+.++.+|+|++|.+.+.+++.
T Consensus       190 -~~~~~~~~----~--~~~~~---~~~-------------~~~--~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~  237 (366)
T TIGR00886       190 -DTPPGKPA----T--GKLSF---KGA-------------RWS--V---GT----GALGDQLKVFRDRHTWILALLYSVT  237 (366)
T ss_pred             -cCCccccc----c--hhccc---ccc-------------ccc--c---cc----hhHHHHHHHHhccchhhHHHHHHHH
Confidence             11110000    0  00000   000             000  0   00    0011457889999999999888877


Q ss_pred             ccceeeeeeChHHHHHH-hCCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          345 VGTGLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       345 ~g~g~~~~~n~~~i~~~-~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      .+....+.+..+++.++ .|.+  ++..+.++..+.+.++|+++|+++||++|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~  290 (366)
T TIGR00886       238 FGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGG  290 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhcc
Confidence            66666666777778765 4766  35567888899999999999999999986

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.82  E-value=3.4e-18  Score=173.72  Aligned_cols=314  Identities=14%  Similarity=0.051  Sum_probs=197.6

Q ss_pred             CcHHHHHHHHHHHHHhcc-cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHH
Q 016123           12 GKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGL   89 (394)
Q Consensus        12 ~~w~~l~~~~~~~~~~g~-~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~   89 (394)
                      |+|.++...++..+.... ....++-.|++.+++|.+..+.+|+.+...++.. ..++.|++.||+|||++++++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~   82 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFG   82 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            466665555554443322 3455667899999999999999998777777765 48999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhc-c-cCCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123           90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNF-R-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus        90 ~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~F-p-~~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      ++.+.++.+       ++++.++++|++.|+|.+..++.....+.++| | ++|+++.|+..+..++|..+.+.+...+.
T Consensus        83 ~~~~~~~~a-------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~  155 (495)
T PRK14995         83 LASLAAAFS-------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL  155 (495)
T ss_pred             HHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999887764       47888999999999999887766677777888 4 57999999999999999999999888888


Q ss_pred             CCChhHHHHHHHHHHHHHHH-hhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHH
Q 016123          168 ADDPAKFLFMLAIVPFVVCL-GAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGI  246 (394)
Q Consensus       168 ~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  246 (394)
                      +...|++.+++.....++.+ +..+.+|+.|++..    ++.++.........+.+..|....  .... ..+...  +.
T Consensus       156 ~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~----~~~d~~g~~~~~~~~~~l~~~~~~--~~~~-~~~~~~--~~  226 (495)
T PRK14995        156 EHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRD----QPLNLGHALMLIVAILLLVYSAKT--ALKG-FLSLWV--TS  226 (495)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC----CCCChHhHHHHHHHHHHHHHHHHh--cccc-CCchHH--HH
Confidence            77677776666554444333 33444555443211    112221111111100000111000  0000 000000  00


Q ss_pred             HHHHHHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHH
Q 016123          247 LIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIF  326 (394)
Q Consensus       247 ~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  326 (394)
                      ..+ +.....+.. . ...                                       |..      .+.|     .-..
T Consensus       227 ~~~-~~~~~~l~~-f-~~~---------------------------------------e~~------~~~p-----~~~~  253 (495)
T PRK14995        227 LTL-LTGALLLGL-F-IRT---------------------------------------QLA------ASRP-----MIDM  253 (495)
T ss_pred             HHH-HHHHHHHHH-H-HHH---------------------------------------Hhc------CCCC-----CcCH
Confidence            000 000000000 0 000                                       000      0011     1125


Q ss_pred             HHhhchhHHHHHHHHHhcccceeeeeeChHHHHHH-hCCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          327 EAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       327 ~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~-~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      +.+|+|.|+...+..++...........++.+.+. .|++  ++..+....++...++.++.|++.||++|
T Consensus       254 ~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~  324 (495)
T PRK14995        254 RLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGL  324 (495)
T ss_pred             HHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            68899999887777666555444444555666665 5776  46678888999999999999999999985

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.81  E-value=1.4e-18  Score=173.48  Aligned_cols=152  Identities=11%  Similarity=-0.096  Sum_probs=105.4

Q ss_pred             CCCCcHHHHHHHHHHHHHhcc-cccchhcHHHHHHHcC---CChhhhHHH---HHHHHhhhhh-hhhhHhhhhccCchHH
Q 016123            9 SSAGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMN---LTQLELNNL---SVVKDIGKAF-GLLAGLASDRIPAPII   80 (394)
Q Consensus         9 ~~~~~w~~l~~~~~~~~~~g~-~y~~~~~~~~l~~~~g---~s~~~~~~~---~~~~~~~~~~-~~~~G~l~Dr~G~r~~   80 (394)
                      +++++|..+..+.+....... .+.++...|.+.++++   .+..+.+..   .....++..+ +++.|++.||+|||++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~   95 (432)
T PRK10406         16 DTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS   95 (432)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence            445666555555554444332 4457778888999984   555544332   2233333333 7899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHH
Q 016123           81 LLIGSLEGLVGYGAQWLVVSRKI--QPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTA  157 (394)
Q Consensus        81 ~~~g~~~~~~g~~~~~~~~~~~~--~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~  157 (394)
                      +.++.++++++.++.+++. +..  ...++..+.+.|++.|+|.|..++...+.+.||+| ++||++.++...+...|..
T Consensus        96 l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~  174 (432)
T PRK10406         96 MLISVCMMCFGSLVIACLP-GYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQL  174 (432)
T ss_pred             HHHHHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHH
Confidence            9999999999988876541 000  00123457779999999999888888999999998 5799999988777666655


Q ss_pred             HHHH
Q 016123          158 IFTD  161 (394)
Q Consensus       158 i~~~  161 (394)
                      +.+.
T Consensus       175 ~~~~  178 (432)
T PRK10406        175 LALL  178 (432)
T ss_pred             HHHH
Confidence            5443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.81  E-value=1.5e-18  Score=172.51  Aligned_cols=277  Identities=13%  Similarity=0.070  Sum_probs=174.1

Q ss_pred             HHHHHHHHHHHH-HhcccccchhcHHHHHH-HcCCChhhhHHHHHHHHhhh-hhhhhhHhhhhccCchHHHHHHHHHHHH
Q 016123           14 WLGFVTAVWVQA-ISGNNYTFSNYSDALKT-LMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGSLEGLV   90 (394)
Q Consensus        14 w~~l~~~~~~~~-~~g~~y~~~~~~~~l~~-~~g~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~~   90 (394)
                      |+.+..+.+... +...-+.++...+.+.+ ++|+|++|.+++.+...+.. +..++.|++.||+|+|+++.++.++..+
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            445555554432 22234667777777765 89999999999666555554 4568889999999999999999999998


Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123           91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (394)
Q Consensus        91 g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~  169 (394)
                      ..+..+++..+..  ++++.+++.+++.|++ +..+.+....+++|||+ +||+++|+..+...+|..+...+...+.. 
T Consensus       113 ~~~~~~~a~~~~~--~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~-  188 (462)
T PRK15034        113 PCVWLGIAVQNPN--TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIF-  188 (462)
T ss_pred             HHHHHHHHHcccC--CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHH-
Confidence            8887776432211  4688999999999998 55778899999999995 69999999976555666655544332210 


Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHH
Q 016123          170 DPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILII  249 (394)
Q Consensus       170 ~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (394)
                                     ..+...+--...+...    ....+++........+        .                  + 
T Consensus       189 ---------------~~l~~~~G~~~~~~~~----g~~~~~~~~~~~~~~~--------~------------------i-  222 (462)
T PRK15034        189 ---------------VPVFAFLGVNGVPQAD----GSVMSLANAAWIWVPL--------L------------------A-  222 (462)
T ss_pred             ---------------HHHHHHhccccccccc----cchHHHHHHHHHHHHH--------H------------------H-
Confidence                           0000001000000000    0133455433222110        0                  0 


Q ss_pred             HHHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHh
Q 016123          250 LLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAM  329 (394)
Q Consensus       250 ~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l  329 (394)
                       +...+...    ..+    +.          +.++                    .+              -...++.+
T Consensus       223 -v~~i~~~~----~~~----~~----------~~~~--------------------~~--------------~~~~~~vl  249 (462)
T PRK15034        223 -IATIAAWS----GMN----DI----------ASSR--------------------AS--------------IADQLPVL  249 (462)
T ss_pred             -HHHHHHHH----hCC----Cc----------cccc--------------------cC--------------HHHHHHHh
Confidence             00000000    110    00          0000                    00              01346789


Q ss_pred             hchhHHHHHHHHHhcccceeeeeeChHHHHHHhCCCcc--hhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          330 WTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       330 ~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~~G~~~~--a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      |+|+-|++.+.+++..+....+.+.++++.++ .+++.  .....+..+...++|.+.|+++||+|+
T Consensus       250 k~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~  315 (462)
T PRK15034        250 QRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGG  315 (462)
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCc
Confidence            99999999999999988888787778888776 34432  223445678899999999999999986

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.81  E-value=3.8e-19  Score=179.09  Aligned_cols=251  Identities=10%  Similarity=0.031  Sum_probs=169.8

Q ss_pred             HcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhh
Q 016123           43 LMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNS  121 (394)
Q Consensus        43 ~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g  121 (394)
                      +++++..+.+++.+...++... +++.|++.||+|+|+++.++.++.+++.++..+...     .+++.+++.|++.|++
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~~~G~~  144 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG-----GGIALVVFCRVIQGLA  144 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH-----cCchHHHHHHHHHHHh
Confidence            7899999999987777777765 899999999999999999999988888776544321     2466677889999999


Q ss_pred             hhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhhcccccCCCC
Q 016123          122 TTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPAS  200 (394)
Q Consensus       122 ~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~  200 (394)
                      .+..++.....+.+|+| ++||+++|+..++..+|..+.+++...+.+..                              
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~------------------------------  194 (465)
T TIGR00894       145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW------------------------------  194 (465)
T ss_pred             cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------------------
Confidence            99888888899999998 57999999999999999999988877665421                              


Q ss_pred             CccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhcccccccccccccCCCCCCchhh
Q 016123          201 TVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQ  280 (394)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (394)
                             .+||..+...+++.+..                       .++..     .    +.+++|++.+.+.+.|. 
T Consensus       195 -------~gw~~~f~i~~~~~~~~-----------------------~~~~~-----~----~~~~~p~~~~~~~~~~~-  234 (465)
T TIGR00894       195 -------GGWPMIFYVFGIVGCAW-----------------------SLLWF-----V----FPADDPSIHPCISKFEK-  234 (465)
T ss_pred             -------CCCCeehhhhhHHHHHH-----------------------HHHHH-----H----HhcCCcccCCCCCHHHH-
Confidence                   24554432222110000                       00000     0    00011111000000000 


Q ss_pred             hcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhcccceeeeeeChHHHHH
Q 016123          281 QVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGL  360 (394)
Q Consensus       281 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~  360 (394)
                         +.                  .++.  .+. ++.+. .+...+++.+|++.+|.+.+..++.......+...++.+++
T Consensus       235 ---~~------------------i~~~--~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~  289 (465)
T TIGR00894       235 ---KY------------------INSS--LQG-QKGST-RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFIS  289 (465)
T ss_pred             ---HH------------------HHhh--ccc-ccCCC-CCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               00                  0000  000 00000 11235789999999999999888877766667778888876


Q ss_pred             H-hCCC--cchhhHHHHHHHHHHhhhhhccccchhc
Q 016123          361 A-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFI  393 (394)
Q Consensus       361 ~-~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~  393 (394)
                      + +|.+  +.....++..+++.+++++.|+++||++
T Consensus       290 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~  325 (465)
T TIGR00894       290 WVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLK  325 (465)
T ss_pred             HHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 5776  3567778889999999999999999875

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.80  E-value=7.1e-19  Score=175.88  Aligned_cols=283  Identities=16%  Similarity=0.096  Sum_probs=176.5

Q ss_pred             cHHHHHHHHHHHHHhc-ccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHH
Q 016123           13 KWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLV   90 (394)
Q Consensus        13 ~w~~l~~~~~~~~~~g-~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~   90 (394)
                      +|..+...++...... ....+....|.+++ +|.|+.+.+++.+...++... .++.|++.||+|+|+++.++.++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence            4555444444433322 23445555676765 699999999977777777754 89999999999999999999998888


Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123           91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (394)
Q Consensus        91 g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~  169 (394)
                      +.+...... . . ..+++.+++.+++.|++.+..+.+....+.+||| ++||+++|+..++.++|+.+.+++.......
T Consensus       104 ~~~~~~~~~-~-~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~  180 (438)
T TIGR00712       104 VMLLMGFVP-W-A-TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW  180 (438)
T ss_pred             HHHHHhccc-c-c-cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            877654421 0 0 1246667778889998888877777788889997 5799999999999999999988876654432


Q ss_pred             -ChhHHHHHH-HHHHHHHHHhhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHH
Q 016123          170 -DPAKFLFML-AIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGIL  247 (394)
Q Consensus       170 -~~~~~~~~~-~~~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  247 (394)
                       ..|+..+.+ ++...+..++..+++|+.|++...                                             
T Consensus       181 ~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------------------------------  215 (438)
T TIGR00712       181 FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL---------------------------------------------  215 (438)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC---------------------------------------------
Confidence             123222222 222222222222222222211000                                             


Q ss_pred             HHHHHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHH
Q 016123          248 IILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFE  327 (394)
Q Consensus       248 ~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  327 (394)
                                             ++.    ++.+.+.+  .+.             .+++      ++ +...++...++
T Consensus       216 -----------------------~~~----~~~~~~~~--~~~-------------~~~~------~~-~~~~~~~~~~~  246 (438)
T TIGR00712       216 -----------------------PPI----EEYRNDYP--DDY-------------NEKA------EQ-ELTAKEIFMQY  246 (438)
T ss_pred             -----------------------CCc----hhcccccc--ccc-------------cccc------cc-ccchHHHHHHH
Confidence                                   000    00000000  000             0000      00 00001112235


Q ss_pred             HhhchhHHHHHHHHHhcccceeeeeeChHHHHHH-hCCC--cchhhHHHHHHHHHHhhhhhccccchhc
Q 016123          328 AMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFI  393 (394)
Q Consensus       328 ~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~-~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~  393 (394)
                      .+|++.+|.+.+..++.......+...++.+.++ .|.+  .+.+..+++++.+.+|++++|+++||++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~  315 (438)
T TIGR00712       247 VLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF  315 (438)
T ss_pred             HccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7899999999887766655545566788888887 4766  3567788899999999999999999984

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.80  E-value=1.3e-18  Score=182.31  Aligned_cols=185  Identities=13%  Similarity=0.078  Sum_probs=150.6

Q ss_pred             CCcHHHHHHHHHHHHHhcc-cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHH
Q 016123           11 AGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG   88 (394)
Q Consensus        11 ~~~w~~l~~~~~~~~~~g~-~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~   88 (394)
                      +++|.+++...+..+..+. ....+...|.+++++|++..+.+++.+...++.++ +++.|++.||+|||++++++.++.
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            4567666665555554443 34566778899999999999999987777888765 799999999999999999999998


Q ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123           89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus        89 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      +++.++.+++       ++++.++++|++.|+|.+..++....++.+++| ++||+++++..++..+|+++.+.+...+.
T Consensus       243 ~i~~ll~afa-------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       243 GFFAFFSSFV-------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             HHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888777654       367888889999999999888888899999999 56999999999999999888877655443


Q ss_pred             CC-------------ChhHHHHHHHHHHHHHHHhhhhcccccCCCCCc
Q 016123          168 AD-------------DPAKFLFMLAIVPFVVCLGAIFFLRETTPASTV  202 (394)
Q Consensus       168 ~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~  202 (394)
                      +.             ..|+.++++++++.++.++..+++|++|++...
T Consensus       316 ~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~  363 (742)
T TIGR01299       316 PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLE  363 (742)
T ss_pred             HhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            21             357888888999999998889999999998653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.80  E-value=1.7e-18  Score=173.11  Aligned_cols=163  Identities=17%  Similarity=0.064  Sum_probs=126.3

Q ss_pred             chhcHHHHHHHcCCC--------hhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016123           33 FSNYSDALKTLMNLT--------QLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKI  103 (394)
Q Consensus        33 ~~~~~~~l~~~~g~s--------~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~  103 (394)
                      .+...+.+.++++.+        ..+.+++.+...++.. .+++.|++.||+|||++++++.++..++..+......   
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~---  123 (481)
T TIGR00879        47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF---  123 (481)
T ss_pred             hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc---
Confidence            344456666666665        8899997777777775 4899999999999999999999999988887754311   


Q ss_pred             CCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHH---HhhcCCChhHHHHHHH
Q 016123          104 QPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLC---SALFADDPAKFLFMLA  179 (394)
Q Consensus       104 ~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~---~~~~~~~~~~~~~~~~  179 (394)
                       ..+++.+++.|++.|+|.+..+......+.+++| ++|++++++...+..+|..+.+.+.   ....+...|+..+.++
T Consensus       124 -~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~  202 (481)
T TIGR00879       124 -ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQ  202 (481)
T ss_pred             -ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHH
Confidence             1245677889999999999888888889999998 5799999999999999999888877   3333445677777777


Q ss_pred             HHHHHHHHhhhhcccccCCC
Q 016123          180 IVPFVVCLGAIFFLRETTPA  199 (394)
Q Consensus       180 ~~~~~v~~~~~~~~~~~p~~  199 (394)
                      ++..++.++..+++|+.|+.
T Consensus       203 ~~~~~~~~~~~~~l~~~~~~  222 (481)
T TIGR00879       203 LIPAGLLFLGLFFLPESPRW  222 (481)
T ss_pred             HHHHHHHHHHHhcCCCChHH
Confidence            77777777777777776643

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00896 CynX cyanate transporter

Probab=99.80  E-value=2.8e-18  Score=166.49  Aligned_cols=241  Identities=12%  Similarity=0.043  Sum_probs=171.1

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      .+++...|++++++|+|.++.+++.+...++..+ +++.|++.||+|+|+++.++.++..++.... ..       ++.+
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~-------~~~~   88 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA-------PGTA   88 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-------ccHH
Confidence            4567789999999999999999987777777764 8999999999999999999998887776654 22       3567


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGA  189 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~  189 (394)
                      .+.+.+++.|+|.+.........+.+++|++|++++|+..++.++|..+.+.+...+.+..                   
T Consensus        89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~-------------------  149 (355)
T TIGR00896        89 LLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHS-------------------  149 (355)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------
Confidence            7777899999998877666667788999999999999999999999888877765543210                   


Q ss_pred             hhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhcccccccccccc
Q 016123          190 IFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLN  269 (394)
Q Consensus       190 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~  269 (394)
                                       ..+||..+...+++.+.                        ..+...    |.   .+     
T Consensus       150 -----------------~~~w~~~f~~~~~~~~~------------------------~~~~~~----~~---~~-----  176 (355)
T TIGR00896       150 -----------------GGHWQQALAWWALPALL------------------------ALLAWI----PQ---VR-----  176 (355)
T ss_pred             -----------------hhhHHHHHHHHHHHHHH------------------------HHHHHh----hh---hc-----
Confidence                             12366544322211000                        000001    10   00     


Q ss_pred             cCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhccccee
Q 016123          270 RKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGL  349 (394)
Q Consensus       270 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~  349 (394)
                      ++           .++                   +.+      +  +    +.+.++.+|+|.+|.+.+..++......
T Consensus       177 ~~-----------~~~-------------------~~~------~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (355)
T TIGR00896       177 RR-----------VAA-------------------NQT------T--T----RLTPVRIWRSPLAWQVTVFFGLQSGLYY  214 (355)
T ss_pred             cc-----------cCC-------------------CCC------C--C----CCCCchhhcCHhHHHHHHHHHHHHHHHH
Confidence            00           000                   000      0  0    1123567899999988777666555555


Q ss_pred             eeeeChHHHHHHhCCC--cchhhHHHHHHHHHHhhhhhccccchhc
Q 016123          350 AVMNNMGQIGLALGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFI  393 (394)
Q Consensus       350 ~~~~n~~~i~~~~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~  393 (394)
                      .+...++.+.++.|.+  +.....++..+...+||++.|+++||++
T Consensus       215 ~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~  260 (355)
T TIGR00896       215 SLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVK  260 (355)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhc
Confidence            6667788899888886  3667888999999999999999999984

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.79  E-value=8e-18  Score=165.22  Aligned_cols=130  Identities=12%  Similarity=0.036  Sum_probs=110.3

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      +......|.+++++|+|.++.++..+...++... +++.|++.||+|+|+++.++.++.+++.++..++       ++++
T Consensus        20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-------~~~~   92 (382)
T PRK10091         20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-------SSYL   92 (382)
T ss_pred             HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-------CcHH
Confidence            3455677899999999999999987777777765 8999999999999999999999999998877654       4788


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      .+++.|++.|++.+.........+.+++|+ +|++++|+..++..+|..+.+++...+.
T Consensus        93 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  151 (382)
T PRK10091         93 MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS  151 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence            889999999999887766666778899985 6999999999999999888888766554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.79  E-value=4.2e-18  Score=172.83  Aligned_cols=143  Identities=16%  Similarity=0.006  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHhcc-cccchhcHHHHHHHcCCChhh-hHH---H--HHHHHhhhhh-hhhhHhhhhccCchHHHHHHH
Q 016123           14 WLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLE-LNN---L--SVVKDIGKAF-GLLAGLASDRIPAPIILLIGS   85 (394)
Q Consensus        14 w~~l~~~~~~~~~~g~-~y~~~~~~~~l~~~~g~s~~~-~~~---~--~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~   85 (394)
                      +..+..+.+..+..+. ...++...|.+.++++.+..+ .++   +  .+...++..+ +++.|++.||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            4444445444444433 345566778888888654422 122   1  2333455544 789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCchHH--------HHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhH
Q 016123           86 LEGLVGYGAQWLVVSRKIQPLSYW--------QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLST  156 (394)
Q Consensus        86 ~~~~~g~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~  156 (394)
                      ++++++.++.+++       ++++        .+.++|++.|+|.|..+++...++++|+| ++||++.++...+..+|.
T Consensus        95 ~l~~i~~~~~a~~-------~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~  167 (490)
T PRK10642         95 VIMSISTFCIGLI-------PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGF  167 (490)
T ss_pred             HHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence            9999999988765       2443        36678999999999988889999999998 579999999988777776


Q ss_pred             HHHHHHH
Q 016123          157 AIFTDLC  163 (394)
Q Consensus       157 ~i~~~i~  163 (394)
                      .+.+.+.
T Consensus       168 ~lg~~~~  174 (490)
T PRK10642        168 VLGAGVV  174 (490)
T ss_pred             HHHHHHH
Confidence            6655443

>TIGR00898 2A0119 cation transport protein

Probab=99.79  E-value=5.1e-19  Score=179.91  Aligned_cols=162  Identities=16%  Similarity=0.221  Sum_probs=132.2

Q ss_pred             cccchhcHHHHHHHcCCC---hhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016123           30 NYTFSNYSDALKTLMNLT---QLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQP  105 (394)
Q Consensus        30 ~y~~~~~~~~l~~~~g~s---~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~  105 (394)
                      .|.++.+.+.+++|+|++   +.+.++..+...++..+ +++.|++.||+|||++++++.++..++.++.+++       
T Consensus       105 ~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~-------  177 (505)
T TIGR00898       105 EYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS-------  177 (505)
T ss_pred             EecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc-------
Confidence            355556778899999999   88999988888888865 7999999999999999999999998888777654       


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 016123          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV  184 (394)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~  184 (394)
                      ++++.+++.|++.|++.+..+......+.+++|+ +|+.+.++...+..+|..+.+.+. .++.+  |+..+++..++.+
T Consensus       178 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-~~~~~--wr~~~~~~~i~~~  254 (505)
T TIGR00898       178 PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVA-YFIPD--WRWLQLAVSLPTF  254 (505)
T ss_pred             ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhH--HHHHHHHHHHHHH
Confidence            4688888999999999998888888999999985 699999999888888877766554 33332  7777777767777


Q ss_pred             HHHhhhhcccccCCCCC
Q 016123          185 VCLGAIFFLRETTPAST  201 (394)
Q Consensus       185 v~~~~~~~~~~~p~~~~  201 (394)
                      +.++..+++|++|++..
T Consensus       255 ~~~~~~~~~~esp~~l~  271 (505)
T TIGR00898       255 LFFLLSWFVPESPRWLI  271 (505)
T ss_pred             HHHHHHHhcCCChHHHH
Confidence            77777788888887754

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.78  E-value=2.8e-18  Score=163.99  Aligned_cols=270  Identities=14%  Similarity=0.071  Sum_probs=182.5

Q ss_pred             CCCCcHHHHHHHHHHHH-HhcccccchhcHHHHHHHcCCChhhhHHH-HHHHHhhhhhhhhhHhhhhccCchHHHHHHHH
Q 016123            9 SSAGKWLGFVTAVWVQA-ISGNNYTFSNYSDALKTLMNLTQLELNNL-SVVKDIGKAFGLLAGLASDRIPAPIILLIGSL   86 (394)
Q Consensus         9 ~~~~~w~~l~~~~~~~~-~~g~~y~~~~~~~~l~~~~g~s~~~~~~~-~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~   86 (394)
                      .++.+++.+..+.+... +...-+.++...+.+++++|+|+.|.+++ .+....|..+=++.|.+.||+|+|+...++.+
T Consensus         8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~   87 (417)
T COG2223           8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSML   87 (417)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHH
Confidence            44556666666666543 22223566777788999999999999995 45555556678999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHh
Q 016123           87 EGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSA  165 (394)
Q Consensus        87 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~  165 (394)
                      +..+-.+..+++.+.    +++|++.+.+++.|++.+ .+...+..+++|||| ++|+|+|+.-+| .+|..+...+...
T Consensus        88 l~~IP~~~~~~a~~~----~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g~G-N~G~av~q~~~P~  161 (417)
T COG2223          88 LLLIPCLGLAFAVTY----PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAGAG-NLGVAVAQLVAPL  161 (417)
T ss_pred             HHHHHHHHHHHHccC----CchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhccc-cccHHHHHHHHHH
Confidence            998888877776432    457888989999998755 456788899999995 699999999844 4666655444433


Q ss_pred             hcCCChhHHHHHHHHHHHHHHHhhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHH
Q 016123          166 LFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSG  245 (394)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  245 (394)
                      +...                  .+                 ...|+....        +|....                
T Consensus       162 v~~~------------------~g-----------------~~~w~~~~~--------i~~~~l----------------  182 (417)
T COG2223         162 VAVA------------------FG-----------------FLAWRNVAG--------IYVVAL----------------  182 (417)
T ss_pred             HHHH------------------Hh-----------------hHHHHHHHH--------HHHHHH----------------
Confidence            3210                  00                 012443211        111100                


Q ss_pred             HHHHHHHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchH
Q 016123          246 ILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTI  325 (394)
Q Consensus       246 ~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  325 (394)
                          ++..-.....   ++ +.|+             .++                            ..++.  .+...
T Consensus       183 ----~v~~v~~~~~---~~-d~p~-------------~r~----------------------------~~~~~--~~~~~  211 (417)
T COG2223         183 ----AIAAVLAWLG---MN-DVPE-------------HRA----------------------------SVKPQ--LPAQL  211 (417)
T ss_pred             ----HHHHHHHHHH---hC-CChh-------------hhc----------------------------ccccc--chhHH
Confidence                0000000000   11 1000             011                            00000  01345


Q ss_pred             HHHhhchhHHHHHHHHHhcccceeeeeeChHHHHHHh-CCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          326 FEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL-GYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       326 ~~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~~-G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      +...|+++-|.+.+.++...|.-..+.+.++.+.++. |.+  ++.....++...+.+-|.+.|++|||+|.
T Consensus       212 ~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg  283 (417)
T COG2223         212 KAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGG  283 (417)
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccc
Confidence            6778899999999999999999999999999999875 665  45689999999999999999999999974

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.78  E-value=7.3e-18  Score=164.63  Aligned_cols=129  Identities=14%  Similarity=0.023  Sum_probs=109.5

Q ss_pred             cchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHH
Q 016123           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (394)
Q Consensus        32 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  110 (394)
                      .+....|.+++++|.|..+.+++.+...++... +++.|++.||+|+|+++.++.++..++.......       ++++.
T Consensus        23 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~   95 (385)
T TIGR00710        23 MYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-------NNIET   95 (385)
T ss_pred             HhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------ccHHH
Confidence            344556889999999999999987777777764 8999999999999999999999998888877654       36778


Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      +++.+++.|++.+...+.....+.+++|+ +|+++.|+......+|..+.+.+...+.
T Consensus        96 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  153 (385)
T TIGR00710        96 LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL  153 (385)
T ss_pred             HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999998888888889999985 6999999999999999888887766554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.78  E-value=5.8e-17  Score=156.37  Aligned_cols=261  Identities=14%  Similarity=0.138  Sum_probs=201.3

Q ss_pred             CCCCcHHHHHHHHHHHHHhcc-cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHH
Q 016123            9 SSAGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSL   86 (394)
Q Consensus         9 ~~~~~w~~l~~~~~~~~~~g~-~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~   86 (394)
                      ..++.|..+..-.+..++.|+ -+...-..|++.+++|.|..+.++..+.+.++.. .+|+...+.||+.||++++....
T Consensus         7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~   86 (394)
T COG2814           7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA   86 (394)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence            344556666555555555554 4666677899999999999999997666666665 58999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHh
Q 016123           87 EGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSA  165 (394)
Q Consensus        87 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~  165 (394)
                      ++.++.++.+++       ++++.+.+.|++.|+..|...........+.-| +||++|+++..+|..++..+..|+...
T Consensus        87 lFi~~n~l~alA-------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~  159 (394)
T COG2814          87 LFIVSNLLSALA-------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF  159 (394)
T ss_pred             HHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence            999999999886       689999999999999999988888888999997 589999999999999999999888766


Q ss_pred             hcCCChhHHHHHHHHHHHHHHHhhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHH
Q 016123          166 LFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSG  245 (394)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  245 (394)
                      +=+                                      ..+||..|.....+.+++.+.+.                
T Consensus       160 ig~--------------------------------------~~GWR~~F~~ia~l~ll~~~~~~----------------  185 (394)
T COG2814         160 LGQ--------------------------------------LFGWRATFLAIAVLALLALLLLW----------------  185 (394)
T ss_pred             HHH--------------------------------------HhhHHHHHHHHHHHHHHHHHHHH----------------
Confidence            532                                      47889887655443322211110                


Q ss_pred             HHHHHHHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchH
Q 016123          246 ILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTI  325 (394)
Q Consensus       246 ~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  325 (394)
                           ..+|                |++        ..++                            .  +  .+-.+.
T Consensus       186 -----~~lP----------------~~~--------~~~~----------------------------~--~--~~~~~~  204 (394)
T COG2814         186 -----KLLP----------------PSE--------ISGS----------------------------L--P--GPLRTL  204 (394)
T ss_pred             -----HhCC----------------Ccc--------CCCC----------------------------C--C--cchhHH
Confidence                 0011                000        0000                            0  0  001234


Q ss_pred             HHHhhchhHHHHHHHHHhcccceeeeeeChHHHHHHh-CCC--cchhhHHHHHHHHHHhhhhhccccch
Q 016123          326 FEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL-GYV--DVSIFVSLTSIWGFFGRIISGSVSEY  391 (394)
Q Consensus       326 ~~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~~-G~~--~~a~~vsl~si~~~~GRl~~G~lsD~  391 (394)
                      .+.+|+|..|..++..++..+...+....+.+++++. |++  +.+...-+++++..+|-++.|.++||
T Consensus       205 ~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr  273 (394)
T COG2814         205 LRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR  273 (394)
T ss_pred             HHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            6789999999999999999999889999999999986 555  36678888999999999999999999

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.77  E-value=9.5e-18  Score=169.25  Aligned_cols=187  Identities=14%  Similarity=0.081  Sum_probs=127.7

Q ss_pred             cHHHHHHHHHHHHHhccc-ccchhcHHHHHHHc--------CCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHH
Q 016123           13 KWLGFVTAVWVQAISGNN-YTFSNYSDALKTLM--------NLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILL   82 (394)
Q Consensus        13 ~w~~l~~~~~~~~~~g~~-y~~~~~~~~l~~~~--------g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~   82 (394)
                      ++..++.+.+..+..|.. ...+...+.+++++        +++..+.+++.+...++..+ +++.|++.||+|||++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~   89 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK   89 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            444444444444444432 23333445567766        89999999987777888765 899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH---hc-cCC-chHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhH
Q 016123           83 IGSLEGLVGYGAQWLVVS---RK-IQP-LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLST  156 (394)
Q Consensus        83 ~g~~~~~~g~~~~~~~~~---~~-~~~-~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~  156 (394)
                      ++.+++.++.+..++...   .. .++ ..++.++++|++.|++.|..++....++.+|+| ++||+++|+...+..+|.
T Consensus        90 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~  169 (479)
T PRK10077         90 IAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQ  169 (479)
T ss_pred             HHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHH
Confidence            999999888777654210   00 000 124556779999999999988888999999998 569999999999988888


Q ss_pred             HHHHHHHHhhc--------CCChhHHHHHHHHHHHHHHHhhhhcccccCCC
Q 016123          157 AIFTDLCSALF--------ADDPAKFLFMLAIVPFVVCLGAIFFLRETTPA  199 (394)
Q Consensus       157 ~i~~~i~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~  199 (394)
                      .+.+.+...+.        +...|+..+++..++.++.++..+++|+.|++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~  220 (479)
T PRK10077        170 LVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRY  220 (479)
T ss_pred             HHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence            77654433222        12245555555555555555555555655543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.77  E-value=2.4e-17  Score=166.40  Aligned_cols=289  Identities=13%  Similarity=0.076  Sum_probs=186.4

Q ss_pred             cchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHH
Q 016123           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (394)
Q Consensus        32 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  110 (394)
                      ..+...|.+.+++|.+..+.+++.+...++... .++.|++.||+|||++++++.++..++..++..+       ++++.
T Consensus        20 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~   92 (485)
T TIGR00711        20 IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-------PNLEL   92 (485)
T ss_pred             HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc-------CCHHH
Confidence            445678899999999999999987777777765 7999999999999999999999999988877643       46788


Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH-h
Q 016123          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL-G  188 (394)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~-~  188 (394)
                      +.+.|++.|++.+...+.....+.+++| ++||++.++...+..+|..+.+.+...+.+...|+..+++.....++.+ +
T Consensus        93 l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~  172 (485)
T TIGR00711        93 MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVV  172 (485)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHH
Confidence            8889999999998887888889999998 5799999999999999999988888777776566665555544444333 3


Q ss_pred             hhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhccccccccccc
Q 016123          189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL  268 (394)
Q Consensus       189 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~  268 (394)
                      ..+.+|++++...+    +.++........    .                       ...+..     .    ..    
T Consensus       173 ~~~~~~~~~~~~~~----~~d~~g~~l~~~----~-----------------------~~~~~~-----~----~~----  208 (485)
T TIGR00711       173 AFFILPRDKPAASE----NFDFLGLLLLSV----G-----------------------LGSLLY-----G----LS----  208 (485)
T ss_pred             HHHHcCCccccccC----CCcHHHHHHHHH----H-----------------------HHHHHH-----H----Hh----
Confidence            33444443322111    122211110000    0                       000000     0    00    


Q ss_pred             ccCCCCCCchhhhcccCCCCCCCCCCccchhhhc------chhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHH
Q 016123          269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVED------TVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFL  342 (394)
Q Consensus       269 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~  342 (394)
                       +.+.+      +..++   ++    ........      -...+  ..  +++     +....+.+|+++||...+..+
T Consensus       209 -~~~~~------~~~~~---~~----~~~~~~~~~~~~~~~~~~~--~~--~~~-----~~~~~~~~~~~~~~~~~~~~~  265 (485)
T TIGR00711       209 -EGPER------GWFDS---NE----ILILSITGLVAIIAFVVWE--LT--DDN-----PLVDLRLFKYRNFTIGCVYMS  265 (485)
T ss_pred             -hCCCC------CCCCc---hH----HHHHHHHHHHHHHHHHHHH--Hc--CCC-----CccCHHHHcCCChHHHHHHHH
Confidence             00000      00000   00    00000000      00000  00  111     122256889999999877777


Q ss_pred             hcccceeeeeeChHHHHHH-hCCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          343 CGVGTGLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       343 ~~~g~g~~~~~n~~~i~~~-~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      +.........+.++.+.++ .|++  ++.......++...+++++.|++.||++|
T Consensus       266 ~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~  320 (485)
T TIGR00711       266 LLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDP  320 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            6655555555667777776 5776  35677788889999999999999999986

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00897 2A0118 polyol permease family

Probab=99.77  E-value=4e-17  Score=161.41  Aligned_cols=247  Identities=11%  Similarity=0.018  Sum_probs=158.3

Q ss_pred             cHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHH
Q 016123           36 YSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVF  114 (394)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~  114 (394)
                      +.+++.+++|+|.++.++..+...++.. .+++.|++.||+|||+++..+.++.+++..++...  ... ..+++.+++.
T Consensus        35 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~~~  111 (402)
T TIGR00897        35 WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVF--GLG-HANYPLILLF  111 (402)
T ss_pred             hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH--hcc-CccHHHHHHH
Confidence            5567778899999999997777777765 48999999999999999999999988886654321  100 1356777778


Q ss_pred             HHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHH-HHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhhc
Q 016123          115 LCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAI-FTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF  192 (394)
Q Consensus       115 ~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i-~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  192 (394)
                      +++.|+|.+.........+.+++| ++||+++|+..++.++|..+ .+.+...+.+.                       
T Consensus       112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~-----------------------  168 (402)
T TIGR00897       112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA-----------------------  168 (402)
T ss_pred             HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----------------------
Confidence            899998887665555566777776 68999999999999888644 44443333321                       


Q ss_pred             ccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhcccccccccccccCC
Q 016123          193 LRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKR  272 (394)
Q Consensus       193 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~  272 (394)
                                     .+++..+. ..    ..+..+                      . ..+...    +.++++ +++
T Consensus       169 ---------------~g~~~~~~-~~----~~~~~~----------------------~-~~~~~~----~~~~~~-~~~  200 (402)
T TIGR00897       169 ---------------FGEMNTLW-SA----LAFVLT----------------------G-GVIALF----SNKDIF-TPQ  200 (402)
T ss_pred             ---------------cchHHHHH-HH----HHHHHH----------------------H-HHHHHh----ccCCCC-Ccc
Confidence                           12111100 00    000000                      0 000000    111100 010


Q ss_pred             CCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhcccceeeee
Q 016123          273 TEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVM  352 (394)
Q Consensus       273 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~~~~  352 (394)
                      .        ..++                   ++.      +  +   .....++.+|+|.+|.+.+..++.........
T Consensus       201 ~--------~~~~-------------------~~~------~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (402)
T TIGR00897       201 H--------MQTR-------------------EKF------S--E---LGKAATILFTNPNVLLGGMVRIINTIGLFGFA  242 (402)
T ss_pred             c--------ccCC-------------------cch------h--h---HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Confidence            0        0000                   000      0  0   01234678899999998887776655555566


Q ss_pred             eChHHHHHHhCCCc--chhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          353 NNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       353 ~n~~~i~~~~G~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      +..+.+.++.|++.  .....++..+++.+|++..|+++||++|
T Consensus       243 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~  286 (402)
T TIGR00897       243 VFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGW  286 (402)
T ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            78888888888863  4566778889999999999999999875

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.76  E-value=1e-16  Score=159.04  Aligned_cols=273  Identities=16%  Similarity=0.138  Sum_probs=191.2

Q ss_pred             HHHHHcC--CChhhhHH----HHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHH
Q 016123           39 ALKTLMN--LTQLELNN----LSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM  111 (394)
Q Consensus        39 ~l~~~~g--~s~~~~~~----~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l  111 (394)
                      .+.+++|  .+..+..+    +.++..+|.++ ++..|++.||+|||..+.++.++..++..++.++...    +++.++
T Consensus        44 t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~----~~~e~l  119 (485)
T KOG0569|consen   44 TLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA----PSFEML  119 (485)
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh----hhHHHH
Confidence            3456677  55544443    34555667765 7899999999999999999999888888777765332    457778


Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHh-hcCC-ChhHHHHHHHHHHHHHHHh
Q 016123          112 CVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSA-LFAD-DPAKFLFMLAIVPFVVCLG  188 (394)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~-~~~~-~~~~~~~~~~~~~~~v~~~  188 (394)
                      .+.|++.|+..|.........+.|.-|+ .||....+...+..+|..+...+... ++++ +.|.+++....+++++.++
T Consensus       120 i~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~  199 (485)
T KOG0569|consen  120 ILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA  199 (485)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH
Confidence            8899999999999888888899999996 59999999999999988887554443 5543 6799999999999999999


Q ss_pred             hhhcccccCCCCCc-cccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhcccccccccc
Q 016123          189 AIFFLRETTPASTV-DEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN  267 (394)
Q Consensus       189 ~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~  267 (394)
                      ..+++||+|++... ..+.+++.+..-                                               .++.. 
T Consensus       200 ~l~~~PESPk~Ll~~k~~~~~A~~sl~-----------------------------------------------~y~G~-  231 (485)
T KOG0569|consen  200 LLPFLPESPKYLLIKKGDEEEARKALK-----------------------------------------------FYRGK-  231 (485)
T ss_pred             HHhcCCCCcchHHHHcCCHHHHHHHHH-----------------------------------------------HHhCC-
Confidence            99999999998754 222233322100                                               02210 


Q ss_pred             cccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhch----hHHHHHHHHHh
Q 016123          268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTV----DFWILFVSFLC  343 (394)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~----~Fwll~~~~~~  343 (394)
                         ..++.+.|++                  .+|  .+.       ++ ....++.+++|+++++    ..++.....++
T Consensus       232 ---~~~~~~~e~~------------------~~e--~~~-------~~-~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~  280 (485)
T KOG0569|consen  232 ---EDVEAEIEEM------------------LRE--IEE-------EE-LEKKKQISLRQLLKNPTLRRPLLIGIVVSFA  280 (485)
T ss_pred             ---CcchhHHHHH------------------HHH--HHH-------hc-cccccCCcHHHHhcCcchhHHHHHHHHHHHH
Confidence               0000000000                  000  000       00 1112467889998875    34555555556


Q ss_pred             cccceee-eeeChHHHHHHhCCCc--chhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          344 GVGTGLA-VMNNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       344 ~~g~g~~-~~~n~~~i~~~~G~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      ....|.. +......|.++.|.++  +.......++.|.+..+++.++.||+||
T Consensus       281 qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gR  334 (485)
T KOG0569|consen  281 QQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGR  334 (485)
T ss_pred             HHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            6666665 6667788899999973  5677778999999999999999999998

>PRK10504 putative transporter; Provisional

Probab=99.76  E-value=1.4e-16  Score=160.55  Aligned_cols=145  Identities=12%  Similarity=0.041  Sum_probs=118.0

Q ss_pred             cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (394)
Q Consensus        30 ~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  108 (394)
                      .+.+....|.+.+++|+|..+.+++.+...++.. ..++.|++.||+|+|++++.+.++.+++.+...+.       ++.
T Consensus        26 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~   98 (471)
T PRK10504         26 TTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS-------GTL   98 (471)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-------CCH
Confidence            3455667888999999999999997777667765 48999999999999999999988888888765543       367


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHH
Q 016123          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIV  181 (394)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~  181 (394)
                      +.+++.+++.|++.+...+.....+.+++|+ +|+.+.|+......+|..+.+++...+.+...|+..+.+...
T Consensus        99 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~  172 (471)
T PRK10504         99 NELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIP  172 (471)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHH
Confidence            7788889999999988777777888999985 699999999999899999888888777766566665555443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.76  E-value=4.8e-17  Score=161.38  Aligned_cols=276  Identities=11%  Similarity=0.035  Sum_probs=180.0

Q ss_pred             Hhcccccc-hhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016123           26 ISGNNYTF-SNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKI  103 (394)
Q Consensus        26 ~~g~~y~~-~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~  103 (394)
                      ..|..+.. +...|.+++++|+|..+.+++.+...++... +++.|++.||+|+|+++.+|.++++++.+++..+...  
T Consensus        14 ~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~--   91 (410)
T TIGR00885        14 LWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEI--   91 (410)
T ss_pred             HHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhh--
Confidence            33443333 5778999999999999999988877778765 8999999999999999999999999998876543211  


Q ss_pred             CCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhH-HHHHHHHH
Q 016123          104 QPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAK-FLFMLAIV  181 (394)
Q Consensus       104 ~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~-~~~~~~~~  181 (394)
                        ++++.+.+.+++.|+|.|...++....+.++.|+ +|++.+++.++.+++|..+.+.+...++...... ....    
T Consensus        92 --~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~----  165 (410)
T TIGR00885        92 --MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV----  165 (410)
T ss_pred             --ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh----
Confidence              3678888889999999999888778888888884 6999999999999999999888877665321000 0000    


Q ss_pred             HHHHHHhhhhcccccCCCC-CccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhccc
Q 016123          182 PFVVCLGAIFFLRETTPAS-TVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVY  260 (394)
Q Consensus       182 ~~~v~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~  260 (394)
                                ..+..|... ...+.+..+||..+...+.+.+..                        .++..       
T Consensus       166 ----------~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~------------------------~~~~~-------  204 (410)
T TIGR00885       166 ----------LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAV------------------------ALLIM-------  204 (410)
T ss_pred             ----------hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHH-------
Confidence                      000000000 000112346776654333211100                        00000       


Q ss_pred             ccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHH
Q 016123          261 SFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVS  340 (394)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~  340 (394)
                        ++ +   .|+.+    +   .++                   +        +. +   ...+.++.+|+|.+|+..+.
T Consensus       205 --~~-~---~p~~~----~---~~~-------------------~--------~~-~---~~~~~~~~~~~~~~~~~~l~  240 (410)
T TIGR00885       205 --LT-K---MPALN----H---SDA-------------------K--------QI-S---FSASLSRLARIRHYREGVIA  240 (410)
T ss_pred             --Hh-c---CCCCC----c---ccc-------------------c--------cc-c---chhhHHHHHhChhHHHHHHH
Confidence              11 0   11000    0   000                   0        00 0   01134578899999998888


Q ss_pred             HHhcccceeeeeeChHHHHHHhCCC--c--chhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          341 FLCGVGTGLAVMNNMGQIGLALGYV--D--VSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       341 ~~~~~g~g~~~~~n~~~i~~~~G~~--~--~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      .++..+...+..++++++.++.+..  +  ++...+.+-....+||+++|++.||+++
T Consensus       241 ~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~  298 (410)
T TIGR00885       241 QFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAA  298 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            8887777767778888888876532  2  3446666667789999999999999864

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.75  E-value=1.4e-16  Score=161.62  Aligned_cols=178  Identities=20%  Similarity=0.212  Sum_probs=137.4

Q ss_pred             CCcHHHHHHHHHHHHHhcc-cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHH
Q 016123           11 AGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG   88 (394)
Q Consensus        11 ~~~w~~l~~~~~~~~~~g~-~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~   88 (394)
                      +++|..+....+..+..+. .+..+...|.+++++|+|..+.+++.+...++... +++.|++.||+|+|++++++.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   95 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF   95 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            3456655555555444433 34556677889999999999999977666777654 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123           89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus        89 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      +++.+.+.+.       ++++.+++.+++.|++.+..+......+.+++| ++|+++.++...+..+|..+.+.+...+.
T Consensus        96 ~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  168 (496)
T PRK03893         96 SVGTLACGFA-------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV  168 (496)
T ss_pred             HHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9888877654       367888889999999988877778888999998 46999999999999999999998888877


Q ss_pred             CCChhHHHHHHHHHHHHHHHhhhhcccc
Q 016123          168 ADDPAKFLFMLAIVPFVVCLGAIFFLRE  195 (394)
Q Consensus       168 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~  195 (394)
                      +...|+..+++++++.++.+......|+
T Consensus       169 ~~~~w~~~f~~~~~~~~~~~~~~~~~p~  196 (496)
T PRK03893        169 PVWGWRALFFIGILPIIFALWLRKNLPE  196 (496)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7666777766666555544433333333

>PRK10133 L-fucose transporter; Provisional

Probab=99.75  E-value=1.5e-16  Score=159.19  Aligned_cols=132  Identities=11%  Similarity=0.051  Sum_probs=109.2

