Citrus Sinensis ID: 016125

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
MARDGYVVPAAEPQAAAAATKKKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS
cccccccccccccHHHHHHccccccccEEEEEEcccccEEEEEEEHHHHHHHHccccccccccccccccccEEcccccEEEEEcccccEEEEcccEEEcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
cccccEEEEcccccccHHHHHcccccEEEEEEEEccccEEEEEccHHHHHHHHcccHHHHHHHccccccccEEEEcccEEEEEHHHHHHEEcccEEEEEccccccHHHHHHHHHHHccccHccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
mardgyvvpaaepQAAAAATKKKTRSSRSWILLDaagnstvldvdkhAIMHRVQIHARdlrildpllsypstilGREQAIVLNLEHIKAIITSeevllrdpldehvIPVVAELQRrltpvnairdcqgdgkeyaggndvdageedespfEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRkmagtspvsgsgaanwfpasptigskisraSRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIfgmnipytwnenhgyMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS
mardgyvvpaaepqaaaaatkkktrssrSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSeevllrdplDEHVIPVVAelqrrltpvnairdcqgdgkEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAaypaldeltskissrnldrvrKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS
MARDGYVVPAAEPQaaaaatkkktrssrsWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFlaartteletaaYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRdeleqlldddddmadlylSRKMAGTSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS
****************************SWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQG********************FEFRALEVALEAICSFLAARTTELETAAYPALDEL**********************************************************************************************VEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGL***
******************************ILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPV***********************************DESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAG*************************************ENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVG*
MARDGYVVPAA****************RSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS
****GYVVPAAEPQAAAAAT*KKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTP*************************DESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMA**************************************ENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLV**
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MARDGYVVPAAEPQAAAAATKKKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRxxxxxxxxxxxxxxxxxxxxxxxxxxxxDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query394 2.2.26 [Sep-21-2011]
Q9FLG2394 Magnesium transporter MRS yes no 0.992 0.992 0.801 1e-164
Q304A0386 Magnesium transporter MRS no no 0.974 0.994 0.734 1e-163
Q10D38384 Magnesium transporter MRS yes no 0.916 0.940 0.815 1e-162
B8AJT9381 Magnesium transporter MRS N/A no 0.916 0.947 0.815 1e-162
P0CZ21380 Magnesium transporter MRS no no 0.941 0.976 0.645 1e-136
Q9LXD4387 Putative magnesium transp no no 0.931 0.948 0.628 1e-119
Q9S9N4442 Magnesium transporter MRS no no 0.939 0.837 0.493 2e-96
Q9SAH0443 Magnesium transporter MRS no no 0.941 0.837 0.486 2e-95
Q67UQ7436 Magnesium transporter MRS no no 0.885 0.800 0.496 2e-94
A2YFN7436 Magnesium transporter MRS N/A no 0.885 0.800 0.496 2e-94
>sp|Q9FLG2|MRS22_ARATH Magnesium transporter MRS2-2 OS=Arabidopsis thaliana GN=MRS2-2 PE=2 SV=1 Back     alignment and function desciption
 Score =  576 bits (1485), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 318/397 (80%), Positives = 339/397 (85%), Gaps = 6/397 (1%)

Query: 1   MARDGYVVPAAEPQAAAAATKKKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDL 60
           MA++GY+VPA     +A  T KK     SW L+DA G S  LDVDK+ IMHRVQIHARDL
Sbjct: 1   MAQNGYLVPA---DPSAVVTVKKKTPQASWALIDATGQSEPLDVDKYEIMHRVQIHARDL 57

Query: 61  RILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPV 120
           RILDP LSYPSTILGRE+AIVLNLEHIKAIITSEEVLLRDP DE+VIPVV EL+RRL   
Sbjct: 58  RILDPNLSYPSTILGRERAIVLNLEHIKAIITSEEVLLRDPSDENVIPVVEELRRRLPVG 117

Query: 121 NAIRDC-QGDGKEYAGG-NDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYP 178
           NA  +  QGDGKE AG  ND D G+EDESPFEFRALEVALEAICSFLAART ELETAAYP
Sbjct: 118 NASHNGGQGDGKEIAGAQNDGDTGDEDESPFEFRALEVALEAICSFLAARTAELETAAYP 177

Query: 179 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGT 238
           ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRK++  
Sbjct: 178 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLSSA 237

Query: 239 SPVSGS-GAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLN 297
           S    S G  NW+  SPTIGSKISRASRASLAT+ GDENDVEELEMLLEAYFMQIDSTLN
Sbjct: 238 SSPISSIGEPNWYTTSPTIGSKISRASRASLATVHGDENDVEELEMLLEAYFMQIDSTLN 297