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      ...+.+.|.+++++|+|..+.++..+...++... +++.|++.||+|+|+++.++.+++.++.+++.....    .++++
T Consensus        43 ~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~----a~~~~  118 (438)
T PRK10133         43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE----IMNYT  118 (438)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh----cCCHH
Confidence            4556788999999999999999987777777764 899999999999999999999999999877542211    14688


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcccC-CCchHHHHHhhhhhhHHHHHHHHHhh
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTDLCSAL  166 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gl~~~~~glg~~i~~~i~~~~  166 (394)
                      .+++.|++.|+|.+...++....+.++.|++ |+..+++.++.+++|..+.+.+...+
T Consensus       119 ~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        119 LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999998888888888887765 55689999999999988887765543

>PRK11043 putative transporter; Provisional

Probab=99.75  E-value=7.8e-17  Score=159.00  Aligned_cols=148  Identities=18%  Similarity=0.007  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHhcccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHH
Q 016123           14 WLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGY   92 (394)
Q Consensus        14 w~~l~~~~~~~~~~g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~   92 (394)
                      |..+..+++.+........+....|++++++|+|.++.+++.+...++... +++.|++.||+|+|+++..+.++..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   85 (401)
T PRK11043          6 GFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGS   85 (401)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHH
Confidence            344444444333222223333445667899999999999987777777764 8999999999999999999999888887


Q ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123           93 GAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      .+..+.       ++++.+++.+++.|++.+.........+.+++|+ +|+.+.+......++|+.+.+.+...+.+
T Consensus        86 ~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  155 (401)
T PRK11043         86 LGMLWV-------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN  155 (401)
T ss_pred             HHHHHh-------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            776543       3678888889999988876666666778899985 58888888887788888888777665543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.74  E-value=6.4e-17  Score=159.97  Aligned_cols=153  Identities=16%  Similarity=0.049  Sum_probs=113.5

Q ss_pred             cCCCCcHHHHHHHHHHHHHhc-ccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHH
Q 016123            8 TSSAGKWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGS   85 (394)
Q Consensus         8 ~~~~~~w~~l~~~~~~~~~~g-~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~   85 (394)
                      +.+++.|...+...+..+... ....+....|++++++|+|+.+.++..+...++... +++.|++.||+|+|+++.++.
T Consensus         6 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   85 (406)
T PRK15402          6 RLGRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGV   85 (406)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            334445555554444443322 223344456778999999999999976677777654 799999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHH
Q 016123           86 LEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCS  164 (394)
Q Consensus        86 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~  164 (394)
                      ++.+++.......       ++++.+++.+++.|++.+.........+.++||+ +|+.+.++......+|..+.+.+..
T Consensus        86 ~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~  158 (406)
T PRK15402         86 AFFILTCLAILLA-------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGA  158 (406)
T ss_pred             HHHHHHHHHHHHH-------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888888776553       3677788889999998887666777888899985 5888899888777777777776655


Q ss_pred             hhc
Q 016123          165 ALF  167 (394)
Q Consensus       165 ~~~  167 (394)
                      .+.
T Consensus       159 ~l~  161 (406)
T PRK15402        159 ALI  161 (406)
T ss_pred             HHH
Confidence            544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.74  E-value=1.4e-16  Score=156.70  Aligned_cols=128  Identities=15%  Similarity=0.056  Sum_probs=106.2

Q ss_pred             cchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHH
Q 016123           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (394)
Q Consensus        32 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  110 (394)
                      .+....|.+++++|.|..+.++..+...++... .++.|++.||+|+|+.++++.++..++..+....       ++.+.
T Consensus        21 ~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~-------~~~~~   93 (392)
T PRK10473         21 MYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA-------ETSSL   93 (392)
T ss_pred             HHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-------CcHHH
Confidence            444678899999999999999977777777764 8999999999999999999999999888876653       35777


Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhh
Q 016123          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSAL  166 (394)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~  166 (394)
                      +++.+++.|++.+..+......+.+++| ++|+++.|+......+|..+.+.+...+
T Consensus        94 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l  150 (392)
T PRK10473         94 FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI  150 (392)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788999999988877778888999998 5799999999988888877776665444

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.74  E-value=5.7e-17  Score=156.58  Aligned_cols=132  Identities=11%  Similarity=0.030  Sum_probs=107.5

Q ss_pred             hcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 016123           35 NYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (394)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~  113 (394)
                      ...|.+.++++.+..+.+++.+...++.. .+++.|++.||+|||++++.+.++..++..+..+....  .+.+++.+++
T Consensus        20 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   97 (365)
T TIGR00900        20 VALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL--GGLNIWQVYV   97 (365)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc--CCCcHHHHHH
Confidence            44566777899999999998777777775 48999999999999999999999888877766654211  1126788888


Q ss_pred             HHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          114 FLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      .+++.|++.+...++....+.+++| ++|+++.|+...+..+|..+.+.+...+.+
T Consensus        98 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  153 (365)
T TIGR00900        98 LAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA  153 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999887788889999998 479999999999999999888877666543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.73  E-value=1.7e-16  Score=158.58  Aligned_cols=145  Identities=13%  Similarity=-0.011  Sum_probs=106.1

Q ss_pred             CcHHHHHHHHHHHHHhcc-cccchhcHHHHHHHcCCChhhhHH-HHHHHHhhh------hhhhhhHhhhhccCchHHHHH
Q 016123           12 GKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNN-LSVVKDIGK------AFGLLAGLASDRIPAPIILLI   83 (394)
Q Consensus        12 ~~w~~l~~~~~~~~~~g~-~y~~~~~~~~l~~~~g~s~~~~~~-~~~~~~~~~------~~~~~~G~l~Dr~G~r~~~~~   83 (394)
                      .||+.....++..+.... ...++...|.++++++.+..+.+. ..+....+.      +.+++.|++.||+|||++++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~   91 (434)
T PRK15075         12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV   91 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence            455554444444444433 456788899999999998887654 322222221      236789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCchHH--------HHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhh
Q 016123           84 GSLEGLVGYGAQWLVVSRKIQPLSYW--------QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGL  154 (394)
Q Consensus        84 g~~~~~~g~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~gl  154 (394)
                      +.+++.++..++.++       ++++        .+++.|++.|++.+.........+.+|+| ++||+++++...+..+
T Consensus        92 ~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~  164 (434)
T PRK15075         92 TLSIMASGTLLIAFV-------PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQV  164 (434)
T ss_pred             HHHHHHHHHHHHHhC-------CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHH
Confidence            999999998887654       2343        35678999999998877777788999998 5799999999888777


Q ss_pred             hHHHHHHHH
Q 016123          155 STAIFTDLC  163 (394)
Q Consensus       155 g~~i~~~i~  163 (394)
                      |..+.+.+.
T Consensus       165 g~~~g~~~g  173 (434)
T PRK15075        165 AVVFAALLG  173 (434)
T ss_pred             HHHHHHHHH
Confidence            766655443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.73  E-value=2.2e-16  Score=154.96  Aligned_cols=130  Identities=18%  Similarity=0.139  Sum_probs=107.8

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      .....+.|++.+++|+|..+++++.+...++..+ +++.|++.||+|+|+++..+.++.+++.....+.       ++++
T Consensus        23 ~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~-------~~~~   95 (381)
T PRK03633         23 AVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM-------VGFW   95 (381)
T ss_pred             hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccHH
Confidence            3455678999999999999999988877888765 8999999999999999999999999988876654       4688


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      .+.+.|++.|++.+...+.....+.++.| ++||+++|+...+..+|..+.+.+...+.
T Consensus        96 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633         96 SWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            88889999999988766555555666665 68999999999999999988887766554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.73  E-value=4.5e-17  Score=156.67  Aligned_cols=129  Identities=22%  Similarity=0.230  Sum_probs=107.8

Q ss_pred             chhcHH-HHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHH
Q 016123           33 FSNYSD-ALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (394)
Q Consensus        33 ~~~~~~-~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  110 (394)
                      +....| .+.+++|+|..+++++.+...++.. .+++.|++.||+|+|+++.++.++.+++.....++       ++.+.
T Consensus        15 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-------~~~~~   87 (352)
T PF07690_consen   15 ISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-------SNFWL   87 (352)
T ss_dssp             HHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-------CCHHH
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-------hhHHH
Confidence            445556 7889999999999998777777765 58999999999999999999999999985554433       25667


Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      +++.+++.|++.+...+.....+.+++|+ +|+++.|+...+.++|..+.+.+...+.+
T Consensus        88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  146 (352)
T PF07690_consen   88 LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS  146 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             Hhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh
Confidence            77899999999988888888999999996 89999999999999999888887776653

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.72  E-value=4.1e-16  Score=153.68  Aligned_cols=130  Identities=12%  Similarity=-0.025  Sum_probs=100.8

Q ss_pred             HHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHH-hccCCchHHHHHHHHH
Q 016123           39 ALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVS-RKIQPLSYWQMCVFLC  116 (394)
Q Consensus        39 ~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~~~  116 (394)
                      .+++++|+|..+.+++.+...++.. .+++.|++.||+|||+++.++.++.+++......... +.....+++.+++.|+
T Consensus        41 ~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  120 (399)
T PRK05122         41 YVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRL  120 (399)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHH
Confidence            4688999999999998777777775 4899999999999999999999988877665544311 1000013556778899


Q ss_pred             HHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          117 MGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       117 l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      +.|++.+...........+++| ++|++++++...+..+|..+.+++...+.+
T Consensus       121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  173 (399)
T PRK05122        121 LLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH  173 (399)
T ss_pred             HHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999877777777888887 679999999888888887777777655543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.72  E-value=6.8e-17  Score=161.41  Aligned_cols=253  Identities=11%  Similarity=0.050  Sum_probs=181.5

Q ss_pred             HHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHh
Q 016123           41 KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG  119 (394)
Q Consensus        41 ~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G  119 (394)
                      +.+++||+.|-+++.+....|.+. .+++|+++||+|.|+++..+.++.+++.++.-++..     .+++.+++.|+++|
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-----~~~~~~~~~R~lqG  139 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-----IGFYLLLVLRFLQG  139 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-----hcchhhHHHHHHhH
Confidence            457999999999988888889876 789999999999999999999999999988776643     24556677899999


Q ss_pred             hhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhhcccccCC
Q 016123          120 NSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTP  198 (394)
Q Consensus       120 ~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~  198 (394)
                      ++.|..+++.....++|+| ++|++..++..++..+|..+.-|+...+.+.                             
T Consensus       140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-----------------------------  190 (466)
T KOG2532|consen  140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES-----------------------------  190 (466)
T ss_pred             HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-----------------------------
Confidence            9999999888889999998 5899999999999999999998888877764                             


Q ss_pred             CCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhcccccccccccccCCCCCCch
Q 016123          199 ASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVE  278 (394)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~  278 (394)
                              ..||+..|-..+.+.++.+++=                        ..   .    .+ ++|++   +    
T Consensus       191 --------~~GW~sifY~~g~~g~i~~~~w------------------------~~---~----~~-d~P~~---h----  223 (466)
T KOG2532|consen  191 --------SLGWPSIFYVFGIVGLIWFILW------------------------FL---F----YS-DSPSK---H----  223 (466)
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHH------------------------HH---H----hc-CCccc---C----
Confidence                    2445544322222111111000                        00   0    11 11111   0    


Q ss_pred             hhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhcccceeeeeeChHHH
Q 016123          279 EQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQI  358 (394)
Q Consensus       279 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i  358 (394)
                            |..+++|-+     .    .+.+  ..  ++.....++..++++++++.+|.++++.++..-....++..++.+
T Consensus       224 ------~~is~~El~-----~----I~~~--k~--~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY  284 (466)
T KOG2532|consen  224 ------PNISEKELK-----Y----IEKG--KS--EAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTY  284 (466)
T ss_pred             ------CCCCHHHHH-----H----HHhc--cc--ccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence                  000000000     0    0000  00  000011135789999999999999999999988888888999999


Q ss_pred             HHH-hCCC--cchhhHHHHHHHHHHhhhhhccccchhc
Q 016123          359 GLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFI  393 (394)
Q Consensus       359 ~~~-~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~  393 (394)
                      .++ ++++  +.+.+.++=-+...+-++++|.++||+.
T Consensus       285 ~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~  322 (466)
T KOG2532|consen  285 LKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLT  322 (466)
T ss_pred             HHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            987 4665  5778888999999999999999999974

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.72  E-value=1.5e-16  Score=155.29  Aligned_cols=129  Identities=11%  Similarity=0.031  Sum_probs=108.1

Q ss_pred             cchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHH
Q 016123           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (394)
Q Consensus        32 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  110 (394)
                      .+....|.+.+++|+|..+.+++.+...++... .++.|++.||+|||+++..+.++.+++...+...       ++++.
T Consensus         9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-------~~~~~   81 (377)
T PRK11102          9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-------QTIDQ   81 (377)
T ss_pred             HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-------ccHHH
Confidence            444567888999999999999987777777754 8999999999999999999999999888887654       35777


Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      +++.+++.|++.+.........+.+++|+ +|++++++...+..+|..+.+.+...+.
T Consensus        82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  139 (377)
T PRK11102         82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL  139 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78889999998887777777889999985 6999999999999998888877765554

>PRK09952 shikimate transporter; Provisional

Probab=99.72  E-value=2.9e-16  Score=157.12  Aligned_cols=147  Identities=10%  Similarity=0.047  Sum_probs=105.5

Q ss_pred             CCcHHHHHHHHHHHHHhcc-cccchhcHHH-HHHHc--CCChhhhHHHHH-----HHHhhhhh-hhhhHhhhhccCchHH
Q 016123           11 AGKWLGFVTAVWVQAISGN-NYTFSNYSDA-LKTLM--NLTQLELNNLSV-----VKDIGKAF-GLLAGLASDRIPAPII   80 (394)
Q Consensus        11 ~~~w~~l~~~~~~~~~~g~-~y~~~~~~~~-l~~~~--g~s~~~~~~~~~-----~~~~~~~~-~~~~G~l~Dr~G~r~~   80 (394)
                      .++|..+..+++...+.+. ...++...+. +.+++  +.++. .+++.+     ...++..+ +++.|++.||+|||++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~   96 (438)
T PRK09952         18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence            3556666666555544433 3445555554 45555  67766 344322     22233333 6788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCchHH--------HHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhh
Q 016123           81 LLIGSLEGLVGYGAQWLVVSRKIQPLSYW--------QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGY  151 (394)
Q Consensus        81 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~--------~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~  151 (394)
                      +.++.++++++.++.+++       ++++        .+.+.|++.|++.|..++.....+.||+| |+||+..+....+
T Consensus        97 l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g  169 (438)
T PRK09952         97 LMLTVWMMGIATALIGLL-------PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVG  169 (438)
T ss_pred             HHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence            999999999998887764       2333        46678999999999888888889999998 5799999999999


Q ss_pred             hhhhHHHHHHHHHh
Q 016123          152 VGLSTAIFTDLCSA  165 (394)
Q Consensus       152 ~glg~~i~~~i~~~  165 (394)
                      ..+|..+...+...
T Consensus       170 ~~~G~~l~~~~~~~  183 (438)
T PRK09952        170 YGVGLLLSTGLVSL  183 (438)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988777665543

>PRK12382 putative transporter; Provisional

Probab=99.71  E-value=9.5e-16  Score=150.81  Aligned_cols=129  Identities=15%  Similarity=-0.023  Sum_probs=98.9

Q ss_pred             HHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHH-hccCCchHHHHHHHHH
Q 016123           39 ALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVS-RKIQPLSYWQMCVFLC  116 (394)
Q Consensus        39 ~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~-~~~~~~~~~~l~~~~~  116 (394)
                      .+++++|+|..+++++.+...++.. .+++.|++.||+|||++++.+.+...++...+..... ......+++.+++.|+
T Consensus        41 ~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  120 (392)
T PRK12382         41 FVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRL  120 (392)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence            4688999999999997777777775 4899999999999999999998877665443322110 0000135677888999


Q ss_pred             HHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          117 MGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       117 l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      +.|++.+...++....+.+++| |+|++++|+...+...|..+.+++...+.
T Consensus       121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~  172 (392)
T PRK12382        121 ILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH  172 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998777777778889997 57999999998888888888777765543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.67  E-value=3.2e-15  Score=147.18  Aligned_cols=129  Identities=12%  Similarity=0.040  Sum_probs=103.8

Q ss_pred             cchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHH
Q 016123           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (394)
Q Consensus        32 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  110 (394)
                      .+....|++.+++|+|..+.+++.+...++..+ .++.|++.||+|||+++.++.++..++.+.....       ++++.
T Consensus        26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-------~~~~~   98 (394)
T PRK11652         26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-------HSLTV   98 (394)
T ss_pred             HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-------ccHHH
Confidence            344456888999999999999987777777764 8999999999999999999999888888776543       36778


Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      +++.+++.|++.+...........++++ ++|+.+.++...+..++..+.+.+...+.
T Consensus        99 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  156 (394)
T PRK11652         99 LIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT  156 (394)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888999999887765556666778887 57999999988888888777776665543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.65  E-value=2.9e-16  Score=163.54  Aligned_cols=134  Identities=15%  Similarity=0.056  Sum_probs=108.9

Q ss_pred             hhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHH--h---------
Q 016123           34 SNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVS--R---------  101 (394)
Q Consensus        34 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~--~---------  101 (394)
                      +...++++++|+++.++.+++.+...++..+ .++.|++.||+|||+.+.+|.+++++|.+++++..-  +         
T Consensus        53 ~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~  132 (633)
T TIGR00805        53 NSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVS  132 (633)
T ss_pred             HhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccc
Confidence            4556889999999999999988888888865 899999999999999999999999999998876420  0         


Q ss_pred             ---c-----------c-----------------C--CchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHH
Q 016123          102 ---K-----------I-----------------Q--PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGI  147 (394)
Q Consensus       102 ---~-----------~-----------------~--~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl  147 (394)
                         .           .                 .  +..+..+++.|++.|+|.+..++....++.+|+| ++|++++|+
T Consensus       133 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i  212 (633)
T TIGR00805       133 STGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGI  212 (633)
T ss_pred             ccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHH
Confidence               0           0                 0  0023455678999999999988888999999998 579999999


Q ss_pred             HHhhhhhhHHHHHHHHHhhc
Q 016123          148 LKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       148 ~~~~~glg~~i~~~i~~~~~  167 (394)
                      ..++..+|..+...+...+.
T Consensus       213 ~~~~~~iG~~lG~llgg~l~  232 (633)
T TIGR00805       213 LESIAVFGPAFGYLLGSFCL  232 (633)
T ss_pred             HHHHHHhhhHHHHHHHHHHH
Confidence            99999898887776665544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.65  E-value=5.3e-15  Score=143.51  Aligned_cols=129  Identities=11%  Similarity=-0.088  Sum_probs=94.8

Q ss_pred             hhcHHHHHHHcCCChhhhHHHHHHHHhhhhhhhhhHhhhhcc-----CchHHH-HHHHHHHHHHHHHHHHHHHhccCCch
Q 016123           34 SNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRI-----PAPIIL-LIGSLEGLVGYGAQWLVVSRKIQPLS  107 (394)
Q Consensus        34 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----G~r~~~-~~g~~~~~~g~~~~~~~~~~~~~~~~  107 (394)
                      +...|.+.+++|+|.+|+++.+.... .....++.|++.||+     ||||.+ +.+.++.++.....++...    ..+
T Consensus         8 ~~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~----~~~   82 (356)
T TIGR00901         8 GNTLPYWLRSKNVSLKTIGFFSLVGL-PYSLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP----STD   82 (356)
T ss_pred             HhHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc----chh
Confidence            34567788999999999999765432 223489999999998     899974 5666666666555543211    134


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      .+.++...++.+.+.+...++....+.+++| |+|+++.|+..++..+|..+.+.+...+.
T Consensus        83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~  143 (356)
T TIGR00901        83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA  143 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5556666666676767666777788999997 57999999999999999888887765554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.64  E-value=4e-15  Score=145.01  Aligned_cols=133  Identities=12%  Similarity=-0.053  Sum_probs=93.1

Q ss_pred             ccchhcHHHHHHHcC--CChhhhHHHHHHHH-----hhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 016123           31 YTFSNYSDALKTLMN--LTQLELNNLSVVKD-----IGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRK  102 (394)
Q Consensus        31 y~~~~~~~~l~~~~g--~s~~~~~~~~~~~~-----~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~  102 (394)
                      +.++...+.+.+++.  .++.+.+...+...     ++.. .+++.|++.||+|||+++.++.++..++..+..+... .
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-~   88 (394)
T TIGR00883        10 YLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPS-Y   88 (394)
T ss_pred             HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCC-h
Confidence            445556666666654  44555555332221     1212 3689999999999999999999999998887765411 0


Q ss_pred             cCC--chHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHH
Q 016123          103 IQP--LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCS  164 (394)
Q Consensus       103 ~~~--~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~  164 (394)
                      ...  ...+.+++.|++.|++.+.........+.+++| ++||++.++...+..+|..+.+.+..
T Consensus        89 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~  153 (394)
T TIGR00883        89 ATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVL  153 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            000  001245668999999988877778889999997 57999999999998888887776543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.64  E-value=1.1e-14  Score=141.78  Aligned_cols=123  Identities=15%  Similarity=0.042  Sum_probs=86.3

Q ss_pred             HHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHH-HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 016123           39 ALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLI-GSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLC  116 (394)
Q Consensus        39 ~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~-g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~  116 (394)
                      .+++++|+|..+.+++.+...+... .+++.|++.||+|+||.+++ +.+...++..+.+.+       ++++.+++.++
T Consensus        23 ~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~   95 (375)
T TIGR00899        23 FLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN-------RNYFLLLVLGV   95 (375)
T ss_pred             HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc-------chHHHHHHHHH
Confidence            4688999999999997666666554 58999999999999987665 444445555555432       46777777777


Q ss_pred             HHhhhhhhhhhhHHHHHHHhccc-CCCch--HHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          117 MGGNSTTWMNTAVLVTCIRNFRR-NRGPV--SGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       117 l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a--~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      +.|.+.+...+.......++.|+ +|+.+  .++...+.++|..+.+++...+.+
T Consensus        96 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~  150 (375)
T TIGR00899        96 LLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL  150 (375)
T ss_pred             HHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH
Confidence            77655555444445556677764 45544  577777788888888877666543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10054 putative transporter; Provisional

Probab=99.64  E-value=6.2e-15  Score=145.56  Aligned_cols=127  Identities=13%  Similarity=0.059  Sum_probs=97.3

Q ss_pred             hhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 016123           34 SNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (394)
Q Consensus        34 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~  112 (394)
                      +.+.+.+++++|+|..+++++.+...+... .+++.|++.||+|+|++++++.+...++++.+.+.       ++++.++
T Consensus        28 ~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  100 (395)
T PRK10054         28 PFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV-------NNVTLVV  100 (395)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-------hHHHHHH
Confidence            344556788999999999997666666554 58999999999999999999999888888776653       3566666


Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          113 VFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      +.+++.|.+.+...........+.+| ++|+++.|+......+|.++.+++...+.
T Consensus       101 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054        101 LFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666555444445556667776 46999999999999999888887766543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.63  E-value=1.8e-14  Score=143.09  Aligned_cols=130  Identities=19%  Similarity=0.091  Sum_probs=104.6

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      ..+..-.|.+.+++|.+..+.++..+...++.. .+++.|++.||+|||++++.+.++.+++......+       ++++
T Consensus        33 ~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-------~~~~  105 (413)
T PRK15403         33 DLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-------TSMT  105 (413)
T ss_pred             HhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-------CCHH
Confidence            344445577899999999999996666666665 48999999999999999999999988888777653       4688


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      .+++.|++.|++.+.........+.++||+ +|++++++...+..+|..+.+.+...+.
T Consensus       106 ~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~  164 (413)
T PRK15403        106 QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM  164 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888899999998876555566778899985 6899999999999999888766654443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.63  E-value=8.1e-15  Score=145.50  Aligned_cols=133  Identities=17%  Similarity=0.056  Sum_probs=104.2

Q ss_pred             hhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 016123           34 SNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (394)
Q Consensus        34 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~  112 (394)
                      ....|.+.++++.+..+.+++.+...++... +++.|++.||+|+|+++.++.++.++++.........  ..++++.++
T Consensus        37 ~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~  114 (417)
T PRK10489         37 GVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL--PEPSLLAIY  114 (417)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc--CCCcHHHHH
Confidence            4456777788888999999987777777764 8999999999999999999888888777665432110  113577777


Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          113 VFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      +.+++.|++.+....+....+.+++|+ +|+++.++...+.++|..+.+.+...+.+
T Consensus       115 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~  171 (417)
T PRK10489        115 LLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA  171 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence            788898988887666777788899985 69999999998889998888877766543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.62  E-value=2.8e-14  Score=141.13  Aligned_cols=147  Identities=17%  Similarity=0.200  Sum_probs=115.2

Q ss_pred             CcHHHHHHHHHHHHHhcccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHH
Q 016123           12 GKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLV   90 (394)
Q Consensus        12 ~~w~~l~~~~~~~~~~g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~   90 (394)
                      .+|..+...++.....  ...+++..+.+++++|+|..+++++.....+... .+++.|++.||+|+|+++.++.++..+
T Consensus        11 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~   88 (400)
T PRK11646         11 GKYFLLIDNMLVVLGF--FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAA   88 (400)
T ss_pred             cHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHH
Confidence            3455555555544332  2345556666889999999999997666566654 589999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123           91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus        91 g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      +.+.+...       +++|.+++.+++.|++.+...++..+.+.+++| ++||++.|+......+|..+.+.+...+.
T Consensus        89 ~~~~~~~~-------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~  159 (400)
T PRK11646         89 GFATMAIA-------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL  159 (400)
T ss_pred             HHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877653       367888888999999887766666778889997 57999999999999999988888776654

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.61  E-value=5.1e-14  Score=138.88  Aligned_cols=129  Identities=13%  Similarity=-0.010  Sum_probs=98.3

Q ss_pred             cchhcHHHHHHHcCCChhhh-----HHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016123           32 TFSNYSDALKTLMNLTQLEL-----NNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQP  105 (394)
Q Consensus        32 ~~~~~~~~l~~~~g~s~~~~-----~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~  105 (394)
                      .+..+.|.+.+++|++..+.     +++.+...++.. .+++.|++.||+|+|+++..+.++.+++..++...       
T Consensus        32 ~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------  104 (408)
T PRK09874         32 LVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA-------  104 (408)
T ss_pred             HhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH-------
Confidence            44567788888999987653     555555555554 48999999999999999999999888887776543       


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      ++++.+++.+++.|++.+. +......+.+++| ++||++.|+...+..+|..+.+.+...+.+
T Consensus       105 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  167 (408)
T PRK09874        105 QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD  167 (408)
T ss_pred             hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677888888888887654 3445566778887 579999999999888888888777665543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.60  E-value=1.8e-14  Score=144.62  Aligned_cols=248  Identities=17%  Similarity=0.143  Sum_probs=179.7

Q ss_pred             HHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 016123           40 LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (394)
Q Consensus        40 l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (394)
                      ++++.+....+.+.+.+.+.++.++ .+++|.+.||++..+.+....+..++-.++....       ++++.+++.|++.
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-------~s~~~~ialr~ll  144 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-------HSFPGLIALRFLL  144 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHH
Confidence            4578888899999988888888865 7999999999998888877777666544333332       4788999999999


Q ss_pred             hhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCC------ChhH-HHHHHHHHHHHHHHhhh
Q 016123          119 GNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD------DPAK-FLFMLAIVPFVVCLGAI  190 (394)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~------~~~~-~~~~~~~~~~~v~~~~~  190 (394)
                      |+..+..+++...++.+||.+ +||+.+|+..+..++|+.+.+.+...+++.      ..|+ .++.-+++..+.++++.
T Consensus       145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f  224 (495)
T KOG2533|consen  145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF  224 (495)
T ss_pred             HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence            999999988888999999985 799999999999999999999998886531      1222 23333333444444444


Q ss_pred             hcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhccccccccccccc
Q 016123          191 FFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNR  270 (394)
Q Consensus       191 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~  270 (394)
                      +++|+.|++.                                                                      
T Consensus       225 ~~lp~~P~~~----------------------------------------------------------------------  234 (495)
T KOG2533|consen  225 FFLPDNPSKA----------------------------------------------------------------------  234 (495)
T ss_pred             EEecCChhhc----------------------------------------------------------------------
Confidence            4444444321                                                                      


Q ss_pred             CCCCCCch-----hhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhcc
Q 016123          271 KRTEPDVE-----EQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGV  345 (394)
Q Consensus       271 ~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~  345 (394)
                       .-..|.|     ++.+.++   +               +.   .   ++   ..+...++|++|+|..|.+.++.+|..
T Consensus       235 -~fl~~~ek~~~~~~~~~~~---~---------------~~---~---~~---~~~~~~~~~a~~dp~vw~~~l~~~~~~  286 (495)
T KOG2533|consen  235 -WFLTDEEKELVVERLRESP---S---------------GG---I---EN---KFKWKGFKEALKDPGVWPFSLCYFFLK  286 (495)
T ss_pred             -cccchHHHHHHHHHHHhcc---C---------------CC---c---cc---ccCHHHHHHHHhchhHHHHHHHHHHHh
Confidence             0000000     0000000   0               00   0   00   012467899999999999999999999


Q ss_pred             cceeeeeeChHHHHHH-hCCC--cchhhHHHHHHHHHHhhhhhccccchh
Q 016123          346 GTGLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYF  392 (394)
Q Consensus       346 g~g~~~~~n~~~i~~~-~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~  392 (394)
                      .....+.+.++.+.++ .|++  ++..+...+.+.+.+|-++.|+++||+
T Consensus       287 lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~  336 (495)
T KOG2533|consen  287 LVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL  336 (495)
T ss_pred             hccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence            9999999999999999 3466  467788889999999999999999994

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.60  E-value=5.8e-14  Score=143.35  Aligned_cols=261  Identities=17%  Similarity=0.110  Sum_probs=183.0

Q ss_pred             hhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhh
Q 016123           49 LELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNT  127 (394)
Q Consensus        49 ~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~  127 (394)
                      .+.+++.+...++... +++.|++.|++|||++++++.+++.+|.++.+++       .++++++++|++.|+|.|....
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-------~~~~~l~~GR~l~G~g~G~~~~  161 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-------PSWYQLIVGRILTGLGVGGASV  161 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHhccchhhhhh
Confidence            3457888888888865 8999999999999999999999999999999876       4788999999999999999888


Q ss_pred             hHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCC--hhHHHHHHHHHHHHHHHhhhhcccccCCCCCccc
Q 016123          128 AVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADD--PAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDE  204 (394)
Q Consensus       128 ~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~  204 (394)
                      ....++++.-|+ .||...++.+....+|..+. .+.....+..  .||.++.++.+++++..++.+++|+.|++....+
T Consensus       162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g  240 (513)
T KOG0254|consen  162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKG  240 (513)
T ss_pred             cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcC
Confidence            888889999996 69999999999988665554 5556655543  7999999999999999999999999999876422


Q ss_pred             cccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhcccccccccccccCCCCCCchhhhccc
Q 016123          205 EKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVE  284 (394)
Q Consensus       205 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (394)
                      +.++..+...                                               .++..+   . .+.+.|-++...
T Consensus       241 ~~~~a~~~l~-----------------------------------------------~l~g~~---~-~~~~~~~~~~~~  269 (513)
T KOG0254|consen  241 RLEEAKRSLK-----------------------------------------------RLRGLS---P-EDVEVELELLKI  269 (513)
T ss_pred             ChHHHHHHHH-----------------------------------------------HHhCCC---C-cchHHHHHHHHH
Confidence            2222211100                                               011100   0 000000000000


Q ss_pred             CCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHH----HhhchhHHHHHHHHHhcccceeeeeeChHHHHH
Q 016123          285 PLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFE----AMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGL  360 (394)
Q Consensus       285 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~----~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~  360 (394)
                      ..            .    .+..      .  .  ..+..+++    ..+++.++-+.+..+-.......+++..+++.+
T Consensus       270 ~~------------~----~~~~------~--~--~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~  323 (513)
T KOG0254|consen  270 KL------------L----VEAE------V--A--EGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK  323 (513)
T ss_pred             HH------------H----Hhhh------c--c--cccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHH
Confidence            00            0    0000      0  0  00111222    334456666666666555445678999999999


Q ss_pred             HhCCCcc-hhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          361 ALGYVDV-SIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       361 ~~G~~~~-a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      +.|..+. .....+.++.|.++-++..++.||+||
T Consensus       324 ~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gR  358 (513)
T KOG0254|consen  324 SAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGR  358 (513)
T ss_pred             hcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9998754 667777889999999999999999998

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.59  E-value=4.9e-14  Score=138.57  Aligned_cols=163  Identities=15%  Similarity=0.029  Sum_probs=138.0

Q ss_pred             ccccchhcHHHHHHHcCCChhh-hHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 016123           29 NNYTFSNYSDALKTLMNLTQLE-LNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPL  106 (394)
Q Consensus        29 ~~y~~~~~~~~l~~~~g~s~~~-~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~  106 (394)
                      ..-..++..|++.+++|+|.+| .+.+......+... .+++|++.||+|+|+++.++.+..++..++..++       +
T Consensus        41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa-------~  113 (511)
T TIGR00806        41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG-------T  113 (511)
T ss_pred             hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-------H
Confidence            4456778889999999999999 88877777777764 8999999999999999999999999998888765       3


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChh--HHHHHHHHHHH
Q 016123          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPA--KFLFMLAIVPF  183 (394)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~--~~~~~~~~~~~  183 (394)
                      +++.+.+.|++.|++.|..+ +...++.+|||+ +|++++|+..++..+|.++.+++...+..-++.  ..+..+.....
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~  192 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFM  192 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            68888899999999999988 899999999995 799999999999999999999999884433332  34566677778


Q ss_pred             HHHHhhhhcccccCCC
Q 016123          184 VVCLGAIFFLRETTPA  199 (394)
Q Consensus       184 ~v~~~~~~~~~~~p~~  199 (394)
                      .++++..+++|.++++
T Consensus       193 ~~a~~~a~~LP~~~~s  208 (511)
T TIGR00806       193 TFSVFLALFLKRPKRS  208 (511)
T ss_pred             HHHHHHHHhCCCCchh
Confidence            8888889999966653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.59  E-value=8.5e-14  Score=137.34  Aligned_cols=124  Identities=14%  Similarity=0.039  Sum_probs=101.2

Q ss_pred             hcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 016123           35 NYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (394)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~  113 (394)
                      ...+++.+++|.+..+.+++.+...+... ++|+.|++.||+|||++++++.++.+++.+.+.+.       .+.   .+
T Consensus        24 ~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-------~~~---~~   93 (393)
T PRK11195         24 FAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-------IHP---LL   93 (393)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-------HHH---HH
Confidence            34456678999999999998777777775 58999999999999999999999998877765442       122   45


Q ss_pred             HHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          114 FLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      .|++.|++.+..+++....+.+++| ++|+++.|+......+|..+.+.+...+.+
T Consensus        94 ~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~  149 (393)
T PRK11195         94 AYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD  149 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999988888999999998 579999999998888888888777666543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.59  E-value=7.6e-14  Score=133.57  Aligned_cols=132  Identities=23%  Similarity=0.183  Sum_probs=113.6

Q ss_pred             cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (394)
Q Consensus        30 ~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  108 (394)
                      .+.++.+.|.+.+++|.+..+.+++.+...++... .++.|++.||+|||+.+.++.++..++.......       +++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~   87 (352)
T cd06174          15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-------SSL   87 (352)
T ss_pred             hhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-------ccH
Confidence            34566777888899999999999987777777754 8999999999999999999999999998887654       367


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      +.+++.+++.|++.+...........+++|+ +|+++.++......+|..+.+.+...+.+
T Consensus        88 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  148 (352)
T cd06174          88 WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE  148 (352)
T ss_pred             HHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888899999999998888888899999996 79999999999999999998888776654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.58  E-value=9.4e-14  Score=141.01  Aligned_cols=131  Identities=17%  Similarity=0.017  Sum_probs=98.3

Q ss_pred             chhcHHHHHHHcCCChhhhHHHHHHHHhhhhhhhhhHhhhhcc-----CchHH-HHHHHHHHHHHHHHHHHHHHhccCCc
Q 016123           33 FSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRI-----PAPII-LLIGSLEGLVGYGAQWLVVSRKIQPL  106 (394)
Q Consensus        33 ~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----G~r~~-~~~g~~~~~~g~~~~~~~~~~~~~~~  106 (394)
                      .+...|.+.++.|.|.++++.++.... ...+.++.|++.||+     |||+. ++++.+..+++...+++..    +..
T Consensus        31 ~~~~l~~~l~~~g~~~~~ig~~~~~~~-~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~----~~~  105 (491)
T PRK11010         31 TSGTLQAWMTVENIDLKTIGFFSLVGQ-AYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE----PGT  105 (491)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC----Ccc
Confidence            344567777788999999998643332 234689999999999     99986 6577777767766655431    113


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      +++.+.+.+++.+++.+....+......+|+| ++||++.++...+..+|..+.+.+...+.+
T Consensus       106 ~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~  168 (491)
T PRK11010        106 QLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLAD  168 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57777777888888887777777888999998 679999999999999998888776655543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.57  E-value=1.1e-13  Score=154.25  Aligned_cols=129  Identities=14%  Similarity=0.048  Sum_probs=98.3

Q ss_pred             hcHHHHHHHcCCChhh--hHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHH
Q 016123           35 NYSDALKTLMNLTQLE--LNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM  111 (394)
Q Consensus        35 ~~~~~l~~~~g~s~~~--~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l  111 (394)
                      ...+.+.++++.+.+.  .+++.+...++.. +++++|++.||+|||++++++.++..++.++..++...    .+++.+
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~----~~~~~l  106 (1146)
T PRK08633         31 LIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL----GWFWLA  106 (1146)
T ss_pred             HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH----ccHHHH
Confidence            3445566677766544  4555666666665 48999999999999999999887766655554433211    357888


Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          112 CVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      ++.+++.|++.++..++...++.+++| ++|++++|+..++..+|..+.+.+...+.
T Consensus       107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~  163 (1146)
T PRK08633        107 FAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF  163 (1146)
T ss_pred             HHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999888888889999998 57999999999999999888877766554

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.57  E-value=1.2e-13  Score=135.67  Aligned_cols=238  Identities=11%  Similarity=0.022  Sum_probs=151.2

Q ss_pred             hcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCch----HHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           35 NYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAP----IILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r----~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      .+.|.+.+++|.|..+++++.+...+... .+++.|++.||+|+|    +.+.++.....+.   +..  .    ++++|
T Consensus        25 p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~---~~~--~----~~~~~   95 (382)
T PRK11128         25 PFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVA---FWF--G----AHSFW   95 (382)
T ss_pred             hhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHH---HHH--h----cccHH
Confidence            34566778899999999997777777765 489999999999984    3333332222211   111  1    14688


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGA  189 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~  189 (394)
                      .+++.+++.|++.+........+ ..+++++|+++.|.......+|.++.+++...+.+                     
T Consensus        96 ~l~i~~~l~g~~~~~~~~~~~a~-~~~~~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~---------------------  153 (382)
T PRK11128         96 LLFVAIGLFNLFFSPLVPLTDAL-ANTWQKQIGLDYGKVRLWGSIAFVIGSALTGKLVS---------------------  153 (382)
T ss_pred             HHHHHHHHHHHHHcccccHHHHH-HHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            88888888888776654444444 44457789999999988888998888888877654                     


Q ss_pred             hhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhcccccccccccc
Q 016123          190 IFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLN  269 (394)
Q Consensus       190 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~  269 (394)
                                       ..+||..+...++.     .                      ++...+.   .   .++ ++ 
T Consensus       154 -----------------~~g~~~~f~~~~~~-----~----------------------~~~~~~~---~---~~~-~~-  181 (382)
T PRK11128        154 -----------------WFGEQAILWILTAG-----V----------------------ASMLLGQ---L---LRP-TI-  181 (382)
T ss_pred             -----------------HcChhHHHHHHHHH-----H----------------------HHHHHHH---H---ccC-CC-
Confidence                             34666544221100     0                      0000000   0   110 00 


Q ss_pred             cCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhccccee
Q 016123          270 RKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGL  349 (394)
Q Consensus       270 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~  349 (394)
                      +++           ++   +               +++      .+    ....+.++.+|+|.||.+.+..++......
T Consensus       182 ~~~-----------~~---~---------------~~~------~~----~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~  222 (382)
T PRK11128        182 MPQ-----------GE---S---------------RQQ------ES----AGWPAWKALLKEPTVWRFLLCVSLLQGSHA  222 (382)
T ss_pred             CCc-----------cc---c---------------ccc------cc----cccchHHHHHcChhHHHHHHHHHHHHHHhH
Confidence            000           00   0               000      00    012357899999999988777666655544


Q ss_pred             eeeeChHHHHHHhCCCc--chhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          350 AVMNNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       350 ~~~~n~~~i~~~~G~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      .+.+..+++.++.|.++  .+...++..+...++++..|++.||+++
T Consensus       223 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~  269 (382)
T PRK11128        223 AYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSA  269 (382)
T ss_pred             hHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence            56677778888888873  5567777888899999999999999874

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.56  E-value=9.3e-14  Score=133.96  Aligned_cols=286  Identities=13%  Similarity=0.110  Sum_probs=191.3

Q ss_pred             cCCCCcHHHHHHHHHHHHHhccc-ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHH
Q 016123            8 TSSAGKWLGFVTAVWVQAISGNN-YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGS   85 (394)
Q Consensus         8 ~~~~~~w~~l~~~~~~~~~~g~~-y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~   85 (394)
                      |..+|||+++++..+.....+.. ..|+.......+.|| +....-|.+....+..+ +++++-|+.||+|-|...++|.
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt  116 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT  116 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence            57789999998888877766653 456666667788899 55555566666666655 5899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCchHH--HHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHH
Q 016123           86 LEGLVGYGAQWLVVSRKIQPLSYW--QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDL  162 (394)
Q Consensus        86 ~~~~~g~~~~~~~~~~~~~~~~~~--~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i  162 (394)
                      ++.++|..+-..+....++ +.++  ....+..+.+.++-+....+.+...-||| ++|..|..+...++.+|.++...+
T Consensus       117 ~ln~iGa~Ir~iss~p~v~-~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll  195 (480)
T KOG2563|consen  117 VLNGIGAWIRLISSLPFVP-PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL  195 (480)
T ss_pred             HHHHHHHHHhhhccCcccc-ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence            9999999887665433232 2344  34456778888777776677789999997 689999999999999998877655


Q ss_pred             HHhhcCCChhHHHHHHHHHHHHHHHhhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHH
Q 016123          163 CSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALI  242 (394)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  242 (394)
                      -..+.++                          +++.      ++..|-....+.+.-++++                  
T Consensus       196 ppilV~~--------------------------~~~~------~~~~~~~~~~f~~~~~l~~------------------  225 (480)
T KOG2563|consen  196 PPILVPS--------------------------SKDS------EDNSWLFFTLFLGVECLAA------------------  225 (480)
T ss_pred             cceecCC--------------------------CCCc------chhHHHHHHHHHHHHHHHH------------------
Confidence            4444331                          1111      1233332211111100011                  


Q ss_pred             HHHHHHHHHHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCc
Q 016123          243 FSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGED  322 (394)
Q Consensus       243 ~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (394)
                            ++  +++.+.    .+++   +|+          .+|   +.             ...+      .+  +..--
T Consensus       226 ------l~--l~l~~~----~~~~---~P~----------tPp---s~-------------s~~~------~~--~~~f~  256 (480)
T KOG2563|consen  226 ------LL--LALVLF----VFTK---KPP----------TPP---SA-------------SQAA------LQ--DASFP  256 (480)
T ss_pred             ------HH--HHHHHH----hcCC---CCC----------CCC---ch-------------hHhh------hh--cCcHH
Confidence                  00  111111    1211   121          112   10             0000      01  01113


Q ss_pred             chHHHHhhchhHHHHHHHHHhcccceeeeeeChHHHHHHhCCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          323 HTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       323 ~t~~~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      .+.++.+++++|-++.+++.++.|.-....+.+-..+...||+  ++.....+.-+.+++|.+++|.+.||.++
T Consensus       257 ~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~  330 (480)
T KOG2563|consen  257 KSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKK  330 (480)
T ss_pred             HHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            5788999999999999999999888888888877777788887  56677777889999999999999999864

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.56  E-value=1e-13  Score=137.85  Aligned_cols=150  Identities=19%  Similarity=0.118  Sum_probs=88.5

Q ss_pred             CCcHHHHHHHHHHHHHhcccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHH
Q 016123           11 AGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGL   89 (394)
Q Consensus        11 ~~~w~~l~~~~~~~~~~g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~   89 (394)
                      ++-|...+..++...+.+  ...+.+...+++++|+|+.+.+++.+...+... .+++.|++.||+|+|++++++....+
T Consensus        10 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~   87 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWS--SWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLL   87 (420)
T ss_pred             cchHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            344554443333333322  233445556788899999999997666666665 58999999999999999988766665


Q ss_pred             HHHHHHHHHHHhccCCchHHH--HHHHHHHHhhhhhhhhhhHHHHHHH---hcccCCCchHHHHHhhhhhhHHHHHHHHH
Q 016123           90 VGYGAQWLVVSRKIQPLSYWQ--MCVFLCMGGNSTTWMNTAVLVTCIR---NFRRNRGPVSGILKGYVGLSTAIFTDLCS  164 (394)
Q Consensus        90 ~g~~~~~~~~~~~~~~~~~~~--l~~~~~l~G~g~g~~~~~~~~~~~~---~Fp~~RG~a~gl~~~~~glg~~i~~~i~~  164 (394)
                      ++.........     .+.+.  ......+.++..+..+.+.......   .++++||.+.|......++|.++.+++..
T Consensus        88 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g  162 (420)
T PRK09528         88 VLFGPFFIYVF-----APLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAG  162 (420)
T ss_pred             HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHH
Confidence            54332211100     01111  1111222232222222222223333   34567888999998888899988888766


Q ss_pred             hhc
Q 016123          165 ALF  167 (394)
Q Consensus       165 ~~~  167 (394)
                      .+.
T Consensus       163 ~l~  165 (420)
T PRK09528        163 ILF  165 (420)
T ss_pred             HHH
Confidence            554

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.56  E-value=2.1e-13  Score=133.94  Aligned_cols=238  Identities=10%  Similarity=-0.050  Sum_probs=154.0

Q ss_pred             hcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHH----HHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           35 NYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIIL----LIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~----~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      .+.|.+.+++|+|.++++++.+...+... .+++.|.+.||+|+|+..    .++..+..+..  ...       .+++|
T Consensus        25 p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~--~~~-------~~~~~   95 (382)
T TIGR00902        25 PFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAF--SAG-------AHNAW   95 (382)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH--HHh-------hhhHH
Confidence            34567888999999999997666666654 589999999999985432    33322222211  111       13688


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGA  189 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~  189 (394)
                      .+++.+++.+.+.+...+.... +..+++++|+++.|......++|..+.+++...+.+                     
T Consensus        96 ~l~~~~~l~~~~~~~~~p~~~a-l~~~~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~---------------------  153 (382)
T TIGR00902        96 LLFIAIGLFALFFSAGMPIGDA-LANTWQKQFGLDYGKVRLIGSAAFIIGSALFGGLIG---------------------  153 (382)
T ss_pred             HHHHHHHHHHHHHccchhHHHH-HHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            8888888777776654444434 445667889999999999999999998888777654                     


Q ss_pred             hhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhcccccccccccc
Q 016123          190 IFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLN  269 (394)
Q Consensus       190 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~  269 (394)
                                       ..+||..+.....+                           .+++....   .   +++    
T Consensus       154 -----------------~~g~~~~f~~~~~~---------------------------~~~~~~~~---~---~~~----  179 (382)
T TIGR00902       154 -----------------MFDEQNILAILTAG---------------------------LAFMLIGF---L---IKP----  179 (382)
T ss_pred             -----------------HcChhHHHHHHHHH---------------------------HHHHHHHH---H---cCC----
Confidence                             34566543211100                           00000000   0   111    


Q ss_pred             cCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhccccee
Q 016123          270 RKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGL  349 (394)
Q Consensus       270 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~  349 (394)
                      +++.         .++   +               +++      +. +   +..+.++.+|+|+||.+.+..++..++..
T Consensus       180 ~~~~---------~~~---~---------------~~~------~~-~---~~~~~~~~l~~~~~~~~l~~~~l~~~~~~  222 (382)
T TIGR00902       180 TIPP---------KDA---I---------------PED------ES-Q---GDSAFIALLKNPMNLRFLAAVCLIQGAHA  222 (382)
T ss_pred             CCCC---------Ccc---c---------------ccc------cc-c---cchhHHHHHcChHHHHHHHHHHHHHHHHH
Confidence            1000         000   0               000      00 0   12346789999999999998888777777