Query: 298 KLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWN 357
           +L+TLREYIDDTEDYINIQLDNHRNQLIQLEL LSSGTV LS+YSLVAGIFGMNIPYTWN
Sbjct: 298 RLTTLREYIDDTEDYINIQLDNHRNQLIQLELVLSSGTVCLSMYSLVAGIFGMNIPYTWN 357

Query: 358 ENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS 394
           + HGYMFK+VV  T   C V FV IMSYAR+KGLVGS
Sbjct: 358 DGHGYMFKYVVGLTGTLCVVVFVIIMSYARYKGLVGS 394
Low-affinity magnesium transporter that mediates the influx of magnesium. Plays a crucial role in male gametophyte development and male fertility.
Arabidopsis thaliana (taxid: 3702)
>sp|Q304A0|MRS27_ARATH Magnesium transporter MRS2-7 OS=Arabidopsis thaliana GN=MRS2-7 PE=2 SV=1 Back     alignment and function description
>sp|Q10D38|MRS2I_ORYSJ Magnesium transporter MRS2-I OS=Oryza sativa subsp. japonica GN=MRS2-I PE=2 SV=1 Back     alignment and function description
>sp|B8AJT9|MRS2I_ORYSI Magnesium transporter MRS2-I OS=Oryza sativa subsp. indica GN=MRS2-I PE=3 SV=1 Back     alignment and function description
>sp|P0CZ21|MRS28_ARATH Magnesium transporter MRS2-8 OS=Arabidopsis thaliana GN=MRS2-8 PE=2 SV=1 Back     alignment and function description
>sp|Q9LXD4|MRS29_ARATH Putative magnesium transporter MRS2-9 OS=Arabidopsis thaliana GN=MRS2-9 PE=5 SV=2 Back     alignment and function description
>sp|Q9S9N4|MRS21_ARATH Magnesium transporter MRS2-1 OS=Arabidopsis thaliana GN=MRS2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SAH0|MRS2A_ARATH Magnesium transporter MRS2-10 OS=Arabidopsis thaliana GN=MRS2-10 PE=2 SV=1 Back     alignment and function description
>sp|Q67UQ7|MRS2B_ORYSJ Magnesium transporter MRS2-B OS=Oryza sativa subsp. japonica GN=MRS2-B PE=2 SV=1 Back     alignment and function description
>sp|A2YFN7|MRS2B_ORYSI Magnesium transporter MRS2-B OS=Oryza sativa subsp. indica GN=MRS2-B PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query394
224099887394 magnesium transporter [Populus trichocar 0.994 0.994 0.873 0.0
224111064398 magnesium transporter [Populus trichocar 0.994 0.984 0.842 0.0
225432906389 PREDICTED: magnesium transporter MRS2-I 0.984 0.997 0.855 1e-180
255551953398 RNA splicing protein mrs2, mitochondrial 0.997 0.987 0.847 1e-179
356576539395 PREDICTED: magnesium transporter MRS2-I- 0.994 0.992 0.838 1e-174
359807653390 uncharacterized protein LOC100786817 [Gl 0.987 0.997 0.832 1e-172
357443063390 Magnesium transporter [Medicago truncatu 0.987 0.997 0.822 1e-172
449465433393 PREDICTED: magnesium transporter MRS2-2- 0.994 0.997 0.830 1e-170
297797473395 hypothetical protein ARALYDRAFT_496668 [ 0.997 0.994 0.805 1e-167
357116156387 PREDICTED: magnesium transporter MRS2-I- 0.926 0.943 0.831 1e-163
>gi|224099887|ref|XP_002311660.1| magnesium transporter [Populus trichocarpa] gi|222851480|gb|EEE89027.1| magnesium transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/396 (87%), Positives = 364/396 (91%), Gaps = 4/396 (1%)

Query: 1   MARDGYVVPAAEPQAAAAATKKKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDL 60
           MARDGYVVPA +P  A AA KKKT  +RSWIL+DA G  T+LD DKHAIM+RVQIHARDL
Sbjct: 1   MARDGYVVPA-DP-LAVAAVKKKTHPARSWILVDATGQGTILDADKHAIMNRVQIHARDL 58

Query: 61  RILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPV 120
           RILDPLLSYPSTILGRE AIVLNLEHIKAIITSEEVLLRDPLDE+VIPVV ELQRRL P 
Sbjct: 59  RILDPLLSYPSTILGREGAIVLNLEHIKAIITSEEVLLRDPLDENVIPVVEELQRRLPPS 118

Query: 121 NAIRDCQGDGKEYAGGN-DVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPA 179
           +  R  QGDGKEY GG  DV+AGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPA
Sbjct: 119 SVFRQGQGDGKEYPGGQQDVEAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPA 178

Query: 180 LDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAG-T 238
           LDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRK+AG +
Sbjct: 179 LDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLAGAS 238