Q ss_pred             eeeeChHHHHHHhCCCc--chhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          350 AVMNNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       350 ~~~~n~~~i~~~~G~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      .+.++.+++.++.|.++  .....++..+...++.+.+|.+.||+++
T Consensus       223 ~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~  269 (382)
T TIGR00902       223 AYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSA  269 (382)
T ss_pred             HHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCH
Confidence            78888899999999874  5567778889999999999999999863

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.55  E-value=1.9e-13  Score=135.09  Aligned_cols=136  Identities=15%  Similarity=0.073  Sum_probs=99.4

Q ss_pred             hcccccchh-cHHHHHHHcCCChhhhHHHHHHHHhhhhhhhhhHhhhhcc-----CchH-HHHHHHHHHHHHHHHHHHHH
Q 016123           27 SGNNYTFSN-YSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRI-----PAPI-ILLIGSLEGLVGYGAQWLVV   99 (394)
Q Consensus        27 ~g~~y~~~~-~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----G~r~-~~~~g~~~~~~g~~~~~~~~   99 (394)
                      -|..+.+.. -.|.+-++.|+|.+|++++...... .++.++.|++.||+     |+|| .+.++.+..+++....++..
T Consensus        11 ~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~   89 (402)
T PRK11902         11 SGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP   89 (402)
T ss_pred             HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC
Confidence            344444432 3455666789999999997655543 46699999999999     8876 67777777777777665431


Q ss_pred             HhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          100 SRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       100 ~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      .    ..+++.+++..++.+...+..+++....+.+++|+ +|+++.++...++++|..+.+.+...+.
T Consensus        90 ~----~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~  154 (402)
T PRK11902         90 P----HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA  154 (402)
T ss_pred             c----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            1    13467676666666666666667778889999985 5999999999999999888887766554

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.53  E-value=1.4e-12  Score=124.53  Aligned_cols=264  Identities=18%  Similarity=0.150  Sum_probs=182.7

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      -...+..|.+++.|++++.|.+++..+...+... +++.|++.+|+|.|+.+++|..++++|..+++-+...    .++.
T Consensus        30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~----~~y~  105 (422)
T COG0738          30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASS----KSYG  105 (422)
T ss_pred             hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhh----hhHH
Confidence            3557889999999999999999988887777754 8899999999999999999999999999998754221    3455


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG  188 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~  188 (394)
                      .++...++.|.|.+...++....+....|+ +...-+.+.++.+++|+++.+++...++..++.                
T Consensus       106 ~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~----------------  169 (422)
T COG0738         106 FFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVA----------------  169 (422)
T ss_pred             HHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhh----------------
Confidence            555677889999999889999999999975 677889999999999999999999887753200                


Q ss_pred             hhhcccccCCC-CCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhcccccccccc
Q 016123          189 AIFFLRETTPA-STVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWN  267 (394)
Q Consensus       189 ~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~  267 (394)
                          ..-.++. ....++....+++.|...+                          .+.+ ++..-  ..    +. + 
T Consensus       170 ----~~~~~~~~~~~~~~~~~~v~~pYl~~~--------------------------~~lv-ll~v~--~~----~~-k-  210 (422)
T COG0738         170 ----LTMSAAQILAIKGADASSVQFPYLILA--------------------------GLLV-LLAVL--IL----LS-K-  210 (422)
T ss_pred             ----hccCHHHHHHHHHHHHHhhhhHHHHHH--------------------------HHHH-HHHHH--HH----hc-c-
Confidence                0000000 0000000112233222111                          0111 11100  00    11 1 


Q ss_pred             cccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhcccc
Q 016123          268 LNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGT  347 (394)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~  347 (394)
                        .|+.+       +.+|                    +.  .   +     ..+.+..+++|+|.+|+-.+..++-.|.
T Consensus       211 --~p~~~-------~~~~--------------------~~--~---~-----~~~~~~~~l~~~~~~~~gvl~~FlYVG~  251 (422)
T COG0738         211 --LPDLQ-------VAAP--------------------SL--G---A-----SGSAGLSSLFQNKHLRLGVLAIFLYVGA  251 (422)
T ss_pred             --CCcCC-------cccc--------------------cc--c---c-----cccchHHHHHhChHHHHHHHHHHHHHhH
Confidence              11000       0011                    00  0   0     0122678999999999999999999999


Q ss_pred             eeeeeeChHHHHHH-hCCC--cchhhHHHHHHHHHHhhhhhccccchh
Q 016123          348 GLAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYF  392 (394)
Q Consensus       348 g~~~~~n~~~i~~~-~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~  392 (394)
                      -.+.-+.+.+++.+ .|.+  +++.+++.+-++-++||++.-++..|+
T Consensus       252 Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~  299 (422)
T COG0738         252 EVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI  299 (422)
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999 6766  477899999999999998777665554

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.52  E-value=1.8e-14  Score=139.21  Aligned_cols=142  Identities=18%  Similarity=0.164  Sum_probs=116.8

Q ss_pred             CcHHHHHHHHHHHHHhc-ccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHH
Q 016123           12 GKWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGL   89 (394)
Q Consensus        12 ~~w~~l~~~~~~~~~~g-~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~   89 (394)
                      +.|+.++.-+++.+..- ..|+..--.+.++++||.+.+..+++++...+... .+|+.|++.|||.||.++.+|..++.
T Consensus        30 ~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~  109 (493)
T KOG1330|consen   30 SPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWT  109 (493)
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHH
Confidence            34444554444444332 35666666788999999999999998887777765 59999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHH
Q 016123           90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFT  160 (394)
Q Consensus        90 ~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~  160 (394)
                      ++.++.++.       ..+|++.++|.+.|+|.+...+.+...++..||+ +|+++.++...+...|+.+.-
T Consensus       110 ~Av~~~~fs-------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~  174 (493)
T KOG1330|consen  110 LAVFASGFS-------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGY  174 (493)
T ss_pred             HHHHHHHHH-------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeE
Confidence            999988775       3689999999999999998888899999999995 899999999988877765553

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.51  E-value=4e-13  Score=149.66  Aligned_cols=240  Identities=11%  Similarity=0.025  Sum_probs=150.8

Q ss_pred             HHHHcCCChhh-hHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHH--HHHHHHHHHHHHHHHHHhccCCchHHHHHHHH
Q 016123           40 LKTLMNLTQLE-LNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLI--GSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFL  115 (394)
Q Consensus        40 l~~~~g~s~~~-~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~--g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~  115 (394)
                      +.+..+.+... .++...+..+... +++++|++.||+|+|+++..  ...+.........+..      .+++++++.+
T Consensus        42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~------~s~~~l~~~~  115 (1140)
T PRK06814         42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL------NSVPLLFAAL  115 (1140)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHH
Confidence            33444444434 4445555556554 58999999999999998643  2222222222222211      3688899999


Q ss_pred             HHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhhccc
Q 016123          116 CMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLR  194 (394)
Q Consensus       116 ~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  194 (394)
                      ++.|++.++..++..+++.+++| ++|++++|+..++.++|.++.+++...+...                         
T Consensus       116 ~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~-------------------------  170 (1140)
T PRK06814        116 FLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS-------------------------  170 (1140)
T ss_pred             HHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc-------------------------
Confidence            99999999888888899999998 5799999999999999999998888777642                         


Q ss_pred             ccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhcccccccccccccCCCC
Q 016123          195 ETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNLNRKRTE  274 (394)
Q Consensus       195 ~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~  274 (394)
                                   .+|+..+....     .+.                       ++...+...    +.+    .++.+
T Consensus       171 -------------~~~~~~~~~~~-----~~~-----------------------~~~~~~~~~----~~~----~~~~~  201 (1140)
T PRK06814        171 -------------GNFVILVALLM-----GIA-----------------------VLGWLASLF----IPK----TGNAA  201 (1140)
T ss_pred             -------------cccHHHHHHHH-----HHH-----------------------HHHHHHHhh----CCC----CCCCC
Confidence                         34443321100     000                       000000000    110    00000


Q ss_pred             CCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhcccceeeeeeC
Q 016123          275 PDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNN  354 (394)
Q Consensus       275 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g~~~~~n  354 (394)
                            .+.++   +               .+.  .        ......++++.+++.+|.+.+.+++......++...
T Consensus       202 ------~~~~~---~---------------~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (1140)
T PRK06814        202 ------PDLKI---D---------------RNI--I--------RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQ  247 (1140)
T ss_pred             ------CCCee---c---------------cch--H--------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence                  00000   0               000  0        000124678889999999999888776666666677


Q ss_pred             hHHHHHH-hCCC--cchhhHHHHHHHHHHhhhhhccccchhc
Q 016123          355 MGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFI  393 (394)
Q Consensus       355 ~~~i~~~-~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~  393 (394)
                      ++.+.++ +|.+  ..+.+.+.++++..+|.++.|+++|+..
T Consensus       248 ~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~  289 (1140)
T PRK06814        248 LPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRI  289 (1140)
T ss_pred             hHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCce
Confidence            8888876 4665  3667889999999999999999998754

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.50  E-value=1.4e-16  Score=159.51  Aligned_cols=156  Identities=18%  Similarity=0.159  Sum_probs=124.0

Q ss_pred             hhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhh
Q 016123           50 ELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTA  128 (394)
Q Consensus        50 ~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~  128 (394)
                      +.++..+...+|..+ +++.|.+.||+|||+++.++.++..+|.++..++...    .+++.+++.|++.|++.|..+..
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~R~~~G~~~g~~~~~  122 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY----NNFWMLLIGRFLIGFGIGGAYVV  122 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccc
Confidence            355666777778765 7899999999999999999999999999887764100    16778888999999999988888


Q ss_pred             HHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcC---CChhHHHHHHHHHHHHHHHhhhhcccccCCCCCccc
Q 016123          129 VLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA---DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDE  204 (394)
Q Consensus       129 ~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~  204 (394)
                      ...++.|.-| ++||...++...+..+|..+...+......   ++.|+..+..+.++.++.++..+++||+|++...++
T Consensus       123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~  202 (451)
T PF00083_consen  123 SPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKG  202 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccc
Confidence            8888999987 579999999999998887766555433322   246999999999999888888899999999986544


Q ss_pred             ccccc
Q 016123          205 EKEEA  209 (394)
Q Consensus       205 ~~~~~  209 (394)
                      +.++.
T Consensus       203 ~~~~A  207 (451)
T PF00083_consen  203 RDEEA  207 (451)
T ss_pred             ccccc
Confidence            33333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.49  E-value=2.1e-12  Score=127.38  Aligned_cols=130  Identities=17%  Similarity=0.047  Sum_probs=79.1

Q ss_pred             cHHH-HHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHH
Q 016123           36 YSDA-LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRK-IQPLSYWQMC  112 (394)
Q Consensus        36 ~~~~-l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~-~~~~~~~~l~  112 (394)
                      +.|. +++++|+|..+.+++.+...+... .+++.|++.||+|||+.++.+.+..+++........... ......+..+
T Consensus        24 ~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (396)
T TIGR00882        24 FFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAI  103 (396)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4443 577899999999997666666665 589999999999999999987776665544322111000 0000122233


Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhh
Q 016123          113 VFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSAL  166 (394)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~  166 (394)
                      +.+++.|++.+...+.......+ .+++++...|.......+|.++.+.+...+
T Consensus       104 ~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l  156 (396)
T TIGR00882       104 VGGLYLGFVFSAGAGAIEAYIEK-VSRNSNFEYGKARMFGCVGWALCASIAGIL  156 (396)
T ss_pred             HHHHHHHHHhccchhhHHHHHHH-hhhhcccccchhhhhcccHHHHHHHHHhhh
Confidence            44566666555443322222222 224466677777777788888877765443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.47  E-value=1.5e-12  Score=129.58  Aligned_cols=81  Identities=11%  Similarity=0.083  Sum_probs=59.8

Q ss_pred             cHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCc-hHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 016123           36 YSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPA-PIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (394)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~-r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~  113 (394)
                      +.+.+++++|+|.+|++++.....++.. .+++.|++.||+|+ |+++.++.+...++.....+.       ++++.+++
T Consensus        25 l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~   97 (418)
T TIGR00889        25 LGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV-------TTPAGMFP   97 (418)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh-------cCHHHHHH
Confidence            3444678899999999998777777776 48999999999965 778887777776666555432       35666666


Q ss_pred             HHHHHhhhhh
Q 016123          114 FLCMGGNSTT  123 (394)
Q Consensus       114 ~~~l~G~g~g  123 (394)
                      .+++.|++.+
T Consensus        98 ~~~l~~~~~~  107 (418)
T TIGR00889        98 VLLANSLAYM  107 (418)
T ss_pred             HHHHHHHHHc
Confidence            6777666544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.46  E-value=6.4e-12  Score=123.88  Aligned_cols=147  Identities=14%  Similarity=0.038  Sum_probs=85.5

Q ss_pred             CcHHHHHHHHHHHHHhcccccchhcHHHHHHHcCCChhhhHHHHH-HHHhhhhhhhhhHhhhhccCchHHHH-HHHHHHH
Q 016123           12 GKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSV-VKDIGKAFGLLAGLASDRIPAPIILL-IGSLEGL   89 (394)
Q Consensus        12 ~~w~~l~~~~~~~~~~g~~y~~~~~~~~l~~~~g~s~~~~~~~~~-~~~~~~~~~~~~G~l~Dr~G~r~~~~-~g~~~~~   89 (394)
                      +.|..++..++.....+.  ......+.+++++|+|.++++++.+ ....+...+++.|.+.||+|+||.++ .+.+..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~--~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~   93 (393)
T PRK15011         16 TSTAFLIVAFLTGIAGAL--QTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGV   93 (393)
T ss_pred             hhHHHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence            345444444443332221  2233444478999999999999644 44455566655555599999998754 4455555


Q ss_pred             HHHHHHHHHHHhccCCchHHHHHHHH-HHHhhhhhhhhhhHHHHHHHhccc-CC--CchHHHHHhhhhhhHHHHHHHHHh
Q 016123           90 VGYGAQWLVVSRKIQPLSYWQMCVFL-CMGGNSTTWMNTAVLVTCIRNFRR-NR--GPVSGILKGYVGLSTAIFTDLCSA  165 (394)
Q Consensus        90 ~g~~~~~~~~~~~~~~~~~~~l~~~~-~l~G~g~g~~~~~~~~~~~~~Fp~-~R--G~a~gl~~~~~glg~~i~~~i~~~  165 (394)
                      ++..+..++       ++++.+++.+ ++.+.+. ...+.......++.|+ +|  +...++..++..+|..+.+++...
T Consensus        94 ~~~~~~~~~-------~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~  165 (393)
T PRK15011         94 LACTLFAWN-------RNYFVLLFVGVFLSSFGS-TANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYA  165 (393)
T ss_pred             HHHHHHHHh-------hHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            665554443       3566665544 4444433 3333333444454443 23  233477777888998988888776


Q ss_pred             hcC
Q 016123          166 LFA  168 (394)
Q Consensus       166 ~~~  168 (394)
                      +.+
T Consensus       166 l~~  168 (393)
T PRK15011        166 LAM  168 (393)
T ss_pred             HHH
Confidence            653

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.43  E-value=9.1e-12  Score=126.29  Aligned_cols=184  Identities=9%  Similarity=0.012  Sum_probs=130.4

Q ss_pred             CcCCCCcHHHHHHHHHHHHH-hcccccchhc-HHHHHHHcCCChhhhHHHHHHHHhhh-hhhhhhHhhhhc-cCchHHHH
Q 016123            7 YTSSAGKWLGFVTAVWVQAI-SGNNYTFSNY-SDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDR-IPAPIILL   82 (394)
Q Consensus         7 ~~~~~~~w~~l~~~~~~~~~-~g~~y~~~~~-~~~l~~~~g~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr-~G~r~~~~   82 (394)
                      ++..+++|+.+...+..... ....|....+ ...+++++|++.++.+++........ ...+++|++.|| +|+|++++
T Consensus         6 ~~~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~   85 (489)
T PRK10207          6 PMGLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIV   85 (489)
T ss_pred             CcchhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHH
Confidence            44455666655555444332 2234555433 44568899999999998655555444 457899999999 99999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc---CCCchHHHHHhhhhhhHHHH
Q 016123           83 IGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR---NRGPVSGILKGYVGLSTAIF  159 (394)
Q Consensus        83 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~---~RG~a~gl~~~~~glg~~i~  159 (394)
                      +|.+++.+|++.+++..      .....+++.+.+.|+|.|...+.....+.++||+   +|+.+.++...+.++|+++.
T Consensus        86 ~g~~~~~~g~~~~~~~~------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g  159 (489)
T PRK10207         86 LGAIVLAIGYFMTGMSL------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIS  159 (489)
T ss_pred             HHHHHHHHHHHHHHHhc------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHH
Confidence            99999999998887641      1123345678888999998877778899999973   35889999999999999988


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHHHHhhhhccccc
Q 016123          160 TDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRET  196 (394)
Q Consensus       160 ~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  196 (394)
                      +.+...+.+...|++.+++..+..++.++..++.++.
T Consensus       160 ~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~  196 (489)
T PRK10207        160 LSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGM  196 (489)
T ss_pred             HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchh
Confidence            8877777665556666666555555555555444433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.35  E-value=3.8e-11  Score=121.93  Aligned_cols=170  Identities=15%  Similarity=0.077  Sum_probs=111.8

Q ss_pred             ccccchhcHHHH-HHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 016123           29 NNYTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPL  106 (394)
Q Consensus        29 ~~y~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~  106 (394)
                      ..|.+..+.|++ ++++|++..+..++.....++... .++.|++.||+|||+++.++.+...++..........    .
T Consensus       265 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~----~  340 (490)
T PRK10642        265 TYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS----N  340 (490)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC----C
Confidence            345666677876 567899988776665555666654 7899999999999999988876544333222111111    2


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCC-ChhHHHHHHHHHHHH
Q 016123          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFV  184 (394)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~  184 (394)
                      +...+++.+++.|++.+...........+.||+ .||+++|+......+++.+.+.+...+.+. +.++...++..++++
T Consensus       341 ~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~  420 (490)
T PRK10642        341 VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAV  420 (490)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            345555566666665554444455667789995 599999985544456667777777766653 234444445566777


Q ss_pred             HHHhhhhcccccCCCCCc
Q 016123          185 VCLGAIFFLRETTPASTV  202 (394)
Q Consensus       185 v~~~~~~~~~~~p~~~~~  202 (394)
                      ++++..+++||.|++..+
T Consensus       421 i~~~~~~~~pes~~~~~~  438 (490)
T PRK10642        421 IGLITGVTMKETANRPLK  438 (490)
T ss_pred             HHHHHHHHhccccCCCCC
Confidence            777777788999887653

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.35  E-value=9.4e-12  Score=127.31  Aligned_cols=151  Identities=16%  Similarity=0.120  Sum_probs=126.3

Q ss_pred             HHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhh
Q 016123           42 TLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGN  120 (394)
Q Consensus        42 ~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  120 (394)
                      +.++.+.....+..+...+|..+ +++.|.+.||+|||++++.+.++..++.+..+++       ++++.+++.|++.|+
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-------~~~~~~~~~Rfl~G~  183 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-------PNYWMFLIFRFLSGF  183 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-------CcHHHHHHHHHHHHh
Confidence            56677777777777777888876 6799999999999999999999999988777765       589999999999999


Q ss_pred             hhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhhcccccCCC
Q 016123          121 STTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPA  199 (394)
Q Consensus       121 g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~  199 (394)
                      +.+..+.....+.+++++ ++|+.+..+ ......++.+.++....+..  .||++.+....+.++.++..++.++.|++
T Consensus       184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rw  260 (521)
T KOG0255|consen  184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRW  260 (521)
T ss_pred             hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHH
Confidence            999888888899999996 679999999 77777788888887777776  67887777777777777777777899998


Q ss_pred             CCc
Q 016123          200 STV  202 (394)
Q Consensus       200 ~~~  202 (394)
                      +..
T Consensus       261 l~~  263 (521)
T KOG0255|consen  261 LLS  263 (521)
T ss_pred             HHH
Confidence            764

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.34  E-value=8.8e-11  Score=110.78  Aligned_cols=240  Identities=13%  Similarity=0.057  Sum_probs=180.3

Q ss_pred             cccchhcHHHHHHHcCCChhhhHHHHHHHHhhh-hhhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (394)
Q Consensus        30 ~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  108 (394)
                      +.+.+...+++++++|.|.++.+.+++.-.+.. .++|++.++..|+|.++.+..+.++.++|..+-...        +.
T Consensus        28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~--------~~   99 (395)
T COG2807          28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG--------GL   99 (395)
T ss_pred             hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--------cH
Confidence            456677889999999999999999877666555 569999999999999999999999999999876532        35


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 016123          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG  188 (394)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~  188 (394)
                      +.++..-.+.|.|.+..++--...+-++||||-|..+|+..+..++|+++.+.+...+-+.                   
T Consensus       100 ~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~-------------------  160 (395)
T COG2807         100 PLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQH-------------------  160 (395)
T ss_pred             HHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHh-------------------
Confidence            6677778889999998888888889999999999999999999999998887766554331                   


Q ss_pred             hhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhccccccccccc
Q 016123          189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL  268 (394)
Q Consensus       189 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~  268 (394)
                                        ..+||....+.....+.+                        ++.-.|.       ..|   
T Consensus       161 ------------------~~gW~~aL~~WAl~allA------------------------l~~WlPq-------~~r---  188 (395)
T COG2807         161 ------------------SGGWRGALGFWALLALLA------------------------LLIWLPQ-------ALR---  188 (395)
T ss_pred             ------------------hccHHHHHHHHHHHHHHH------------------------HHHHhhh-------ccc---
Confidence                              346776544333211111                        1111221       000   


Q ss_pred             ccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhcccce
Q 016123          269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG  348 (394)
Q Consensus       269 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g  348 (394)
                       +            +.+   +               .+.      +       ..+-....|+|.-|.+-+-+.+.+...
T Consensus       189 -~------------~~~---~---------------~~~------~-------~~~~~~vw~~~~aW~vtLfmGlqS~~~  224 (395)
T COG2807         189 -E------------QAA---S---------------IAT------K-------LVSVRKVWRSPLAWQVTLFMGLQSLLY  224 (395)
T ss_pred             -c------------ccc---c---------------ccc------c-------cccccccccCchhHHHHHHHHhhHHHH
Confidence             0            000   0               000      0       111234789999999999999999999


Q ss_pred             eeeeeChHHHHHHhCCC--cchhhHHHHHHHHHHhhhhhccccchh
Q 016123          349 LAVMNNMGQIGLALGYV--DVSIFVSLTSIWGFFGRIISGSVSEYF  392 (394)
Q Consensus       349 ~~~~~n~~~i~~~~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~  392 (394)
                      ..++.=+++|+.|.|++  ++..++++..+.....-+...++.+|.
T Consensus       225 Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~  270 (395)
T COG2807         225 YIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRS  270 (395)
T ss_pred             HHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998  477899999999999999888888764

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.31  E-value=8.1e-11  Score=119.06  Aligned_cols=157  Identities=13%  Similarity=0.014  Sum_probs=118.2

Q ss_pred             ccchhcHHH-HHHH--cCCChhhhHHHHHHHHhhhh-hhhhhHhhhhc-cCchHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016123           31 YTFSNYSDA-LKTL--MNLTQLELNNLSVVKDIGKA-FGLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQP  105 (394)
Q Consensus        31 y~~~~~~~~-l~~~--~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr-~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~  105 (394)
                      |....+.|. ++++  +|+|..+.+++.....++.. ..+++|++.|| +|+|+++.++.++.+++++++++.       
T Consensus        27 ~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-------   99 (475)
T TIGR00924        27 YGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-------   99 (475)
T ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-------
Confidence            443344444 4666  89999999997666666655 47899999999 899999999999999999887653       


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc----CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHH
Q 016123          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR----NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIV  181 (394)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~----~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~  181 (394)
                      ++.+.+++.+++.|+|.|...+.....++++||+    +|+.+.++...+..+|+++.+.+...+.+...|+..+.++.+
T Consensus       100 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~  179 (475)
T TIGR00924       100 IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAV  179 (475)
T ss_pred             ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            2456667778888999888777778889999974    389999999999999999999888877765456655555544


Q ss_pred             HHHHHHhhhhccc
Q 016123          182 PFVVCLGAIFFLR  194 (394)
Q Consensus       182 ~~~v~~~~~~~~~  194 (394)
                      ..+++++..++.+
T Consensus       180 ~~~~~~l~~~~~~  192 (475)
T TIGR00924       180 GMVIGLLTFFAGR  192 (475)
T ss_pred             HHHHHHHHHHHcc
Confidence            4444444444433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.30  E-value=4.2e-10  Score=114.83  Aligned_cols=156  Identities=15%  Similarity=0.060  Sum_probs=109.6

Q ss_pred             hhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 016123           34 SNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (394)
Q Consensus        34 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~  112 (394)
                      +...+.+.+++|-+ ....|+++...++.. ..++.|++.|.+|||..+++|.++..+|.++.+.+       ++...++
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-------~~~~~~i  135 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-------QNMNTFI  135 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-------CcHHHHH
Confidence            44456788899876 566787777777765 47999999999999999999999999999988754       4677788


Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh-h
Q 016123          113 VFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGA-I  190 (394)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~-~  190 (394)
                      ....+.|+|.|.... ....++|..| |+|+.+.++.....-....+.+.+.+.+.....||+.+.+.+....++++. .
T Consensus       136 ag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  136 AGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             HHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence            888898998877654 3445788888 569888777665443333344445545544556777666666555555444 4


Q ss_pred             hcccccCC
Q 016123          191 FFLRETTP  198 (394)
Q Consensus       191 ~~~~~~p~  198 (394)
                      ++.++|++
T Consensus       215 ~fY~PP~~  222 (599)
T PF06609_consen  215 FFYFPPPR  222 (599)
T ss_pred             HHhCCCch
Confidence            44454443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.30  E-value=1.5e-10  Score=117.81  Aligned_cols=155  Identities=8%  Similarity=0.040  Sum_probs=113.9

Q ss_pred             cccchhcHHH-HHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhc-cCchHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 016123           30 NYTFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQPL  106 (394)
Q Consensus        30 ~y~~~~~~~~-l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr-~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~  106 (394)
                      .|.+..+.+. +++++|++.++.+++......... ..+++|++.|| +|+|+++.++.++.++++.++.++.      +
T Consensus        37 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~------~  110 (500)
T PRK09584         37 YYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG------H  110 (500)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc------c
Confidence            3555455444 578999999998885544443333 35789999999 5999999999999999988776531      2


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccC---CCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 016123          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN---RGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPF  183 (394)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~---RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~  183 (394)
                      +.+.+++.+++.|+|.|.........+.++||++   |+.+.++...+..+|+.+.+.+...+.+...|+..+.++.+..
T Consensus       111 ~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~  190 (500)
T PRK09584        111 DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGM  190 (500)
T ss_pred             cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence            3445556778889998877777778899999842   4567888888999999999888888877656777666666555


Q ss_pred             HHHHhhh
Q 016123          184 VVCLGAI  190 (394)
Q Consensus       184 ~v~~~~~  190 (394)
                      +++++..
T Consensus       191 ~i~~i~~  197 (500)
T PRK09584        191 LITVVNF  197 (500)
T ss_pred             HHHHHHH
Confidence            5544443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=1.1e-11  Score=117.77  Aligned_cols=147  Identities=19%  Similarity=0.194  Sum_probs=119.8

Q ss_pred             HcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhh
Q 016123           43 LMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNS  121 (394)
Q Consensus        43 ~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g  121 (394)
                      +.+-+.++++++.....+..+ ..|+.|.+.||+|+|..+++|...+....+++++.       .+++.+++.|.+.|+|
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-------~sy~~l~vAR~LQgvg  172 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-------NSYPMLFVARSLQGVG  172 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-------chhHHHHHHHHHhhhh
Confidence            456667888886555555665 59999999999999999999999999999998864       4788899999999999


Q ss_pred             hhhhhhhHHHHHHHhccc--CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChh-HHHHHHHHHHHHHHHhhhhccccc
Q 016123          122 TTWMNTAVLVTCIRNFRR--NRGPVSGILKGYVGLSTAIFTDLCSALFADDPA-KFLFMLAIVPFVVCLGAIFFLRET  196 (394)
Q Consensus       122 ~g~~~~~~~~~~~~~Fp~--~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~  196 (394)
                      .++..++...++++.||+  +||.++|+..++.++|-.+.+++...+++-.+. .-++.++++..+-..+-.+.+++.
T Consensus       173 sA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~  250 (464)
T KOG3764|consen  173 SAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPT  250 (464)
T ss_pred             HHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcc
Confidence            999999999999999995  489999999999999999999988888775433 345556666666555555555443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.29  E-value=3.2e-11  Score=120.12  Aligned_cols=128  Identities=14%  Similarity=-0.002  Sum_probs=86.3

Q ss_pred             cHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhc----cCchH-HHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           36 YSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDR----IPAPI-ILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr----~G~r~-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      +.+.+.+++|++..+++++.+...+... ..|+.|+++||    +|||| .++++.+..+++.+++.... +.......+
T Consensus        22 l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~-~~~~~~~~~  100 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTP-DFSATGKLV  100 (437)
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCC-CCCcchHHH
Confidence            4455688999999999997776666665 58999999998    67745 56778788887777665421 100001133


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcc--cCCCchHHHHHhhhhhhHHHHHHHHH
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCS  164 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gl~~~~~glg~~i~~~i~~  164 (394)
                      .+++.+++.+.+.++..++..+...+..+  ++|+++.++...+..+|+.+.+.+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~  157 (437)
T TIGR00792       101 YAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVL  157 (437)
T ss_pred             HHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445666677777655555566666653  57999999988877777766655443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.25  E-value=5.6e-10  Score=112.47  Aligned_cols=158  Identities=11%  Similarity=0.029  Sum_probs=111.4

Q ss_pred             ccccchhcHHHH-HHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhcc-CchHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016123           29 NNYTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRI-PAPIILLIGSLEGLVGYGAQWLVVSRKIQP  105 (394)
Q Consensus        29 ~~y~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~-G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~  105 (394)
                      ..|....+.|.+ ++++|++..+.+.+........+ ..+++|++.||+ |+|+++++|.++..+|++++...  +    
T Consensus        24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~--~----   97 (493)
T PRK15462         24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS--E----   97 (493)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh--h----
Confidence            456666666654 77899999999987666555554 478999999999 99999999999999998766432  1    


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc---CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 016123          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR---NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVP  182 (394)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~---~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~  182 (394)
                      .+...+++...+.++|.|.......+.+.+.||+   +|..+.++...+..+|+.+.+.+...+.+...|+..+.++++.
T Consensus        98 ~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaig  177 (493)
T PRK15462         98 IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVG  177 (493)
T ss_pred             cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence            1112233333334455555444456778999984   5999999999999999999998888887665566655555555


Q ss_pred             HHHHHhhhhc
Q 016123          183 FVVCLGAIFF  192 (394)
Q Consensus       183 ~~v~~~~~~~  192 (394)
                      .+++++..++
T Consensus       178 m~l~li~~~~  187 (493)
T PRK15462        178 MIAGLVIFLC  187 (493)
T ss_pred             HHHHHHHHHH
Confidence            5555554444

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.23  E-value=5.7e-10  Score=109.99  Aligned_cols=157  Identities=10%  Similarity=0.055  Sum_probs=107.9

Q ss_pred             cchhcHHH-HHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           32 TFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        32 ~~~~~~~~-l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      .+..+.|. +++++|++..+.+++.....+..+ ..++.|++.||+|+|+.+..+.+...+........       ++.+
T Consensus       234 ~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~  306 (393)
T PRK15011        234 LYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-------HSPA  306 (393)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-------hhHH
Confidence            34445554 467899999998886544444444 37899999999999998887766555444332221       2344


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGA  189 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~  189 (394)
                      .+.+.+++.+++.+...........+.+|++||++.++......+|..+.+.+...+.+...++..+.++.+..++.++.
T Consensus       307 ~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~  386 (393)
T PRK15011        307 ILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFC  386 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            44455666665555544445566788999999999999988888999999888877766545666666666666666666


Q ss_pred             hhcccc
Q 016123          190 IFFLRE  195 (394)
Q Consensus       190 ~~~~~~  195 (394)
                      .+++|+
T Consensus       387 ~~~~~~  392 (393)
T PRK15011        387 LLRIKD  392 (393)
T ss_pred             HHhhcC
Confidence            666553

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.22  E-value=5.8e-10  Score=109.72  Aligned_cols=253  Identities=11%  Similarity=-0.029  Sum_probs=142.1

Q ss_pred             HHhcccccc-hhcHHHHHHHcCCChhhhHHHHH--HHHhhhh-hhhhh-HhhhhccCchHHHHHHHHHHHH-HHHHHHHH
Q 016123           25 AISGNNYTF-SNYSDALKTLMNLTQLELNNLSV--VKDIGKA-FGLLA-GLASDRIPAPIILLIGSLEGLV-GYGAQWLV   98 (394)
Q Consensus        25 ~~~g~~y~~-~~~~~~l~~~~g~s~~~~~~~~~--~~~~~~~-~~~~~-G~l~Dr~G~r~~~~~g~~~~~~-g~~~~~~~   98 (394)
                      +..|..+.+ ..+.|.+.++.|.|.++++.++.  ...+... .+|+. ++..||+|+||..+++..+... ........
T Consensus        11 ~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~   90 (390)
T TIGR02718        11 LSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALV   90 (390)
T ss_pred             HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcC
Confidence            344554333 35667788889999999999642  2233443 47777 4579999999997666543222 22222211


Q ss_pred             HHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHH
Q 016123           99 VSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFM  177 (394)
Q Consensus        99 ~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~  177 (394)
                        ........+.+ ...++.++..+......-....++.++ +++...+....+..+|..+.+.....+.+         
T Consensus        91 --~~~~~~~~~~~-~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~---------  158 (390)
T TIGR02718        91 --GPDVAGAGWAV-GLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG---------  158 (390)
T ss_pred             --CcchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence              00000112222 222333333344444444566778874 57888888888888888877765555443         


Q ss_pred             HHHHHHHHHHhhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhh
Q 016123          178 LAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAI  257 (394)
Q Consensus       178 ~~~~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~  257 (394)
                                                   ..+||..+...+.+.+                           +...+. +
T Consensus       159 -----------------------------~~gw~~~f~~~a~l~~---------------------------~~~~~~-~  181 (390)
T TIGR02718       159 -----------------------------KFGQRPAFLLVACVPL---------------------------ASLVCV-L  181 (390)
T ss_pred             -----------------------------HhCHHHHHHHHHHHHH---------------------------HHHHHH-H
Confidence                                         3466655433221100                           000110 0


Q ss_pred             cccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHH
Q 016123          258 PVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWIL  337 (394)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll  337 (394)
                      .    +++    +++          .++   +               +..      +      +..+.++.+|+|.+|.+
T Consensus       182 ~----~~~----~~~----------~~~---~---------------~~~------~------~~~~~~~~l~~~~~~~~  213 (390)
T TIGR02718       182 W----LKD----RAV----------ASP---E---------------APL------A------RRASLFRFFRRPLAWSL  213 (390)
T ss_pred             H----cCC----CCc----------Ccc---c---------------cch------h------hHHHHHHHHcCcCHHHH
Confidence            0    111    000          000   0               000      0      01246789999999988


Q ss_pred             HHHHHhcccceeeeeeChHHHHHHhCCCc--chhhHHHHH-HHHHHhhhhhccccchhcC
Q 016123          338 FVSFLCGVGTGLAVMNNMGQIGLALGYVD--VSIFVSLTS-IWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       338 ~~~~~~~~g~g~~~~~n~~~i~~~~G~~~--~a~~vsl~s-i~~~~GRl~~G~lsD~~~r  394 (394)
                      ....++............+++.++.|++.  ......+.. +...+|.++.|++.||++|
T Consensus       214 ~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~  273 (390)
T TIGR02718       214 LALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGL  273 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Confidence            77776665544455556778889999873  445555555 4677899999999999874

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.22  E-value=2.2e-10  Score=110.99  Aligned_cols=165  Identities=16%  Similarity=0.136  Sum_probs=110.9

Q ss_pred             ccchhcHHHHHHH-cC-------CChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016123           31 YTFSNYSDALKTL-MN-------LTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSR  101 (394)
Q Consensus        31 y~~~~~~~~l~~~-~g-------~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~  101 (394)
                      ++.+...+-+... +|       ++....+.+..+..+|.++ +++.|++.||+|||+++....+++.++.+..++....
T Consensus        58 F~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~  137 (538)
T KOG0252|consen   58 FSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGT  137 (538)
T ss_pred             hhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCC
Confidence            4445555545332 22       3444555677778889886 8999999999999999999999999998866554322


Q ss_pred             ccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHH---HHHHHhhcCC--------
Q 016123          102 KIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIF---TDLCSALFAD--------  169 (394)
Q Consensus       102 ~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~---~~i~~~~~~~--------  169 (394)
                      ..+..-.+.++.+|++.|+|.|.-|+.+.+..+|.-. ++||.-.+...+..|+|....   +.+....++.        
T Consensus       138 ~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~  217 (538)
T KOG0252|consen  138 TSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTY  217 (538)
T ss_pred             CCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCc
Confidence            2221225678889999999999998777666666665 469999999888887775433   3333333321        


Q ss_pred             ----ChhHHHHHHHHHHHHHHHhhhhcccc
Q 016123          170 ----DPAKFLFMLAIVPFVVCLGAIFFLRE  195 (394)
Q Consensus       170 ----~~~~~~~~~~~~~~~v~~~~~~~~~~  195 (394)
                          ..||..+.++++|++..+.--+.+|+
T Consensus       218 ~~ld~vWRl~~glg~vpa~~~ly~Rl~M~E  247 (538)
T KOG0252|consen  218 PHLDGVWRIIFGLGAVPALLVLYFRLKMPE  247 (538)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence                13666666666666655544444433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.12  E-value=7e-10  Score=91.46  Aligned_cols=120  Identities=16%  Similarity=0.169  Sum_probs=92.5

Q ss_pred             hhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc
Q 016123           60 IGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR  138 (394)
Q Consensus        60 ~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp  138 (394)
                      ++.. .+++.|++.||+|+|+.+..+.....++.......       ++.+.+.+.+++.|++.+..+........+.+|
T Consensus         9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------SNITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            3443 47899999999999999999998888887766543       356777778888998888777777788899998


Q ss_pred             c-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 016123          139 R-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVC  186 (394)
Q Consensus       139 ~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~  186 (394)
                      + +|+++.++......+|..+.+.+...+.+...++..+.+.....++.
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            5 69999999999999999999888887776544544444444333333

>TIGR00889 2A0110 nucleoside transporter

Probab=99.12  E-value=1.7e-09  Score=107.58  Aligned_cols=160  Identities=9%  Similarity=0.074  Sum_probs=109.6

Q ss_pred             hcHHHHHHHcCCCh--------hhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016123           35 NYSDALKTLMNLTQ--------LELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQP  105 (394)
Q Consensus        35 ~~~~~l~~~~g~s~--------~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~  105 (394)
                      .+.+.+.++.|.+.        ++.+...+...+... ..++.|++.||+|+|+++.++.++.++++.+.... .. . .
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~-~~-~-~  305 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG-DP-E-Y  305 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-Cc-c-h
Confidence            44455555666553        444554444444444 47899999999999999999999888887665542 10 0 0


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHH-hhhhhhHHHHHHHHHhhcCC------ChhHH-HH
Q 016123          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILK-GYVGLSTAIFTDLCSALFAD------DPAKF-LF  176 (394)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~-~~~glg~~i~~~i~~~~~~~------~~~~~-~~  176 (394)
                      .+.+.+++..++.|++.+..+......+.+++|+ +||++.|+.. ...++|+++.+.+...+.+.      ..++. +.
T Consensus       306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~  385 (418)
T TIGR00889       306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWL  385 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHH
Confidence            1245556677888888887766777888999995 6999999996 67789999988888877653      12444 34


Q ss_pred             HHHHHHHHHHHhhhhcccccC
Q 016123          177 MLAIVPFVVCLGAIFFLRETT  197 (394)
Q Consensus       177 ~~~~~~~~v~~~~~~~~~~~p  197 (394)
                      +.++...+.+++..+++|++.
T Consensus       386 ~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       386 FFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc
Confidence            444555556666667777553

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.12  E-value=2.4e-09  Score=105.69  Aligned_cols=156  Identities=19%  Similarity=0.093  Sum_probs=111.1

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      +....+.|.+.++.|++..+.+.+.....++.. ..++.|++.||+|+|+.+.++.+...++.......       ++.+
T Consensus       237 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~  309 (406)
T PRK11551        237 YFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA-------PSFA  309 (406)
T ss_pred             HHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-------CcHH
Confidence            344456778877889999998886666666665 47899999999999999888766666665544322       2445


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHH
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVCL  187 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~v~~  187 (394)
                      .+.+..++.|++.+...........+.+|+ +||++.|+......+|+++.+.+...+.+. ..+...+.......+.++
T Consensus       310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  389 (406)
T PRK11551        310 GMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAA  389 (406)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHH
Confidence            555555666666655556667778899985 699999999999999999999998888765 344455555555555555


Q ss_pred             hhhhcc
Q 016123          188 GAIFFL  193 (394)
Q Consensus       188 ~~~~~~  193 (394)
                      +..+.+
T Consensus       390 ~~~~~~  395 (406)
T PRK11551        390 LAALLL  395 (406)
T ss_pred             HHHHHH
Confidence            554444

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.11  E-value=3.3e-09  Score=103.16  Aligned_cols=148  Identities=14%  Similarity=0.133  Sum_probs=103.6

Q ss_pred             HHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 016123           40 LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (394)
Q Consensus        40 l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (394)
                      +++++|.+..+.+++......... ..++.|++.||+|+|+++.++.+...+.+......       ++.+.+.+..++.
T Consensus       226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  298 (375)
T TIGR00899       226 IIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD-------NSLWALLMLQLLN  298 (375)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence            467899999988885444333333 46899999999999999988877665555443322       2455555566777


Q ss_pred             hhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhhccc
Q 016123          119 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLR  194 (394)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  194 (394)
                      |++.+...........+.+|++|+.+.|+......+|..+.+.+...+.+...++..+.+..+..+++.+..+.+|
T Consensus       299 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  374 (375)
T TIGR00899       299 AIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK  374 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence            7777766666667778899988899999999888899988888887776654444444444445555555544443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.09  E-value=2.4e-09  Score=112.89  Aligned_cols=129  Identities=12%  Similarity=0.040  Sum_probs=89.9

Q ss_pred             HHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHh
Q 016123           58 KDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRN  136 (394)
Q Consensus        58 ~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~  136 (394)
                      ..++.+. .+++|++.||+|||++++++.++.+++.+++++.       ++.+.+.+.+++.|+..+..+......++++
T Consensus       604 ~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~-------~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       604 GTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG-------NSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444 6899999999999999999999988888776653       2333444445566655555556677888999


Q ss_pred             ccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhhccc
Q 016123          137 FRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLR  194 (394)
Q Consensus       137 Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  194 (394)
                      ||. +||+++|+..+...+|+++.+.+...+.... ...++++.++..+++.+..+++|
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~-~~~pf~i~a~~lll~~ll~~~LP  734 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGIT-KAAPILFASAALACGGLLALKLP  734 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhCC
Confidence            995 6999999999999999999998887766533 23333334333344444444443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00897 2A0118 polyol permease family

Probab=99.07  E-value=7.7e-09  Score=102.28  Aligned_cols=162  Identities=12%  Similarity=0.065  Sum_probs=105.1

Q ss_pred             cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHH-HHHHHHHHHHHHHHHHHHhccCCch
Q 016123           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILL-IGSLEGLVGYGAQWLVVSRKIQPLS  107 (394)
Q Consensus        30 ~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~-~g~~~~~~g~~~~~~~~~~~~~~~~  107 (394)
                      .+.+..+.|.+.+++|++..+.+++.....++.. ..++.|++.||+|+|+... .+.+..+++.......... . .++
T Consensus       238 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~-~~~  315 (402)
T TIGR00897       238 LFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH-F-GHS  315 (402)
T ss_pred             HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc-c-CCc
Confidence            3555667888878899999988876555555655 4789999999999998764 3333333333332221110 0 123


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 016123          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL  187 (394)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~  187 (394)
                      .+.+++..++.|++.+.. .+......+..|++||++.|+.+....+|+.+.+++...+++...+...+.+.++..++..
T Consensus       316 ~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~  394 (402)
T TIGR00897       316 FAVALIIAIALGIFLAGY-VPLAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSA  394 (402)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            455555666667666543 3344556678888999999999999999999999999888876444444444444444444


Q ss_pred             hhhhccc
Q 016123          188 GAIFFLR  194 (394)
Q Consensus       188 ~~~~~~~  194 (394)
                      +..+++|
T Consensus       395 ~~~~~~~  401 (402)
T TIGR00897       395 FLTAFIR  401 (402)
T ss_pred             HHHHHhc
Confidence            4444444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.05  E-value=3.7e-09  Score=106.73  Aligned_cols=159  Identities=14%  Similarity=0.033  Sum_probs=99.5

Q ss_pred             ccchhcHHH-HHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123           31 YTFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (394)
Q Consensus        31 y~~~~~~~~-l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  108 (394)
                      +....+.|. +++++|+|..+.++......++..+ .++.|++.||+|+|+.+..+.....++........ .    .+.
T Consensus       275 ~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~-~----~~~  349 (467)
T PRK09556        275 IGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH-A----TSE  349 (467)
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh-c----CcH
Confidence            345566775 4678999999998876666666654 79999999999999887765544444332222211 1    234


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhh-hHHHHHHHHHhhcC------------CChhHH
Q 016123          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGL-STAIFTDLCSALFA------------DDPAKF  174 (394)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~gl-g~~i~~~i~~~~~~------------~~~~~~  174 (394)
                      +.+++..++.|+..............+++|+ +||++.|+..+...+ |+++.+++...+.+            ...++.
T Consensus       350 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~  429 (467)
T PRK09556        350 YMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAG  429 (467)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHH
Confidence            4444455555543222112222455699996 699999999887776 66888888888877            223444


Q ss_pred             HHHHHHHHHHHHHhhhhccc
Q 016123          175 LFMLAIVPFVVCLGAIFFLR  194 (394)
Q Consensus       175 ~~~~~~~~~~v~~~~~~~~~  194 (394)
                      .+.+..+..+++.+..++++
T Consensus       430 ~f~~~~~~~~~~~~~~~~~~  449 (467)
T PRK09556        430 TFAALDIAAIGCICLMAIVA  449 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444444555555555443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.05  E-value=3.4e-09  Score=105.32  Aligned_cols=150  Identities=13%  Similarity=0.083  Sum_probs=107.0

Q ss_pred             HcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhh
Q 016123           43 LMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNS  121 (394)
Q Consensus        43 ~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g  121 (394)
                      +.+.+..+.+++.....+... ..++.|++.||+|+|+.+.++.++.+++..+.++.       ++.+.+.+.+++.|++
T Consensus       256 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~l~g~~  328 (420)
T PRK09528        256 TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-------TGPLEVSILKLLHAFE  328 (420)
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHH
Confidence            346777777776555555554 47899999999999999999999888887776543       3566666777888877


Q ss_pred             hhhhhhhHHHHHHHhccc-CCCchHHH-HHhhhhhhHHHHHHHHHhhcCCChhH-HHHHHHHHHHHHHHhhhhcccccCC
Q 016123          122 TTWMNTAVLVTCIRNFRR-NRGPVSGI-LKGYVGLSTAIFTDLCSALFADDPAK-FLFMLAIVPFVVCLGAIFFLRETTP  198 (394)
Q Consensus       122 ~g~~~~~~~~~~~~~Fp~-~RG~a~gl-~~~~~glg~~i~~~i~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~p~  198 (394)
                      .+.........+.+++|+ .|+++.+. .+...++|+.+.+++...+.+...++ .+...+++..+..++..+.+|++|+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~~  408 (420)
T PRK09528        329 VPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDRE  408 (420)
T ss_pred             HHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence            776656666788899985 58877655 45567889999999988887754344 4444555555556666666666554


Q ss_pred             C
Q 016123          199 A  199 (394)
Q Consensus       199 ~  199 (394)
                      +
T Consensus       409 ~  409 (420)
T PRK09528        409 L  409 (420)
T ss_pred             h
Confidence            4

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.05  E-value=6.2e-09  Score=99.46  Aligned_cols=152  Identities=22%  Similarity=0.223  Sum_probs=117.6

Q ss_pred             cchhcHHHHHH-HcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchH-HHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123           32 TFSNYSDALKT-LMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPI-ILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (394)
Q Consensus        32 ~~~~~~~~l~~-~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~-~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  108 (394)
                      .+..+.+.+.+ .+|.+..+.+++.....++... .++.|++.||+|+|+ .+.++.++..++.......       ++.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~  265 (352)
T cd06174         193 GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA-------PSL  265 (352)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-------ccH
Confidence            33445566544 4599999999977777777654 789999999999999 9999999998888877653       245


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 016123          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL  187 (394)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~  187 (394)
                      +.+.+..++.|++.+...+.......+.+| ++||++.|+......+|..+.+.+...+.+...++..+.+..+..+++.
T Consensus       266 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~  345 (352)
T cd06174         266 ALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAA  345 (352)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence            666677888888888888888889999999 6799999999999999999999999888876555555555544444444


Q ss_pred             hhh
Q 016123          188 GAI  190 (394)
Q Consensus       188 ~~~  190 (394)
                      +..
T Consensus       346 i~~  348 (352)
T cd06174         346 LLL  348 (352)
T ss_pred             HHh
Confidence            433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.04  E-value=2.6e-09  Score=100.85  Aligned_cols=183  Identities=13%  Similarity=0.056  Sum_probs=134.6

Q ss_pred             CCcHHHHHHHHHHHHH-hcccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHH
Q 016123           11 AGKWLGFVTAVWVQAI-SGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG   88 (394)
Q Consensus        11 ~~~w~~l~~~~~~~~~-~g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~   88 (394)
                      +..|.....+...... .+-....+...|.+.+..|.+..|.++++.....++.. +...|.+.|++|||+...+..+..
T Consensus        74 rfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t  153 (528)
T KOG0253|consen   74 RFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVT  153 (528)
T ss_pred             cchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHH
Confidence            3445544444333222 22233446677888999999999999998888889876 789999999999999888777766


Q ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123           89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus        89 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      ++.-.+...       ++++..+++++.+.|+|.|. ++...+.-.+.-|. +|++-+-.. ..+.+|......+.-...
T Consensus       154 ~v~~~is~~-------spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm  224 (528)
T KOG0253|consen  154 GVFGVISGA-------SPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVM  224 (528)
T ss_pred             HHHHHhhcC-------CCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHH
Confidence            554443221       26788889999999998886 44444444566674 788877776 777888777776666666


Q ss_pred             CCChhHHHHHHHHHHHHHHHhhhhcccccCCCCCc
Q 016123          168 ADDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTV  202 (394)
Q Consensus       168 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~  202 (394)
                      ..-.|+++++...+|........+.++++|+-+..
T Consensus       225 ~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~  259 (528)
T KOG0253|consen  225 SNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLA  259 (528)
T ss_pred             HhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhh
Confidence            66689998888889998888888999999988764

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.02  E-value=7.9e-09  Score=101.79  Aligned_cols=156  Identities=17%  Similarity=0.191  Sum_probs=106.4

Q ss_pred             hcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 016123           35 NYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (394)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~  113 (394)
                      .+.+.+.++.|++.  .++......++... .++.|++.||+|+|+.+..+..+.+++.......       ++.+.+.+
T Consensus       237 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  307 (399)
T PRK05122        237 TFITLYYAARGWDG--AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-------PSPWMALI  307 (399)
T ss_pred             HHHHHHHHHccccc--chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHH
Confidence            44555545566643  33433333444443 6899999999999999999888888887766542       24555556


Q ss_pred             HHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhhc
Q 016123          114 FLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFF  192 (394)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  192 (394)
                      ..++.|++.+..+........+.+| ++||++.|+......+|..+.+++...+.+...++..+.+.....+++++..+.
T Consensus       308 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        308 GAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            6788888887766555566678887 579999999999999999888888877766434555555555555555555555


Q ss_pred             ccccCCC
Q 016123          193 LRETTPA  199 (394)
Q Consensus       193 ~~~~p~~  199 (394)
                      +++.+++
T Consensus       388 ~~~~~~~  394 (399)
T PRK05122        388 LYRRAPR  394 (399)
T ss_pred             hcccccc
Confidence            5554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.01  E-value=6.8e-09  Score=100.42  Aligned_cols=141  Identities=13%  Similarity=-0.021  Sum_probs=100.9

Q ss_pred             hcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 016123           35 NYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (394)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~  113 (394)
                      .+.+++.+++|++..+.+++.....++... .++.|++.||+|+|+.+.++.++..++........     +.+.+.+..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  300 (377)
T TIGR00890       226 GLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP-----MLNDVLFLA  300 (377)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc-----cchhHHHHH
Confidence            344556678999988888866666666654 78999999999999999999888888877654431     012222333


Q ss_pred             HHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHH
Q 016123          114 FLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAI  180 (394)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~  180 (394)
                      ..++.|++.+..+........+.+| ++||++.|+......+|+.+.+.+...+.+...++..+.+..
T Consensus       301 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~  368 (377)
T TIGR00890       301 TVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTG  368 (377)
T ss_pred             HHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHH
Confidence            4455666666555555667889998 579999999999999999999988887776544444444433

>PRK03545 putative arabinose transporter; Provisional

Probab=98.99  E-value=2.5e-08  Score=98.15  Aligned_cols=153  Identities=12%  Similarity=0.055  Sum_probs=100.9

Q ss_pred             HHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 016123           38 DALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLC  116 (394)
Q Consensus        38 ~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~  116 (394)
                      +.+++++|.|..+.+++.....++.. ..++.|++.||+|+|+. ..+..+..++....... .     ++.+.+++..+
T Consensus       230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~-~-----~~~~~~~~~~~  302 (390)
T PRK03545        230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPA-A-----NSEWHLSVLSI  302 (390)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHH-h-----chHHHHHHHHH
Confidence            33566789999888886655555655 47899999999998764 45555554444333221 1     24566666667


Q ss_pred             HHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHH-HHhhhhcccc
Q 016123          117 MGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVV-CLGAIFFLRE  195 (394)
Q Consensus       117 l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~  195 (394)
                      +.|++.+.........+.+..|++||.++|+......+|..+.+.+...+.+....+..+...++..++ .+......++
T Consensus       303 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (390)
T PRK03545        303 FWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFRR  382 (390)
T ss_pred             HHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHccc
Confidence            777776554444555666778889999999999888899999888888887765444444444444444 4444455554


Q ss_pred             cC
Q 016123          196 TT  197 (394)
Q Consensus       196 ~p  197 (394)
                      +|
T Consensus       383 ~~  384 (390)
T PRK03545        383 FP  384 (390)
T ss_pred             cc
Confidence            44

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.97  E-value=2.8e-08  Score=99.32  Aligned_cols=166  Identities=11%  Similarity=0.023  Sum_probs=91.8

Q ss_pred             cccchhcHHHH-HHHcCCChhhhHHHHHHHHhhh-hhhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCch
Q 016123           30 NYTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLS  107 (394)
Q Consensus        30 ~y~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~  107 (394)
                      .|.+..+.|++ ++++|++..+.+.......+.. ..+++.|++.||+|+|+.+.++.++..+........... .  .+
T Consensus       259 ~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~--~~  335 (432)
T PRK10406        259 FYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQN-V--SS  335 (432)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHc-C--Cc
Confidence            45556677775 6678999988887544444443 457889999999999998887766544333222211111 1  12


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhh-hHHHHHHHHHhhcCC-ChhHHHHHHHHHHHH
Q 016123          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGL-STAIFTDLCSALFAD-DPAKFLFMLAIVPFV  184 (394)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~gl-g~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~  184 (394)
                      .+.......+.+...+..........+++||+ +||++.|+......+ .+.. ++....+++. +.+...++..++..+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~-~p~~~~~l~~~g~~~~~~~~~~~~~~  414 (432)
T PRK10406        336 PYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGS-AEYVALSLKSIGMETAFFWYVTLMAV  414 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhH-HHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            22211111222222232223344667899985 699999998764333 2333 3333334432 223334444555555


Q ss_pred             HHHhhhhcccccCCC
Q 016123          185 VCLGAIFFLRETTPA  199 (394)
Q Consensus       185 v~~~~~~~~~~~p~~  199 (394)
                      ++++..++++++++.
T Consensus       415 i~~~~~~~l~~~~~~  429 (432)
T PRK10406        415 VAFLVSLMLHRKGKG  429 (432)
T ss_pred             HHHHHHHHhhhcccc
Confidence            666666666655543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.97  E-value=1.7e-08  Score=100.12  Aligned_cols=159  Identities=14%  Similarity=0.116  Sum_probs=114.1

Q ss_pred             chhcHHHHHHH-cCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHH
Q 016123           33 FSNYSDALKTL-MNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (394)
Q Consensus        33 ~~~~~~~l~~~-~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  110 (394)
                      +..+.|.+.++ +|.+..+.+++.....++... .++.|++.||.++|+.+..+.++.+++..++...       ++.+.
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~  314 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-------PMWIL  314 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-------chHHH
Confidence            34455666444 899999988876666666654 7899999999888888888888877777665432       34555


Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHh
Q 016123          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVCLG  188 (394)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~v~~~  188 (394)
                      ..+..++.|++.+.........+.+.+|+ +||++.|+......+|..+.+.+...+.+. +....++..+++..+++++
T Consensus       315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  394 (417)
T PRK10489        315 AVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVL  394 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence            55566777777766555556778899985 599999999998889999998888887764 3344555566666666666


Q ss_pred             hhhcccccCC
Q 016123          189 AIFFLRETTP  198 (394)
Q Consensus       189 ~~~~~~~~p~  198 (394)
                      ....+++.++
T Consensus       395 ~~~~~~~~~~  404 (417)
T PRK10489        395 LLLVLGELRR  404 (417)
T ss_pred             HHHhcccccc
Confidence            6666555443

>PRK09952 shikimate transporter; Provisional

Probab=98.96  E-value=4.3e-08  Score=98.22  Aligned_cols=162  Identities=9%  Similarity=0.077  Sum_probs=101.1

Q ss_pred             ccchhcHHHH-HHHcCCChhhhHHHHHHHHhhh-hhhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123           31 YTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (394)
Q Consensus        31 y~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  108 (394)
                      |....+.|.+ ++++|.+..+...+.....+.. +..++.|++.||+|+|+++..+.++..++...+......   ..+.
T Consensus       267 ~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~---~~~~  343 (438)
T PRK09952        267 YIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA---QSIF  343 (438)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc---CChH
Confidence            4444455554 6778998876554433333333 346889999999999999988877665544433322111   1123


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHh-hhhhhHHHHHHHHHhhcCC--ChhHHHHHHHHHHHH
Q 016123          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKG-YVGLSTAIFTDLCSALFAD--DPAKFLFMLAIVPFV  184 (394)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~-~~glg~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~  184 (394)
                      +.+.+..++.+++.+...........+.||+ +|+.+.|+... +..+|+.+.+.+...+++.  +.+...+...++..+
T Consensus       344 ~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~  423 (438)
T PRK09952        344 WIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCL  423 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            3333344555666665555566788899995 69999998654 4457888888888887652  234455555555566


Q ss_pred             HHHhhhhcccc
Q 016123          185 VCLGAIFFLRE  195 (394)
Q Consensus       185 v~~~~~~~~~~  195 (394)
                      ++.++.+.+|+
T Consensus       424 i~~v~~~~~~~  434 (438)
T PRK09952        424 ISAMTALLMKD  434 (438)
T ss_pred             HHHHHHHHccc
Confidence            66666655543

>PRK03699 putative transporter; Provisional

Probab=98.95  E-value=1.8e-08  Score=99.34  Aligned_cols=157  Identities=10%  Similarity=-0.038  Sum_probs=104.3

Q ss_pred             ccchhcHHHH-HHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123           31 YTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (394)
Q Consensus        31 y~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  108 (394)
                      +.+..+.|.+ ++++|+|..+.+.+.+...++... .++.|++.||+++|+.+.....+..++..+....       ++.
T Consensus       222 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-------~~~  294 (394)
T PRK03699        222 LTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT-------DDP  294 (394)
T ss_pred             HHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc-------CCc
Confidence            4555667766 577899999998866665566554 7899999999999999888777666655444321       233


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 016123          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG  188 (394)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~  188 (394)
                      +.+.+..++.|++.+..++.......+..|++++...|.......+|+.+.+.+...+.+....+..++......+++.+
T Consensus       295 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        295 SHLLYAILGLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV  374 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence            33444455666666655555555566666878888999998888899999999988887653344443333333444433


Q ss_pred             hhhccc
Q 016123          189 AIFFLR  194 (394)
Q Consensus       189 ~~~~~~  194 (394)
                      ...++.
T Consensus       375 ~~~~~~  380 (394)
T PRK03699        375 MCILLG  380 (394)
T ss_pred             HHHHHH
Confidence            333333

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.94  E-value=4.8e-08  Score=95.90  Aligned_cols=143  Identities=10%  Similarity=0.085  Sum_probs=110.2

Q ss_pred             cchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHH
Q 016123           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (394)
Q Consensus        32 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  110 (394)
                      .+..+.|++.+++|.+..+.+.......+.... .++.|++.||+|+|+++.++.+...+.+..+.+.       ++.+.
T Consensus       223 ~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------~~~~~  295 (382)
T TIGR00902       223 AYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-------EAFPL  295 (382)
T ss_pred             HHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-------hhHHH
Confidence            334456666677999999999865555555554 7899999999999999999999999998877653       46777


Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHH-hhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHH
Q 016123          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILK-GYVGLSTAIFTDLCSALFADDPAKFLFMLAIVP  182 (394)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~-~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~  182 (394)
                      +++..++.|+..+....+....+.+. | ++|+++.++.. ...++|..+.+.+...+.+......++..+++.
T Consensus       296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~  368 (382)
T TIGR00902       296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIA  368 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            78788999999998888888888887 7 47999999975 467899999988888887654444444444433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.93  E-value=6.3e-08  Score=94.40  Aligned_cols=136  Identities=16%  Similarity=0.135  Sum_probs=96.3

Q ss_pred             cchhcHHH-HHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           32 TFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        32 ~~~~~~~~-l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      .+..+.|. +++++|+++.+.+++.....++... .++.|++.||+|+|+.+..+..+..++..++........  .+.+
T Consensus       224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  301 (385)
T TIGR00710       224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGL--GSWA  301 (385)
T ss_pred             HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcc--chHH
Confidence            33444454 4668999999998876666666654 789999999999999999988888777766554321110  1233


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCC
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADD  170 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~  170 (394)
                      .+....++.|++.+..+........+.+|++||.+.++.......++.+.+++.. ...++
T Consensus       302 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~  361 (385)
T TIGR00710       302 MIIGPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVS-LIHGN  361 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHH-hcccc
Confidence            3344456677877777766777777888989999999988877777777777766 44433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.93  E-value=8e-08  Score=94.96  Aligned_cols=162  Identities=14%  Similarity=0.084  Sum_probs=107.6

Q ss_pred             cchhcHHHH-HHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           32 TFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        32 ~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      .+..+.|.+ ++++|++..+.++......++... .++.|++.||+|+|+.+.++.++..++..+........  ..+.+
T Consensus       233 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~  310 (406)
T PRK15402        233 AWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVIS--SHAYL  310 (406)
T ss_pred             HHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcc--cccHH
Confidence            444445554 677999999888755544455544 78999999999999999999888888877765532111  12344


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH-h
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL-G  188 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~-~  188 (394)
                      .+.+..++.|+|.+...+..........|++||++.++......+|..+.+.+...+.+...+..+.+..++..++.+ .
T Consensus       311 ~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  390 (406)
T PRK15402        311 WLTAGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLL  390 (406)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHH
Confidence            455566777788776554444444344457899999999999999999999888888776444444444443333333 3


Q ss_pred             hhhcccc
Q 016123          189 AIFFLRE  195 (394)
Q Consensus       189 ~~~~~~~  195 (394)
                      ...++|+
T Consensus       391 ~~~~~~~  397 (406)
T PRK15402        391 VRIFLKD  397 (406)
T ss_pred             HHHHhcc
Confidence            3344444

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.93  E-value=2.2e-08  Score=99.99  Aligned_cols=166  Identities=15%  Similarity=0.076  Sum_probs=105.2

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCC----
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQP----  105 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~----  105 (394)
                      +....+.|.+.+++|++..+.++......++.. ..++.|++.||+|+|+.+.++.++..++.+............    
T Consensus       301 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (481)
T TIGR00879       301 NAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS  380 (481)
T ss_pred             eehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc
Confidence            344567788888899999777776655555554 478999999999999999999888887777665321111100    


Q ss_pred             chHHHHHH-HHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHH-HHHHHHHH
Q 016123          106 LSYWQMCV-FLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKF-LFMLAIVP  182 (394)
Q Consensus       106 ~~~~~l~~-~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~-~~~~~~~~  182 (394)
                      .+...+.. ..+..+.+.+. .......+.+.+|+ +||++.|+......+|+++.+.+...+.+...+.. +.+.+++.
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~  459 (481)
T TIGR00879       381 SGNVAIVFILLFIAFFAMGW-GPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLN  459 (481)
T ss_pred             hhHHHHHHHHHHHHHHHccc-cCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHH
Confidence            02222222 22222222222 13334556899985 69999999999999999999998888776433333 34444444


Q ss_pred             HHHHHhhhhcccccC
Q 016123          183 FVVCLGAIFFLRETT  197 (394)
Q Consensus       183 ~~v~~~~~~~~~~~p  197 (394)
                      .+.+++..++.|+.+
T Consensus       460 ~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       460 VLGLIFVYFFLPETK  474 (481)
T ss_pred             HHHHHHHheecccCC
Confidence            444444445555433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09669 putative symporter YagG; Provisional

Probab=98.92  E-value=1.5e-08  Score=101.56  Aligned_cols=124  Identities=13%  Similarity=-0.054  Sum_probs=80.3

Q ss_pred             HHHHHHcCCChhhhHHHHHHHHhhh-hhhhhhHhhhhc----cCch-HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHH
Q 016123           38 DALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDR----IPAP-IILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM  111 (394)
Q Consensus        38 ~~l~~~~g~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr----~G~r-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l  111 (394)
                      ..+.+++|+|.++++.+....-+.- +..|+.|+++||    +||| +.++.+.+..++...+..... ........+.+
T Consensus        34 ~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p-~~~~~~~~~~~  112 (444)
T PRK09669         34 YFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTP-DFGATGKIIYA  112 (444)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCC-CCCcchHHHHH
Confidence            3468899999999999655555544 558999999999    6774 556577777777765543321 10001123344


Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHHhcc--cCCCchHHHHHhhhhhhHHHHHHH
Q 016123          112 CVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDL  162 (394)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gl~~~~~glg~~i~~~i  162 (394)
                      ++..++.+.+..+...+..+...++.+  ++|+...+....+..+|+.+.+.+
T Consensus       113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~  165 (444)
T PRK09669        113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVI  165 (444)
T ss_pred             HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555555555666677778875  569988888877777776665543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.90  E-value=3e-08  Score=96.53  Aligned_cols=136  Identities=13%  Similarity=-0.038  Sum_probs=91.7

Q ss_pred             cccchhcHHHH-HHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHH-HHHHHHHHhccCCc
Q 016123           30 NYTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGY-GAQWLVVSRKIQPL  106 (394)
Q Consensus        30 ~y~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~-~~~~~~~~~~~~~~  106 (394)
                      .+.+..+.|.+ ++++|.+..+.+.......++.. ..++.|++.||+|+|+.+..+..+..+.. ...... ..   .+
T Consensus       235 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~---~~  310 (394)
T TIGR00883       235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL-LD---SG  310 (394)
T ss_pred             HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-hc---CC
Confidence            34455566665 57789999888886655555555 47899999999999998876655444332 222111 11   12


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHH-HhhhhhhHHHHHHHHHhhcCC
Q 016123          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGIL-KGYVGLSTAIFTDLCSALFAD  169 (394)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~-~~~~glg~~i~~~i~~~~~~~  169 (394)
                      +.+.+....++.|++.+..+......+.+.+|+ +|+++.|+. ..+..+|+.+.+.+...+.+.
T Consensus       311 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~  375 (394)
T TIGR00883       311 SFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM  375 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH
Confidence            445555556667777777777778888999995 699999985 444556777777777776653

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.89  E-value=5.4e-08  Score=98.16  Aligned_cols=162  Identities=12%  Similarity=0.016  Sum_probs=100.4

Q ss_pred             hhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 016123           34 SNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (394)
Q Consensus        34 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~  112 (394)
                      ..+.|.+.++.|.+..+..+......+... ..++.|++.||+|+|++++.+.++.+++.+.+........  .+.+. .
T Consensus       291 ~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~--~~~~~-~  367 (479)
T PRK10077        291 LYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA--PGIVA-L  367 (479)
T ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCc--ccHHH-H
Confidence            456688888899887766655444444444 4789999999999999999999999888877764322111  11221 1


Q ss_pred             HHHHHHhhhhhhhh-hhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhc------CCChhH-HHHHHHHHHH
Q 016123          113 VFLCMGGNSTTWMN-TAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF------ADDPAK-FLFMLAIVPF  183 (394)
Q Consensus       113 ~~~~l~G~g~g~~~-~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~------~~~~~~-~~~~~~~~~~  183 (394)
                      ...++.+.+.+... +.....+++.|| ++||.++|+..+...+|+.+.+.+...+.      +...+. .+.+.++...
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (479)
T PRK10077        368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV  447 (479)
T ss_pred             HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHH
Confidence            22223333333222 345677889999 46999999999988888888766654433      222222 3334444444


Q ss_pred             HHHHhhhhcccccCC
Q 016123          184 VVCLGAIFFLRETTP  198 (394)
Q Consensus       184 ~v~~~~~~~~~~~p~  198 (394)
                      +..++..++.|+..+
T Consensus       448 ~~~~~~~~~~~e~~~  462 (479)
T PRK10077        448 LAALFMWKFVPETKG  462 (479)
T ss_pred             HHHHHHHhccccCCC
Confidence            444444445555443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.89  E-value=9.1e-09  Score=97.72  Aligned_cols=132  Identities=14%  Similarity=0.059  Sum_probs=97.4

Q ss_pred             cccccchhcHH-HHHHHcCCC----hhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHh
Q 016123           28 GNNYTFSNYSD-ALKTLMNLT----QLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSR  101 (394)
Q Consensus        28 g~~y~~~~~~~-~l~~~~g~s----~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~  101 (394)
                      +..|.+.++.- +++...+-+    ..-.+.+.+.+.++..+ ++..|.+.||+|||+++++|.+..++.+.+.+.+   
T Consensus        42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S---  118 (451)
T KOG2615|consen   42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS---  118 (451)
T ss_pred             cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH---
Confidence            44455554432 233333333    33445566667777765 8999999999999999999999999988877654   


Q ss_pred             ccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          102 KIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       102 ~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                          .++..+.+.|++.|+.-|-. ....+++++.++ |+|+++++...+.+++|-.+.|.+...+-
T Consensus       119 ----~~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla  180 (451)
T KOG2615|consen  119 ----RNFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLA  180 (451)
T ss_pred             ----HHHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHH
Confidence                35644445699999988865 456788899997 57999999999999999888877766543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.89  E-value=1.6e-08  Score=100.97  Aligned_cols=130  Identities=13%  Similarity=0.014  Sum_probs=88.1

Q ss_pred             HHHHHHHcCCChhhhHHHHHHHHhhh-hhhhhhHhhhh----ccCchHHHH-HHHHHHHHHHHHHHHH-HHhccCCchHH
Q 016123           37 SDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASD----RIPAPIILL-IGSLEGLVGYGAQWLV-VSRKIQPLSYW  109 (394)
Q Consensus        37 ~~~l~~~~g~s~~~~~~~~~~~~~~~-~~~~~~G~l~D----r~G~r~~~~-~g~~~~~~g~~~~~~~-~~~~~~~~~~~  109 (394)
                      .+.+.+.+|+++..++.+....-+.. +..|+.|.++|    |+||||..+ +|.+..++++.++... ..+........
T Consensus        25 ~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~  104 (428)
T PF13347_consen   25 LYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLV  104 (428)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHH
Confidence            34468888999999999655555444 45899999999    899877655 6778888888877643 11100001122


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcc--cCCCchHHHHHhhhhhhHHHHHHHHHhh
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSAL  166 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gl~~~~~glg~~i~~~i~~~~  166 (394)
                      .+.+..++..++......+..+...+..+  ++|.+..+....+..+|+.+.+.+...+
T Consensus       105 ~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l  163 (428)
T PF13347_consen  105 WLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPIL  163 (428)
T ss_pred             HHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence            23344455567777777777777888886  4699999998888888776555554443

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.88  E-value=9e-08  Score=97.35  Aligned_cols=157  Identities=11%  Similarity=0.108  Sum_probs=103.8

Q ss_pred             HHHHHHHcCCChhhhHHHH-HHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHH
Q 016123           37 SDALKTLMNLTQLELNNLS-VVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVF  114 (394)
Q Consensus        37 ~~~l~~~~g~s~~~~~~~~-~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~  114 (394)
                      .|.+.+++|++..+.+++. ....++.+. .+++|++.||+|+|+.+.++.++.+++...+......   .++.+.+...
T Consensus       246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~---~~~~~~l~~~  322 (491)
T PRK11010        246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT---DKNLYSMGAA  322 (491)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHH
Confidence            3445678999999999864 455555554 7899999999999998887776655544333221111   1234333333


Q ss_pred             HHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhhcc
Q 016123          115 LCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFL  193 (394)
Q Consensus       115 ~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  193 (394)
                      .++..+..++.+.+......+..|+ .+++..|+.++..++|..+.+++...+.+...++..+.+..+..+.+++....+
T Consensus       323 ~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        323 VFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444456677788886 589999999999999999998888887775556656666666666666666666


Q ss_pred             ccc
Q 016123          194 RET  196 (394)
Q Consensus       194 ~~~  196 (394)
                      |+.
T Consensus       403 ~~~  405 (491)
T PRK11010        403 RQT  405 (491)
T ss_pred             Hhc
Confidence            543

>PRK10504 putative transporter; Provisional

Probab=98.87  E-value=8.9e-08  Score=96.57  Aligned_cols=130  Identities=11%  Similarity=0.053  Sum_probs=93.5

Q ss_pred             hcHHHH-HHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 016123           35 NYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (394)
Q Consensus        35 ~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~  112 (394)
                      .+.|.+ +..+|.+..+.++......++... .++.|++.||+|+|+++.++.++.+++..++.+...    ..+.+.+.
T Consensus       282 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  357 (471)
T PRK10504        282 FMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL----LGWYYLLP  357 (471)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc----cccHHHHH
Confidence            345555 446899999888866655555554 689999999999999999998888877666544211    12333333


Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          113 VFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      +..++.|++.+..+........+.+|+ .||.+.|+......+|..+.+.+...+++
T Consensus       358 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        358 FVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566777777766667777788885 69999999998888888887777666543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.85  E-value=1.1e-07  Score=93.88  Aligned_cols=151  Identities=11%  Similarity=0.048  Sum_probs=99.9

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      +....+.|++.+++|++..+.+.......++... .++.|++.||+|+|+.+.++..+..++...+...  .    .+..
T Consensus       222 ~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~--~----~~~~  295 (393)
T PRK09705        222 ASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL--P----LQLP  295 (393)
T ss_pred             HHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc--c----chHH
Confidence            3445567777667899999998866666666654 7899999999999999999887777776654321  1    1111


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcc--cCCCchHHHHHhhhhhhHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHH
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVC  186 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~v~  186 (394)
                      .+.  .++.|++.+..+........+.++  ++||++.|+......+++.+.+.+...+.+. +.....+.++.+..++.
T Consensus       296 ~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~  373 (393)
T PRK09705        296 VLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGL  373 (393)
T ss_pred             HHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            121  234566666655555555556664  4699999999888888888888888877764 22344444443333333


Q ss_pred             Hhh
Q 016123          187 LGA  189 (394)
Q Consensus       187 ~~~  189 (394)
                      .++
T Consensus       374 ~~~  376 (393)
T PRK09705        374 MII  376 (393)
T ss_pred             HHH
Confidence            333

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.85  E-value=1e-07  Score=94.67  Aligned_cols=134  Identities=15%  Similarity=0.086  Sum_probs=86.6

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      +....+.|.+.++.|.+..+.+.+.....++... .++.|++.||+|+|+.+..+.++..++....... ..    .+.+
T Consensus       248 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~  322 (426)
T PRK12307        248 WPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI-PQ----DNYL  322 (426)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-cc----ccHH
Confidence            3444566777677899988888765555555554 7899999999999999988887766655443322 11    1222


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~  169 (394)
                      .+....+..+.+...........+.+.+|+ +||+++|+......+|+.+.+.+...+.+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~  383 (426)
T PRK12307        323 LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT  383 (426)
T ss_pred             HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence            111111111111111112334567899985 699999999988889988888887776654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.83  E-value=2.2e-07  Score=90.25  Aligned_cols=163  Identities=12%  Similarity=0.007  Sum_probs=120.3

Q ss_pred             HhcccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccC
Q 016123           26 ISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ  104 (394)
Q Consensus        26 ~~g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~  104 (394)
                      ..|..-.|++..|.+++..|+|.++++++...+.++... ..++|++.|| ++|+.+.....+..+.+..+.+..     
T Consensus       224 ~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~-----  297 (394)
T COG2814         224 MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG-----  297 (394)
T ss_pred             HcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc-----
Confidence            345555667777888999999999999977777777765 7999999999 999999988888888777765431     


Q ss_pred             CchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 016123          105 PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV  184 (394)
Q Consensus       105 ~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~  184 (394)
                       .+.+...+..++.|++.+........-.++..|+.++.+.++..+.+.+|.++.+.+....++........+.+.+..+
T Consensus       298 -~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~  376 (394)
T COG2814         298 -ASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLL  376 (394)
T ss_pred             -chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence             2344444444555555554444444455565578999999999999999999999998888887666667777776666


Q ss_pred             HHHhhhhcccc
Q 016123          185 VCLGAIFFLRE  195 (394)
Q Consensus       185 v~~~~~~~~~~  195 (394)
                      .+++..+..+.
T Consensus       377 ~a~~~~~~~~~  387 (394)
T COG2814         377 LALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHh
Confidence            66666555443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.83  E-value=8.1e-08  Score=97.90  Aligned_cols=135  Identities=12%  Similarity=-0.021  Sum_probs=84.8

Q ss_pred             cccchhcHHHHHHHcCCChhhhHH------------HHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHH
Q 016123           30 NYTFSNYSDALKTLMNLTQLELNN------------LSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQW   96 (394)
Q Consensus        30 ~y~~~~~~~~l~~~~g~s~~~~~~------------~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~   96 (394)
                      .|+...+.|.+.++.|++..+.+.            ......++.+. .++.+++.||+|||++++++.++.+++..+..
T Consensus       304 ~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~  383 (502)
T TIGR00887       304 FYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLG  383 (502)
T ss_pred             HHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Confidence            456666778887788887543211            11222223333 57889999999999999998888877766655


Q ss_pred             HHHHhccCCchHHHHHHHHHHHhh-hhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123           97 LVVSRKIQPLSYWQMCVFLCMGGN-STTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus        97 ~~~~~~~~~~~~~~l~~~~~l~G~-g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      ..... .+ .. ..+..+.+...+ +.+. .........|.||. .|+++.|+..+...+|+++.+.+...+++
T Consensus       384 ~~~~~-~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~  453 (502)
T TIGR00887       384 FAYNH-LS-TH-GFLAIYVLAQFFANFGP-NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQ  453 (502)
T ss_pred             HHHHh-cc-hh-HHHHHHHHHHHHHhcCC-CchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhc
Confidence            43211 00 11 111111111111 1121 22344556899995 59999999999999999999998888776

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.82  E-value=3e-07  Score=93.76  Aligned_cols=126  Identities=16%  Similarity=0.128  Sum_probs=96.3

Q ss_pred             HHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 016123           40 LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (394)
Q Consensus        40 l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (394)
                      +..+..-|+..++++..+..+-.+ +++++|.+.||+.+|++++.+-++.++............  ..+.|.++++.++.
T Consensus        36 lv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~--~~~~~~Ll~~~fl~  113 (524)
T PF05977_consen   36 LVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFG--LLSPWLLLILTFLL  113 (524)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhC--cCCHHHHHHHHHHH
Confidence            444556678888887777777765 599999999999999999999988776555544332211  13678888888999


Q ss_pred             hhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          119 GNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      |++.++..++..+.+.+..|+ +...|+++......++..+++.+...++
T Consensus       114 g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv  163 (524)
T PF05977_consen  114 GIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV  163 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            999998888888889999996 6888999988888887777776655543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.81  E-value=9.6e-08  Score=95.47  Aligned_cols=164  Identities=13%  Similarity=0.084  Sum_probs=98.6

Q ss_pred             hcccccchhcHHHH-HHHcCCChhhhHHHHHH-HHhhhhhhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccC
Q 016123           27 SGNNYTFSNYSDAL-KTLMNLTQLELNNLSVV-KDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ  104 (394)
Q Consensus        27 ~g~~y~~~~~~~~l-~~~~g~s~~~~~~~~~~-~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~  104 (394)
                      .|...+++.+.|.+ ++++  +.......... ..++.+..|++|++.||+|+|+++.++.+...++........... +
T Consensus       265 FG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~-~  341 (462)
T PRK15034        265 FGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT-G  341 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc-c
Confidence            34444556666665 4444  33322222222 233344589999999999999999999987777665443332111 1


Q ss_pred             CchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc----------------------CCCchHHHHHhhhhhhHHHHHHH
Q 016123          105 PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR----------------------NRGPVSGILKGYVGLSTAIFTDL  162 (394)
Q Consensus       105 ~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~----------------------~RG~a~gl~~~~~glg~~i~~~i  162 (394)
                      +.+++.+.+..+...+..|..+.+..+++.+.||+                      +-|.++|+..+.-++|+++.|.+
T Consensus       342 ~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~  421 (462)
T PRK15034        342 SGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQA  421 (462)
T ss_pred             ccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHH
Confidence            12344444333333344455555667888898984                      45788999999999999999988


Q ss_pred             HHhhcCC--ChhHHHHHHHHHHHHHHHhhhhcc
Q 016123          163 CSALFAD--DPAKFLFMLAIVPFVVCLGAIFFL  193 (394)
Q Consensus       163 ~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~  193 (394)
                      +....+.  .....+....+..+++.++.++..
T Consensus       422 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        422 FGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            8877643  223334444444445555555444

>PRK12382 putative transporter; Provisional

Probab=98.81  E-value=7.3e-08  Score=94.75  Aligned_cols=146  Identities=14%  Similarity=0.148  Sum_probs=100.5

Q ss_pred             hhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 016123           34 SNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (394)
Q Consensus        34 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~  112 (394)
                      ..+.+.+.++.|++..  +.......++.. ..++.|++.||+|+|+.+..+..+.++++.+....       ++.+.+.
T Consensus       236 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  306 (392)
T PRK12382        236 GTFVSLYFASKGWAMA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-------PTAWVAL  306 (392)
T ss_pred             HHHHHHHHHhcCCchh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-------ccHHHHH
Confidence            3455555556677643  332233334444 47899999999999999999998888887765442       2455555


Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 016123          113 VFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG  188 (394)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~  188 (394)
                      +..++.|++.+..+........+.+| ++||++.|+......+|+.+.+++...+.+...++..+.+.....++..+
T Consensus       307 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  383 (392)
T PRK12382        307 AGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGII  383 (392)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            66777888877766555566778887 67999999999999999999999888887654444444444333344333

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.81  E-value=2.2e-07  Score=91.17  Aligned_cols=132  Identities=15%  Similarity=0.068  Sum_probs=97.8

Q ss_pred             hhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 016123           34 SNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (394)
Q Consensus        34 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~  112 (394)
                      ..+.+.+.++.|++..+.+.+.....++... .++.|++.||+|+|+.+.++.+..++++++....       ++.+.+.
T Consensus       225 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~  297 (382)
T PRK11128        225 YGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-------TALPWLI  297 (382)
T ss_pred             HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHH
Confidence            3455666567999998888865555555544 7899999999999999999998888887765543       3566667


Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHH-hhhhhhHHHHHHHHHhhcCCChh
Q 016123          113 VFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILK-GYVGLSTAIFTDLCSALFADDPA  172 (394)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~-~~~glg~~i~~~i~~~~~~~~~~  172 (394)
                      +..++.|++.+..+........+..|++++++.++.. ...++|..+.+.+...+.+....
T Consensus       298 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~  358 (382)
T PRK11128        298 VIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA  358 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            7788888888877666666677765667888888875 45667777888777777765333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.80  E-value=1.7e-07  Score=92.25  Aligned_cols=131  Identities=14%  Similarity=0.069  Sum_probs=89.5

Q ss_pred             Hhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhc
Q 016123           59 DIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNF  137 (394)
Q Consensus        59 ~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~F  137 (394)
                      .++.. ..++.|++.||+|+|+++..+.+...++.+.....       ++.+.+++..++.|++.+..++.....+.+..
T Consensus       268 ~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  340 (408)
T PRK09874        268 GVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-------QTPLQLGILRFLLGAADGALLPAVQTLLVYNS  340 (408)
T ss_pred             HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC
Confidence            34443 46789999999999999999888777766654432       24566666777888888876666666666667


Q ss_pred             c-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh-hhhccccc
Q 016123          138 R-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG-AIFFLRET  196 (394)
Q Consensus       138 p-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~  196 (394)
                      | ++||++.|+......+|..+.+.+...+.+...++..+.......+++.+ ..+..|++
T Consensus       341 ~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~  401 (408)
T PRK09874        341 SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRRR  401 (408)
T ss_pred             CcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7 56999999999989999999888877776654444444444433333333 33333333

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.80  E-value=1.5e-07  Score=95.52  Aligned_cols=134  Identities=11%  Similarity=0.043  Sum_probs=91.0

Q ss_pred             chhcHHHHH-HHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHH
Q 016123           33 FSNYSDALK-TLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (394)
Q Consensus        33 ~~~~~~~l~-~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  110 (394)
                      ...+.|.+. +++|++..+.+++.+...++... .++.|++.||+|+|+++.++.++..++.+.....  .   ..+.+.
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~  368 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI--G---GANVWV  368 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--c---ccHHHH
Confidence            345667664 68999999999977766666654 7899999999999999988877666555433221  1   123333


Q ss_pred             HHHHHHHH-hhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChh
Q 016123          111 MCVFLCMG-GNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPA  172 (394)
Q Consensus       111 l~~~~~l~-G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~  172 (394)
                      +.+..++. +.+.+. .......+.+.+|+ +||+++|+..+...+|+.+.+.+...+.+...+
T Consensus       369 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~  431 (496)
T PRK03893        369 LGLLLFFQQMLGQGI-SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDL  431 (496)
T ss_pred             HHHHHHHHHHHhccc-chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCCh
Confidence            33332322 222222 23444567888984 799999999998899999988887777665333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.76  E-value=2.6e-07  Score=90.56  Aligned_cols=140  Identities=9%  Similarity=0.037  Sum_probs=94.5

Q ss_pred             cHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHH
Q 016123           36 YSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVF  114 (394)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~  114 (394)
                      +.|.+.++.|.+..+.+++.....++.. ..++.|++.||+|+|+++..+.++..++..... .        .. .....
T Consensus       222 ~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~--------~~-~~~~~  291 (381)
T PRK03633        222 LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-S--------QA-AMAPA  291 (381)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-h--------hH-HHHHH
Confidence            4576767789999888886555555554 478899999999999999988888777665432 1        11 11223


Q ss_pred             HHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016123          115 LCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVV  185 (394)
Q Consensus       115 ~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v  185 (394)
                      .++.|++....++.....+.+..|+ +++.+.+.....+++|+++.+.+...+.+...++..+.+.....++
T Consensus       292 ~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~  363 (381)
T PRK03633        292 LFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFI  363 (381)
T ss_pred             HHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            3444554444455666667788875 6777888888888999999999988887654444444433333333

>PRK15075 citrate-proton symporter; Provisional

Probab=98.76  E-value=3.8e-07  Score=91.21  Aligned_cols=135  Identities=16%  Similarity=0.134  Sum_probs=83.5

Q ss_pred             cccchhcHHHH-HHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHH-HHHHHHHHHHhccCCc
Q 016123           30 NYTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLV-GYGAQWLVVSRKIQPL  106 (394)
Q Consensus        30 ~y~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~-g~~~~~~~~~~~~~~~  106 (394)
                      .+....+.|.+ ++.+|++..+.+++.....++.. ..++.|++.||+|+|++..++.++..+ ++....... .   ++
T Consensus       254 ~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~---~~  329 (434)
T PRK15075        254 FYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV-A---AP  329 (434)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-c---CC
Confidence            34455667776 55689999888877666666655 478999999999999998876554432 221111111 1   12


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHh-hhhhhHHHHHHHHHhhcC
Q 016123          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKG-YVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~-~~glg~~i~~~i~~~~~~  168 (394)
                      +...+....++.+++.+...........+.+|+ +||.+.|+... +..+++.+.+.+...+.+
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        330 SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence            232232333334444444444445677899985 69999998643 444456777777766655

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.75  E-value=6.4e-09  Score=95.01  Aligned_cols=120  Identities=15%  Similarity=0.094  Sum_probs=91.5

Q ss_pred             hcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhc-cCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 016123           35 NYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (394)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr-~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~  112 (394)
                      ....+++.+.+++.++..++.+....-.++ .+++|+++|| +|.|.-.++=.....+|.++++.-   .+ .+.+|.+.
T Consensus        65 alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~G---gi-~~aFw~M~  140 (459)
T KOG4686|consen   65 ALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAG---GI-SHAFWTML  140 (459)
T ss_pred             hhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhc---hH-HHHHHHHH
Confidence            344556777778888887766666666654 7899999998 798887777777777888877642   22 14689888


Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHH
Q 016123          113 VFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAI  158 (394)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i  158 (394)
                      +.|++.|+|.-..-++-.+++..||+ |+-+.+.|+....--+|+.+
T Consensus       141 ~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gstv  187 (459)
T KOG4686|consen  141 AGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTV  187 (459)
T ss_pred             hhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhcee
Confidence            99999999875544667788889998 67999999998887888754

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.74  E-value=2.6e-07  Score=92.92  Aligned_cols=165  Identities=10%  Similarity=-0.019  Sum_probs=90.5

Q ss_pred             cccchhcHHHH-HHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhcc--CchHHH-HHHHHHHHHHHHHHHHHHHhccC
Q 016123           30 NYTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRI--PAPIIL-LIGSLEGLVGYGAQWLVVSRKIQ  104 (394)
Q Consensus        30 ~y~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~--G~r~~~-~~g~~~~~~g~~~~~~~~~~~~~  104 (394)
                      .|....+.|.+ ++++|++..+.+.+.....++... .++.|++.||+  |+|+.. .....+..++...+... .  . 
T Consensus       269 ~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~-~--~-  344 (452)
T PRK11273        269 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN-P--A-  344 (452)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh-c--c-
Confidence            34555677775 566899998888766555566554 78999999999  555432 22223333333332221 0  0 


Q ss_pred             CchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHH-HHHHHhhcCCChhHHHHHHHHHH
Q 016123          105 PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIF-TDLCSALFADDPAKFLFMLAIVP  182 (394)
Q Consensus       105 ~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~-~~i~~~~~~~~~~~~~~~~~~~~  182 (394)
                       .+.+...+..++.|.+.............+.+|+ +||+++|+......+|+.+. +.+...+.+...++..+.+....
T Consensus       345 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~  423 (452)
T PRK11273        345 -GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG  423 (452)
T ss_pred             -cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHH
Confidence             1222222222333332211111222345688985 69999999988777777664 56666665543344444344444


Q ss_pred             HHHHHhhhhcccccCCC
Q 016123          183 FVVCLGAIFFLRETTPA  199 (394)
Q Consensus       183 ~~v~~~~~~~~~~~p~~  199 (394)
                      .+++++....+...+++
T Consensus       424 ~~~~~~~~~~~~~~~~~  440 (452)
T PRK11273        424 SILAVILLIVVMIGEKR  440 (452)
T ss_pred             HHHHHHHHHHHhccccc
Confidence            45555555544444443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.74  E-value=2e-07  Score=94.90  Aligned_cols=133  Identities=14%  Similarity=0.118  Sum_probs=102.3

Q ss_pred             cchhcHHH-HHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           32 TFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        32 ~~~~~~~~-l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      .+..+.|. +++.+|+|..+.+.......++.. .+++.|++.||+|+|+.+..|.++..++...+...  ..  .++.+
T Consensus       277 ~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~--~~--~~~~~  352 (495)
T PRK14995        277 GFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT--DF--STQQW  352 (495)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh--cC--CCchH
Confidence            33344554 577799999999997666666665 48999999999999999999998888887765543  11  12445


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      ......++.|+|.|....+......+..| +++|.+.++......+|+.+.+.+...+++
T Consensus       353 ~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        353 QAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566788899988877777777778888 579999999999999999988888777654

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.73  E-value=1.1e-07  Score=91.67  Aligned_cols=161  Identities=18%  Similarity=0.136  Sum_probs=110.3

Q ss_pred             HhcccccchhcHHH-HHHHcCCChhhhHHHHHHHH-hhhhhhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016123           26 ISGNNYTFSNYSDA-LKTLMNLTQLELNNLSVVKD-IGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKI  103 (394)
Q Consensus        26 ~~g~~y~~~~~~~~-l~~~~g~s~~~~~~~~~~~~-~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~  103 (394)
                      +.|..-.++.+.|. ++++|+.+..+.+.+..... ++.+.=|.+|+++||+|.+|++.+....+.++..+.++......
T Consensus       230 tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~  309 (417)
T COG2223         230 TFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFG  309 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccc
Confidence            44555567777776 48899999999988544444 44456799999999999999999999988888777665432111


Q ss_pred             CCchHHHHH----HHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCC--ChhHHHHH
Q 016123          104 QPLSYWQMC----VFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD--DPAKFLFM  177 (394)
Q Consensus       104 ~~~~~~~l~----~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~--~~~~~~~~  177 (394)
                      ...+.+...    ...+..|+|.|.    ..+.+...||++-|.+.|+..+.-++|++..+.......+.  +....+.+
T Consensus       310 ~~~~~~~~~~~~l~l~~~~G~GnGs----vfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~  385 (417)
T COG2223         310 HGGSFVVFVAVFLALFVFAGLGNGS----VFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFML  385 (417)
T ss_pred             cCcchHHHHHHHHHHHHHhccCcch----heeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHH
Confidence            001222222    235556666664    45889999999999999999999999999988888877764  23333333


Q ss_pred             HHHHHHHHHHhhh
Q 016123          178 LAIVPFVVCLGAI  190 (394)
Q Consensus       178 ~~~~~~~v~~~~~  190 (394)
                      +.....+..+..+
T Consensus       386 ~~~~~~~a~v~~~  398 (417)
T COG2223         386 LLAFYLVALVLTW  398 (417)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.73  E-value=3.6e-07  Score=91.87  Aligned_cols=171  Identities=8%  Similarity=0.023  Sum_probs=105.2

Q ss_pred             cccccch---hcHHHHHHHcCCChhhhHHHHHHHHhhh-hhhhhhHhhhh----ccCchHHHHHH-HHHHHHHHHHHHHH
Q 016123           28 GNNYTFS---NYSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASD----RIPAPIILLIG-SLEGLVGYGAQWLV   98 (394)
Q Consensus        28 g~~y~~~---~~~~~l~~~~g~s~~~~~~~~~~~~~~~-~~~~~~G~l~D----r~G~r~~~~~g-~~~~~~g~~~~~~~   98 (394)
                      |..++|+   .+.+++.+++|.++.+.+++.....+.. +.+|+.|+++|    |+|||+.++++ .+...+++.++.++
T Consensus        15 Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~   94 (477)
T TIGR01301        15 GVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA   94 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence            3344444   3455677889999999999766555555 46999999999    59999998875 55555666665543


Q ss_pred             HHh------cc-CCchH---HHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CC--CchHHHHHhhhhhhHHHHHHHHHh
Q 016123           99 VSR------KI-QPLSY---WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NR--GPVSGILKGYVGLSTAIFTDLCSA  165 (394)
Q Consensus        99 ~~~------~~-~~~~~---~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~R--G~a~gl~~~~~glg~~i~~~i~~~  165 (394)
                      ..-      .. .....   +...+...+..++......+..+++.+.+|+ +|  +.+.++.....++|+.+...+...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~  174 (477)
T TIGR01301        95 ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAY  174 (477)
T ss_pred             chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            110      00 00001   1122223344456666666777888899984 33  789999888888888887665432


Q ss_pred             h-----cC---C-------ChhHHHHHHHHH-HHHHHHhhhhcccccCC
Q 016123          166 L-----FA---D-------DPAKFLFMLAIV-PFVVCLGAIFFLRETTP  198 (394)
Q Consensus       166 ~-----~~---~-------~~~~~~~~~~~~-~~~v~~~~~~~~~~~p~  198 (394)
                      .     ++   .       ..-+..+.++++ ..+..++..+.+||.|.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~  223 (477)
T TIGR01301       175 SGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL  223 (477)
T ss_pred             HhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence            2     11   0       122444445554 44444555677788664

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.72  E-value=1e-07  Score=95.90  Aligned_cols=131  Identities=11%  Similarity=-0.045  Sum_probs=93.5

Q ss_pred             cchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhc--cCchHHHHHHHHHH--HHHHHHHHHHHHhccCCc
Q 016123           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDR--IPAPIILLIGSLEG--LVGYGAQWLVVSRKIQPL  106 (394)
Q Consensus        32 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr--~G~r~~~~~g~~~~--~~g~~~~~~~~~~~~~~~  106 (394)
                      ....+.+++.+++|++..+.+++.+...++.. ..++.|++.||  +++|+...++....  ++++++....       +
T Consensus       259 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-------~  331 (455)
T TIGR00892       259 APIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA-------G  331 (455)
T ss_pred             chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh-------c
Confidence            33446677767789999999886655556655 47899999998  44554444443333  3333332221       3


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (394)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~  169 (394)
                      +++.+++.+++.|++.+.........+.+.+|+ +||++.|+......+|+++.+++...+.+.
T Consensus       332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~  395 (455)
T TIGR00892       332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA  395 (455)
T ss_pred             hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh
Confidence            566667778888888887767777788888885 699999999999999999999888877764

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.72  E-value=1.5e-07  Score=95.24  Aligned_cols=156  Identities=14%  Similarity=-0.049  Sum_probs=88.6

Q ss_pred             hcHHHH-HHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchH-------HHHHHHHHHHHHHHHHHHHHHhccCC
Q 016123           35 NYSDAL-KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPI-------ILLIGSLEGLVGYGAQWLVVSRKIQP  105 (394)
Q Consensus        35 ~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~-------~~~~g~~~~~~g~~~~~~~~~~~~~~  105 (394)
                      .+.|.+ .+++|++..+.+.+.....++.. ..++.|++.||+|+|+       ...+..++.++........       
T Consensus       273 ~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~-------  345 (476)
T PLN00028        273 NIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA-------  345 (476)
T ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc-------
Confidence            344554 67789999998887666666665 4789999999998762       2222222222222221111       


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016123          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVV  185 (394)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v  185 (394)
                      .+.+...+..++.+++.+...........+..|++||.+.|+...+..+|+.+.+.+.. .-....++..+++..+..++
T Consensus       346 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i  424 (476)
T PLN00028        346 NSLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIA  424 (476)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHH
Confidence            13333333334444444333333334445566788999999998887788888876653 11112233334444455566


Q ss_pred             HHhhhhcccccCC
Q 016123          186 CLGAIFFLRETTP  198 (394)
Q Consensus       186 ~~~~~~~~~~~p~  198 (394)
                      +.+..+++|.+.+
T Consensus       425 ~~~~~~~~~~~~~  437 (476)
T PLN00028        425 CTLPVAFIHFPQW  437 (476)
T ss_pred             HHHHHHheeccch
Confidence            6666666664443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.72  E-value=1.6e-07  Score=94.95  Aligned_cols=123  Identities=16%  Similarity=0.086  Sum_probs=77.7

Q ss_pred             HHHHHHcCCChhhhHHHHHHHHhh-hhhhhhhHhhhh----ccCc-hHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHH
Q 016123           38 DALKTLMNLTQLELNNLSVVKDIG-KAFGLLAGLASD----RIPA-PIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM  111 (394)
Q Consensus        38 ~~l~~~~g~s~~~~~~~~~~~~~~-~~~~~~~G~l~D----r~G~-r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l  111 (394)
                      ..+.+.+|++..+++.+....-+. .+..|+.|.++|    |+|+ |+-+++|.+..++++.++... .+......++.+
T Consensus        31 ~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~-p~~~~~~~~~~~  109 (473)
T PRK10429         31 YYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA-HLFEGTAQYVFV  109 (473)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC-CCCCccHHHHHH
Confidence            346788899999999965444444 455899999999    5699 556667888877776665421 110000112233


Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHHhcc--cCCCchHHHHHhhhhhhHHHHHH
Q 016123          112 CVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTD  161 (394)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gl~~~~~glg~~i~~~  161 (394)
                      ++..++.+++..+..++..+...+.-+  ++|....+....+..+|+.+.+.
T Consensus       110 ~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~  161 (473)
T PRK10429        110 CVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAG  161 (473)
T ss_pred             HHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445556666666666667777663  56999888866655666555543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.72  E-value=5.3e-07  Score=90.13  Aligned_cols=170  Identities=17%  Similarity=0.152  Sum_probs=110.7

Q ss_pred             HHhcccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016123           25 AISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKI  103 (394)
Q Consensus        25 ~~~g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~  103 (394)
                      ...| .+....|...+-++-|++..+..+.+....+... .++++.+++||+|||++++++..++.+...++.....-..
T Consensus       282 q~sG-i~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~  360 (485)
T KOG0569|consen  282 QFSG-INAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSN  360 (485)
T ss_pred             HhcC-cceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444 3456677788888999999988887666655554 4899999999999999999999998887776654322111


Q ss_pred             CCchHHH--HH---HHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHH
Q 016123          104 QPLSYWQ--MC---VFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFM  177 (394)
Q Consensus       104 ~~~~~~~--l~---~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~  177 (394)
                      . ...|.  ++   ++.++..++.|.. +.++-..+|.||+ .|..|.++......++.++....+..+.+.-+. +.++
T Consensus       361 ~-~~~~~~y~~i~~~~~~~~~f~~G~g-pi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~fi  437 (485)
T KOG0569|consen  361 S-FGSWLSYLCIAAIFLFIISFAIGPG-PIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFI  437 (485)
T ss_pred             H-hhhHHHHHHHHHHHHHHHhhhcCCC-chhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhH
Confidence            0 11122  11   2233344444443 4667788999996 699999999999999888877766665543222 4444


Q ss_pred             HHHHHHHHHHhhhhcccccCCCC
Q 016123          178 LAIVPFVVCLGAIFFLRETTPAS  200 (394)
Q Consensus       178 ~~~~~~~v~~~~~~~~~~~p~~~  200 (394)
                      +-+++.++..+  +..+..||++
T Consensus       438 lF~i~~~~~~i--~~~~~lPETk  458 (485)
T KOG0569|consen  438 LFVIPLAIFLI--YLYRYLPETK  458 (485)
T ss_pred             HHHHHHHHHHH--HHHHhCcccC
Confidence            44444333332  3334555543

>TIGR00895 2A0115 benzoate transport

Probab=98.71  E-value=2e-07  Score=90.86  Aligned_cols=129  Identities=14%  Similarity=0.074  Sum_probs=92.5

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      +....+.|.+.+++|++..+.+.+.....++.. ..++.|++.||+|+|+......+.....+.+.. . .     .+.+
T Consensus       267 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-----~~~~  339 (398)
T TIGR00895       267 YFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGS-T-L-----FSPT  339 (398)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-H-h-----hCHH
Confidence            344556777888999999988886666666665 478999999999999554443333333333222 1 1     2344


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhh
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSAL  166 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~  166 (394)
                      .+++..++.|++.+..+......+.+.+|+ +||++.|+..+...+|+.+.+.+...+
T Consensus       340 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       340 LLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            555566777888877777778888999985 699999999999999988888776543

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.71  E-value=2.5e-07  Score=89.73  Aligned_cols=144  Identities=13%  Similarity=0.026  Sum_probs=87.6

Q ss_pred             cchhcHHHH-HHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHH-HHHHHHHHHHHHHHHH--HHhccCCc
Q 016123           32 TFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILL-IGSLEGLVGYGAQWLV--VSRKIQPL  106 (394)
Q Consensus        32 ~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~-~g~~~~~~g~~~~~~~--~~~~~~~~  106 (394)
                      .+..+.|.+ ++++|.+..+.+++.....++.. ..++.|++.||+|+|+... .......++.+.....  ..+..  +
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  310 (399)
T TIGR00893       233 FFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYV--N  310 (399)
T ss_pred             HHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccc--h
Confidence            344455554 67789999998886666666655 4789999999999996111 1111111111111110  01100  1


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCCh-hHHHHHH
Q 016123          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDP-AKFLFML  178 (394)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~-~~~~~~~  178 (394)
                      +.+.......+.+.+.+ ..+.......+.+|+ +||++.|+......+|+.+.+.+...+.+... ++..+.+
T Consensus       311 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~  383 (399)
T TIGR00893       311 IPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMV  383 (399)
T ss_pred             hHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHH
Confidence            23333333333444444 456677788899985 69999999999999999999999888877533 4433333

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.71  E-value=2.5e-07  Score=93.36  Aligned_cols=133  Identities=12%  Similarity=0.091  Sum_probs=101.6

Q ss_pred             chhcHHHH-HHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHH
Q 016123           33 FSNYSDAL-KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (394)
Q Consensus        33 ~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  110 (394)
                      ...+.|.+ ++.+|++..+.+++.....++.. ..++.|++.||+|+|+.+.++..+.+++...+.+....   +.+.+.
T Consensus       274 ~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~  350 (485)
T TIGR00711       274 SFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP---DTPFLA  350 (485)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC---CCCHHH
Confidence            33455654 66789999999987666666665 48999999999999999999998888887766522111   124555


Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      +....++.|+|.+..+.+......+.+| ++||.+.|+......+|+.+.+.+...+++
T Consensus       351 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       351 IALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556778888888776666666777888 579999999999999999999988887764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.70  E-value=1.2e-06  Score=85.30  Aligned_cols=120  Identities=11%  Similarity=0.094  Sum_probs=75.5

Q ss_pred             HHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 016123           40 LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (394)
Q Consensus        40 l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (394)
                      +.+++|++..+.+++.....++.. ..++.|++.||+|+|+++.++.++..+...........   +.+.+...+...+.
T Consensus       221 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  297 (377)
T PRK11102        221 YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL---DLGFWALVVGVAAF  297 (377)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHH
Confidence            567789999999986666666655 47899999999999999998887654432222211100   02344333333333


Q ss_pred             hhhhhhhhhhHHHHHHHhcccCCCchHHHHHhh-hhhhHHHHHHH
Q 016123          119 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGY-VGLSTAIFTDL  162 (394)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~-~glg~~i~~~i  162 (394)
                      +.+.+.........+.+..|++||.+.++.... +++|+.+.+.+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~  342 (377)
T PRK11102        298 VGCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALL  342 (377)
T ss_pred             HHHHHHhhHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444445556677888899999997654 45665555544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.70  E-value=2.7e-07  Score=90.43  Aligned_cols=128  Identities=15%  Similarity=0.082  Sum_probs=88.8

Q ss_pred             cHHH-HHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 016123           36 YSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (394)
Q Consensus        36 ~~~~-l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~  113 (394)
                      +.|. +++++|++..+.+++.....++... .++.|++.||+|+|+.+.++.+...+........  .    .+.+.+.+
T Consensus       260 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~  333 (405)
T TIGR00891       260 LLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI--G----ANVAVLGL  333 (405)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh--C----CchHHHHH
Confidence            3444 5678999999999876666666654 7899999999999999988876653332222111  1    23444444


Q ss_pred             HHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123          114 FLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (394)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~  169 (394)
                      ..++.+...+.........+.+.+|+ +||+++|+......+|+.+.+++...+.+.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~  390 (405)
T TIGR00891       334 GLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR  390 (405)
T ss_pred             HHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            43444433333334455677899984 799999999998899999999988887764

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.69  E-value=2.9e-07  Score=88.67  Aligned_cols=128  Identities=12%  Similarity=-0.035  Sum_probs=98.4

Q ss_pred             hcHHHHHH-HcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 016123           35 NYSDALKT-LMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (394)
Q Consensus        35 ~~~~~l~~-~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~  112 (394)
                      .+.|.+.+ .+|++..+.+.+.....++... .++.|++.||+|+|+.+..+.++.+++.....+.  .    ++.+.+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~  305 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT--P----PNFPLFL  305 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh--c----hhHHHHH
Confidence            44566544 5899999999876666666654 7899999999999999998877777776655443  1    1255666


Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          113 VFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      +..++.|++.+..++.......+.+|+ +||++.|+......+++.+.+.+...+.+
T Consensus       306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888888887777777888899985 69999999999999999988887766543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.69  E-value=7.9e-07  Score=87.43  Aligned_cols=144  Identities=9%  Similarity=-0.102  Sum_probs=91.0

Q ss_pred             cHHHHHHHcCCChhhhHHHHHHHH-hhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 016123           36 YSDALKTLMNLTQLELNNLSVVKD-IGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (394)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~~~~~~~-~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~  113 (394)
                      +.+++.+|.|++.++++++..... ..... .++.|++.||+|+|+.+.++.++.++...... ........++.+.++.
T Consensus       230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  308 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWF-AQAAFWLAPGIAVAWS  308 (390)
T ss_pred             HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHcccCCcHHHHHH
Confidence            344555568999999998654433 34444 67999999999999999887776643332221 1111100012333333


Q ss_pred             HHHHHhhhhhhhhhhHHHHHHHhcc--cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHH
Q 016123          114 FLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAI  180 (394)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~  180 (394)
                      ...+.+++.+..+........+..+  ++||+..++.++..++|..+.+.+...+.+....+..+..+.
T Consensus       309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~  377 (390)
T TIGR02718       309 CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGT  377 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            3344455556555555666667764  468999999999999999999988888776433333333333

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11043 putative transporter; Provisional

Probab=98.69  E-value=1.6e-06  Score=85.55  Aligned_cols=137  Identities=15%  Similarity=0.099  Sum_probs=92.3

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      +.+..+.|.+.+++|++..+.++......++... +.+.+++.||+|+|+....+.+..+++...+.......  .++.+
T Consensus       220 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  297 (401)
T PRK11043        220 FAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS--HPSLV  297 (401)
T ss_pred             HHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc--cCcHH
Confidence            3444556777778999999988755544445444 67889999999999987766666555544333221110  12333


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~  169 (394)
                      .+.+...+.|++.+..+........+.+|++||.+.|+..+....++...+++...+.+.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        298 PLLIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            334444566677777666666666677898999999999987777778888887777653

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.64  E-value=1.4e-06  Score=85.48  Aligned_cols=136  Identities=10%  Similarity=0.020  Sum_probs=84.5

Q ss_pred             HHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 016123           38 DALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLC  116 (394)
Q Consensus        38 ~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~  116 (394)
                      |.+++.+|++..+.+++.....++.. ..++.|++.||+|+|+.+..+..+..++.++.... .     ++.+...+..+
T Consensus       224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~-~-----~~~~~~~~~~~  297 (382)
T PRK10091        224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF-G-----GMKTASLIFAF  297 (382)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH-H-----hhHHHHHHHHH
Confidence            44566789999999887666666665 47899999999999999999888888877655432 1     12333333334


Q ss_pred             HHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCC-ChhHHHHHHH
Q 016123          117 MGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLA  179 (394)
Q Consensus       117 l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~-~~~~~~~~~~  179 (394)
                      +.+.|......+......+..+++|..+.+.......+|.++.+.+...+++. ...+..+...
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~  361 (382)
T PRK10091        298 ICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPA  361 (382)
T ss_pred             HHHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHH
Confidence            44444433233233333344433333333344566789999999988888764 3333333333

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.63  E-value=2.1e-06  Score=84.73  Aligned_cols=130  Identities=8%  Similarity=-0.079  Sum_probs=91.2

Q ss_pred             HHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHH-HHHHHHHHHHHhccCCchHHHHHHH
Q 016123           37 SDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGL-VGYGAQWLVVSRKIQPLSYWQMCVF  114 (394)
Q Consensus        37 ~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~~  114 (394)
                      .|.+.+++|++..+.+.+.....++... .++.|++.||.+ |+....+.++.. .+..+....       ++.+.+.+.
T Consensus       240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~-------~~~~~~~~~  311 (394)
T PRK10213        240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG-------SDKIVATGV  311 (394)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHH
Confidence            3667788999999888866655666654 789999999965 444444444433 333332221       245666666


Q ss_pred             HHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHH
Q 016123          115 LCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKF  174 (394)
Q Consensus       115 ~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~  174 (394)
                      .++.|++.+..+....+.+.+..|++++.+.++......+|..+.+.+...+++....+.
T Consensus       312 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~  371 (394)
T PRK10213        312 AIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTS  371 (394)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhh
Confidence            777888888777666667888889888888888888888999999998888887543333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.59  E-value=2.1e-06  Score=87.62  Aligned_cols=148  Identities=14%  Similarity=0.079  Sum_probs=108.7

Q ss_pred             cHHHH-HHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 016123           36 YSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (394)
Q Consensus        36 ~~~~l-~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~  113 (394)
                      ..|.+ ++++|.+....+++..+..+|.+. +.+.+++.+|+++++++..+.+.++++.+.+++.       ++.|..++
T Consensus       240 LlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-------~~~~~~~~  312 (524)
T PF05977_consen  240 LLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-------PSFWLALI  312 (524)
T ss_pred             hhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-------hHHHHHHH
Confidence            34555 678999999999988888888876 7899999999999999999998888887776653       35676666


Q ss_pred             HHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhh
Q 016123          114 FLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAI  190 (394)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  190 (394)
                      ..++.|++.....+...+..++.-|+ .||+++++..+....+..+.+.+...+.+....+..+.++.+..++..+..
T Consensus       313 ~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  313 ALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            77788888777766677788888896 599999999887766667777766666554333333344444333333333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.57  E-value=1.3e-06  Score=87.23  Aligned_cols=158  Identities=16%  Similarity=0.175  Sum_probs=88.7

Q ss_pred             cchhcHHHH-HHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhcc--CchHHH-HHHHHHHHHHHHHHHHHHHhccCCc
Q 016123           32 TFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRI--PAPIIL-LIGSLEGLVGYGAQWLVVSRKIQPL  106 (394)
Q Consensus        32 ~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~--G~r~~~-~~g~~~~~~g~~~~~~~~~~~~~~~  106 (394)
                      ....+.|.+ ++++|++..+.+.......++..+ .++.|++.||+  ++|+.. ....+...+........  .   ..
T Consensus       261 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~--~---~~  335 (434)
T PRK11663        261 AINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM--P---FA  335 (434)
T ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc--c---cc
Confidence            344466665 477899999988866666666654 78999999998  333322 22221122222111111  1   01


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChh-HHHHHHHHHHHH
Q 016123          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPA-KFLFMLAIVPFV  184 (394)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~-~~~~~~~~~~~~  184 (394)
                      +.+.+.+..+..|++.............+.+| ++||+++|+.++...+|+++.+++...+.+...+ ..+..++++..+
T Consensus       336 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~  415 (434)
T PRK11663        336 SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGI  415 (434)
T ss_pred             cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHH
Confidence            22222222222332221111122334578887 5799999999999999999999998888765333 344444444444


Q ss_pred             HHHhhhhccc
Q 016123          185 VCLGAIFFLR  194 (394)
Q Consensus       185 v~~~~~~~~~  194 (394)
                      .+++..++.|
T Consensus       416 ~~~~~~~~~~  425 (434)
T PRK11663        416 SALLLLPFLN  425 (434)
T ss_pred             HHHHHHHHHh
Confidence            4444444444

>PRK09848 glucuronide transporter; Provisional

Probab=98.57  E-value=9.5e-07  Score=88.64  Aligned_cols=123  Identities=9%  Similarity=-0.037  Sum_probs=70.3

Q ss_pred             cHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhcc----CchHHH-HHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           36 YSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRI----PAPIIL-LIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~----G~r~~~-~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      +...+++.+|++..+++.+.....+... ..|+.|+++||.    |||+.. +++.+...+...+..............+
T Consensus        31 l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (448)
T PRK09848         31 LLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV  110 (448)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence            3445788899999999997666666655 589999999997    667754 5666655544443321110101001122


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhc--ccCCCchHHHHHhhhhhhHHH
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNF--RRNRGPVSGILKGYVGLSTAI  158 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~F--p~~RG~a~gl~~~~~glg~~i  158 (394)
                      ..+...++.+++.++..++......+.-  |++|....+.-..+..+++.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~  161 (448)
T PRK09848        111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVC  161 (448)
T ss_pred             HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            2233344556666666554444444333  346887766665544444333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.56  E-value=1.5e-06  Score=85.62  Aligned_cols=140  Identities=12%  Similarity=0.111  Sum_probs=94.9

Q ss_pred             CCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhh
Q 016123           45 NLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTT  123 (394)
Q Consensus        45 g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g  123 (394)
                      +.+....+.+.+...+... ..+..|++.||+|+|+.+.++.++.++++.+....       ++.+.+++..++.|++.+
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~-------~~~~~~~~~~~l~g~~~~  322 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA-------TTALEVVILKMLHAFEVP  322 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHH
Confidence            4555566665444444443 47889999999999999999999888877765432       355666666777777766


Q ss_pred             hhhhhHHHHHHHhccc-CCCchHHH-HHhhhhhhHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHhhhh
Q 016123          124 WMNTAVLVTCIRNFRR-NRGPVSGI-LKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVCLGAIF  191 (394)
Q Consensus       124 ~~~~~~~~~~~~~Fp~-~RG~a~gl-~~~~~glg~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~  191 (394)
                      ...........+.+|+ .|+++.+. .+....+|+.+.+.+...+.+. +....+.+.+++..+.+++..+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       323 FLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            5544455556666664 36666555 4567788999998888888774 3445566666666666655544

>TIGR01272 gluP glucose/galactose transporter

Probab=98.55  E-value=1.9e-06  Score=82.33  Aligned_cols=118  Identities=16%  Similarity=0.109  Sum_probs=88.4

Q ss_pred             HcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhh
Q 016123           43 LMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNS  121 (394)
Q Consensus        43 ~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g  121 (394)
                      ++|++..+.+...+....+... .++.+++.||+|+|+++.++.++..++..+....       ++.+.++ ..++.|++
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-------~~~~~~~-~~~l~g~~  243 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-------HGYVAMW-FVLALGLF  243 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-------CCHHHHH-HHHHHHHH
Confidence            3699999998876666666655 6899999999999999988888777776544322       1222222 33467788


Q ss_pred             hhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123          122 TTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (394)
Q Consensus       122 ~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~  169 (394)
                      .+..++.......+.+|++.+.+.++.. ...+|+++.|++...+.+.
T Consensus       244 ~s~i~P~~~s~a~~~~~~~~~~asai~~-~~~~Gg~i~P~l~G~lad~  290 (310)
T TIGR01272       244 NSIMFPTIFSLALNALGRHTSQGSGILC-LAIVGGAIVPLLQGSLADC  290 (310)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHHHHH-HHHhcchHHHHHHHHHHHh
Confidence            8888887788888999988888888864 4568999999988877664

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.53  E-value=4.9e-06  Score=82.24  Aligned_cols=147  Identities=14%  Similarity=0.150  Sum_probs=90.2

Q ss_pred             HHHHHHcCCChhhhHHHHH-HHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHH
Q 016123           38 DALKTLMNLTQLELNNLSV-VKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFL  115 (394)
Q Consensus        38 ~~l~~~~g~s~~~~~~~~~-~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~  115 (394)
                      +.+.+++|++..+.+++.. ....+.. ..++.|++.||+|+|+.+.++.+...+..+.+......  + ++.+.+.+..
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~--~-~~~~~~~~~~  310 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT--P-KHLWTMALAI  310 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--C-CcHHHHHHHH
Confidence            4467789999999998643 3333444 47899999999999998887777666554433221111  0 1334433322


Q ss_pred             ----HHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhh
Q 016123          116 ----CMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAI  190 (394)
Q Consensus       116 ----~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  190 (394)
                          +..|++.+..+......+.+.+|.+   ..++..+..++|..+.+++...+.+...++.++.++.+..+++++..
T Consensus       311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        311 GIENLCGGMGTAAFVALLMALCNRSFSAT---QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence                4555666655666666777777742   34555555577777777776666665556666666555554444433

>TIGR00901 2A0125 AmpG-related permease

Probab=98.53  E-value=1.5e-06  Score=84.19  Aligned_cols=120  Identities=10%  Similarity=0.071  Sum_probs=84.9

Q ss_pred             hhcHHHHHHHcCCChhhhHHHHH-HHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhc----cCCch
Q 016123           34 SNYSDALKTLMNLTQLELNNLSV-VKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRK----IQPLS  107 (394)
Q Consensus        34 ~~~~~~l~~~~g~s~~~~~~~~~-~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~----~~~~~  107 (394)
                      ..+.|++.+++|++..+.+.+.. ...+.... .+++|++.||+|+|+.+.++.++.+++...+.+.....    ...++
T Consensus       229 ~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (356)
T TIGR00901       229 TVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPH  308 (356)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Confidence            34456665569999999987544 33344444 78999999999999999999888877766554321110    00013


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhh
Q 016123          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVG  153 (394)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~g  153 (394)
                      .+.+....++.+++.+..+.......++.+| ++||+..|+.++..+
T Consensus       309 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       309 LLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            4555556677788888888888899999998 469999999876543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.51  E-value=2.2e-06  Score=95.96  Aligned_cols=121  Identities=17%  Similarity=0.094  Sum_probs=92.8

Q ss_pred             HHHHHHcCCChh-hhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHH
Q 016123           38 DALKTLMNLTQL-ELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFL  115 (394)
Q Consensus        38 ~~l~~~~g~s~~-~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~  115 (394)
                      +.+++.+|++.. +.+++.....++.++ +++.|++.||+++|+++.++.++.+++.+++.+.       .+.+.+++..
T Consensus       257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  329 (1146)
T PRK08633        257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA-------PSLASVLVLF  329 (1146)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh-------hhHHHHHHHH
Confidence            345778999998 888877777777764 7899999999999999988888887777666543       2455566667


Q ss_pred             HHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHh
Q 016123          116 CMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSA  165 (394)
Q Consensus       116 ~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~  165 (394)
                      ++.|++.++...+....+.+.+|+ +||+++|+......+|+++.+.+...
T Consensus       330 ~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~  380 (1146)
T PRK08633        330 FLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTL  380 (1146)
T ss_pred             HHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            778888887766777778888885 69999999988888887665544433

>PRK10054 putative transporter; Provisional

Probab=98.51  E-value=4.9e-06  Score=82.15  Aligned_cols=149  Identities=9%  Similarity=-0.032  Sum_probs=95.3

Q ss_pred             HcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhh
Q 016123           43 LMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNS  121 (394)
Q Consensus        43 ~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g  121 (394)
                      +.+.+....+.+.....+... ..++.|++.||+++|+.+..+.++..+++...... .     ++.+.+.+..++.|+|
T Consensus       238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~g  311 (395)
T PRK10054        238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-G-----NSLLLWGMSAAVFTVG  311 (395)
T ss_pred             ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc-c-----hHHHHHHHHHHHHHHH
Confidence            445566566654333333333 36889999999999999999988888887766532 1     2455555566777777


Q ss_pred             hhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChh-HHHHHHHHHHHHHHHhhhhcccccCC
Q 016123          122 TTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPA-KFLFMLAIVPFVVCLGAIFFLRETTP  198 (394)
Q Consensus       122 ~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~p~  198 (394)
                      .+...+.....+.+.-|+ +||.+.+... ...+|.++.+.+...+++.... ..+..++...++..++...-.|++|.
T Consensus       312 ~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (395)
T PRK10054        312 EIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARPW  389 (395)
T ss_pred             HHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCcc
Confidence            765544445556676774 6999988765 3457888888888777765433 34444444444444444444555554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.50  E-value=2.7e-06  Score=85.77  Aligned_cols=158  Identities=15%  Similarity=0.124  Sum_probs=90.4

Q ss_pred             ccchhcHHHH-HHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHH--------HHHHHHHHHHHHHHHHHHHH
Q 016123           31 YTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPII--------LLIGSLEGLVGYGAQWLVVS  100 (394)
Q Consensus        31 y~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~--------~~~g~~~~~~g~~~~~~~~~  100 (394)
                      +.+..+.|.+ ++++|.+..+.+++.....++.. ..++.|++.||+++|+.        +..+......+.........
T Consensus       278 ~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (465)
T TIGR00894       278 TILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL  357 (465)
T ss_pred             HHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4445566765 67789999999987666666665 47899999998765421        11111111111111111110


Q ss_pred             hccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCC---hhHHHHH
Q 016123          101 RKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADD---PAKFLFM  177 (394)
Q Consensus       101 ~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~---~~~~~~~  177 (394)
                        .  .+.+...+...+.+.+.+...........+..|+.+|.+.|+......+|+.+.+.+...+.+.+   .+...+.
T Consensus       358 --~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~  433 (465)
T TIGR00894       358 --S--AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFL  433 (465)
T ss_pred             --C--CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHH
Confidence              0  12222232333444343433333334455777888999999999999999999998888777542   2444444


Q ss_pred             HHHHHHHHHHhhhhc
Q 016123          178 LAIVPFVVCLGAIFF  192 (394)
Q Consensus       178 ~~~~~~~v~~~~~~~  192 (394)
                      +..+..+++.+...+
T Consensus       434 ~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       434 IMAFVNILCVIFYLI  448 (465)
T ss_pred             HHHHHHHHHHHHeee
Confidence            444444444444333

>TIGR01272 gluP glucose/galactose transporter

Probab=98.49  E-value=1.2e-06  Score=83.65  Aligned_cols=191  Identities=12%  Similarity=0.032  Sum_probs=120.9

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016123          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVV  185 (394)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v  185 (394)
                      +++.+.+..++.|.|.++..+.....++...| |++.+.+++.++.+++|+.+.|.+...++...               
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~---------------   73 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSG---------------   73 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC---------------
Confidence            56777778889999999999999999999987 57999999999999999999998887765310               


Q ss_pred             HHhhhhcccccCCCCCcc--ccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhcccccc
Q 016123          186 CLGAIFFLRETTPASTVD--EEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFI  263 (394)
Q Consensus       186 ~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~  263 (394)
                               ..+....+.  +.....|+..+...+.+.                          . ++...+. .    .
T Consensus        74 ---------~~~~~~~~~~~~~~~~~~~~~yl~ia~~~--------------------------~-~~~i~~~-~----~  112 (310)
T TIGR01272        74 ---------AGDLSMQVATANAEAAKVHTPYLLLAGAL--------------------------A-VLAIIFA-F----L  112 (310)
T ss_pred             ---------CcchhhhhhhhhHHHHHHHHHHHHHHHHH--------------------------H-HHHHHHH-H----c
Confidence                     000000000  001134554433222110                          0 0000000 0    1


Q ss_pred             cccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHh
Q 016123          264 KSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLC  343 (394)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~  343 (394)
                      +     .|+.+  .++   .++                   ++       +++     +...++.+|+|.+|+..+.+++
T Consensus       113 ~-----~p~~~--~~~---~~~-------------------~~-------~~~-----~~~~~~~~~~~~~~l~~~~~f~  151 (310)
T TIGR01272       113 P-----LPELQ--EAD---VAR-------------------VS-------SGD-----TTQKTSAFQFTHLVLGALGIFV  151 (310)
T ss_pred             c-----CCCCC--ccc---ccc-------------------cc-------ccc-----ccchhhHHhhHHHHHHHHHHHH
Confidence            1     11000  000   000                   00       000     0112346789999999999999


Q ss_pred             cccceeeeeeChHHHHHHh---CCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          344 GVGTGLAVMNNMGQIGLAL---GYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       344 ~~g~g~~~~~n~~~i~~~~---G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      ..+.-..+.+.++.++++.   |.+  +++...+.+..+-.+||++.+++.||+++
T Consensus       152 yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~  207 (310)
T TIGR01272       152 YVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQ  207 (310)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence            8888888888888888753   665  46788999999999999999999999963

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10133 L-fucose transporter; Provisional

Probab=98.49  E-value=4.4e-06  Score=83.76  Aligned_cols=120  Identities=9%  Similarity=-0.044  Sum_probs=90.4

Q ss_pred             HHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHh
Q 016123           41 KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG  119 (394)
Q Consensus        41 ~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G  119 (394)
                      ++.+|+|..+.++......++... .++.|++.||+|+|+++..+.++..++..+..+.       ++.+. .....+.|
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~l~g  358 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------GGHVG-LIALTLCS  358 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-------CChHH-HHHHHHHH
Confidence            567899999999876666666655 7899999999999999988877776655443321       12222 23345678


Q ss_pred             hhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123          120 NSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (394)
Q Consensus       120 ~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~  169 (394)
                      ++.+..++.......+.+|++.+.+.++... ..+|+.+.+++...+.+.
T Consensus       359 lg~~~i~P~~~s~a~~~~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~  407 (438)
T PRK10133        359 AFMSIQYPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDA  407 (438)
T ss_pred             HHHHHHHHHHHHHHHcccchhhccchhHHhH-HhccchHHHHHHHHHHHh
Confidence            8888888888888889999988899998875 447888888888776654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.48  E-value=2.8e-06  Score=84.97  Aligned_cols=163  Identities=9%  Similarity=-0.070  Sum_probs=84.7

Q ss_pred             ccchhcHHHH-HHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123           31 YTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (394)
Q Consensus        31 y~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  108 (394)
                      |.+..+.|.+ +++.|++..+.+++.....++.. ..++.|++.||+++++....+.....+.............  .+.
T Consensus       268 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  345 (438)
T TIGR00712       268 YGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPA--GNP  345 (438)
T ss_pred             HHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCC--Cch
Confidence            4555566665 55679999988886555555554 4789999999997554333333322222111111001100  123


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhH-HHHHHHHHhhcCCChh-HHHHHHHHHHHHH
Q 016123          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLST-AIFTDLCSALFADDPA-KFLFMLAIVPFVV  185 (394)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~-~i~~~i~~~~~~~~~~-~~~~~~~~~~~~v  185 (394)
                      +..+...++.|.+.............+.+|+ +||+++|+......+|+ ++.+.+...+.+...+ ..+..+.+...+.
T Consensus       346 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~  425 (438)
T TIGR00712       346 LVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILA  425 (438)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHH
Confidence            3333223333333211111112345688884 69999999987666665 4566666666554222 3333334434444


Q ss_pred             HHhhhhcccc
Q 016123          186 CLGAIFFLRE  195 (394)
Q Consensus       186 ~~~~~~~~~~  195 (394)
                      .+...+++++
T Consensus       426 ~~~~~~~~~~  435 (438)
T TIGR00712       426 VILLIVVMIG  435 (438)
T ss_pred             HHHHHHHHhh
Confidence            4444444443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.46  E-value=1.2e-05  Score=78.99  Aligned_cols=126  Identities=13%  Similarity=0.156  Sum_probs=84.8

Q ss_pred             HHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 016123           40 LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (394)
Q Consensus        40 l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (394)
                      +++.+|++..+.+++.....++... +++.+++.||++++...  +.....++...........  ..+.+.++...++.
T Consensus       234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  309 (394)
T PRK11652        234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWFG--VMNVWTLLVPAALF  309 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence            4566899999988866665666654 68899999999833322  2222222222211110000  02345555566778


Q ss_pred             hhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123          119 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (394)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~  169 (394)
                      |+|.+..++.......+.+|+++|.+.++..+...+|+.+.+.+...+...
T Consensus       310 ~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        310 FFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            888887777777778889999999999999999999999998887665444

>TIGR00898 2A0119 cation transport protein

Probab=98.46  E-value=1.9e-06  Score=87.72  Aligned_cols=96  Identities=16%  Similarity=0.045  Sum_probs=71.6

Q ss_pred             hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCC
Q 016123           64 FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRG  142 (394)
Q Consensus        64 ~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG  142 (394)
                      ..++.+++.||+|||+.+.++.++.+++.++..+..     +...+......++.+++.+..+.......++.||+ .|+
T Consensus       371 ~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  445 (505)
T TIGR00898       371 AKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP-----VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRN  445 (505)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHh
Confidence            367889999999999999999988888777665431     11123333344455555555566667778899995 699


Q ss_pred             chHHHHHhhhhhhHHHHHHHHH
Q 016123          143 PVSGILKGYVGLSTAIFTDLCS  164 (394)
Q Consensus       143 ~a~gl~~~~~glg~~i~~~i~~  164 (394)
                      +++|+..+...+|+++.+.+..
T Consensus       446 ~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       446 LGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             hhHhHHHHHHHHHHHHHhHHHH
Confidence            9999999999999999888776

>TIGR00788 fbt folate/biopterin transporter

Probab=98.45  E-value=3.7e-06  Score=85.02  Aligned_cols=168  Identities=17%  Similarity=0.153  Sum_probs=105.9

Q ss_pred             HHHhcccccc-hhcHHHHHHHcCCChhhhHHHHHHHHhhhhhhhhhHhhhhccC-----chHHHHHHHHHHH-HHHHHHH
Q 016123           24 QAISGNNYTF-SNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIP-----APIILLIGSLEGL-VGYGAQW   96 (394)
Q Consensus        24 ~~~~g~~y~~-~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G-----~r~~~~~g~~~~~-~g~~~~~   96 (394)
                      .++-|..+.. ....+.+++++|+|.++++.+.+...+...+.++.|.+.||++     ||+.++++.++.. +++..++
T Consensus        35 y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~  114 (468)
T TIGR00788        35 LFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLP  114 (468)
T ss_pred             HHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcc
Confidence            3444444222 2344557888999999998877777777778888999999998     7777888876663 3332221


Q ss_pred             HHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhh---hhhhHHHHHHHHHhhcCCChhH
Q 016123           97 LVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGY---VGLSTAIFTDLCSALFADDPAK  173 (394)
Q Consensus        97 ~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~---~glg~~i~~~i~~~~~~~~~~~  173 (394)
                      .     .+ .......+..++.+++.+..+++.-....+..++++....++....   .++|..+.+.+...+.+...|+
T Consensus       115 ~-----~~-~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~  188 (468)
T TIGR00788       115 G-----KV-SSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTR  188 (468)
T ss_pred             c-----cc-chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            1     11 1222223367788888888888888899999985554443333333   3467777777776666543455


Q ss_pred             HHHHHHHHHHHHHHhhhhcccccC
Q 016123          174 FLFMLAIVPFVVCLGAIFFLRETT  197 (394)
Q Consensus       174 ~~~~~~~~~~~v~~~~~~~~~~~p  197 (394)
                      ..+++.....++.++..++++|++
T Consensus       189 ~~f~~~a~l~ll~~~~~~~~~E~~  212 (468)
T TIGR00788       189 ILFLITAALLLLQLFVSNLSKERR  212 (468)
T ss_pred             hHHHHHHHHHHHHHHHHHhccccc
Confidence            444444433344455566667653

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00896 CynX cyanate transporter

Probab=98.45  E-value=3.6e-06  Score=81.52  Aligned_cols=130  Identities=14%  Similarity=0.102  Sum_probs=89.7

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhcc-CchHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRI-PAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~-G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  108 (394)
                      +....+.|.+.+++|++..+.+.+.+...++.+. .++.|++.||+ ++|+++.++.++..++...+.+...     ...
T Consensus       214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  288 (355)
T TIGR00896       214 YSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM-----HGL  288 (355)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh-----hHH
Confidence            4445567777677899999998876666666655 78999999999 5666777777777777766554311     111


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHhc-c-cCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNF-R-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~F-p-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      +   ...++.|++.+..++.......+.+ + +++|.+.|+......+++++.+.+...+.+
T Consensus       289 ~---~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~  347 (355)
T TIGR00896       289 W---AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD  347 (355)
T ss_pred             H---HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1   1345677888776655555555444 3 457999999887777777888877776654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.44  E-value=2.1e-05  Score=77.29  Aligned_cols=118  Identities=11%  Similarity=-0.092  Sum_probs=72.3

Q ss_pred             HHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 016123           40 LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (394)
Q Consensus        40 l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (394)
                      +++++|++..+.+.+.....++.. ..++.|++.||+|+|+.+.++..+..++........       +.+..+....+.
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~  302 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP-------SHAVSLFGITLI  302 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            467889999888876555555554 478999999999999999999988888877665531       222222222333


Q ss_pred             hhhhhhhhhhHHHHHHHhcc--cCCCchHHHHHhhhhhhHHHHHHHHHhh
Q 016123          119 GNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSAL  166 (394)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gl~~~~~glg~~i~~~i~~~~  166 (394)
                      +.|.+..+..  ....+..|  ++.|.+.++...+..+|+.+.+.+...+
T Consensus       303 ~~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~  350 (392)
T PRK10473        303 CAGFSVGFGV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVL  350 (392)
T ss_pred             HHHHHHHhHH--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333332222  22233445  3456666666555556666665555443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.44  E-value=1.1e-05  Score=79.69  Aligned_cols=155  Identities=12%  Similarity=0.071  Sum_probs=103.2

Q ss_pred             cHHHHHHHcC-CChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHH--
Q 016123           36 YSDALKTLMN-LTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM--  111 (394)
Q Consensus        36 ~~~~l~~~~g-~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l--  111 (394)
                      |.+.+-++.| .+....+...+...+.=+. -...+++..|+|.|+++.++.+...+=+.+++...      ++.+..  
T Consensus       229 f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~------~~~~~~~~  302 (400)
T PF03825_consen  229 FFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS------DPWPFIVA  302 (400)
T ss_pred             HHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc------CCcHHHHH
Confidence            3344455555 6666666543333333343 56889999999999999999998888777666531      122222  


Q ss_pred             --HHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHh-hhhhhHHHHHHHHHhhcCCC-------hhHHHHHHHH
Q 016123          112 --CVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKG-YVGLSTAIFTDLCSALFADD-------PAKFLFMLAI  180 (394)
Q Consensus       112 --~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~-~~glg~~i~~~i~~~~~~~~-------~~~~~~~~~~  180 (394)
                        .+...+-|+..++...+....+.+..|+ .|+++.|+..+ ..|+|+.+.+.+...+++..       ...+..+.++
T Consensus       303 ~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~  382 (400)
T PF03825_consen  303 LQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAV  382 (400)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence              1234568888888888999999999996 59999999766 57999999999988888642       1223333444


Q ss_pred             HHHHHHHhhhhccccc
Q 016123          181 VPFVVCLGAIFFLRET  196 (394)
Q Consensus       181 ~~~~v~~~~~~~~~~~  196 (394)
                      +..++.++.+++.|++
T Consensus       383 ~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  383 MALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHhhccCC
Confidence            4444444444444543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.43  E-value=1.8e-06  Score=85.30  Aligned_cols=152  Identities=12%  Similarity=0.052  Sum_probs=113.4

Q ss_pred             HHHHHHcC----CChhhhHH-HHHHHHhhhhhhhhhHhhhhc-cCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHH
Q 016123           38 DALKTLMN----LTQLELNN-LSVVKDIGKAFGLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM  111 (394)
Q Consensus        38 ~~l~~~~g----~s~~~~~~-~~~~~~~~~~~~~~~G~l~Dr-~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l  111 (394)
                      -++..+++    ++++++.- ++....+......++||+.|| .|+|+++..|++++.+|+++++...   .  .....+
T Consensus        46 ~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~---~--~~~~gl  120 (498)
T COG3104          46 LYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---V--SGPGGL  120 (498)
T ss_pred             HHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---c--ccccHH
Confidence            33555555    99888766 444444444557899999999 6999999999999999999987531   0  134466


Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHHhccc---CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 016123          112 CVFLCMGGNSTTWMNTAVLVTCIRNFRR---NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG  188 (394)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp~---~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~  188 (394)
                      ++...+.++|.|+.-......+.+.+|+   ||=.+.++...+..+|+.+.+.+...+-+...+..-+-++.+.....++
T Consensus       121 ~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~  200 (498)
T COG3104         121 YIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLV  200 (498)
T ss_pred             HHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence            7776777799998877777888899973   4778888888899999888888877776665666666677766666666


Q ss_pred             hhhccc
Q 016123          189 AIFFLR  194 (394)
Q Consensus       189 ~~~~~~  194 (394)
                      ..++.|
T Consensus       201 ~f~~~~  206 (498)
T COG3104         201 IFLLGR  206 (498)
T ss_pred             HHHHcc
Confidence            665555

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.40  E-value=2.9e-05  Score=76.76  Aligned_cols=59  Identities=19%  Similarity=0.134  Sum_probs=42.4

Q ss_pred             cHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccC-chHHHHHHHHHHHHHHHH
Q 016123           36 YSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIP-APIILLIGSLEGLVGYGA   94 (394)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G-~r~~~~~g~~~~~~g~~~   94 (394)
                      |.+.+-++.|+|..|++.+.+...+..++ .++.|.+.||++ +|+.+.+..++.++....
T Consensus        24 ~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~   84 (400)
T PF03825_consen   24 YLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL   84 (400)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence            34445677899999999987777777765 689999999986 456665655555554433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.39  E-value=1.4e-05  Score=78.82  Aligned_cols=121  Identities=15%  Similarity=-0.028  Sum_probs=87.7

Q ss_pred             HHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 016123           40 LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (394)
Q Consensus        40 l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (394)
                      +++.+|.+..+.+++.....++... +++.+++.||+++|+++..+. +.++........       ++.+...+..++.
T Consensus       232 ~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~-------~~~~~~~~~~~~~  303 (393)
T PRK11195        232 APVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ-------HSLLPAYPLLILI  303 (393)
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH-------hHHHHHHHHHHHH
Confidence            5778899999999977777777765 789999999999999888775 333333332221       2455455566677


Q ss_pred             hhhhhhhhhhHHHHHHHhcccC--CCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          119 GNSTTWMNTAVLVTCIRNFRRN--RGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp~~--RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      |++.+....+..+..++.-|++  +|.+.++.+....++..+...+......
T Consensus       304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~  355 (393)
T PRK11195        304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVK  355 (393)
T ss_pred             HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            8888776666666677766653  6999999999988888888877765543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.39  E-value=1.3e-05  Score=81.00  Aligned_cols=130  Identities=15%  Similarity=0.082  Sum_probs=94.2

Q ss_pred             HHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCch--HHHHHHHHHHHH-HHHHHH-HHHHhccCCchHHHHH
Q 016123           38 DALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAP--IILLIGSLEGLV-GYGAQW-LVVSRKIQPLSYWQMC  112 (394)
Q Consensus        38 ~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r--~~~~~g~~~~~~-g~~~~~-~~~~~~~~~~~~~~l~  112 (394)
                      ..-++++|++..++..+.....+..+. +.+.|++.||+|+|  +++.++.++..+ ....+. +. .......+.|.++
T Consensus       306 i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~-~~~~g~~~~~~f~  384 (477)
T PF11700_consen  306 IYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFW-PSFFGLKSPWEFW  384 (477)
T ss_pred             HHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhh-hcccCcccHHHHH
Confidence            335779999999988876666666654 78999999999999  888777776633 222211 11 1111113567888


Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          113 VFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      +..++.|+..|..+..+-++.++.-|+ +.+.-.|+.....-.++.+.|.++..+.+
T Consensus       385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~  441 (477)
T PF11700_consen  385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITD  441 (477)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888899999999888888899999995 78999999887666666666666665554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.37  E-value=6e-06  Score=82.19  Aligned_cols=146  Identities=14%  Similarity=0.101  Sum_probs=96.2

Q ss_pred             ChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhh
Q 016123           47 TQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWM  125 (394)
Q Consensus        47 s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~  125 (394)
                      +..+.+++.....++.+. .++.|++.||+|+|+++.++.++..+++....+..      .+.+.+++..++.|++.+..
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~  328 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG------SNLPLILVLIILAGFGQNFV  328 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc------hhHHHHHHHHHHHHHHHHHH
Confidence            344555554444555544 78999999999999999999988888877665421      23455555666777777776


Q ss_pred             hhhHHHHHHHhcc--------cCCCchHHHHHhhhhhhHHHHHHHHHhhcCC-----C-------hhHHHHHHHHHHHHH
Q 016123          126 NTAVLVTCIRNFR--------RNRGPVSGILKGYVGLSTAIFTDLCSALFAD-----D-------PAKFLFMLAIVPFVV  185 (394)
Q Consensus       126 ~~~~~~~~~~~Fp--------~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~-----~-------~~~~~~~~~~~~~~v  185 (394)
                      ........++..|        +++|.+.|+.+....+|..+.+.+...+++.     +       ....-.....+|.+.
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~~~~~~~~~~p~i~  408 (437)
T TIGR00792       329 TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITLNGIKILMFAVPALF  408 (437)
T ss_pred             HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHHHHHHHHHHHHHHHH
Confidence            6666666665543        3479999999888888888888777766531     1       023344455566666


Q ss_pred             HHhhhhccc-ccCC
Q 016123          186 CLGAIFFLR-ETTP  198 (394)
Q Consensus       186 ~~~~~~~~~-~~p~  198 (394)
                      .+++.+++. ..|.
T Consensus       409 ~~~~~~~~~~~y~l  422 (437)
T TIGR00792       409 LLLAAIIIGRFYKL  422 (437)
T ss_pred             HHHHHHHHHHHeeC
Confidence            666655553 4443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11462 putative transporter; Provisional

Probab=98.34  E-value=1.5e-05  Score=80.41  Aligned_cols=124  Identities=10%  Similarity=-0.106  Sum_probs=79.5

Q ss_pred             HHHHHcCCChhhhHHHHHHHHh-hhhhhhhhHhhhhc----cCchHHH-HHHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 016123           39 ALKTLMNLTQLELNNLSVVKDI-GKAFGLLAGLASDR----IPAPIIL-LIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (394)
Q Consensus        39 ~l~~~~g~s~~~~~~~~~~~~~-~~~~~~~~G~l~Dr----~G~r~~~-~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~  112 (394)
                      .+.+..|++...++.+....-+ -.+.-|+.|.++||    +||||.. ++|.+.++++..+++... +.........++
T Consensus        35 fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p-~~s~~~~~~y~~  113 (460)
T PRK11462         35 FYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP-DLSMNGKMIYAA  113 (460)
T ss_pred             HHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC-CCCcchHHHHHH
Confidence            3578899999999985444433 34557999999997    6887655 467778887776654321 111111122233


Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHhcc--cCCCchHHHHHhhhhhhHHHHHHHH
Q 016123          113 VFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLC  163 (394)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gl~~~~~glg~~i~~~i~  163 (394)
                      +..++..++..+..++..+...+.-+  ++|....+.-..+..+|+.+.+.+.
T Consensus       114 ~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~  166 (460)
T PRK11462        114 ITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM  166 (460)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444566666666666666666665  5799999998888777766665443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.34  E-value=8.9e-06  Score=91.15  Aligned_cols=132  Identities=13%  Similarity=-0.056  Sum_probs=95.6

Q ss_pred             cHHH-HHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHh------------
Q 016123           36 YSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSR------------  101 (394)
Q Consensus        36 ~~~~-l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~------------  101 (394)
                      +.|. +++.+|.+..+.+++.+...++.+. +++.|++.||.++++.+..+.++.+++.+.+.+....            
T Consensus       247 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  326 (1140)
T PRK06814        247 QLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSIL  326 (1140)
T ss_pred             HhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchh
Confidence            4454 4667899999999977777777765 7899999999888887777766665555433321000            


Q ss_pred             -ccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          102 -KIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       102 -~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                       .....+.|.+++..++.|++.++...+..+.+++.+|+ +||+++|+.+....+|..+.+.+...+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        327 VFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             hhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence             00002455666667778888888777778888999985 6999999999988888888887776665

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.32  E-value=4.5e-06  Score=80.00  Aligned_cols=125  Identities=20%  Similarity=0.111  Sum_probs=92.3

Q ss_pred             cchhcHHHH-HHHcCCC-hhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123           32 TFSNYSDAL-KTLMNLT-QLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (394)
Q Consensus        32 ~~~~~~~~l-~~~~g~s-~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  108 (394)
                      .+..+.|.+ ++++|++ ..+.+.+.....+... ..++.|++.||+|+|+...+......++..........    .+.
T Consensus       224 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  299 (352)
T PF07690_consen  224 GFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS----SSP  299 (352)
T ss_dssp             HHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH----CHH
T ss_pred             HhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh----hhH
Confidence            355667775 8899999 7888875555555554 58899999999999888888777776666554432111    123


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHH
Q 016123          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFT  160 (394)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~  160 (394)
                      +......++.|++.+..+........+.+| ++||++.|+.....++|+.+.|
T Consensus       300 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  300 VWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            344445667788888877888888999998 5699999999999999988765

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.31  E-value=6.1e-06  Score=81.99  Aligned_cols=133  Identities=11%  Similarity=0.050  Sum_probs=80.9

Q ss_pred             cccchhcHHHHHHHc--CCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHH-HHHHHHHHHHHHHHHHHHHHhccCC
Q 016123           30 NYTFSNYSDALKTLM--NLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPII-LLIGSLEGLVGYGAQWLVVSRKIQP  105 (394)
Q Consensus        30 ~y~~~~~~~~l~~~~--g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~-~~~g~~~~~~g~~~~~~~~~~~~~~  105 (394)
                      .+.+..+.|++.+++  +.+..+.+.+.....++... .++.|++.||+++|+. +....++.++++.+. .. .   . 
T Consensus       258 ~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~-~~-~---~-  331 (412)
T TIGR02332       258 LSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA-SA-T---D-  331 (412)
T ss_pred             HHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH-Hh-c---C-
Confidence            456667788876664  66777777766666666654 7899999999998775 344444444443222 11 1   1 


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (394)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~  169 (394)
                      .+... ....++.++|.............+.+| ++||++.|+.+....+|+++.+.+...+.+.
T Consensus       332 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~  395 (412)
T TIGR02332       332 HNLIQ-LLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDA  395 (412)
T ss_pred             CHHHH-HHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccccc
Confidence            12211 111122222322211222233346677 5799999999999999999999888777764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.30  E-value=1.2e-05  Score=77.92  Aligned_cols=148  Identities=13%  Similarity=0.103  Sum_probs=100.0

Q ss_pred             HHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHh
Q 016123           41 KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG  119 (394)
Q Consensus        41 ~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G  119 (394)
                      ++++||+..++..+.....+..+ .+++.|+|.||+|.|+++.++.+++.+..+..-+.  .     ....+.++..+.|
T Consensus       280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~--~-----~~~~f~i~gll~g  352 (438)
T COG2270         280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL--E-----GELDFWILGLLVG  352 (438)
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--c-----ccHHHHHHHHHHH
Confidence            56999999999998777777776 48999999999999999999998887655543322  1     1223445667788


Q ss_pred             hhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHhhhhccccc
Q 016123          120 NSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA--DDPAKFLFMLAIVPFVVCLGAIFFLRET  196 (394)
Q Consensus       120 ~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~  196 (394)
                      ...|.....+=.+..|..|+ |-|...|+....--.++.+.+.+...+.+  ++.+.-+..+ ++...+.++..+.+|.+
T Consensus       353 ~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i-~vll~iGl~~L~~v~~~  431 (438)
T COG2270         353 TSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSI-IVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHhhHhhEEeecCC
Confidence            88888887888899999995 68999999877544554444444443332  2323223332 23344445555555544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.30  E-value=6.3e-05  Score=76.04  Aligned_cols=71  Identities=14%  Similarity=0.228  Sum_probs=53.5

Q ss_pred             chHHHHhhchhHHHHHHHHHhcccceeeeeeChHHHHH-HhCCCcc--hhhHHHHHHHHHHhhhhhccccchhc
Q 016123          323 HTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGL-ALGYVDV--SIFVSLTSIWGFFGRIISGSVSEYFI  393 (394)
Q Consensus       323 ~t~~~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~-~~G~~~~--a~~vsl~si~~~~GRl~~G~lsD~~~  393 (394)
                      .+++++.|.|+...+.++.++-.-....++.....+.+ .+|+++.  ....-+..+.+++|-+++|++.||+|
T Consensus       272 ~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g  345 (477)
T PF11700_consen  272 RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFG  345 (477)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            57788888898888888877765444455555555555 5788753  34555678999999999999999987

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.30  E-value=1.4e-05  Score=78.98  Aligned_cols=128  Identities=14%  Similarity=-0.023  Sum_probs=86.1

Q ss_pred             hcHHHHHHHcCCChhhhHHHHHHHHhhh-hhhhhhHhhh-hccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHH
Q 016123           35 NYSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLAS-DRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMC  112 (394)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~-~~~~~~G~l~-Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~  112 (394)
                      .+.|.+.++.+.++.+.+++.....++. ....+.+++. ||++.|+.+..+.++.+++..++...       ++.+.+.
T Consensus       229 ~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~  301 (400)
T PRK11646        229 LMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-------SNLQQLF  301 (400)
T ss_pred             HhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-------hhHHHHH
Confidence            3456654554446677777544443333 3444445554 56777877788888887777665443       2344444


Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123          113 VFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (394)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~  169 (394)
                      +..++.++|.+...+.....+.+..| ++||++.|+.....++|+.+.+.+...+.+.
T Consensus       302 ~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        302 TLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            45566677776665566677788888 5799999999999999999998888887754

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.28  E-value=3.4e-06  Score=81.68  Aligned_cols=121  Identities=21%  Similarity=0.144  Sum_probs=77.5

Q ss_pred             cchhcHHH-HHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           32 TFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        32 ~~~~~~~~-l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      .+..+.|. +++.+|++..+.+.+.....+... ..++.|++.||+|+|+.+..+......+..+........   .+.+
T Consensus       243 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  319 (366)
T TIGR00886       243 GVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSP---LSLA  319 (366)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCc---chHH
Confidence            34444444 467789999999876555555554 478999999999999988888777766665554321100   0333


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhh
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLS  155 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg  155 (394)
                      .......+.+++.|..+........+.+|++||.+.|+..+...+|
T Consensus       320 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       320 VFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence            3322223333333444444556677788999999999988766554

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.25  E-value=6.3e-06  Score=80.92  Aligned_cols=128  Identities=11%  Similarity=0.127  Sum_probs=101.1

Q ss_pred             hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccC-CCc
Q 016123           65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGP  143 (394)
Q Consensus        65 ~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~  143 (394)
                      ..++.++.+|+|+|+.++++...+++=...++++       ++.+.+.+...+-|+-.++...+..+++++.||+| ..+
T Consensus       276 m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~-------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt  348 (412)
T PF01306_consen  276 MFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA-------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSAT  348 (412)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHH
T ss_pred             HHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHH
Confidence            5689999999999999999999998877776654       46777888899999988888899999999999976 566


Q ss_pred             hHHHH-HhhhhhhHHHHHHHHHhhcCCCh-hHHHHHHHHHHHHHHHhhhhcccccCCC
Q 016123          144 VSGIL-KGYVGLSTAIFTDLCSALFADDP-AKFLFMLAIVPFVVCLGAIFFLRETTPA  199 (394)
Q Consensus       144 a~gl~-~~~~glg~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~p~~  199 (394)
                      +-.+. +...++|..+++++...+.+.-+ ...++.++.+.....++..+.++..++.
T Consensus       349 ~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  349 LYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            66664 56789999999999999988644 4567778888888888888888766554

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.24  E-value=2.4e-05  Score=76.82  Aligned_cols=123  Identities=17%  Similarity=0.073  Sum_probs=63.8

Q ss_pred             HHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHH--HHHHHHHH-HHHHhccCCchHHHHHHHH
Q 016123           40 LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEG--LVGYGAQW-LVVSRKIQPLSYWQMCVFL  115 (394)
Q Consensus        40 l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~--~~g~~~~~-~~~~~~~~~~~~~~l~~~~  115 (394)
                      ++++-|+|.+|++.+.++..+..+ .+|+.|.+.||+|.||-++......  ..+-+..+ +...-+   .+.   .+..
T Consensus        34 L~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~---~n~---~lg~  107 (412)
T PF01306_consen   34 LTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQ---SNF---WLGA  107 (412)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHH---TT----HHHH
T ss_pred             HccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---HHHH
Confidence            567799999999997776666665 5899999999999877655433222  22222221 110000   121   2233


Q ss_pred             HHHhhhhhhhhhhHHHHHH---HhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          116 CMGGNSTTWMNTAVLVTCI---RNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       116 ~l~G~g~g~~~~~~~~~~~---~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      ++.|+-.++.+.+......   +-+.++.+.=-|=.-+.-++|.++.+.+...+++
T Consensus       108 iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~  163 (412)
T PF01306_consen  108 IIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFN  163 (412)
T ss_dssp             HHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeee
Confidence            3444444444433333322   2223344555555555556666666666665553

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.24  E-value=2.7e-05  Score=74.37  Aligned_cols=81  Identities=19%  Similarity=0.157  Sum_probs=65.9

Q ss_pred             HHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 016123           40 LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (394)
Q Consensus        40 l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (394)
                      +-+++|++..|++.+...+..... ++++.|.+.||+|||+..++-.+++++..+...        +++++.+.+.|++.
T Consensus        60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~--------~~~~~~L~~GRvlg  131 (354)
T PF05631_consen   60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH--------SSNYPVLLLGRVLG  131 (354)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh--------ccccHHHHHHHHHH
Confidence            445799999999997666666654 699999999999999999998888888776431        14688899999999


Q ss_pred             hhhhhhhhhh
Q 016123          119 GNSTTWMNTA  128 (394)
Q Consensus       119 G~g~g~~~~~  128 (394)
                      |++..+.+.+
T Consensus       132 GiaTSLLfS~  141 (354)
T PF05631_consen  132 GIATSLLFSA  141 (354)
T ss_pred             HHHHHHHHHH
Confidence            9999887653

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.23  E-value=1.1e-05  Score=77.95  Aligned_cols=132  Identities=14%  Similarity=0.053  Sum_probs=79.3

Q ss_pred             cchhcHHH-HHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHH---HHHHHHHHHHHHhccCCc
Q 016123           32 TFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG---LVGYGAQWLVVSRKIQPL  106 (394)
Q Consensus        32 ~~~~~~~~-l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~---~~g~~~~~~~~~~~~~~~  106 (394)
                      .+..+.|. +++++|++..+.+.+.....++... .++.|++.||...|+.........   .++......   .  +..
T Consensus       234 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~  308 (379)
T TIGR00881       234 GILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL---N--PAA  308 (379)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc---C--cch
Confidence            33444555 4677899999998866666666654 789999999864333222222211   122221111   0  011


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      +.+...+..++.|...............+.+| ++||++.|+......+|+.+.+.+...+.+
T Consensus       309 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  371 (379)
T TIGR00881       309 NPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD  371 (379)
T ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence            33333344444554333333334456778898 469999999999999999988888777665

>PRK09848 glucuronide transporter; Provisional

Probab=98.23  E-value=1.2e-05  Score=80.80  Aligned_cols=153  Identities=19%  Similarity=0.088  Sum_probs=101.1

Q ss_pred             HHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHh
Q 016123           41 KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG  119 (394)
Q Consensus        41 ~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G  119 (394)
                      ++.+|.+.....+......++.. ..++.+++.||+|+|+++.+|.++..+++..+.+.  .   ..+.+.+++..++.|
T Consensus       256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~--~---~~~~~~~~~~~~l~g  330 (448)
T PRK09848        256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV--S---VWSLPVALVALAIAS  330 (448)
T ss_pred             eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--C---chhHHHHHHHHHHHH
Confidence            55677766544444443344444 47899999999999999999999888887766542  1   124565555667788


Q ss_pred             hhhhhhhhhHHHHHHHhcc--------cCCCchHHHHHhhhhhhHHHHHHHHHhhcC-----CC---h----hHHHHHHH
Q 016123          120 NSTTWMNTAVLVTCIRNFR--------RNRGPVSGILKGYVGLSTAIFTDLCSALFA-----DD---P----AKFLFMLA  179 (394)
Q Consensus       120 ~g~g~~~~~~~~~~~~~Fp--------~~RG~a~gl~~~~~glg~~i~~~i~~~~~~-----~~---~----~~~~~~~~  179 (394)
                      +|.+..........++.-|        +++|...|+......+|.++.+.+...++.     .+   .    ...-....
T Consensus       331 ~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~~~~~~~~i~~~~~  410 (448)
T PRK09848        331 IGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQTPEVIMGIRTSIA  410 (448)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHHH
Confidence            8888776666666666554        135899999888888888887776655432     11   1    23344455


Q ss_pred             HHHHHHHHhhhhcccccCC
Q 016123          180 IVPFVVCLGAIFFLRETTP  198 (394)
Q Consensus       180 ~~~~~v~~~~~~~~~~~p~  198 (394)
                      .+|++..+++.++++..|-
T Consensus       411 ~~p~~~~~~~~~~~~~y~l  429 (448)
T PRK09848        411 LVPCGFMLLAFVIIWFYPL  429 (448)
T ss_pred             HHHHHHHHHHHHHHHHeeC
Confidence            6677766666666654443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.22  E-value=6.4e-05  Score=73.58  Aligned_cols=141  Identities=11%  Similarity=0.056  Sum_probs=80.5

Q ss_pred             ccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhhhhhhHhhhhccCc---hHHHHH-HHHHHHHHHHHHHHHHHhccC
Q 016123           29 NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIPA---PIILLI-GSLEGLVGYGAQWLVVSRKIQ  104 (394)
Q Consensus        29 ~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G~---r~~~~~-g~~~~~~g~~~~~~~~~~~~~  104 (394)
                      ..|.+..+.|++-++.|++.. .+.......+...  +..+++.||..|   |+.... ..++.++........      
T Consensus       207 ~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~--~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~------  277 (368)
T TIGR00903       207 LFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGL--IGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE------  277 (368)
T ss_pred             HHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHH--HHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc------
Confidence            346666788888777888864 4443332222222  234677777654   343332 333333333332211      


Q ss_pred             CchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHH
Q 016123          105 PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAI  180 (394)
Q Consensus       105 ~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~  180 (394)
                       .+.+...+...+.++.....+.......++.+|+ .||+++|+......+|+...+++...++. +....+.+.++
T Consensus       278 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~  352 (368)
T TIGR00903       278 -LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAI  352 (368)
T ss_pred             -cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence             1222223333445554444444455678899996 69999999999889999888888877763 33344444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.17  E-value=5.7e-05  Score=69.62  Aligned_cols=149  Identities=13%  Similarity=0.116  Sum_probs=101.3

Q ss_pred             CCcHHHHHHHHHHHHHhcccccchhcHHHHHHHcCCChhhhHHH-HHHHHhhhhhhhhhHhhhhccCchHHHHHHHHHHH
Q 016123           11 AGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNL-SVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGL   89 (394)
Q Consensus        11 ~~~w~~l~~~~~~~~~~g~~y~~~~~~~~l~~~~g~s~~~~~~~-~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~   89 (394)
                      ..-|++++.+++-....-..++.+-  --++++||+|+.+.+.+ ++...+....+|+.|.+.||+|++...+.+..+..
T Consensus       264 ppfw~~~iicv~yyva~fPFi~lg~--~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~t  341 (459)
T KOG4686|consen  264 PPFWVLVIICVLYYVAWFPFITLGP--MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILT  341 (459)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhH--HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHH
Confidence            3458777777665433222232221  12689999999999885 55555555679999999999999998877766554


Q ss_pred             -HHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123           90 -VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus        90 -~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                       ++.....+..         +.=+....+.|++..+.-.+.+..++..-|+ +-|++-|..+.-..+|-++.+.+...+.
T Consensus       342 l~~H~~l~Ft~---------lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~  412 (459)
T KOG4686|consen  342 LLGHSGLFFTF---------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIA  412 (459)
T ss_pred             HHHhhhHHhhh---------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheee
Confidence             4555444332         1123345566776665544456778888896 6999999999999999888887776666


Q ss_pred             CCC
Q 016123          168 ADD  170 (394)
Q Consensus       168 ~~~  170 (394)
                      +++
T Consensus       413 d~~  415 (459)
T KOG4686|consen  413 DGD  415 (459)
T ss_pred             cCC
Confidence            553

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.17  E-value=4.9e-05  Score=75.87  Aligned_cols=187  Identities=14%  Similarity=0.131  Sum_probs=117.8

Q ss_pred             CCCcHHHHHHHHHHHHHhccccc-c-hhcHHHHHH-HcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCc-hHHHHHH
Q 016123           10 SAGKWLGFVTAVWVQAISGNNYT-F-SNYSDALKT-LMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPA-PIILLIG   84 (394)
Q Consensus        10 ~~~~w~~l~~~~~~~~~~g~~y~-~-~~~~~~l~~-~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~-r~~~~~g   84 (394)
                      .+.+|+.+..+.+.++..+..++ + ...-|++++ +.+-+.+..|++..+..++.. .++..|+...|.+. |+.++.|
T Consensus        29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s  108 (488)
T KOG2325|consen   29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS  108 (488)
T ss_pred             cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH
Confidence            45788877777766655443221 1 122243433 366777788887777777775 58999999999886 8888899


Q ss_pred             HHHHHHHHHHH-HHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHH-HhcccCCCchHHHHHhhhhhhHHHHHHH
Q 016123           85 SLEGLVGYGAQ-WLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCI-RNFRRNRGPVSGILKGYVGLSTAIFTDL  162 (394)
Q Consensus        85 ~~~~~~g~~~~-~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~-~~Fp~~RG~a~gl~~~~~glg~~i~~~i  162 (394)
                      .+...+|.++. ++...   ++...|.+.+.|++.|+|.+..- ..=++++ ...+++|-+|.+....++-+|..+++.+
T Consensus       109 ~ii~~~g~llY~~l~~~---~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~  184 (488)
T KOG2325|consen  109 FLIAIIGNLLYLALAYV---PNGVKYLMLVARILTGVGVGNFA-VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI  184 (488)
T ss_pred             HHHHHHHHHHHHHHHhc---ccchHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH
Confidence            99999999887 33322   21246667779999999977542 2333333 5678888888888888777776665544


Q ss_pred             HHhhcC---C----------ChhH-HHHHHHHHHHHHHHhhhhcccccCCCC
Q 016123          163 CSALFA---D----------DPAK-FLFMLAIVPFVVCLGAIFFLRETTPAS  200 (394)
Q Consensus       163 ~~~~~~---~----------~~~~-~~~~~~~~~~~v~~~~~~~~~~~p~~~  200 (394)
                      ...+-+   .          |.-+ -.++.+++..+-.+...++++|.++..
T Consensus       185 q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  185 QLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             HHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence            333221   1          1111 233333444444455566677777654

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.16  E-value=5.2e-05  Score=77.60  Aligned_cols=153  Identities=14%  Similarity=0.059  Sum_probs=95.4

Q ss_pred             HhcccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccC
Q 016123           26 ISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ  104 (394)
Q Consensus        26 ~~g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~  104 (394)
                      +.|.. ....|.+.+-+..|.+... .+.+....+... ...++..+.||+|||++++.|...+.++.++++........
T Consensus       308 ~tG~~-~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~  385 (513)
T KOG0254|consen  308 LTGIN-YVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALY  385 (513)
T ss_pred             HhCCc-eEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence            44443 4456778887777777543 222222223333 35677899999999999999999999998888765432110


Q ss_pred             ------CchHHHHH-HHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCC--hhHH
Q 016123          105 ------PLSYWQMC-VFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADD--PAKF  174 (394)
Q Consensus       105 ------~~~~~~l~-~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~--~~~~  174 (394)
                            ......+. ...++..+..++. ..+....+|.||. -|+++.++..+...+.+.+....+....+..  ...+
T Consensus       386 ~~~~~~~~~~~~~~~~~~~v~~f~~g~g-~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f  464 (513)
T KOG0254|consen  386 YPNSSKGAGWLAIVFLCLFIFSFAIGWG-PVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTF  464 (513)
T ss_pred             CCCcccchhHHHHHHHHHHHHHHhcccc-cchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence                  00111111 2333444444443 3455688999995 5999999999998888887766665555442  3344


Q ss_pred             HHHHHHH
Q 016123          175 LFMLAIV  181 (394)
Q Consensus       175 ~~~~~~~  181 (394)
                      ..+.++.
T Consensus       465 ~~f~~~~  471 (513)
T KOG0254|consen  465 GYFGGIC  471 (513)
T ss_pred             HHHHHHH
Confidence            4444433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.11  E-value=2.7e-05  Score=79.15  Aligned_cols=136  Identities=7%  Similarity=-0.022  Sum_probs=94.5

Q ss_pred             hhhhhhHhhhhccCchH-------HHHHHHHHHHHHHHHHHHH---HHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHH
Q 016123           63 AFGLLAGLASDRIPAPI-------ILLIGSLEGLVGYGAQWLV---VSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT  132 (394)
Q Consensus        63 ~~~~~~G~l~Dr~G~r~-------~~~~g~~~~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~  132 (394)
                      +++|+.|++.||+++|+       -+.+|.++.+++++..+..   ........++|.+....++.|+|.++..++....
T Consensus       324 i~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~  403 (489)
T PRK10207        324 VASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAM  403 (489)
T ss_pred             HHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            45888999999999997       3777888888777654321   1111011346666667788899999988888899


Q ss_pred             HHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcC-C----------ChhHHHHHHHHHHHHHHHhhhhcccccCC
Q 016123          133 CIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA-D----------DPAKFLFMLAIVPFVVCLGAIFFLRETTP  198 (394)
Q Consensus       133 ~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~-~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~p~  198 (394)
                      +.+..|+ .+|.++|+.....++|+.+...+.+..-. .          +...++..+++...+++++..+..|...+
T Consensus       404 ~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~  481 (489)
T PRK10207        404 IAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNR  481 (489)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999996 59999999999999999988877654421 0          12456666666666666655554444333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.10  E-value=0.00019  Score=71.36  Aligned_cols=166  Identities=10%  Similarity=0.028  Sum_probs=88.1

Q ss_pred             cccchhcHHHH-HHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCch
Q 016123           30 NYTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLS  107 (394)
Q Consensus        30 ~y~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~  107 (394)
                      .+.+..+.|.+ ++.+|++..+.++.......+... +.+.+++.+|.+.++....+..+..+|..+....... .+ ++
T Consensus       234 ~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~-~~-~~  311 (413)
T PRK15403        234 MMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLL-WP-HV  311 (413)
T ss_pred             HHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH-cc-cc
Confidence            34555566654 667799999999865544455544 6777777655444444433333444444433322100 01 23


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc--CCCchHHHHHhhhhhhHHHHHHHHHhhcCC-ChhHHHHHHHHHHHH
Q 016123          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR--NRGPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFV  184 (394)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~--~RG~a~gl~~~~~glg~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~  184 (394)
                      ++..++..++.++|.+...+....  ..++++  .+|++.++.......+..+.+.....+.+. ....+.....+...+
T Consensus       312 ~~~~~~~~~l~~~G~~~~~p~~~~--~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (413)
T PRK15403        312 WLWSVLGTSLYAFGIGLIFPTLFR--FTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGVI  389 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH--HHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            333344566677777765433332  235543  489999988877766666666666555443 223333333333333


Q ss_pred             HHHhhhhcccccCCC
Q 016123          185 VCLGAIFFLRETTPA  199 (394)
Q Consensus       185 v~~~~~~~~~~~p~~  199 (394)
                      .........|.+|.+
T Consensus       390 ~~~~~~~~~~~~~~~  404 (413)
T PRK15403        390 VVFTLAGLLNRVRQH  404 (413)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            333333444444443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.10  E-value=5.6e-07  Score=92.16  Aligned_cols=125  Identities=21%  Similarity=0.101  Sum_probs=2.7

Q ss_pred             hcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHH--Hh-------c--
Q 016123           35 NYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVV--SR-------K--  102 (394)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~--~~-------~--  102 (394)
                      .-.+.++++|+++.++.+++.+...++..+ .++..++.+|..|-+.+-+|.+++++|.+++++=.  .+       .  
T Consensus        24 ~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~  103 (539)
T PF03137_consen   24 SSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNS  103 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccc
Confidence            345679999999999999999999999865 77888999988888888899999999998876410  00       0  


Q ss_pred             ------------------------------cCCch--HHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHH
Q 016123          103 ------------------------------IQPLS--YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILK  149 (394)
Q Consensus       103 ------------------------------~~~~~--~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~  149 (394)
                                                    ..+.+  ++.+++..++.|+|....|+...+++=++-++ +-+.-.|+..
T Consensus       104 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~  183 (539)
T PF03137_consen  104 NGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILY  183 (539)
T ss_dssp             ------------------------------------------------SSS-----------------------------
T ss_pred             ccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhh
Confidence                                          00001  22334567888888888888888888888864 5777777777


Q ss_pred             hhhhhhHHHH
Q 016123          150 GYVGLSTAIF  159 (394)
Q Consensus       150 ~~~glg~~i~  159 (394)
                      +...+|.++.
T Consensus       184 ~~~~lGPa~G  193 (539)
T PF03137_consen  184 AMSILGPALG  193 (539)
T ss_dssp             ----------
T ss_pred             HHhhccHHHH
Confidence            7666665544

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.04  E-value=1.1e-05  Score=76.88  Aligned_cols=126  Identities=10%  Similarity=-0.000  Sum_probs=85.4

Q ss_pred             hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCc
Q 016123           65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGP  143 (394)
Q Consensus        65 ~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~  143 (394)
                      .++.++++||+|||++|....+++++..++...+....   .-..+++.+|++...+    +.+.+.+..+.||. -|++
T Consensus       398 lLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn---~~tvllf~arafisg~----fqvaYvYtPEVyPTavRat  470 (528)
T KOG0253|consen  398 LLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN---AYTVLLFTARAFISGA----FQVAYVYTPEVYPTAVRAT  470 (528)
T ss_pred             hhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc---hhHHHHHHHHHHHhch----heEEEEecCcccchhhhhc
Confidence            57899999999999999999999988887776553211   0122344566654333    33445677899996 5999


Q ss_pred             hHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhhcccccCCC
Q 016123          144 VSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLRETTPA  199 (394)
Q Consensus       144 a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~  199 (394)
                      ++|......-+|+.+.|.+.  +..+.......++-....+++.++.+++|..++.
T Consensus       471 gvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkG  524 (528)
T KOG0253|consen  471 GVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKG  524 (528)
T ss_pred             chhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCC
Confidence            99999999999988877766  3333223333444444556666777777766543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.03  E-value=8.7e-05  Score=74.03  Aligned_cols=151  Identities=15%  Similarity=0.183  Sum_probs=100.9

Q ss_pred             HHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHh
Q 016123           41 KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG  119 (394)
Q Consensus        41 ~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G  119 (394)
                      +..+|.+ ...+.+.....+... ..++.+++.||+|+|+++..+.++.+++.+...+...     ++.+.+++..++.|
T Consensus       253 ~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l~g  326 (428)
T PF13347_consen  253 TYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP-----GSPWLVLILFILAG  326 (428)
T ss_pred             HHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhH
Confidence            4445555 445555555555555 4789999999999999999999999999988776521     25677778888899


Q ss_pred             hhhhhhhhhHHHHHHHhcc--------cCCCchHHHHHhhhhhhHHHHHHHHHhhcC-----CC--------hhHHHHHH
Q 016123          120 NSTTWMNTAVLVTCIRNFR--------RNRGPVSGILKGYVGLSTAIFTDLCSALFA-----DD--------PAKFLFML  178 (394)
Q Consensus       120 ~g~g~~~~~~~~~~~~~Fp--------~~RG~a~gl~~~~~glg~~i~~~i~~~~~~-----~~--------~~~~~~~~  178 (394)
                      ++.+..+.....+.++..+        ++.|...|+.....-++..+.+.+...+++     .+        ....-...
T Consensus       327 i~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~~~q~~~~~~~i~~~~  406 (428)
T PF13347_consen  327 IGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANAAVQSASALSGIRILF  406 (428)
T ss_pred             hhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCcCcCCHHHHHHHHHHH
Confidence            9998877777777777664        224777777766666666665555544432     11        12344555


Q ss_pred             HHHHHHHHHhhhhcccccC
Q 016123          179 AIVPFVVCLGAIFFLRETT  197 (394)
Q Consensus       179 ~~~~~~v~~~~~~~~~~~p  197 (394)
                      ..+|++..+++..+++..|
T Consensus       407 ~~~p~~~~~~~~i~~~~y~  425 (428)
T PF13347_consen  407 SIVPAIFLLLAIIFMRFYP  425 (428)
T ss_pred             HHHHHHHHHHHHHHHhhcc
Confidence            5566666666665555444

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.92  E-value=0.00088  Score=65.74  Aligned_cols=157  Identities=15%  Similarity=0.058  Sum_probs=99.3

Q ss_pred             hhcHHHHHHH-cCCChhhhHH-HHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHH
Q 016123           34 SNYSDALKTL-MNLTQLELNN-LSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (394)
Q Consensus        34 ~~~~~~l~~~-~g~s~~~~~~-~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  110 (394)
                      +...|.+.+. .|++..|+.- +.-...-..+ +.++...+.|..|.|++++++.+...+.+.++-+.       ++++.
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~-------~sv~~   96 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG-------TSVLA   96 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------CcHHH
Confidence            3455666665 8999999986 4322222223 36789999999999999999999888877776543       46666


Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHH
Q 016123          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFAD--DPAKFLFMLAIVPFVVCL  187 (394)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~v~~  187 (394)
                      +-+.-+.-|++.+. .++....+=..-| ++--++++...+..-+|-++.+.+.+.++..  ..-..+..+......+++
T Consensus        97 mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~  175 (412)
T PF01770_consen   97 MQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLAL  175 (412)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            66666777766654 2334444433334 4556677777777767777777776666542  223334444555555555


Q ss_pred             hhhhcccccCC
Q 016123          188 GAIFFLRETTP  198 (394)
Q Consensus       188 ~~~~~~~~~p~  198 (394)
                      +..+++|.+++
T Consensus       176 ~~~~fLP~~~~  186 (412)
T PF01770_consen  176 LIALFLPMPKR  186 (412)
T ss_pred             HHHHHcCCCCc
Confidence            55555555444

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=97.88  E-value=7.8e-05  Score=75.44  Aligned_cols=154  Identities=12%  Similarity=-0.029  Sum_probs=105.4

Q ss_pred             HHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhc---cCCchHHHHHHHHHH
Q 016123           42 TLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRK---IQPLSYWQMCVFLCM  117 (394)
Q Consensus        42 ~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~---~~~~~~~~l~~~~~l  117 (394)
                      +.+|+++.+.+.+.....++.+. ....+++.+|++.|+++.++.++.+++...........   ..-++.+.+....++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            56899999999966656666654 78999999999999999999999988775532111000   000122222334567


Q ss_pred             HhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCC------Ch--hHHHHHHHHHHHHHHHh
Q 016123          118 GGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD------DP--AKFLFMLAIVPFVVCLG  188 (394)
Q Consensus       118 ~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~------~~--~~~~~~~~~~~~~v~~~  188 (394)
                      .+++.++.+.+....+++.-|+ ++|+..++..+..++|..+.+.+...+.+.      +.  ......++.++.++.+.
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~  440 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP  440 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence            7778888888888999999985 699999999999999988888654444321      11  22344444555555555


Q ss_pred             hhhcccc
Q 016123          189 AIFFLRE  195 (394)
Q Consensus       189 ~~~~~~~  195 (394)
                      ..+++|+
T Consensus       441 ~~~llP~  447 (468)
T TIGR00788       441 LLHLLPR  447 (468)
T ss_pred             HHHhCCC
Confidence            5566665

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.85  E-value=0.00012  Score=74.44  Aligned_cols=158  Identities=13%  Similarity=0.185  Sum_probs=108.5

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      +...++.|.+.+.++.+..+.+.+.+...+.... -++.|++.|+...|+..+....+...|...+.....     .+++
T Consensus       315 ~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~-----~~~~  389 (509)
T KOG2504|consen  315 NVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA-----TTYV  389 (509)
T ss_pred             HHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh-----ccHH
Confidence            3455678888889999999999966665566555 689999999999655444444444444333322221     4678


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHH
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFAD--DPAKFLFMLAIVPFVVC  186 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~v~  186 (394)
                      .+..+.++.|+..|....-...++.+..+ ++-..+.|+.....+++..+.+|+...+.+.  +....+.+.++. .+++
T Consensus       390 ~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~-~~~s  468 (509)
T KOG2504|consen  390 GLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLC-FLLS  468 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChH-HHHH
Confidence            88888888888888765444457778887 6789999999999999999999999977664  333344444443 3334


Q ss_pred             Hhhhhccc
Q 016123          187 LGAIFFLR  194 (394)
Q Consensus       187 ~~~~~~~~  194 (394)
                      ..++++++
T Consensus       469 ~~~~~~~~  476 (509)
T KOG2504|consen  469 AVLLLILR  476 (509)
T ss_pred             HHHHHHhH
Confidence            44444444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.84  E-value=0.00033  Score=71.48  Aligned_cols=128  Identities=12%  Similarity=0.015  Sum_probs=90.0

Q ss_pred             hhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCc
Q 016123           67 LAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKI--QPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGP  143 (394)
Q Consensus        67 ~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~--~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~  143 (394)
                      ..+++.||+++++.+.+|.++.++|++..........  ...+.+++....++.|+|..+..+.....+.+.-|+ .||+
T Consensus       339 ~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~  418 (500)
T PRK09584        339 IYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGF  418 (500)
T ss_pred             HHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHH
Confidence            4477788888889999999999999988766532100  012355566678889999999888888899999996 6999


Q ss_pred             hHHHHHhhhhhhHHHHHHHHHhhc-C----C------ChhHHHHHHHHHHHHHHHhhhhccc
Q 016123          144 VSGILKGYVGLSTAIFTDLCSALF-A----D------DPAKFLFMLAIVPFVVCLGAIFFLR  194 (394)
Q Consensus       144 a~gl~~~~~glg~~i~~~i~~~~~-~----~------~~~~~~~~~~~~~~~v~~~~~~~~~  194 (394)
                      ++|+......+|+.+...+....- +    +      ....++..++++..+++++.....|
T Consensus       419 ~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~  480 (500)
T PRK09584        419 IMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP  480 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998888888888877765321 1    0      1345666666665555544444433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.83  E-value=0.0017  Score=63.20  Aligned_cols=130  Identities=12%  Similarity=0.041  Sum_probs=88.9

Q ss_pred             HHHHcCCChhhhHHHHHHHHhhhhhhhhhHhhhhccC-----chHHHHH-HHHHHHHHHHHHHHHHHhccC-------Cc
Q 016123           40 LKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIP-----APIILLI-GSLEGLVGYGAQWLVVSRKIQ-------PL  106 (394)
Q Consensus        40 l~~~~g~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G-----~r~~~~~-g~~~~~~g~~~~~~~~~~~~~-------~~  106 (394)
                      +..|++++..-.+.....-.+...+-+..|..+|+.+     ||...++ |.++.+.|..+..++......       ..
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~   85 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF   85 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence            5678888887777655555555556789999999999     7776554 555555555554443211110       11


Q ss_pred             hHHHHH--HHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123          107 SYWQMC--VFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (394)
Q Consensus       107 ~~~~l~--~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~  169 (394)
                      ..+...  +...+.|+|.+...++....+.+.-| ++|+++.++.-...=+|..+.+.+...++++
T Consensus        86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~  151 (403)
T PF03209_consen   86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP  151 (403)
T ss_pred             HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            233222  34567888888888888899998887 5899999999888777777777777777653

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09669 putative symporter YagG; Provisional

Probab=97.83  E-value=0.00037  Score=69.81  Aligned_cols=140  Identities=13%  Similarity=0.078  Sum_probs=83.7

Q ss_pred             HHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHH
Q 016123           54 LSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVT  132 (394)
Q Consensus        54 ~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~  132 (394)
                      +.....+..+. .++.+++.||+|+|+....+.+...++.....+.  .   ..+.+.+++..++.|++.+........+
T Consensus       269 ~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~i~g~~~~~~~~~~~am  343 (444)
T PRK09669        269 FLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI--P---PSNVWLIFALNILFNFIQNLTTPLQWSM  343 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--C---cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444 6788999999999999998877666543332221  1   1345556666678888888777777777


Q ss_pred             HHHhcc-------c-CCCchHHHHHhhhhhhHHHHHHHHHhhcC------C---Ch----hHHHHHHHHHHHHHHHhhhh
Q 016123          133 CIRNFR-------R-NRGPVSGILKGYVGLSTAIFTDLCSALFA------D---DP----AKFLFMLAIVPFVVCLGAIF  191 (394)
Q Consensus       133 ~~~~Fp-------~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~------~---~~----~~~~~~~~~~~~~v~~~~~~  191 (394)
                      +++..+       + +.|...|+......+|.++.+.+...+++      +   ..    ...-.....+|++..+++.+
T Consensus       344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~~  423 (444)
T PRK09669        344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYVGGAAVQSASVLTTINLLFTVIPGVLFAGMAI  423 (444)
T ss_pred             HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777664       1 23556666654445555555444444331      1   11    23345556677777777776


Q ss_pred             cccccCC
Q 016123          192 FLRETTP  198 (394)
Q Consensus       192 ~~~~~p~  198 (394)
                      ++...|-
T Consensus       424 ~~~~y~l  430 (444)
T PRK09669        424 ILNFYKL  430 (444)
T ss_pred             HHHhccC
Confidence            6655553

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.77  E-value=0.0004  Score=70.28  Aligned_cols=119  Identities=8%  Similarity=-0.058  Sum_probs=72.7

Q ss_pred             ChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhh
Q 016123           47 TQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWM  125 (394)
Q Consensus        47 s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~  125 (394)
                      +....+.+.....+..+ ..++.+++.||+|+|+++.++.++..++.+.......  .+..+.+.+.+..++.|++.+..
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~l~g~~~~~~  341 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL--AAPHNALLIVIAGILLNIGTALF  341 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc--cCchhHHHHHHHHHHHHHHHHHH
Confidence            34444444444434444 4788999999999999999888877666655433210  01124555555667777888777


Q ss_pred             hhhHHHHHHHhcc-------c-CCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          126 NTAVLVTCIRNFR-------R-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       126 ~~~~~~~~~~~Fp-------~-~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      ......++++.-+       + +.|...|......-+|.++.+.+...++
T Consensus       342 ~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l  391 (473)
T PRK10429        342 WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL  391 (473)
T ss_pred             HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666677776633       1 2355677766655566666555554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.73  E-value=0.00054  Score=66.72  Aligned_cols=72  Identities=18%  Similarity=0.209  Sum_probs=51.8

Q ss_pred             cchHHHHhhchhHHHHHHHHHhcccceeeeeeChHHHHH-HhCCCcch--hhHHHHHHHHHHhhhhhccccchhc
Q 016123          322 DHTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGL-ALGYVDVS--IFVSLTSIWGFFGRIISGSVSEYFI  393 (394)
Q Consensus       322 ~~t~~~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~-~~G~~~~a--~~vsl~si~~~~GRl~~G~lsD~~~  393 (394)
                      ..|+||..+.++.-+..++.++..-....++.-.+.++. ++|.++..  .+....++....|-++.|++.||++
T Consensus       242 ~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg  316 (438)
T COG2270         242 KSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFG  316 (438)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            357888888887776666666554444455555566666 67877533  5666678899999999999999986

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.72  E-value=0.00064  Score=68.91  Aligned_cols=127  Identities=9%  Similarity=-0.038  Sum_probs=90.5

Q ss_pred             hHhhhhc-cCchHHH--HHHHHHHHHHHHHHHHHHH--hccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CC
Q 016123           68 AGLASDR-IPAPIIL--LIGSLEGLVGYGAQWLVVS--RKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NR  141 (394)
Q Consensus        68 ~G~l~Dr-~G~r~~~--~~g~~~~~~g~~~~~~~~~--~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~R  141 (394)
                      ..++.|| .+++...  .+|.++.++++..+.+...  +.....++|++....++.++|..+..+.......+.-|+ .|
T Consensus       336 ~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~  415 (475)
T TIGR00924       336 WTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLM  415 (475)
T ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH
Confidence            3455665 4455544  7889888888887764311  000013677777788899999998888888889999986 69


Q ss_pred             CchHHHHHhhhhhhHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHhhhhccc
Q 016123          142 GPVSGILKGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVCLGAIFFLR  194 (394)
Q Consensus       142 G~a~gl~~~~~glg~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~  194 (394)
                      |+.+|+.....++|..+.+.+....... +...++..+++...++.++..++.|
T Consensus       416 g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       416 GQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998887765443 3455667777666666666655444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.67  E-value=0.00057  Score=66.54  Aligned_cols=135  Identities=16%  Similarity=0.122  Sum_probs=83.0

Q ss_pred             cccchhcHHH-HHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhcc--CchHHHH-HHHHHHHHHHHHHHHHHHhccC
Q 016123           30 NYTFSNYSDA-LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRI--PAPIILL-IGSLEGLVGYGAQWLVVSRKIQ  104 (394)
Q Consensus        30 ~y~~~~~~~~-l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~--G~r~~~~-~g~~~~~~g~~~~~~~~~~~~~  104 (394)
                      .|+..-+.|- +.|+.|+|..+.++..+..-++.+. ++++|+++||+  |+|..+- +..+...++...++..     +
T Consensus       268 R~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~-----~  342 (448)
T COG2271         268 RYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA-----P  342 (448)
T ss_pred             HHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC-----C
Confidence            3444455554 5788999999999977777777765 78999999995  6776554 3344444555544432     1


Q ss_pred             CchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccC-CCchHHHHHhhhhh-hHHHHHHHHHhhcCC
Q 016123          105 PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGL-STAIFTDLCSALFAD  169 (394)
Q Consensus       105 ~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gl~~~~~gl-g~~i~~~i~~~~~~~  169 (394)
                      +.++++..+..++.|+-.-.-....-....+.-||+ -|+|.|+.-.+..+ |++........+.+.
T Consensus       343 ~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~  409 (448)
T COG2271         343 NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT  409 (448)
T ss_pred             CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence            134555555555555433211111112334555875 99999999888888 555555555445454

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.59  E-value=0.0012  Score=66.22  Aligned_cols=158  Identities=22%  Similarity=0.251  Sum_probs=107.3

Q ss_pred             hcHHHHHHHcCCChhhhHHHHHHHHhhhhhhhhhHhhhhccC-----chHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           35 NYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASDRIP-----APIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G-----~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      ...+.+++++|++++|...+.....+....-|+.|.+.|-+.     ||+-++++.++..++...++... ...  .+..
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~-~~~--~s~~   87 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP-ASE--SSAA   87 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc-ccc--chhh
Confidence            345668999999999999988877777788999999999974     55566777777766555554431 111  2344


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhc---ccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHH
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNF---RRNRGPVSGILKGYVGLSTAIFTDLCSALFADD-PAKFLFMLAIVPFVV  185 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~F---p~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~-~~~~~~~~~~~~~~v  185 (394)
                      ...++.++..+|..+.++.+=....|.-   |+.||...+.......+|+.+...+...+.+.. ....+.+.+.++.+.
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~  167 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM  167 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence            4445566777888888877766666554   445778788877788888888877776666543 333444445556655


Q ss_pred             HHhhhhcccc
Q 016123          186 CLGAIFFLRE  195 (394)
Q Consensus       186 ~~~~~~~~~~  195 (394)
                      .+...++.++
T Consensus       168 ~~~~~~~~~e  177 (433)
T PF03092_consen  168 LIVALFLLEE  177 (433)
T ss_pred             HHHHHHhhhh
Confidence            5555555554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.56  E-value=0.0026  Score=63.21  Aligned_cols=125  Identities=8%  Similarity=0.009  Sum_probs=78.7

Q ss_pred             hcHHHHHHHc--CCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHH
Q 016123           35 NYSDALKTLM--NLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM  111 (394)
Q Consensus        35 ~~~~~l~~~~--g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l  111 (394)
                      .+.+.+.++.  +.+....+............ -+++|++.||+++|+++.+..+...+..++....       ++...+
T Consensus       253 s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~-------~~~~~~  325 (410)
T TIGR00885       253 TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA-------GGHVGL  325 (410)
T ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-------CChHHH
Confidence            4445544443  44443333332222333333 6889999999999999888887777776665432       122222


Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          112 CVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                       ...++.|+..+..++.......+.++++...+.+...++. +|++++|++...+.+
T Consensus       326 -~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~-~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       326 -YCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI-IGGGIVPPLQGFIID  380 (410)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH-hccchHHHHHHHHHH
Confidence             2334455666666777777888999887655444444443 999999999988876

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.52  E-value=0.0041  Score=59.55  Aligned_cols=154  Identities=17%  Similarity=0.091  Sum_probs=98.3

Q ss_pred             ccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhc-cCchHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 016123           29 NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQPL  106 (394)
Q Consensus        29 ~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr-~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~  106 (394)
                      ..|+.--+.|++-.|.|+|..+.++..+...+... .++..-.+.+| -..|+.......++.+|+..+.+...     .
T Consensus       223 ~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~-----~  297 (395)
T COG2807         223 LYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPG-----Q  297 (395)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-----h
Confidence            45777778999999999999999986555555554 46666667774 56677777777788888888776521     1


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc--CCCchHHHHHhhhhhhHHHHHHHHHhhcCC--ChhHHHHHHHHHH
Q 016123          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR--NRGPVSGILKGYVGLSTAIFTDLCSALFAD--DPAKFLFMLAIVP  182 (394)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~--~RG~a~gl~~~~~glg~~i~~~i~~~~~~~--~~~~~~~~~~~~~  182 (394)
                      .++.   ..++.|+|.|..+..+...+..-.++  +-+.-.|..+..-.+=++..|.+...+.+.  ++..-...+....
T Consensus       298 ~~~l---w~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~  374 (395)
T COG2807         298 LPIL---WALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALAT  374 (395)
T ss_pred             HHHH---HHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence            2221   24788999988887777777766643  455566666555444455666666666653  3333333333334


Q ss_pred             HHHHHhhh
Q 016123          183 FVVCLGAI  190 (394)
Q Consensus       183 ~~v~~~~~  190 (394)
                      .++.+.+.
T Consensus       375 i~m~i~Gl  382 (395)
T COG2807         375 LLMLIFGL  382 (395)
T ss_pred             HHHHHHHh
Confidence            44444443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.48  E-value=0.0018  Score=59.43  Aligned_cols=121  Identities=21%  Similarity=0.141  Sum_probs=84.2

Q ss_pred             hcHHHHHHHcCCCh--hhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHH
Q 016123           35 NYSDALKTLMNLTQ--LELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQM  111 (394)
Q Consensus        35 ~~~~~l~~~~g~s~--~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l  111 (394)
                      ...+.+.++++.+.  .+.++......++... .++.|++.||+|+|+.+..+......+.....+...     ...+.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~   97 (338)
T COG0477          23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN-----VGLALL   97 (338)
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc-----chHHHH
Confidence            34555666666665  3666665555666654 589999999999998888888765555444333210     136667


Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHHhccc--CCCchHHHHHhh-hhhhHHHHH
Q 016123          112 CVFLCMGGNSTTWMNTAVLVTCIRNFRR--NRGPVSGILKGY-VGLSTAIFT  160 (394)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp~--~RG~a~gl~~~~-~glg~~i~~  160 (394)
                      .+.++..|++.+..+........+++|+  +|+...+..... ..+|..+.+
T Consensus        98 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (338)
T COG0477          98 LILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGP  149 (338)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778888888887777888889999996  789988888874 545555544

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.44  E-value=0.0028  Score=66.57  Aligned_cols=133  Identities=12%  Similarity=-0.029  Sum_probs=90.7

Q ss_pred             hcHHHHHHHcCCChhhhHHH-HHHHHhhhhhhhhhHhhhhc-cCchHHHHHHHHHHHHHHHHHHHHHHhccCC-chHHHH
Q 016123           35 NYSDALKTLMNLTQLELNNL-SVVKDIGKAFGLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQP-LSYWQM  111 (394)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~~-~~~~~~~~~~~~~~G~l~Dr-~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~~~l  111 (394)
                      ++...+.+.+|++.++...+ .....+..+...++|++.|+ +|++++++++.++..+|+.+.+......... ......
T Consensus         9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~   88 (654)
T TIGR00926         9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLD   88 (654)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHH
Confidence            34455677899999888774 44444444568899999998 8999999999999999998876531110000 011223


Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHHhccc----CCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          112 CVFLCMGGNSTTWMNTAVLVTCIRNFRR----NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp~----~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      ++...+..+|.|..-.+..+...+-|++    +|-....+...+..+|+.+.+++...+-
T Consensus        89 l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~  148 (654)
T TIGR00926        89 LLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILR  148 (654)
T ss_pred             HHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566677777666666777788863    2556677777777888888777776654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.31  E-value=2.8e-06  Score=85.08  Aligned_cols=164  Identities=18%  Similarity=0.079  Sum_probs=97.3

Q ss_pred             cchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHH---HHHHhccCCch
Q 016123           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQW---LVVSRKIQPLS  107 (394)
Q Consensus        32 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~---~~~~~~~~~~~  107 (394)
                      ....|.+.+.+..+.+...  .......+... ..+++..+.||+|||++++.+....++....++   ....+.....+
T Consensus       271 ~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (451)
T PF00083_consen  271 FIFYYSPSIFENAGISNSF--LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWS  348 (451)
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445667777777777661  11121222222 356777999999999999999988887776664   11111000001


Q ss_pred             HHHHHH-HHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCCh-hHHHHHHHHHHHH
Q 016123          108 YWQMCV-FLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDP-AKFLFMLAIVPFV  184 (394)
Q Consensus       108 ~~~l~~-~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~  184 (394)
                      ...+.. .....+.+.+.. ........|.||. .|+++.|+......+++++.+.+...+.+... +..+...+++..+
T Consensus       349 ~~~i~~~~l~~~~~~~g~~-~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i  427 (451)
T PF00083_consen  349 ILSIVFLALFFAFFSLGWG-PLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLI  427 (451)
T ss_pred             cccceeeeecccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHH
Confidence            222221 112222232332 3445677999995 69999999999888888888777766665433 4555555555555


Q ss_pred             HHHhhhhcccccCC
Q 016123          185 VCLGAIFFLRETTP  198 (394)
Q Consensus       185 v~~~~~~~~~~~p~  198 (394)
                      ..+...+++||...
T Consensus       428 ~~i~~~~~lpET~g  441 (451)
T PF00083_consen  428 AIIFVYFFLPETKG  441 (451)
T ss_pred             HHhheeEEEeeCCC
Confidence            55566666665443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.30  E-value=0.00049  Score=67.63  Aligned_cols=182  Identities=8%  Similarity=-0.021  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHH-hcccccchhcHHHHHHHcCCChhhhHH-----HHHHHH----hhhhh-hhhhHhhhhccCchHHHHH
Q 016123           15 LGFVTAVWVQAI-SGNNYTFSNYSDALKTLMNLTQLELNN-----LSVVKD----IGKAF-GLLAGLASDRIPAPIILLI   83 (394)
Q Consensus        15 ~~l~~~~~~~~~-~g~~y~~~~~~~~l~~~~g~s~~~~~~-----~~~~~~----~~~~~-~~~~G~l~Dr~G~r~~~~~   83 (394)
                      ..+++.+...+. .-..|..+++...+-+..++.+.+...     ......    ++.+- .++...++|+.|||++.+-
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            445555555443 345789999999999888888765544     111111    12221 3567789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCchHHHHH-HHHHHHhhhhhhhhhhHHHHHHHhcccC-CCchHHHHHhhhhhhHHHHHH
Q 016123           84 GSLEGLVGYGAQWLVVSRKIQPLSYWQMC-VFLCMGGNSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGYVGLSTAIFTD  161 (394)
Q Consensus        84 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~-~~~~l~G~g~g~~~~~~~~~~~~~Fp~~-RG~a~gl~~~~~glg~~i~~~  161 (394)
                      |.+++++-++..+....+.........++ +..++.-+|=+   .......++.||.+ ||+.-|+..+.-=+|+.+...
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~  460 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF  460 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence            99999888777765443211111122223 23344444433   23345668999965 999999999888888888887


Q ss_pred             HHHhhcCC-----ChhHHHHHHHHHHHHHHHhhhhcccccCCC
Q 016123          162 LCSALFAD-----DPAKFLFMLAIVPFVVCLGAIFFLRETTPA  199 (394)
Q Consensus       162 i~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~  199 (394)
                      .+....+.     ..-+..+.+...+.....+..+++|+..+.
T Consensus       461 ~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~  503 (538)
T KOG0252|consen  461 GFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGK  503 (538)
T ss_pred             HhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccccc
Confidence            77776652     222333344444444455555556644443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.29  E-value=0.0039  Score=62.29  Aligned_cols=126  Identities=13%  Similarity=0.029  Sum_probs=82.6

Q ss_pred             HHHHcCCChhhhHHHHH-HHHhhhhhhhhhHhhhhc----cCchHH-HHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Q 016123           40 LKTLMNLTQLELNNLSV-VKDIGKAFGLLAGLASDR----IPAPII-LLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCV  113 (394)
Q Consensus        40 l~~~~g~s~~~~~~~~~-~~~~~~~~~~~~G~l~Dr----~G~r~~-~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~  113 (394)
                      +.+.+|++...++.+.. .-.+-++.-|+.|.+.||    +||||. ++.|.+..++.+.+++.... .....+....++
T Consensus        39 YTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~-~~~~~k~~ya~v  117 (467)
T COG2211          39 YTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPD-FSMTGKLIYALV  117 (467)
T ss_pred             HhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCC-cccCcchHHHHH
Confidence            57889999999988543 333344557999999998    666654 55676778777777654321 000112333344


Q ss_pred             HHHHHhhhhhhhhhhHHHHHHHhc--ccCCCchHHHHHhhhhhhHHHHHHHHHhh
Q 016123          114 FLCMGGNSTTWMNTAVLVTCIRNF--RRNRGPVSGILKGYVGLSTAIFTDLCSAL  166 (394)
Q Consensus       114 ~~~l~G~g~g~~~~~~~~~~~~~F--p~~RG~a~gl~~~~~glg~~i~~~i~~~~  166 (394)
                      -..+.+++......+..+...+.=  |++|-...+.-+.+..+|..+...+...+
T Consensus       118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~pl  172 (467)
T COG2211         118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPL  172 (467)
T ss_pred             HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667777777666666666665  45799999998888888877665544433

>PRK11462 putative transporter; Provisional

Probab=97.27  E-value=0.0098  Score=60.06  Aligned_cols=141  Identities=15%  Similarity=0.029  Sum_probs=68.8

Q ss_pred             HHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHH
Q 016123           52 NNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVL  130 (394)
Q Consensus        52 ~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~  130 (394)
                      +.+.....+..+ ..++++++.||+|.|++...+..+..+......+.  .   ..+.+.+++..++.|++.+.......
T Consensus       266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~l~g~~~~~~~~l~~  340 (460)
T PRK11462        266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV--P---MQASITMFVFIFVIGVLHQLVTPIQW  340 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--c---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334334444444 36889999999999998776655444433333221  1   12232333334455655554433333


Q ss_pred             HHHHHhcc------cCCCchH--HHH----HhhhhhhHHHHHHHHHhh-cCC-----Ch---hHHHHHHHHHHHHHHHhh
Q 016123          131 VTCIRNFR------RNRGPVS--GIL----KGYVGLSTAIFTDLCSAL-FAD-----DP---AKFLFMLAIVPFVVCLGA  189 (394)
Q Consensus       131 ~~~~~~Fp------~~RG~a~--gl~----~~~~glg~~i~~~i~~~~-~~~-----~~---~~~~~~~~~~~~~v~~~~  189 (394)
                      .+.++.-+      .+|..++  +..    +.+.++|+.+...+.... ++.     +.   ...-.+...+|++..+++
T Consensus       341 ~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~~~~~~q~~~~~~~i~~~~~~~P~~~~~~~  420 (460)
T PRK11462        341 VMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDAAEKAQNSATISIIIALFTIVPAICYLLS  420 (460)
T ss_pred             HHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333222      2344333  332    334455555555444321 111     11   223445566777777777


Q ss_pred             hhcc-cccC
Q 016123          190 IFFL-RETT  197 (394)
Q Consensus       190 ~~~~-~~~p  197 (394)
                      .+++ +..|
T Consensus       421 ~~~~~~~y~  429 (460)
T PRK11462        421 AIIAKRYYS  429 (460)
T ss_pred             HHHHHHhcc
Confidence            6655 3444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.16  E-value=0.0059  Score=61.61  Aligned_cols=153  Identities=18%  Similarity=0.101  Sum_probs=90.8

Q ss_pred             cccchhcHHHH-HHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCch---------HHHHHHHHHHHHHHHHHHHH
Q 016123           30 NYTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAP---------IILLIGSLEGLVGYGAQWLV   98 (394)
Q Consensus        30 ~y~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r---------~~~~~g~~~~~~g~~~~~~~   98 (394)
                      .+.+-.|.|.+ ++.+|++..+.+++++.-.+.+. ..+++|.+.||.-.|         ..-.++....++.++.+.+.
T Consensus       274 ~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~  353 (466)
T KOG2532|consen  274 FYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT  353 (466)
T ss_pred             HHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec
Confidence            34555677765 77899999999998877777765 589999999998652         22223333333344333322


Q ss_pred             HHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHH-HhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCC---hhHH
Q 016123           99 VSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCI-RNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADD---PAKF  174 (394)
Q Consensus        99 ~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~-~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~---~~~~  174 (394)
                        +.  .+....+.+..  .+.+............. ..-|++-+..+|+.+....+.+.+.|.+...+..++   .|+.
T Consensus       354 --~~--~~~~~a~~~l~--~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~  427 (466)
T KOG2532|consen  354 --SD--EHRLLAVILLT--IAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRI  427 (466)
T ss_pred             --CC--CcchHHHHHHH--HHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHH
Confidence              11  01211111111  11122111222333333 337889999999999999999999999988888532   4655


Q ss_pred             HHHHHHHHHHHHHh
Q 016123          175 LFMLAIVPFVVCLG  188 (394)
Q Consensus       175 ~~~~~~~~~~v~~~  188 (394)
                      .+++..+..++..+
T Consensus       428 VF~i~a~i~~~~~i  441 (466)
T KOG2532|consen  428 VFLIAAGILIVGNI  441 (466)
T ss_pred             HHHHHHHHHHHhch
Confidence            55555444444433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.15  E-value=0.002  Score=64.59  Aligned_cols=152  Identities=11%  Similarity=0.053  Sum_probs=100.2

Q ss_pred             HHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHh
Q 016123           41 KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGG  119 (394)
Q Consensus        41 ~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G  119 (394)
                      .|+++-...-.+..+.....+-+. -++.+++++|+|.-+++.+|.....+=++..+..       .+.|+..-.-++.|
T Consensus       398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-------~n~W~vLPieilqg  470 (618)
T KOG3762|consen  398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-------QNPWMVLPIEILQG  470 (618)
T ss_pred             HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-------cCchheeeHHHHHH
Confidence            455664444444333333334343 5788999999999999999999888877776654       46777776889999


Q ss_pred             hhhhhhhhhHHHHHHHhcccC-CCchHHHHHhh-hhhhHHHHHHHHHhhcCCCh-hHHHHHHHHHHHHHHHhhhhccccc
Q 016123          120 NSTTWMNTAVLVTCIRNFRRN-RGPVSGILKGY-VGLSTAIFTDLCSALFADDP-AKFLFMLAIVPFVVCLGAIFFLRET  196 (394)
Q Consensus       120 ~g~g~~~~~~~~~~~~~Fp~~-RG~a~gl~~~~-~glg~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~  196 (394)
                      +..+..+.+...+++..-|++ |..+-|+.... .|+|-.+.+.+...+++.-+ ...+...++.+.++++.-...-+..
T Consensus       471 it~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l  550 (618)
T KOG3762|consen  471 ITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLL  550 (618)
T ss_pred             HHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999864 99999998763 35555555555555554433 3444444444444333333333444


Q ss_pred             CCC
Q 016123          197 TPA  199 (394)
Q Consensus       197 p~~  199 (394)
                      +++
T Consensus       551 ~~~  553 (618)
T KOG3762|consen  551 KRR  553 (618)
T ss_pred             ccc
Confidence            443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.14  E-value=0.015  Score=56.53  Aligned_cols=139  Identities=14%  Similarity=0.095  Sum_probs=95.3

Q ss_pred             hcccccchhcHHHHHHH-cCCChhhhHHHHHHHHhhhhhh-hhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccC
Q 016123           27 SGNNYTFSNYSDALKTL-MNLTQLELNNLSVVKDIGKAFG-LLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ  104 (394)
Q Consensus        27 ~g~~y~~~~~~~~l~~~-~g~s~~~~~~~~~~~~~~~~~~-~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~  104 (394)
                      .|.--+.+.+.+.+.++ .|.+..|.+.+.+....+...+ +++-++..|+-+.|.+.+.++...+-.+...++      
T Consensus       249 VG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~------  322 (422)
T COG0738         249 VGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI------  322 (422)
T ss_pred             HhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh------
Confidence            45544455566665544 7888888888777777776665 688889999999999888776555444444433      


Q ss_pred             CchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHH
Q 016123          105 PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKF  174 (394)
Q Consensus       105 ~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~  174 (394)
                       ++.+.++ ..++.|+-.+..++.......+..|++-..+.++..+ ..+|+++.|++...+.+......
T Consensus       323 -~g~v~~~-~l~~ig~F~simfPTIfslal~~l~~~ts~~s~~l~m-aivGGAiiP~l~G~i~d~~g~~~  389 (422)
T COG0738         323 -GGVVALY-ALFLIGLFNSIMFPTIFSLALKNLGEHTSVGSGLLVM-AIVGGAIIPPLQGVIADMFGIQL  389 (422)
T ss_pred             -cChHHHH-HHHHHHHHhHHHHHHHHHHHHhccCccccccceeeee-heecchHHHHHHHHHHHhhhhHH
Confidence             2444433 2355667777788888888889999665555555443 46899999999988877644333

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.13  E-value=0.0062  Score=51.87  Aligned_cols=97  Identities=13%  Similarity=0.045  Sum_probs=72.8

Q ss_pred             hhhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CC
Q 016123           63 AFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NR  141 (394)
Q Consensus        63 ~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~R  141 (394)
                      +..+++..+.+++|+|+.+++|.+.+.+-......        ++.+.++....+.|+|.+...++.-..+.+.-++ +|
T Consensus        52 ~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~--------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~  123 (156)
T PF05978_consen   52 ISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY--------PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETI  123 (156)
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHH
Confidence            34677888999999999999999888754433221        3566777788999999999888877888888764 69


Q ss_pred             CchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          142 GPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       142 G~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      ++-.|+..+....+..+...+.....
T Consensus       124 ~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  124 GRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888877776666655544433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.12  E-value=0.0024  Score=48.22  Aligned_cols=69  Identities=16%  Similarity=0.141  Sum_probs=61.5

Q ss_pred             cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHH
Q 016123           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLV   98 (394)
Q Consensus        30 ~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~   98 (394)
                      .+.|+...|.++++.++|.++.+++.+...+|... .+...++.+|..+|+.+..+.+...+..+.+++.
T Consensus         8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen    8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            57888899999999999999999999999999976 6788999999899999999999988888887764

Note that many members are hypothetical proteins.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.03  E-value=0.0044  Score=62.86  Aligned_cols=135  Identities=19%  Similarity=0.095  Sum_probs=85.1

Q ss_pred             cccccchhcHHHHHHH-cCCChhhhHHHHHHHHhhhhh-hhhhHhhhhc----cCchHHHHHHHHHHH-HHHHHHHHHHH
Q 016123           28 GNNYTFSNYSDALKTL-MNLTQLELNNLSVVKDIGKAF-GLLAGLASDR----IPAPIILLIGSLEGL-VGYGAQWLVVS  100 (394)
Q Consensus        28 g~~y~~~~~~~~l~~~-~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr----~G~r~~~~~g~~~~~-~g~~~~~~~~~  100 (394)
                      ...|+++.+.|.+.++ .|+|..+.+.+++...++.+. .+++|.+.||    ..+|........++. +|+..+...  
T Consensus       287 lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~--  364 (495)
T KOG2533|consen  287 LVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA--  364 (495)
T ss_pred             hccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence            4568889999987666 679999999988888888765 7899999999    666666666555554 343433221  


Q ss_pred             hccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc--cCCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123          101 RKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR--RNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (394)
Q Consensus       101 ~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp--~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~  169 (394)
                           ......+.+.+....+.....+....-.+....  .+|-...+....+.+.++.+.+++......+
T Consensus       365 -----~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap  430 (495)
T KOG2533|consen  365 -----AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAP  430 (495)
T ss_pred             -----ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCc
Confidence                 111222222222222222222333334444444  2566677777788888889888888776655

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.01  Score=59.31  Aligned_cols=119  Identities=18%  Similarity=0.069  Sum_probs=81.1

Q ss_pred             cCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhh
Q 016123           44 MNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNST  122 (394)
Q Consensus        44 ~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~  122 (394)
                      +|.+..+..........+.+. .++..++.+|+|+|++..++.++..+++.+..+..     .++.+.+++..++.++|.
T Consensus       267 lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~-----~~~~~l~~~~~~i~~~g~  341 (467)
T COG2211         267 LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP-----AGSVVLIVVALIIAGVGT  341 (467)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc-----CcchHHHHHHHHHHHHHh
Confidence            455555554444444455555 68899999999999999999999999999988763     135777777888888999


Q ss_pred             hhhhhhHHHHHH------Hhccc--CCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          123 TWMNTAVLVTCI------RNFRR--NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       123 g~~~~~~~~~~~------~~Fp~--~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      +..+...+.+++      ||-..  +-|..-|......=+|.++...+....+
T Consensus       342 ~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L  394 (467)
T COG2211         342 GIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL  394 (467)
T ss_pred             hccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888777776665      44442  2466666655444455555554444443

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.89  E-value=0.004  Score=46.36  Aligned_cols=54  Identities=19%  Similarity=0.245  Sum_probs=43.6

Q ss_pred             hcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHH
Q 016123           35 NYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEG   88 (394)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~   88 (394)
                      .|.+...++.|+|..|++.+.....+... ..|+.|.++||+++++.++.+...+
T Consensus        21 Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   21 PFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             hhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            45555666799999999998777766665 4899999999999999998876654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.88  E-value=0.039  Score=55.80  Aligned_cols=134  Identities=13%  Similarity=0.050  Sum_probs=86.2

Q ss_pred             hhhhHhhhhccCc-hHHHHHHHHHHHHHHHHHHHHHH--h---c--------cCCch-HHHHHHHHHHHhhhhhhhhhhH
Q 016123           65 GLLAGLASDRIPA-PIILLIGSLEGLVGYGAQWLVVS--R---K--------IQPLS-YWQMCVFLCMGGNSTTWMNTAV  129 (394)
Q Consensus        65 ~~~~G~l~Dr~G~-r~~~~~g~~~~~~g~~~~~~~~~--~---~--------~~~~~-~~~l~~~~~l~G~g~g~~~~~~  129 (394)
                      +++--++.+|+|+ |++..++.++.+++.....+...  +   .        .++.. .+...+...+.|+..+..+..+
T Consensus       322 s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siP  401 (477)
T TIGR01301       322 SIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIP  401 (477)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHh
Confidence            5566778999996 56668888888888777654321  0   0        00001 2344445567788888888899


Q ss_pred             HHHHHHhccc---CCCchHHHHHhhhhhhHHHHHHHHHhh---cCCChhHHHHHHHHHHHHHHHhhhhcccccCC
Q 016123          130 LVTCIRNFRR---NRGPVSGILKGYVGLSTAIFTDLCSAL---FADDPAKFLFMLAIVPFVVCLGAIFFLRETTP  198 (394)
Q Consensus       130 ~~~~~~~Fp~---~RG~a~gl~~~~~glg~~i~~~i~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~  198 (394)
                      +.++++.-|+   +.|.-+|+.+...-+...+.+.....+   ++++....+.+-++...+.++.+.+.+|.++.
T Consensus       402 fal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       402 FALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999998883   469999999999888888777655443   33333334444444444455555666666553

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.58  E-value=0.0078  Score=62.19  Aligned_cols=148  Identities=17%  Similarity=0.164  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHhcc-cccchhcHHHH-HHHcCCCh---hhhHHHHHHHHhhhhh-hhhhHhhhhccCchH-HHHHHHHHHH
Q 016123           17 FVTAVWVQAISGN-NYTFSNYSDAL-KTLMNLTQ---LELNNLSVVKDIGKAF-GLLAGLASDRIPAPI-ILLIGSLEGL   89 (394)
Q Consensus        17 l~~~~~~~~~~g~-~y~~~~~~~~l-~~~~g~s~---~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~-~~~~g~~~~~   89 (394)
                      +.+.+++.+..|. .|+...+-|+. ..-|+-+.   .+.++.+....++... +.+.|.+..++++-| .++++.+++.
T Consensus       312 ~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~t  391 (599)
T PF06609_consen  312 FAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMT  391 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence            3333344444454 35555555654 44555443   2455665555566554 677888887766544 4557777776


Q ss_pred             HHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123           90 VGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus        90 ~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      ++..+++.. .  .  .+....+.+.++.|+|.|..........+-.-| ++-|+++|+..+...+|+.++..++...+.
T Consensus       392 a~~Gama~~-~--~--~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~  466 (599)
T PF06609_consen  392 AFCGAMAAV-R--P--DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT  466 (599)
T ss_pred             HHHHHHHHc-c--C--CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            655555433 1  1  122333456778888888776555555555557 469999999999999999999998888775


Q ss_pred             C
Q 016123          169 D  169 (394)
Q Consensus       169 ~  169 (394)
                      +
T Consensus       467 n  467 (599)
T PF06609_consen  467 N  467 (599)
T ss_pred             h
Confidence            3

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.57  E-value=0.014  Score=61.20  Aligned_cols=62  Identities=15%  Similarity=0.087  Sum_probs=54.1

Q ss_pred             cHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHH
Q 016123           36 YSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWL   97 (394)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~   97 (394)
                      ....++++|+++.++.+++.....++..+ ..+..+..-|.-|-+.+-+|.+++++|.++.++
T Consensus       119 ~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~al  181 (735)
T KOG3626|consen  119 VITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFAL  181 (735)
T ss_pred             hhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhC
Confidence            34668999999999999988888888865 678899999999999999999999999988765

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.56  E-value=0.083  Score=54.04  Aligned_cols=130  Identities=12%  Similarity=0.061  Sum_probs=87.3

Q ss_pred             hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCc
Q 016123           65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGP  143 (394)
Q Consensus        65 ~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~  143 (394)
                      ....+.+.||+|||.....+..+..++++...+....    ...+...+...+...+.+..+.......++.+|+ .|..
T Consensus       367 ~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~  442 (521)
T KOG0255|consen  367 YFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD----LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNT  442 (521)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            4466899999999999999999999999988775321    1111222333444445555555667888999996 5999


Q ss_pred             hHHHHHhhhhhhHHHHHHHHHhhcCCC-hhHHHHHHHHHHHHHHHhhhhcccccCCC
Q 016123          144 VSGILKGYVGLSTAIFTDLCSALFADD-PAKFLFMLAIVPFVVCLGAIFFLRETTPA  199 (394)
Q Consensus       144 a~gl~~~~~glg~~i~~~i~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~p~~  199 (394)
                      +.+...+...+|+.+.+.+........ ...... .+....+..+++.+++|++...
T Consensus       443 ~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~lpet~~~  498 (521)
T KOG0255|consen  443 AVGAISAAARLGSILAPLFPLLLRQMFPLLGLIL-FGWLALLLGLLSLLLLPETKGK  498 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH-HHHHHHHHHHHHHhcCcccCCC
Confidence            999999988888888777664433211 112222 4556666666666777766544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.51  E-value=0.05  Score=53.22  Aligned_cols=120  Identities=18%  Similarity=0.178  Sum_probs=89.6

Q ss_pred             HHHcCCChhhhHHHHHHHHhhhhhh-hhhHhhhh-ccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 016123           41 KTLMNLTQLELNNLSVVKDIGKAFG-LLAGLASD-RIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMG  118 (394)
Q Consensus        41 ~~~~g~s~~~~~~~~~~~~~~~~~~-~~~G~l~D-r~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~  118 (394)
                      -+.||+|.+|...++.....|...+ ...|++.. |.+++++..+|+....+++.+...+  +..  .+.+.+...-++.
T Consensus       236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a--~~~--~~~~~~~~~~~l~  311 (403)
T PF03209_consen  236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA--GPL--GSPWLFRPGVFLL  311 (403)
T ss_pred             hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH--Hhc--ccchHHHHHHHHH
Confidence            5779999999988888777777664 47777666 7999999999999888888776554  221  3567777778899


Q ss_pred             hhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHH
Q 016123          119 GNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCS  164 (394)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~  164 (394)
                      |+|.|...+.....+.+.-+ ++.|+.+|..-+...++..+...+..
T Consensus       312 G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG  358 (403)
T PF03209_consen  312 GLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGG  358 (403)
T ss_pred             HHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888888888875 57898888876655554444444333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.46  E-value=0.033  Score=56.09  Aligned_cols=121  Identities=22%  Similarity=0.245  Sum_probs=93.4

Q ss_pred             HHHHcCCChhhhHHH-HHHHHhhhhhhh-hhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 016123           40 LKTLMNLTQLELNNL-SVVKDIGKAFGL-LAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCM  117 (394)
Q Consensus        40 l~~~~g~s~~~~~~~-~~~~~~~~~~~~-~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l  117 (394)
                      ++..++|+..+.+.+ +....++...+. ....+...+|-|+++.+|.+...++....+++       +..|+.+....+
T Consensus       268 l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-------~~~w~~~~~~v~  340 (463)
T KOG2816|consen  268 LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-------TETWMMFAAGVV  340 (463)
T ss_pred             EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh-------ccchhhhHHHHH
Confidence            567899999999975 444444445554 55588888999999999999999999988875       467888877666


Q ss_pred             HhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          118 GGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       118 ~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      .++. +...++.-+..+++-+ +++|++.++.....++++.+.+.++..++.
T Consensus       341 ~~~~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  341 VALA-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             HHhh-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            6543 4445666677777775 689999999999999999999888877653

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.17  E-value=0.033  Score=54.14  Aligned_cols=125  Identities=19%  Similarity=0.051  Sum_probs=84.0

Q ss_pred             HHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccC--chHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Q 016123           40 LKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIP--APIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLC  116 (394)
Q Consensus        40 l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G--~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~  116 (394)
                      ..|.+..+.-++++......+...+ ..+.|.+.||++  ++.....|.++.+......-++       +++.++.+-++
T Consensus       297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~-------~~~~~L~vp~~  369 (464)
T KOG3764|consen  297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA-------TSIAQLWVPNF  369 (464)
T ss_pred             HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh-------hhHHHHhhhhH
Confidence            4667775555777754444555554 789999999999  7666666666665443333222       35666766566


Q ss_pred             HHhhhhhhhhhhHHHHHHHhcc-c------CCCchHHHHHhhhhhhHHHHHHHHHhhcCCCh
Q 016123          117 MGGNSTTWMNTAVLVTCIRNFR-R------NRGPVSGILKGYVGLSTAIFTDLCSALFADDP  171 (394)
Q Consensus       117 l~G~g~g~~~~~~~~~~~~~Fp-~------~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~  171 (394)
                      ..|++.+..+.....+....-. +      --|...++...++++|.++.|.+...+.+...
T Consensus       370 ~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iG  431 (464)
T KOG3764|consen  370 GLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIG  431 (464)
T ss_pred             HHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehh
Confidence            6666666666555555544443 2      25899999999999999999988888877543

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=96.03  E-value=0.2  Score=50.90  Aligned_cols=115  Identities=11%  Similarity=0.049  Sum_probs=75.2

Q ss_pred             HHHHHHHHhhhh-hhhhhHhhhhccCc--h----H-HHHHHHHHHHHHHHHHHHHHHhccC--CchHHHHHHHHHHHhhh
Q 016123           52 NNLSVVKDIGKA-FGLLAGLASDRIPA--P----I-ILLIGSLEGLVGYGAQWLVVSRKIQ--PLSYWQMCVFLCMGGNS  121 (394)
Q Consensus        52 ~~~~~~~~~~~~-~~~~~G~l~Dr~G~--r----~-~~~~g~~~~~~g~~~~~~~~~~~~~--~~~~~~l~~~~~l~G~g  121 (394)
                      +++.+...+..+ ++|+.+++-.|..+  |    + =+.+|.++.+++++.+.+......+  ..+.+++.+..++..+|
T Consensus       311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g  390 (493)
T PRK15462        311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA  390 (493)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence            344444444443 47777777555522  1    1 1668888999998887654322111  12455566667778888


Q ss_pred             hhhhhhhHHHHHHHhcccC-CCchHHHHHhh-hhhhHHHHHHHHHhh
Q 016123          122 TTWMNTAVLVTCIRNFRRN-RGPVSGILKGY-VGLSTAIFTDLCSAL  166 (394)
Q Consensus       122 ~g~~~~~~~~~~~~~Fp~~-RG~a~gl~~~~-~glg~~i~~~i~~~~  166 (394)
                      .-+..+.....+++..|+| ||..+|+.... ..+|..+.+.+....
T Consensus       391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8777788889999999975 99999998663 356666666655543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=95.83  E-value=0.044  Score=55.25  Aligned_cols=125  Identities=20%  Similarity=0.237  Sum_probs=80.6

Q ss_pred             hhhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCC
Q 016123           63 AFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNR  141 (394)
Q Consensus        63 ~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~R  141 (394)
                      +.++..|.+.||+|||..+.+..+...+.-....+.        .+|.+....+..|.  +.........++..-. ++|
T Consensus        77 i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~--------~~~~~~~~~l~g~~--~~~~s~~~a~vadis~~~~R  146 (463)
T KOG2816|consen   77 ISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ--------GYWFFLLLGLSGGF--SAIFSVGFAYVADISSEEER  146 (463)
T ss_pred             HHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH--------HHHHhhhcccccch--hhhhhhhhhheeeccchhHH
Confidence            448999999999999999999888887776665442        23332222222222  2223344555666665 469


Q ss_pred             CchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH-hhhhcccccC
Q 016123          142 GPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL-GAIFFLRETT  197 (394)
Q Consensus       142 G~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~p  197 (394)
                      -...|+..+.++.+..+.+.+.....+...-.....++....+..+ -..+++||+-
T Consensus       147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl  203 (463)
T KOG2816|consen  147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL  203 (463)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence            9999999999999999988888777665333344444444444444 3445555543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.83  E-value=1.4  Score=44.63  Aligned_cols=151  Identities=10%  Similarity=-0.047  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHhcccccchhcHHHHHHHcCCCh-----hhhHHHHHHHHhhh-h-hhhhhHhhhhccCchHHHHHHHH
Q 016123           14 WLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQ-----LELNNLSVVKDIGK-A-FGLLAGLASDRIPAPIILLIGSL   86 (394)
Q Consensus        14 w~~l~~~~~~~~~~g~~y~~~~~~~~l~~~~g~s~-----~~~~~~~~~~~~~~-~-~~~~~G~l~Dr~G~r~~~~~g~~   86 (394)
                      +..++...+..++....|.   ..-++++.+..+.     ..+.++-+...+.+ + +.++.+++.+|++++++.-+-..
T Consensus         6 ~~k~~~~~l~fF~il~~Y~---iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYT---ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            3334444444444433332   3567888887743     45666555554444 3 37899999999999998887777


Q ss_pred             HHHHHHHHHHHHHHhccCC--c----------------------hHHHHHHHHHHHhhhhhhhhh-hHHHHHHHhcc-cC
Q 016123           87 EGLVGYGAQWLVVSRKIQP--L----------------------SYWQMCVFLCMGGNSTTWMNT-AVLVTCIRNFR-RN  140 (394)
Q Consensus        87 ~~~~g~~~~~~~~~~~~~~--~----------------------~~~~l~~~~~l~G~g~g~~~~-~~~~~~~~~Fp-~~  140 (394)
                      .+..-+.++++........  +                      +.|...++.+..-+=...... .-+..+++.+. ++
T Consensus        83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~q  162 (472)
T TIGR00769        83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDE  162 (472)
T ss_pred             HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence            7766666665542210000  0                      022222222222222222221 44566777775 45


Q ss_pred             CCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          141 RGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       141 RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      -.+--++...+..+|..+.+.+...+.
T Consensus       163 akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       163 AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677777777777776666655543

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.56  E-value=0.47  Score=46.75  Aligned_cols=123  Identities=16%  Similarity=0.152  Sum_probs=81.6

Q ss_pred             hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCch
Q 016123           65 GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPV  144 (394)
Q Consensus        65 ~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a  144 (394)
                      -+.+-+..+|+..+.=+.+..++..+|.++.+++       ++.+.-.++-++.+++.|+.-..... .+..|++.   +
T Consensus        76 Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~-------~~v~~~l~Gv~las~ssg~GE~tfL~-lt~~y~~~---~  144 (402)
T PF02487_consen   76 KLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS-------PSVWVRLLGVVLASLSSGLGEVTFLS-LTHFYGKS---S  144 (402)
T ss_pred             HHHhHhhhhhccchHHHHHHHHHHHHHHhheeec-------cchhHHHHHHHHHhhhhhhhHHHHHH-HHHhcCcc---c
Confidence            4567778899887776777777888888877653       35554445667788888876544444 45667752   4


Q ss_pred             HHHHHhhhhhhHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHhhhhcccccCC
Q 016123          145 SGILKGYVGLSTAIFTDLCSALFA--DDPAKFLFMLAIVPFVVCLGAIFFLRETTP  198 (394)
Q Consensus       145 ~gl~~~~~glg~~i~~~i~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~  198 (394)
                      ++-..+|.|.++.+.+..+..+-.  -..+..++....+|.+..+...+.++.+++
T Consensus       145 l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~  200 (402)
T PF02487_consen  145 LSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPT  200 (402)
T ss_pred             cccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            555667788887777766655443  234566777777777777766767765543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK03612 spermidine synthase; Provisional

Probab=94.41  E-value=1.9  Score=44.38  Aligned_cols=54  Identities=7%  Similarity=-0.014  Sum_probs=31.5

Q ss_pred             CCCchHHHHHhhhhhhHHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHhhhhcc
Q 016123          140 NRGPVSGILKGYVGLSTAIFTDLCSALFAD--DPAKFLFMLAIVPFVVCLGAIFFL  193 (394)
Q Consensus       140 ~RG~a~gl~~~~~glg~~i~~~i~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~  193 (394)
                      +-|...|-+.+...+|+.+.+.+...++-.  ...+..+.++.+..+++++..+..
T Consensus       142 ~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~~  197 (521)
T PRK03612        142 HLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWLF  197 (521)
T ss_pred             chhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            346677777777788887777776665432  333444555555555554444333

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=93.91  E-value=1.9  Score=43.12  Aligned_cols=126  Identities=13%  Similarity=-0.025  Sum_probs=77.3

Q ss_pred             cchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccC---Cch
Q 016123           32 TFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ---PLS  107 (394)
Q Consensus        32 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~---~~~  107 (394)
                      +|+-....+...-|+|...++.+-..+.+..+ ..+...++.+|+|..+.-+++...-.....+....+.....   ..+
T Consensus       276 sf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s  355 (432)
T PF06963_consen  276 SFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSIS  355 (432)
T ss_pred             cCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhH
Confidence            44444444544559999999987555555444 47899999999999999999988665444333222211110   011


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHH
Q 016123          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTA  157 (394)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~  157 (394)
                      ...+..+..+.=+|.=....+....++++-|+ +||...|.-.+...+-..
T Consensus       356 ~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~l  406 (432)
T PF06963_consen  356 AYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFEL  406 (432)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHH
Confidence            22222222222233323456777888899985 799999998887655433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=93.58  E-value=5  Score=40.13  Aligned_cols=69  Identities=16%  Similarity=0.088  Sum_probs=49.6

Q ss_pred             hHHHHhhchhHHHHHHHHHhcccceeeeeeChHHHHHHhCCCc--chhhHHHHHHHHHHhhhhhccccchhc
Q 016123          324 TIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYVD--VSIFVSLTSIWGFFGRIISGSVSEYFI  393 (394)
Q Consensus       324 t~~~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~~G~~~--~a~~vsl~si~~~~GRl~~G~lsD~~~  393 (394)
                      .+++.+|++.|.-- +++.+.-...+.+-+.+..++.+.|+++  .+..=++-+++...|-++..++.+|+|
T Consensus       251 ~w~~Y~~q~vflas-~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riG  321 (432)
T PF06963_consen  251 GWRTYFRQPVFLAS-FALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIG  321 (432)
T ss_pred             cHHHHHhCHHHHHH-HHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46677777766543 3333333445667788888999999985  456777778888888899998888876

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.39  E-value=1.6  Score=43.82  Aligned_cols=105  Identities=17%  Similarity=0.201  Sum_probs=74.3

Q ss_pred             HHHHhhhhh-hhhhH---hhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccC-----------CchHHHHHHHHHHHhh
Q 016123           56 VVKDIGKAF-GLLAG---LASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQ-----------PLSYWQMCVFLCMGGN  120 (394)
Q Consensus        56 ~~~~~~~~~-~~~~G---~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~-----------~~~~~~l~~~~~l~G~  120 (394)
                      ....++.+. +.+.+   +=.+|+|+++++.++..+..++.++.........+           .++.....+..++.|+
T Consensus       286 ~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~  365 (461)
T KOG3098|consen  286 IGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF  365 (461)
T ss_pred             HHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh
Confidence            333444443 44444   44566999999999999999888876654322111           0123334456788899


Q ss_pred             hhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHH
Q 016123          121 STTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFT  160 (394)
Q Consensus       121 g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~  160 (394)
                      +-+...+.-...+...+|++|..+..+.....++++.+..
T Consensus       366 ~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~  405 (461)
T KOG3098|consen  366 GDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAF  405 (461)
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh
Confidence            9988888888889999999999999999988888876643

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=92.52  E-value=0.45  Score=46.31  Aligned_cols=120  Identities=15%  Similarity=0.079  Sum_probs=78.4

Q ss_pred             HHHcCCChhhhHHH-HHHHHhhhhhhhhhHhhhhccC--chHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Q 016123           41 KTLMNLTQLELNNL-SVVKDIGKAFGLLAGLASDRIP--APIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCM  117 (394)
Q Consensus        41 ~~~~g~s~~~~~~~-~~~~~~~~~~~~~~G~l~Dr~G--~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l  117 (394)
                      .+.+|+++.|.+-+ ...+..+..++....+..||..  .+..+..+..++.=.+++.+.+       .....+++...+
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~-------~~~~~l~~~s~l  361 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA-------RTPVVLYLGSTL  361 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc-------ccchhhhHHHHH
Confidence            46799999999984 4444444456788888888877  6767777666665555554432       122344544455


Q ss_pred             HhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          118 GGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       118 ~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      -.+..+..-+.-..++.+.-|+ +||.++|+......++=++.|.+....+
T Consensus       362 ~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~  412 (451)
T KOG2615|consen  362 KSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF  412 (451)
T ss_pred             HHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence            5555454444455566677784 7999999998887777777776654443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=92.48  E-value=0.63  Score=45.42  Aligned_cols=116  Identities=11%  Similarity=0.033  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccC--CchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccC----CCchHHHHHhhh
Q 016123           79 IILLIGSLEGLVGYGAQWLVVSRKIQ--PLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRN----RGPVSGILKGYV  152 (394)
Q Consensus        79 ~~~~~g~~~~~~g~~~~~~~~~~~~~--~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~----RG~a~gl~~~~~  152 (394)
                      +++++|.+++.+|++++.++......  +.+.+.+++...+.++|.|..-+.......+.|+++    |-....+...+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            67889999999999996655322110  112356677777889999988777778899999753    444555667777


Q ss_pred             hhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhhhccc
Q 016123          153 GLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLGAIFFLR  194 (394)
Q Consensus       153 glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  194 (394)
                      .+|+.+...+...+-+...|...+.++.+..+++++..+.-+
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~  123 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR  123 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence            888777766665555556677777777666666666555544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PTZ00207 hypothetical protein; Provisional

Probab=92.04  E-value=3  Score=43.46  Aligned_cols=119  Identities=10%  Similarity=0.023  Sum_probs=76.3

Q ss_pred             HHHHHHHc-CC-Chhh-----hHHHHHHHHhhhhh-hhhhHhhhhccC-----chHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016123           37 SDALKTLM-NL-TQLE-----LNNLSVVKDIGKAF-GLLAGLASDRIP-----APIILLIGSLEGLVGYGAQWLVVSRKI  103 (394)
Q Consensus        37 ~~~l~~~~-g~-s~~~-----~~~~~~~~~~~~~~-~~~~G~l~Dr~G-----~r~~~~~g~~~~~~g~~~~~~~~~~~~  103 (394)
                      ..++-+.+ |. +..+     +++++....+|-+. +.+. .+..|..     ||.+.+....++.++.+++++..    
T Consensus       376 ~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~----  450 (591)
T PTZ00207        376 ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTL----  450 (591)
T ss_pred             HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHHHHHHHHHHHHHC----
Confidence            35676667 66 2232     23334444444433 3444 2222322     45555544445777777776642    


Q ss_pred             CCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHH
Q 016123          104 QPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC  163 (394)
Q Consensus       104 ~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~  163 (394)
                         +-..+++..++.|++.|........+..+.|-|+-|+---+......+|+.+++-..
T Consensus       451 ---p~~~L~~~~~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l  507 (591)
T PTZ00207        451 ---PKAALPLPYFIAAFANGFMAATIALVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLL  507 (591)
T ss_pred             ---CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhccchHHHhhHHhHHHHHHHHHHHHHH
Confidence               113577888899999999888888889999998899888888888888888885433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.65  E-value=0.53  Score=47.26  Aligned_cols=95  Identities=13%  Similarity=-0.121  Sum_probs=72.2

Q ss_pred             hhhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CC
Q 016123           63 AFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NR  141 (394)
Q Consensus        63 ~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~R  141 (394)
                      +..++++.+.|+.|+|..+.+|+..+..-.+.+..        .|-+.++....+.|+|.++.+...-..++++.++ ++
T Consensus        65 v~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~--------~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ti  136 (461)
T KOG3098|consen   65 VSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF--------PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETI  136 (461)
T ss_pred             HHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh--------cchHHHHHHHHHhhhhHHheecccceehhhcCChhhH
Confidence            45789999999999999999999888766555433        3556677788999999998887777889999874 58


Q ss_pred             CchHHHHHhhhhhhHHHHHHHHHh
Q 016123          142 GPVSGILKGYVGLSTAIFTDLCSA  165 (394)
Q Consensus       142 G~a~gl~~~~~glg~~i~~~i~~~  165 (394)
                      .+-.++.-+..-.+..+++.+...
T Consensus       137 e~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  137 ERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             HHHHHHHHHHHHHHHHhhhHhhee
Confidence            888888776665555555444433

>PF12832 MFS_1_like: MFS_1 like family

Probab=91.61  E-value=0.11  Score=38.49  Aligned_cols=45  Identities=16%  Similarity=0.238  Sum_probs=38.6

Q ss_pred             eeeeChHHHHHHhCCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          350 AVMNNMGQIGLALGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       350 ~~~~n~~~i~~~~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      .+...++-+.++.|++  +...+.++.-+...++..++|+++||.+|
T Consensus        18 ~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~   64 (77)
T PF12832_consen   18 CLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGK   64 (77)
T ss_pred             HHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            3556777888999997  46788888999999999999999999986

>TIGR00805 oat sodium-independent organic anion transporter

Probab=91.51  E-value=0.62  Score=49.12  Aligned_cols=66  Identities=11%  Similarity=0.079  Sum_probs=46.6

Q ss_pred             ccccchhcHHHH-HHHcCCChhhhHHHHHHHHh-hhh-hhhhhHhhhhccC--chHHHHHHHHHHHHHHHH
Q 016123           29 NNYTFSNYSDAL-KTLMNLTQLELNNLSVVKDI-GKA-FGLLAGLASDRIP--APIILLIGSLEGLVGYGA   94 (394)
Q Consensus        29 ~~y~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~-~~~-~~~~~G~l~Dr~G--~r~~~~~g~~~~~~g~~~   94 (394)
                      ..+.+..+.|.+ ++++|++..+.+++.....+ +.. ..+++|++.||++  .|+.+..+.++..++.+.
T Consensus       345 ~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       345 AFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            345566677765 67899999999986554444 344 4789999999998  556777776666665544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=90.43  E-value=0.095  Score=48.45  Aligned_cols=79  Identities=15%  Similarity=0.177  Sum_probs=55.3

Q ss_pred             HHcCCChhhhHHHHHHHHhhh-hhhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhh
Q 016123           42 TLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGN  120 (394)
Q Consensus        42 ~~~g~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  120 (394)
                      +.+++-..|++-+..++.-.. .++.+.|-+.||-|||+..+.    +++-|.+....  .+  ++.+-.+.+.|.+.|+
T Consensus        65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvt----ycitYiLsCiT--Kh--SpqYkVLmVGR~LGGi  136 (454)
T KOG4332|consen   65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT----YCITYILSCIT--KH--SPQYKVLMVGRVLGGI  136 (454)
T ss_pred             hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceee----ehHHHHHHHHh--hc--CCceEEEeehhhhhhH
Confidence            467888888887655544333 468999999999999997654    44455554433  11  2456677789999999


Q ss_pred             hhhhhhhh
Q 016123          121 STTWMNTA  128 (394)
Q Consensus       121 g~g~~~~~  128 (394)
                      ..++.+.+
T Consensus       137 aTsLLFSa  144 (454)
T KOG4332|consen  137 ATSLLFSA  144 (454)
T ss_pred             HHHHHHHH
Confidence            98877643

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=87.41  E-value=9.6  Score=37.42  Aligned_cols=172  Identities=13%  Similarity=-0.003  Sum_probs=89.7

Q ss_pred             HhcccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhhhhhhHhhhh-----ccCchHHHHHHHHHHHHHHHHHHHHH-
Q 016123           26 ISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAFGLLAGLASD-----RIPAPIILLIGSLEGLVGYGAQWLVV-   99 (394)
Q Consensus        26 ~~g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~G~l~D-----r~G~r~~~~~g~~~~~~g~~~~~~~~-   99 (394)
                      .-|..++..--.|.+-+.-|.|-++.+.++.+.. -...-.+...+.|     |+||||.-++=. .+.+|.++..++. 
T Consensus        42 lQGiP~GL~~~iP~lL~ak~vSyt~~a~fS~ay~-P~sLKllWaPiVDs~y~k~~GrrksWvvp~-q~llG~~mllLs~~  119 (510)
T KOG3574|consen   42 LQGIPLGLIGAIPLLLQAKGVSYTSQAIFSFAYW-PFSLKLLWAPIVDSVYSKRFGRRKSWVVPC-QYLLGLFMLLLSYL  119 (510)
T ss_pred             HcCCchhHhhhhHHHhcCCCcchhhhhhhhhhhh-HHHHHHHHHhhhHHHHHHhhccccceeeeh-HHHHHHHHHHHhhC
Confidence            3455555444556676677888888776554332 1112456677777     999999654322 1222333222221 


Q ss_pred             -Hh----ccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhc-ccCCCchHHHHHhhhhhhHHHHHHHHHhhcCC----
Q 016123          100 -SR----KIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNF-RRNRGPVSGILKGYVGLSTAIFTDLCSALFAD----  169 (394)
Q Consensus       100 -~~----~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~F-p~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~----  169 (394)
                       ..    ....++...+....++.-+.++.-..+.=....... |++-|-|.-....|...|.++...++-.+...    
T Consensus       120 v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N  199 (510)
T KOG3574|consen  120 VDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCN  199 (510)
T ss_pred             CCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhh
Confidence             11    111122222222222333343433443334444444 46788888777777777776665444333221    


Q ss_pred             -------------ChhHHHHHHHHHHHHHHHhhhhcccccCCC
Q 016123          170 -------------DPAKFLFMLAIVPFVVCLGAIFFLRETTPA  199 (394)
Q Consensus       170 -------------~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~  199 (394)
                                   ...+++.|-+.+..+...+..++-++.+++
T Consensus       200 ~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~  242 (510)
T KOG3574|consen  200 TYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDES  242 (510)
T ss_pred             HHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh
Confidence                         124677777776666666666666666655

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=86.83  E-value=0.96  Score=45.95  Aligned_cols=57  Identities=21%  Similarity=0.110  Sum_probs=44.3

Q ss_pred             cHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHH
Q 016123           36 YSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGY   92 (394)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~   92 (394)
                      +.+.+-+++|+++++.+.++....+..+ ..|+.|.++||+-.||.+++|..+..+..
T Consensus        33 ll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a   90 (618)
T KOG3762|consen   33 LLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTA   90 (618)
T ss_pred             HHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            3455667899999999997665555554 58999999999999998888877665443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=86.28  E-value=2.3  Score=42.37  Aligned_cols=126  Identities=10%  Similarity=-0.004  Sum_probs=74.2

Q ss_pred             hcHHHHHHHcCCChhhhHHHHHHHHhhh-hhhhhhHhhhhc----cCchHHHH-HHHHHHHHHHHHHHHHHHh-----cc
Q 016123           35 NYSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDR----IPAPIILL-IGSLEGLVGYGAQWLVVSR-----KI  103 (394)
Q Consensus        35 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr----~G~r~~~~-~g~~~~~~g~~~~~~~~~~-----~~  103 (394)
                      .|.+|+.++.|.+..-.+.+=.+..+.. ..+|+.|...||    +||||..+ .+.++..++.++..++..-     ..
T Consensus        53 sy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~  132 (498)
T KOG0637|consen   53 SYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDN  132 (498)
T ss_pred             ccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCC
Confidence            3678888899999876666544455544 459999999997    88888655 4555556777666554210     00


Q ss_pred             CCc-----hHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCc-hHHHHHhhhhhhHHHHH
Q 016123          104 QPL-----SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGP-VSGILKGYVGLSTAIFT  160 (394)
Q Consensus       104 ~~~-----~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~-a~gl~~~~~glg~~i~~  160 (394)
                      ...     ...+..+..-+.=+.......++-........ ++|-+ |.+......++|+.+.-
T Consensus       133 ~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY  196 (498)
T KOG0637|consen  133 ERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGY  196 (498)
T ss_pred             cccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeee
Confidence            001     01111112222223333445566667777773 33333 88888777788876653

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=85.47  E-value=2  Score=43.01  Aligned_cols=121  Identities=18%  Similarity=0.172  Sum_probs=76.5

Q ss_pred             CCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHh-----ccCCchHHHHHHHHHHH
Q 016123           45 NLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSR-----KIQPLSYWQMCVFLCMG  118 (394)
Q Consensus        45 g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~-----~~~~~~~~~l~~~~~l~  118 (394)
                      |+++...+.+...+.++.+. ..+..+..-+..-|+++....++..+..+.....+..     .++  +.+..+.-.++.
T Consensus       251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~--d~~f~lgd~~l~  328 (433)
T PF03092_consen  251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIP--DQWFALGDTILE  328 (433)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcC--CeEEEEEhHHHH
Confidence            37777777766666666554 4566666667788888888777666554432111110     011  111111223455


Q ss_pred             hhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          119 GNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       119 G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      .+-..+.+.+....++|.-|+ .-|+.-++..+...+|..+...+...+.
T Consensus       329 ~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~  378 (433)
T PF03092_consen  329 EVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLM  378 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555566667788889999997 5899999999888888877776665554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=82.95  E-value=3.4  Score=41.15  Aligned_cols=138  Identities=13%  Similarity=0.008  Sum_probs=70.9

Q ss_pred             cccccchhcHHHHHHHcCCChhhhHHHHHHHHhhh-hhhhhhHhhhhccCc-hHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 016123           28 GNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGK-AFGLLAGLASDRIPA-PIILLIGSLEGLVGYGAQWLVVSRKIQP  105 (394)
Q Consensus        28 g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~-r~~~~~g~~~~~~g~~~~~~~~~~~~~~  105 (394)
                      |..|+.+.........-|++....+++.....++. +.+.++|.+.||..- |.++++......++...+... .... .
T Consensus       280 g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~-t~~~-~  357 (480)
T KOG2563|consen  280 GLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTC-TLFL-G  357 (480)
T ss_pred             HHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-hccC-C
Confidence            33455555444333445666677777655544444 558999999999754 445555555544553222211 1111 1


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhhHHHH-HHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          106 LSYWQMCVFLCMGGNSTTWMNTAVLVT-CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~-~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                       ..+.++.-..+.|+.....++...-. +..-||..-|.-.|+....-.+=+.+...+.....+
T Consensus       358 -~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~  420 (480)
T KOG2563|consen  358 -DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAE  420 (480)
T ss_pred             -ceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhh
Confidence             12233332333333322223333322 345689877777888766544444555555555444

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=80.67  E-value=49  Score=33.63  Aligned_cols=127  Identities=9%  Similarity=0.080  Sum_probs=80.9

Q ss_pred             hhhhhHhhhhccCch-------HHHHHHHHHHHHHHHHHHHHHH--hc-cCCchHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 016123           64 FGLLAGLASDRIPAP-------IILLIGSLEGLVGYGAQWLVVS--RK-IQPLSYWQMCVFLCMGGNSTTWMNTAVLVTC  133 (394)
Q Consensus        64 ~~~~~G~l~Dr~G~r-------~~~~~g~~~~~~g~~~~~~~~~--~~-~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~  133 (394)
                      ++|+..++.-|.++|       .=+-+|..+.+.+++.+.....  +. ....+.+++....+++.+|.=+..+.....+
T Consensus       340 ~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~  419 (498)
T COG3104         340 FSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMV  419 (498)
T ss_pred             HHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            466666665553322       3456778888888887766511  11 1113567777777888899877778888999


Q ss_pred             HHhcccC-CCchHHHHHhhhhhhHHHHHHHHHh------hcC-CChhHHHHHHHHHHHHHHHhhh
Q 016123          134 IRNFRRN-RGPVSGILKGYVGLSTAIFTDLCSA------LFA-DDPAKFLFMLAIVPFVVCLGAI  190 (394)
Q Consensus       134 ~~~Fp~~-RG~a~gl~~~~~glg~~i~~~i~~~------~~~-~~~~~~~~~~~~~~~~v~~~~~  190 (394)
                      .+.-|++ .+.+++........|..+...+...      ..+ ....+++..++++..++.....
T Consensus       420 t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~  484 (498)
T COG3104         420 TKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL  484 (498)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            9999975 8999999888887777776665542      111 1223455555555554444433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=80.15  E-value=12  Score=37.06  Aligned_cols=113  Identities=11%  Similarity=-0.029  Sum_probs=68.6

Q ss_pred             ChhhhHHHHHHHHhhhhhhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhh
Q 016123           47 TQLELNNLSVVKDIGKAFGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMN  126 (394)
Q Consensus        47 s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~  126 (394)
                      .+.+.-++.....+|...+=-...+   +-.|++.+...+-..--.+...-+.....  ++.|.+++..+..|+-.|..|
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~---~rir~lwils~LQ~~nl~~~~l~s~~~fi--psi~ivf~lif~eGLlGGa~Y  353 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPF---FRIRRLWILSLLQVINLVFLLLQSWYRFI--PSIWIVFVLIFYEGLLGGASY  353 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceee---eehhhHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHhhhHHH
Confidence            3455556666666665432111122   23466666555433321111111111222  367777767777888888888


Q ss_pred             hhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHH
Q 016123          127 TAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCS  164 (394)
Q Consensus       127 ~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~  164 (394)
                      +-....+.+..| ++|..++|.+..+-++|..+.+.+.-
T Consensus       354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l  392 (402)
T PF02487_consen  354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL  392 (402)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            877877887776 67999999999999988777766543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	394
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 8e-06
 Identities = 50/333 (15%), Positives = 102/333 (30%), Gaps = 105/333 (31%)

Query: 13  KWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSV--VKDIGKAFGLLAGL 70
           K+L  ++ +  +    +  T   Y +    L N  Q+     +V  ++   K   L   L
Sbjct: 92  KFL--MSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQV-FAKYNVSRLQPYLK---LRQAL 144

Query: 71  ASDRIPAPIILLIGSLEGLVGYGAQWLVV----SRKIQPLSYWQMCVFLCMGGNSTTWMN 126
              R PA  +L+    +G++G G  W+ +    S K+Q    ++  +F         W+ 
Sbjct: 145 LELR-PAKNVLI----DGVLGSGKTWVALDVCLSYKVQCKMDFK--IF---------WL- 187

Query: 127 TAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLF---------M 177
                    N +    P + +L+    L   I  +  S        K            +
Sbjct: 188 ---------NLKNCNSPET-VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 178 LAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYF-------------SIINTVAIVVAL 224
           L   P+  CL     L        V +  +    F              + + ++     
Sbjct: 238 LKSKPYENCL---LVLLN------V-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 225 YLQVYDFLP--NKSETLALIFSGILII---------LLASPVAIPVYS-----FIKSW-- 266
           ++ +          E  +L     L           L  +P  + + +      + +W  
Sbjct: 288 HISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 267 ----NLNRKRT---------EPDVEEQQVVEPL 286
               N ++  T         EP  E +++ + L
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPA-EYRKMFDRL 378

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	394
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.89
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.86
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.8
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.76
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.67
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.5
2xut_A	524	Proton/peptide symporter family protein; transport	99.44
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.03
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.91
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.81
2xut_A	524	Proton/peptide symporter family protein; transport	98.2
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.19

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.89  E-value=3.4e-22  Score=196.73  Aligned_cols=293  Identities=13%  Similarity=0.065  Sum_probs=196.2

Q ss_pred             CCCcHHHHHHHHHHHHHhcc-cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHH
Q 016123           10 SAGKWLGFVTAVWVQAISGN-NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLE   87 (394)
Q Consensus        10 ~~~~w~~l~~~~~~~~~~g~-~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~   87 (394)
                      .+++|..+....+..+..+. .+.++.+.|.+++++|+|..+.+++.+...++.. ..++.|++.||+|||++++++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~  100 (438)
T 3o7q_A           21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL  100 (438)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence            34455555544444444443 3566778899999999999999998787777776 489999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhh
Q 016123           88 GLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSAL  166 (394)
Q Consensus        88 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~  166 (394)
                      .+++.++......    .++++.+++.|++.|++.+..+++....+.+++| ++|+.++|+..++.++|..+.+.+...+
T Consensus       101 ~~~~~~~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  176 (438)
T 3o7q_A          101 YALGAALFWPAAE----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHhccc----cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988743211    1478889999999999999988888999999998 5799999999999999999999887776


Q ss_pred             c-CCChh-HHHHHHHHHHHHHHHhhhhcccccCCCCCc--cccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHH
Q 016123          167 F-ADDPA-KFLFMLAIVPFVVCLGAIFFLRETTPASTV--DEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALI  242 (394)
Q Consensus       167 ~-~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  242 (394)
                      . +.... .--.                ....++....  ......+||..+...+.+.                     
T Consensus       177 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~---------------------  219 (438)
T 3o7q_A          177 ILSNVPHQSQDV----------------LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIV---------------------  219 (438)
T ss_dssp             HHTSSCCCCHHH----------------HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred             Hhcccccccccc----------------cccCCcchhhhhhhhhhhhHHHHHHHHHHHH---------------------
Confidence            5 32100 0000                0000000000  0000122555443222110                     


Q ss_pred             HHHHHHHHHHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCc
Q 016123          243 FSGILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGED  322 (394)
Q Consensus       243 ~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (394)
                            +++.....      .. +.|++++         +.++   +               ++       +    ....
T Consensus       220 ------~~~~~~~~------~~-~~p~~~~---------~~~~---~---------------~~-------~----~~~~  248 (438)
T 3o7q_A          220 ------LLVALLIM------LT-KFPALQS---------DNHS---D---------------AK-------Q----GSFS  248 (438)
T ss_dssp             ------HHHHHHHH------HC-CCCCCTT---------TCCC---C---------------SS-------T----TSHH
T ss_pred             ------HHHHHHHH------HH-cCCcccc---------cccc---c---------------cc-------c----cchh
Confidence                  00001100      11 1111110         0000   0               00       0    0012


Q ss_pred             chHHHHhhchhHHHHHHHHHhcccceeeeeeChHHH-HHHh-CCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          323 HTIFEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQI-GLAL-GYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       323 ~t~~~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i-~~~~-G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      .+.++.+|+|.+|...+..++..+....+...++.+ .++. |.+  ++....++..+.+.+|+++.|+++||++|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~  324 (438)
T 3o7q_A          249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP  324 (438)
T ss_dssp             HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            467889999999999999888888777788888888 8776 876  36678888999999999999999999975

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.86  E-value=5.4e-22  Score=195.85  Aligned_cols=285  Identities=12%  Similarity=0.002  Sum_probs=191.2

Q ss_pred             cHHHHHHHHHHHHHhc-ccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHH
Q 016123           13 KWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLV   90 (394)
Q Consensus        13 ~w~~l~~~~~~~~~~g-~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~   90 (394)
                      +|..+....+..+..+ ..+.++.+.|.+.+++ ++..+.+++.+...++... +++.|++.||+|+|++++++.++.++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~  104 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  104 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence            4555555555544433 3466778888899999 9999999987777777765 89999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123           91 GYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (394)
Q Consensus        91 g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~  169 (394)
                      +.++.++.... .  ++++.+++.+++.|++.+..+++....+.+++| ++|++++|+...+.++|..+.+.+...+.+ 
T Consensus       105 ~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-  180 (451)
T 1pw4_A          105 VMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA-  180 (451)
T ss_dssp             HHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH-
T ss_pred             HHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            99888761100 0  357778889999999999888888899999998 569999999999999999988887766543 


Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhcccccCCCCCcccccccc-chhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHH
Q 016123          170 DPAKFLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEA-KYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILI  248 (394)
Q Consensus       170 ~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (394)
                                                           ..+ ||..+...+.+.+...                       
T Consensus       181 -------------------------------------~~g~w~~~f~~~~~~~~~~~-----------------------  200 (451)
T 1pw4_A          181 -------------------------------------WFNDWHAALYMPAFCAILVA-----------------------  200 (451)
T ss_dssp             -------------------------------------HTCCSTTCTHHHHHHHHHHH-----------------------
T ss_pred             -------------------------------------HhccHHHHHHHHHHHHHHHH-----------------------
Confidence                                                 233 5554432221100000                       


Q ss_pred             HHHHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHH
Q 016123          249 ILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEA  328 (394)
Q Consensus       249 ~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  328 (394)
                      + + .-..      ++ +++++.+.. +.+   +.+.   +.+        ++  .+.+      ++++...++...++.
T Consensus       201 ~-~-~~~~------~~-~~~~~~~~~-~~~---~~~~---~~~--------~~--~~~~------~~~~~~~~~~~~~~~  248 (451)
T 1pw4_A          201 L-F-AFAM------MR-DTPQSCGLP-PIE---EYKN---DYP--------DD--YNEK------AEQELTAKQIFMQYV  248 (451)
T ss_dssp             H-H-HHHH------CC-CSSTTTCCC-SCT---TTCC---C-----------------------------CCTHHHHHHT
T ss_pred             H-H-HHhh------cc-CCHhhcCCC-Chh---hhcc---ccc--------cc--chhh------hhcccccccchHHHH
Confidence            0 0 0000      11 111110000 000   0000   000        00  0000      000111123346788


Q ss_pred             hhchhHHHHHHHHHhcccceeeeeeChHHHHHH-hCCCc--chhhHHHHHHHHHHhhhhhccccchh--cC
Q 016123          329 MWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLA-LGYVD--VSIFVSLTSIWGFFGRIISGSVSEYF--IK  394 (394)
Q Consensus       329 l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~-~G~~~--~a~~vsl~si~~~~GRl~~G~lsD~~--~r  394 (394)
                      +|++.+|.+.+..++.......+...++.+.++ .|.++  .....++.++++.+|+++.|+++||+  +|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~  319 (451)
T 1pw4_A          249 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN  319 (451)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999998888877766777888888887 67763  56788899999999999999999998  65

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.80  E-value=1.5e-19  Score=174.58  Aligned_cols=243  Identities=13%  Similarity=0.046  Sum_probs=176.5

Q ss_pred             ccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHH
Q 016123           31 YTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYW  109 (394)
Q Consensus        31 y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  109 (394)
                      ..+....|.+.+++|+|..+.+++.+...++.. ..++.|++.||+|||+++.++.++.+++..+..+.       ++++
T Consensus        17 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~   89 (375)
T 2gfp_A           17 TIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSLT   89 (375)
T ss_dssp             HHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred             HHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccHH
Confidence            445566788899999999999998777777775 48999999999999999999999999998887764       4678


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 016123          110 QMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCLG  188 (394)
Q Consensus       110 ~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~  188 (394)
                      .+++.+++.|++.+..++.....+.+++| ++|+++.++...+.++|..+.+.+...+.+                    
T Consensus        90 ~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~--------------------  149 (375)
T 2gfp_A           90 VLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT--------------------  149 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC--------------------
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------------------
Confidence            88889999999999888888899999998 579999999999999999988888766653                    


Q ss_pred             hhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHHHHHHHhhhhhccccccccccc
Q 016123          189 AIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSGILIILLASPVAIPVYSFIKSWNL  268 (394)
Q Consensus       189 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~  268 (394)
                                        ..+||..+...+.+                           .++....    ....++    
T Consensus       150 ------------------~~~~~~~~~~~~~~---------------------------~~~~~~~----~~~~~~----  176 (375)
T 2gfp_A          150 ------------------MWNWRACYLFLLVL---------------------------CAGVTFS----MARWMP----  176 (375)
T ss_dssp             ------------------HHHHHHHHHHHHHH---------------------------HHHHHCC----CCCSSC----
T ss_pred             ------------------hccHHHHHHHHHHH---------------------------HHHHHHH----HHHHCc----
Confidence                              24566544322110                           0000010    000011    


Q ss_pred             ccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchHHHHhhchhHHHHHHHHHhcccce
Q 016123          269 NRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTIFEAMWTVDFWILFVSFLCGVGTG  348 (394)
Q Consensus       269 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~t~~Fwll~~~~~~~~g~g  348 (394)
                      ++++          .++   +               ++       +      ...+.++.+|+|++|.+.+..++.....
T Consensus       177 ~~~~----------~~~---~---------------~~-------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (375)
T 2gfp_A          177 ETRP----------VDA---P---------------RT-------R------LLTSYKTLFGNSGFNCYLLMLIGGLAGI  215 (375)
T ss_dssp             CCST----------TTC---C---------------CC-------C------TTTCSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCC----------CCc---c---------------cc-------c------HHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence            0100          000   0               00       0      0123467889999999988888776666


Q ss_pred             eeeeeChHHHHHH-hCCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          349 LAVMNNMGQIGLA-LGYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       349 ~~~~~n~~~i~~~-~G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      ..+....+.+.++ .|.+  +.....++.+++..+++++.|++.||++|
T Consensus       216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~  264 (375)
T 2gfp_A          216 AAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  264 (375)
T ss_dssp             HHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666666 6665  35677888899999999999999999864

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.76  E-value=5.4e-19  Score=176.62  Aligned_cols=169  Identities=13%  Similarity=0.057  Sum_probs=131.2

Q ss_pred             hhcHHHHHHHcCC--------ChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhcc-
Q 016123           34 SNYSDALKTLMNL--------TQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKI-  103 (394)
Q Consensus        34 ~~~~~~l~~~~g~--------s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~-  103 (394)
                      +...|.++++++.        +.++.+++.+...+|..+ +++.|++.||+|||++++++.+++.++.++.++...... 
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~  111 (491)
T 4gc0_A           32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTS  111 (491)
T ss_dssp             GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSC
T ss_pred             HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            4456777777643        234556666777778765 789999999999999999999999999888764210000 


Q ss_pred             ----------CCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhcc-cCCCchHHHHHhhhhhhHHHHHHHHHhhcC----
Q 016123          104 ----------QPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFR-RNRGPVSGILKGYVGLSTAIFTDLCSALFA----  168 (394)
Q Consensus       104 ----------~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~RG~a~gl~~~~~glg~~i~~~i~~~~~~----  168 (394)
                                .+++++++++.|++.|+|.|..++....+++|+.| ++||+..++...+..+|..+...+......    
T Consensus       112 ~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  191 (491)
T 4gc0_A          112 INPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA  191 (491)
T ss_dssp             SSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             hcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccc
Confidence                      01478899999999999999988889999999998 579999999999888887776665544332    


Q ss_pred             ----CChhHHHHHHHHHHHHHHHhhhhcccccCCCCCc
Q 016123          169 ----DDPAKFLFMLAIVPFVVCLGAIFFLRETTPASTV  202 (394)
Q Consensus       169 ----~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~  202 (394)
                          ...|+++...+.++.++.++..+++||+|++...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~  229 (491)
T 4gc0_A          192 SWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMS  229 (491)
T ss_dssp             TTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHH
T ss_pred             ccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHH
Confidence                2467888888899999999999999999987654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.67  E-value=7.2e-16  Score=154.01  Aligned_cols=149  Identities=15%  Similarity=0.103  Sum_probs=119.3

Q ss_pred             HHHHHH-----cCCChhhhHHHHHHHHhhhhh-hhhhHhhhhc-cCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHH
Q 016123           38 DALKTL-----MNLTQLELNNLSVVKDIGKAF-GLLAGLASDR-IPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQ  110 (394)
Q Consensus        38 ~~l~~~-----~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr-~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  110 (394)
                      +.++++     +|+|..+.+++.+...++..+ +++.|++.|| +|||+++.++.++.+++.++++++       ++++.
T Consensus        38 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~~  110 (491)
T 4aps_A           38 YYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-------FGASA  110 (491)
T ss_dssp             HHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-------CSTTH
T ss_pred             HHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-------hhHHH
Confidence            334555     999999999987777777764 8999999999 899999999999999998876542       46778


Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHhcc-cC--CCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 016123          111 MCVFLCMGGNSTTWMNTAVLVTCIRNFR-RN--RGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVVCL  187 (394)
Q Consensus       111 l~~~~~l~G~g~g~~~~~~~~~~~~~Fp-~~--RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v~~  187 (394)
                      +++.+++.|+|.+...++....+.+++| ++  |+.+.++...+..+|..+.+.+...+.+...|+..+.+..+..++++
T Consensus       111 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  190 (491)
T 4aps_A          111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGL  190 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            8889999999999888888899999998 45  77788888899999999999888887765556666666655555555


Q ss_pred             hhhhcc
Q 016123          188 GAIFFL  193 (394)
Q Consensus       188 ~~~~~~  193 (394)
                      +..++.
T Consensus       191 ~~~~~~  196 (491)
T 4aps_A          191 LVYYFG  196 (491)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.50  E-value=1.4e-14  Score=142.32  Aligned_cols=127  Identities=14%  Similarity=0.097  Sum_probs=83.2

Q ss_pred             cHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHH-HHHhccCCchH-HHHH
Q 016123           36 YSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWL-VVSRKIQPLSY-WQMC  112 (394)
Q Consensus        36 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~-~~~~~~~~~~~-~~l~  112 (394)
                      +...+++++|+|..+.+++.+...++... +++.|++.||+|||++++++.++.+++...... ...     +.. ..+.
T Consensus        30 ~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  104 (417)
T 2cfq_A           30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG-----PLLQYNIL  104 (417)
T ss_dssp             HHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH-----HHHHTTCC
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence            33336778999999999977777777754 899999999999999999988876543221111 000     000 0122


Q ss_pred             HHHHHHhhhhhhhhhhHHHHHHHhcc---cCCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123          113 VFLCMGGNSTTWMNTAVLVTCIRNFR---RNRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus       113 ~~~~l~G~g~g~~~~~~~~~~~~~Fp---~~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      ..+++.+.+.+..+.+.......+.+   ++||.+.|....+..+|..+.+.+...+.
T Consensus       105 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~  162 (417)
T 2cfq_A          105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF  162 (417)
T ss_dssp             HHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555544444444555554   45798999998888898888887766554

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.44  E-value=1.9e-12  Score=130.30  Aligned_cols=148  Identities=18%  Similarity=0.041  Sum_probs=118.7

Q ss_pred             HHHHHHcC------CChhhhHHHHHHHHhhhhh-hhhhHhhhhcc-CchHHHHHHHHHHHHHHHHHHHHHHhccCCc-hH
Q 016123           38 DALKTLMN------LTQLELNNLSVVKDIGKAF-GLLAGLASDRI-PAPIILLIGSLEGLVGYGAQWLVVSRKIQPL-SY  108 (394)
Q Consensus        38 ~~l~~~~g------~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~-G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~-~~  108 (394)
                      +.+++++|      ++..+.+++.+...++..+ .++.|++.||+ |+|+++.++.++.+++.++..++       + ++
T Consensus        37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~~  109 (524)
T 2xut_A           37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-------EHSV  109 (524)
T ss_dssp             HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-------SSCH
T ss_pred             HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-------cccH
Confidence            34678899      9999999987777777764 89999999999 99999999999999988877653       3 67


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHH---HHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 016123          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGI---LKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFV  184 (394)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl---~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~  184 (394)
                      +.+++.+++.|++.+...++....+.+++|+ +||++.++   ...+..+|..+.+.+...+.+...|+..+.+..+..+
T Consensus       110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~  189 (524)
T 2xut_A          110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMF  189 (524)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            8888889999999998888888999999985 69887777   8888899999988887777665556666665555555


Q ss_pred             HHHhhhhc
Q 016123          185 VCLGAIFF  192 (394)
Q Consensus       185 v~~~~~~~  192 (394)
                      +.++..++
T Consensus       190 ~~~~~~~~  197 (524)
T 2xut_A          190 VATVFFWL  197 (524)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHH
Confidence            55554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.03  E-value=8.4e-10  Score=108.19  Aligned_cols=157  Identities=10%  Similarity=-0.014  Sum_probs=110.8

Q ss_pred             ccchhcHHHHHH-HcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhcc--CchHHHHHHHHHHH-HHHHHHHHHHHhccCC
Q 016123           31 YTFSNYSDALKT-LMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRI--PAPIILLIGSLEGL-VGYGAQWLVVSRKIQP  105 (394)
Q Consensus        31 y~~~~~~~~l~~-~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~--G~r~~~~~g~~~~~-~g~~~~~~~~~~~~~~  105 (394)
                      +.+..+.|.+.+ .+|++..+.+++.....++... .++.|++.||+  |+|+.+.++..+.. ++.+++.+.     +.
T Consensus       269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  343 (451)
T 1pw4_A          269 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-----PA  343 (451)
T ss_dssp             HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----CT
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-----cc
Confidence            445566676644 4899999999976666666654 78999999999  99999988877766 565544321     11


Q ss_pred             chHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhh-hHHHHHHHHHhhcCCChhHHHHHHHHHHH
Q 016123          106 LSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGL-STAIFTDLCSALFADDPAKFLFMLAIVPF  183 (394)
Q Consensus       106 ~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~gl-g~~i~~~i~~~~~~~~~~~~~~~~~~~~~  183 (394)
                      .+.+.+.+..++.|++.+..+......+.+.+|+ +||++.|+......+ |+.+.+.+...+.+....+..+.+..+..
T Consensus       344 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  423 (451)
T 1pw4_A          344 GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGS  423 (451)
T ss_dssp             TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            2455566666777777776666667888999996 599999999999999 99999998888877544444444333333


Q ss_pred             HHHHhhhhc
Q 016123          184 VVCLGAIFF  192 (394)
Q Consensus       184 ~v~~~~~~~  192 (394)
                      +++.+..+.
T Consensus       424 ~~~~~~~~~  432 (451)
T 1pw4_A          424 ILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            344333333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.96  E-value=2.1e-08  Score=99.48  Aligned_cols=166  Identities=12%  Similarity=0.080  Sum_probs=107.5

Q ss_pred             cccchhcHHHHHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123           30 NYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (394)
Q Consensus        30 ~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  108 (394)
                      .+....|.+.+.+..+.+..+.........+... ..++++++.||+|||+.++.+.....++.+..........  ...
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~--~~~  370 (491)
T 4gc0_A          293 INVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA--PGI  370 (491)
T ss_dssp             HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC--CHH
T ss_pred             hhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc--chH
Confidence            3455567788888888888776665555445554 4789999999999999999999988888777665433321  122


Q ss_pred             H-HHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCC-------ChhHHHHHHH
Q 016123          109 W-QMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFAD-------DPAKFLFMLA  179 (394)
Q Consensus       109 ~-~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~-------~~~~~~~~~~  179 (394)
                      . .+.+..+..+.+.+.. +....+.+|.||. .|++++|+..+...+++.+.+.+...+.+.       .....+++.+
T Consensus       371 ~~~~~~~~~~~~~~~~~~-~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~  449 (491)
T 4gc0_A          371 VALLSMLFYVAAFAMSWG-PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYG  449 (491)
T ss_dssp             HHHHHHHHHHHHHHTTTT-HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            2 2222233333333332 3456778899995 599999999998889988887766554432       1122334445


Q ss_pred             HHHHHHHHhhhhcccccCC
Q 016123          180 IVPFVVCLGAIFFLRETTP  198 (394)
Q Consensus       180 ~~~~~v~~~~~~~~~~~p~  198 (394)
                      ++..+..+...+++||...
T Consensus       450 ~~~~~~~i~~~~~~PETkg  468 (491)
T 4gc0_A          450 CMGVLAALFMWKFVPETKG  468 (491)
T ss_dssp             HHHHHHHHHHHHHCCCCTT
T ss_pred             HHHHHHHHHHHheecCCCC
Confidence            5555555555666665443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.95  E-value=3.9e-09  Score=104.93  Aligned_cols=163  Identities=5%  Similarity=-0.053  Sum_probs=105.6

Q ss_pred             cHHH-HHHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHH-----HHHHHHHHHHHHHHHHHHhc--cCCc
Q 016123           36 YSDA-LKTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILL-----IGSLEGLVGYGAQWLVVSRK--IQPL  106 (394)
Q Consensus        36 ~~~~-l~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~-----~g~~~~~~g~~~~~~~~~~~--~~~~  106 (394)
                      +.+. .++.++.+..+.+++.....++.. .+++.|++.||+|+|+...     ++.++.++++.+........  ....
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (491)
T 4aps_A          305 VLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKV  384 (491)
T ss_dssp             HHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTC
T ss_pred             HHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            3343 455577775566664444444444 4789999999999987655     77777777776665432110  0012


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 016123          107 SYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFADDPAKFLFMLAIVPFVV  185 (394)
Q Consensus       107 ~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~~~~~~~~~~~~~~~~~v  185 (394)
                      +.+.+.+..++.|++.+..++.....+.+.+|+ +||.+.|+......+|+.+.+.+...+.+......+...+++..+.
T Consensus       385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (491)
T 4aps_A          385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVL  464 (491)
T ss_dssp             CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            445555666778888888777788889999995 5999999999999999999988877666555555555566665555


Q ss_pred             HHhhhhcccccCC
Q 016123          186 CLGAIFFLRETTP  198 (394)
Q Consensus       186 ~~~~~~~~~~~p~  198 (394)
                      .++..++.|+..+
T Consensus       465 ~~~~~~~~~~~~~  477 (491)
T 4aps_A          465 GIVLVFLSKRIQG  477 (491)
T ss_dssp             HHHHHHC------
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555554443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.91  E-value=1.1e-08  Score=99.87  Aligned_cols=130  Identities=9%  Similarity=-0.056  Sum_probs=96.4

Q ss_pred             ccchhcHHHH-H-HHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCch
Q 016123           31 YTFSNYSDAL-K-TLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLS  107 (394)
Q Consensus        31 y~~~~~~~~l-~-~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~  107 (394)
                      +.+..+.|.+ . +.+|++..+.+++.....++... .++.|++.||+|+|+++.++.++..++.++..+.       ++
T Consensus       275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~  347 (438)
T 3o7q_A          275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------GG  347 (438)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------CH
T ss_pred             HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------CC
Confidence            3444555655 4 45599999999976666666654 7899999999999999999998888887765542       23


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcCC
Q 016123          108 YWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFAD  169 (394)
Q Consensus       108 ~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~~  169 (394)
                      .+.+. ..++.|++.+..++.......+.+|++|+.+.++... ..+|+.+.+.+...+.+.
T Consensus       348 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~g~l~~~  407 (438)
T 3o7q_A          348 HVGLI-ALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDA  407 (438)
T ss_dssp             HHHHH-HHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHHH-TTHHHHHHHHHHHHHHHH
T ss_pred             cHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence            33333 3356677777777777777789999889999998884 458888888888877754

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.81  E-value=1.4e-08  Score=99.30  Aligned_cols=141  Identities=12%  Similarity=0.103  Sum_probs=90.1

Q ss_pred             hhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhh
Q 016123           50 ELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTA  128 (394)
Q Consensus        50 ~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~  128 (394)
                      +.+++.....++.. ..++.|++.||+|+|+++.++.++.++++....+.       ++.+.+.+..++.+++.+.....
T Consensus       260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~  332 (417)
T 2cfq_A          260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------TSALEVVILKTLHMFEVPFLLVG  332 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------CSHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444334443 47899999999999999998888887776554321       24455555555555555544455


Q ss_pred             HHHHHHHhccc-CCCchHHHH-HhhhhhhHHHHHHHHHhhcCCChhHHHH-HHHHHHHHHHHhhhhcccccC
Q 016123          129 VLVTCIRNFRR-NRGPVSGIL-KGYVGLSTAIFTDLCSALFADDPAKFLF-MLAIVPFVVCLGAIFFLRETT  197 (394)
Q Consensus       129 ~~~~~~~~Fp~-~RG~a~gl~-~~~~glg~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~p  197 (394)
                      ......+.+|+ .||++.|+. ....++|+.+.+.+...+.+.......+ +.+++..+..++..+..|+.+
T Consensus       333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            56788899995 699999995 7778899999988888776543333333 333333333333444455433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.20  E-value=8.5e-06  Score=81.42  Aligned_cols=104  Identities=7%  Similarity=-0.090  Sum_probs=70.0

Q ss_pred             hhhhHhhh----hccCc----hHHHHHHHHHHHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 016123           65 GLLAGLAS----DRIPA----PIILLIGSLEGLVGYGAQWLVVSRK--IQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCI  134 (394)
Q Consensus        65 ~~~~G~l~----Dr~G~----r~~~~~g~~~~~~g~~~~~~~~~~~--~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~  134 (394)
                      +++.+++.    ||.|+    ++.+.+|.++.+++++++.......  ....+.+.+.+..++.|++.+..+........
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  431 (524)
T 2xut_A          352 IPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAY  431 (524)
T ss_dssp             GGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred             HHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666654    55543    4567778777777776654321000  00124455566677888888877777778888


Q ss_pred             Hhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          135 RNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       135 ~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      +.+|+ +||+++|+..+..++|+.+.+.+...+.+
T Consensus       432 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          432 SQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99984 69999999999999999999998887765

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.19  E-value=9.8e-08  Score=91.28  Aligned_cols=129  Identities=13%  Similarity=0.142  Sum_probs=87.5

Q ss_pred             hcHHHH-HHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHH-HHHHHHHHHHHHHhccCCchHHHH
Q 016123           35 NYSDAL-KTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLE-GLVGYGAQWLVVSRKIQPLSYWQM  111 (394)
Q Consensus        35 ~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~-~~~g~~~~~~~~~~~~~~~~~~~l  111 (394)
                      .+.|.+ ++++|++..+.+++.....++... .++.|++.||+|+|.  ..+... ...+..........   .++.+.+
T Consensus       220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  294 (375)
T 2gfp_A          220 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFG---VMNVWTL  294 (375)
T ss_dssp             HHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHH---HHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc---cccHHHH
Confidence            334443 556888988888876666666654 789999999998733  333333 22232221111100   0245555


Q ss_pred             HHHHHHHhhhhhhhhhhHHHHHHHhcccCCCchHHHHHhhhhhhHHHHHHHHHhhcC
Q 016123          112 CVFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCSALFA  168 (394)
Q Consensus       112 ~~~~~l~G~g~g~~~~~~~~~~~~~Fp~~RG~a~gl~~~~~glg~~i~~~i~~~~~~  168 (394)
                      ++..++.|++.+..++.......+.+|++||++.|+......+|+.+.+.+...+.+
T Consensus       295 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  351 (375)
T 2gfp_A          295 LVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQ  351 (375)
T ss_dssp             HHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            566677788888877778888899999889999999999988888887777666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	394
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.87
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.47
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.01
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.71

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.6e-22  Score=196.33  Aligned_cols=286  Identities=16%  Similarity=0.093  Sum_probs=187.0

Q ss_pred             CCcHHHHHHHHHHHHHhc-ccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHHH
Q 016123           11 AGKWLGFVTAVWVQAISG-NNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLEG   88 (394)
Q Consensus        11 ~~~w~~l~~~~~~~~~~g-~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~~   88 (394)
                      +.||.++...++...... ....+++..|.++ |+|+|.+|++++.+...++..+ +++.|++.||+|||+++.++.++.
T Consensus        21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~   99 (447)
T d1pw4a_          21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA   99 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            346877776665544332 2356677777665 6899999999987777777764 899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHHHHHHHhhc
Q 016123           89 LVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIFTDLCSALF  167 (394)
Q Consensus        89 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~~~i~~~~~  167 (394)
                      +++.++.+++... .  .+++.+++.+++.|++.+..+.+....+.+|+|+ +||+++|+...+..+|..+.+.+.....
T Consensus       100 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~  176 (447)
T d1pw4a_         100 AAVMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  176 (447)
T ss_dssp             HHHHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHhhccccchh-h--hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence            9988877654211 0  2466778889999999998888888999999985 6999999999999999888877665543


Q ss_pred             CC-ChhH-HHHHHHHHHHHHHHhhhhcccccCCCCCccccccccchhHhHHHHHHHHHHHHHHHhhccCCCcchhHHHHH
Q 016123          168 AD-DPAK-FLFMLAIVPFVVCLGAIFFLRETTPASTVDEEKEEAKYFSIINTVAIVVALYLQVYDFLPNKSETLALIFSG  245 (394)
Q Consensus       168 ~~-~~~~-~~~~~~~~~~~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  245 (394)
                      .. ..|+ .+...++...+..++..++++++|++..                                            
T Consensus       177 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------  212 (447)
T d1pw4a_         177 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCG--------------------------------------------  212 (447)
T ss_dssp             HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTC--------------------------------------------
T ss_pred             hhhhcccccchhhhhhHHHHHHHHHHhcccchhhcc--------------------------------------------
Confidence            21 1111 1111111111222222222222221100                                            


Q ss_pred             HHHHHHHhhhhhcccccccccccccCCCCCCchhhhcccCCCCCCCCCCccchhhhcchhhhhhhhhcccCCCCCCcchH
Q 016123          246 ILIILLASPVAIPVYSFIKSWNLNRKRTEPDVEEQQVVEPLLNGETTGTEEVVAVEDTVVAVVAVEEVKRRPVLGEDHTI  325 (394)
Q Consensus       246 ~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  325 (394)
                                                 . .+.++.+...+   ++             .+++      .++....++...
T Consensus       213 ---------------------------~-~~~~~~~~~~~---~~-------------~~~~------~~~~~~~~~~~~  242 (447)
T d1pw4a_         213 ---------------------------L-PPIEEYKNDYP---DD-------------YNEK------AEQELTAKQIFM  242 (447)
T ss_dssp             ---------------------------C-CSCTTTCCC-----------------------------------CCTHHHH
T ss_pred             ---------------------------c-chhhhhhhhcc---cc-------------hhhc------cccccchhhHHH
Confidence                                       0 00000000000   00             0000      000111234567


Q ss_pred             HHHhhchhHHHHHHHHHhcccceeeeeeChHHHHHHh-CCC--cchhhHHHHHHHHHHhhhhhccccchhcC
Q 016123          326 FEAMWTVDFWILFVSFLCGVGTGLAVMNNMGQIGLAL-GYV--DVSIFVSLTSIWGFFGRIISGSVSEYFIK  394 (394)
Q Consensus       326 ~~~l~t~~Fwll~~~~~~~~g~g~~~~~n~~~i~~~~-G~~--~~a~~vsl~si~~~~GRl~~G~lsD~~~r  394 (394)
                      ++.++++.+|.+....++.......+.+..+.+.++. |.+  +.....++..+.+.+|+++.|+++||++|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  314 (447)
T d1pw4a_         243 QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR  314 (447)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             HHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccc
Confidence            7889999999999988887777666666666666653 555  36678889999999999999999999875

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.7e-13  Score=128.87  Aligned_cols=154  Identities=15%  Similarity=0.111  Sum_probs=95.0

Q ss_pred             CCCCcHHHHHHHHHHHHHhcccccchhcHHHHHHHcCCChhhhHHHHHHHHhhhhh-hhhhHhhhhccCchHHHHHHHHH
Q 016123            9 SSAGKWLGFVTAVWVQAISGNNYTFSNYSDALKTLMNLTQLELNNLSVVKDIGKAF-GLLAGLASDRIPAPIILLIGSLE   87 (394)
Q Consensus         9 ~~~~~w~~l~~~~~~~~~~g~~y~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~~~~~g~~~   87 (394)
                      .+++.|...+..+...+..+..  ++.+...+++++|+|.+|++++.+...++..+ +++.|++.||+|||++++++...
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~--~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~   82 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAY--FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITG   82 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            4556676555444444333321  22233346888999999999987777777764 89999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhhhhHHHHHHHhc-c--cCCCchHHHHHhhhhhhHHHHHHHHH
Q 016123           88 GLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMNTAVLVTCIRNF-R--RNRGPVSGILKGYVGLSTAIFTDLCS  164 (394)
Q Consensus        88 ~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~~~~~~~~~~~F-p--~~RG~a~gl~~~~~glg~~i~~~i~~  164 (394)
                      ..++...........   .......+.+.+.+.+.+....+......... +  +++..+.+......+.+..+.+.+..
T Consensus        83 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (417)
T d1pv7a_          83 MLVMFAPFFIFIFGP---LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             HHHTHHHHHHHTHHH---HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhh---hHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccc
Confidence            888777766542110   01111223444455444444444443333333 2  34677777777777777666666555


Q ss_pred             hhc
Q 016123          165 ALF  167 (394)
Q Consensus       165 ~~~  167 (394)
                      .+.
T Consensus       160 ~l~  162 (417)
T d1pv7a_         160 IMF  162 (417)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=2.5e-10  Score=106.61  Aligned_cols=145  Identities=12%  Similarity=0.115  Sum_probs=107.2

Q ss_pred             hhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhhhhhhh
Q 016123           48 QLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSYWQMCVFLCMGGNSTTWMN  126 (394)
Q Consensus        48 ~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~G~g~g~~~  126 (394)
                      ....+.......++.. ...+.+++.||+|+|+++.++.++.+++.....+.       ++.+.+.+..++.|++.+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~  330 (417)
T d1pv7a_         258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------TSALEVVILKTLHMFEVPFLL  330 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC-------CCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc-------cccchhhHHHHHHHHHHHHHH
Confidence            3344444444444444 47899999999999999999999988887776542       356777777788888888888


Q ss_pred             hhHHHHHHHhccc-CCCchHHHH-HhhhhhhHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHhhhhcccccCCC
Q 016123          127 TAVLVTCIRNFRR-NRGPVSGIL-KGYVGLSTAIFTDLCSALFAD-DPAKFLFMLAIVPFVVCLGAIFFLRETTPA  199 (394)
Q Consensus       127 ~~~~~~~~~~Fp~-~RG~a~gl~-~~~~glg~~i~~~i~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~  199 (394)
                      +.....+.+.+|+ +||++.|+. ....++|..+.+.+...+.+. +....+++.+++..+..++..+++|.+.+.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  406 (417)
T d1pv7a_         331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred             HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            8888889999985 699999985 456778999999888887764 334455666667777777777777655444

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=4e-08  Score=93.24  Aligned_cols=141  Identities=10%  Similarity=-0.066  Sum_probs=90.0

Q ss_pred             ccchhcHHHH-HHHcCCChhhhHHHHHHHHhhhh-hhhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHhccCCchH
Q 016123           31 YTFSNYSDAL-KTLMNLTQLELNNLSVVKDIGKA-FGLLAGLASDRIPAPIILLIGSLEGLVGYGAQWLVVSRKIQPLSY  108 (394)
Q Consensus        31 y~~~~~~~~l-~~~~g~s~~~~~~~~~~~~~~~~-~~~~~G~l~Dr~G~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~  108 (394)
                      +....+.+.+ ++.++++..+.++......+... ..++.|++.||+++|+..........+........  ......+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  343 (447)
T d1pw4a_         266 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY--WMNPAGNP  343 (447)
T ss_dssp             HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT--TSCCTTCH
T ss_pred             hcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHH--HhcccccH
Confidence            4444455554 67789999999886666666655 47899999999998775555444443332222221  11111345


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHhccc-CCCchHHHHHhhhhhhHHHH-HHHHHhhcCCChhH
Q 016123          109 WQMCVFLCMGGNSTTWMNTAVLVTCIRNFRR-NRGPVSGILKGYVGLSTAIF-TDLCSALFADDPAK  173 (394)
Q Consensus       109 ~~l~~~~~l~G~g~g~~~~~~~~~~~~~Fp~-~RG~a~gl~~~~~glg~~i~-~~i~~~~~~~~~~~  173 (394)
                      +...+..++.|++.+...........+.+|+ +||++.|+......+++.+. +.+...+.+...+.
T Consensus       344 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~  410 (447)
T d1pw4a_         344 TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD  410 (447)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence            5555566667777766666666778899996 59999999887767766555 45555555543333