Query: 239 SPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNK 298
           SPVS SG ANWFPASPTIGSKISRASRAS+ATIRGDENDVEELEMLLEAYFMQIDS+LNK
Sbjct: 239 SPVSISGGANWFPASPTIGSKISRASRASVATIRGDENDVEELEMLLEAYFMQIDSSLNK 298

Query: 299 LSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNE 358
           L+TLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTV LSIYSLVAGIFGMNIPYTWN+
Sbjct: 299 LTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAGIFGMNIPYTWND 358

Query: 359 NHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS 394
           NHGYMFKWVVI T +FCA  F+ +M+YAR KGLVGS
Sbjct: 359 NHGYMFKWVVIVTGVFCASLFIVLMTYARHKGLVGS 394

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224111064|ref|XP_002315734.1| magnesium transporter [Populus trichocarpa] gi|222864774|gb|EEF01905.1| magnesium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225432906|ref|XP_002284181.1| PREDICTED: magnesium transporter MRS2-I isoform 1 [Vitis vinifera] gi|297737159|emb|CBI26360.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255551953|ref|XP_002517021.1| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis] gi|223543656|gb|EEF45184.1| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356576539|ref|XP_003556388.1| PREDICTED: magnesium transporter MRS2-I-like [Glycine max] Back     alignment and taxonomy information
>gi|359807653|ref|NP_001240913.1| uncharacterized protein LOC100786817 [Glycine max] gi|255642149|gb|ACU21339.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357443063|ref|XP_003591809.1| Magnesium transporter [Medicago truncatula] gi|355480857|gb|AES62060.1| Magnesium transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|449465433|ref|XP_004150432.1| PREDICTED: magnesium transporter MRS2-2-like [Cucumis sativus] gi|449514585|ref|XP_004164422.1| PREDICTED: magnesium transporter MRS2-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297797473|ref|XP_002866621.1| hypothetical protein ARALYDRAFT_496668 [Arabidopsis lyrata subsp. lyrata] gi|297312456|gb|EFH42880.1| hypothetical protein ARALYDRAFT_496668 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357116156|ref|XP_003559849.1| PREDICTED: magnesium transporter MRS2-I-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query394
TAIR|locus:2174799394 MGT9 "magnesium transporter 9" 0.992 0.992 0.720 3.9e-140
TAIR|locus:2200542442 MGT2 "magnesium transporter 2" 0.467 0.416 0.510 3.7e-74
TAIR|locus:2025767443 MGT1 "magnesium transporter 1" 0.467 0.415 0.510 1.6e-73
TAIR|locus:2077665436 MGT6 "magnesium transporter 6" 0.918 0.830 0.44 3.3e-70
TAIR|locus:2144746294 AT5G09720 [Arabidopsis thalian 0.637 0.853 0.592 4.9e-69
TAIR|locus:2044254421 MGT3 "magnesium transporter 3" 0.385 0.361 0.403 1.4e-60
TAIR|locus:2091176484 MGT4 "magnesium transporter 4" 0.342 0.278 0.471 9.1e-53
TAIR|locus:2139905408 MGT5 "AT4G28580" [Arabidopsis 0.878 0.848 0.356 1.7e-50
UNIPROTKB|F1P344379 MRS2 "Uncharacterized protein" 0.223 0.232 0.433 6.7e-18
RGD|708529434 Mrs2 "MRS2 magnesium homeostas 0.223 0.202 0.422 8.8e-18
TAIR|locus:2174799 MGT9 "magnesium transporter 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1371 (487.7 bits), Expect = 3.9e-140, P = 3.9e-140
 Identities = 286/397 (72%), Positives = 309/397 (77%)

Query:     1 MARDGYVVPAAEPQXXXXXXXXXXXXXXXWILLDAAGNSTVLDVDKHAIMHRVQIHARDL 60
             MA++GY+VPA +P                W L+DA G S  LDVDK+ IMHRVQIHARDL
Sbjct:     1 MAQNGYLVPA-DPSAVVTVKKKTPQAS--WALIDATGQSEPLDVDKYEIMHRVQIHARDL 57

Query:    61 RILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPV 120
             RILDP LSYPSTILGRE+AIVLNLEHIKAIITSEEVLLRDP DE+VIPVV EL+RRL   
Sbjct:    58 RILDPNLSYPSTILGRERAIVLNLEHIKAIITSEEVLLRDPSDENVIPVVEELRRRLPVG 117

Query:   121 NAIRDC-QGDGKEYAGG-NDVDAGEEDESPFEFRALEVALEAICSFXXXXXXXXXXXXYP 178
             NA  +  QGDGKE AG  ND D G+EDESPFEFRALEVALEAICSF            YP
Sbjct:   118 NASHNGGQGDGKEIAGAQNDGDTGDEDESPFEFRALEVALEAICSFLAARTAELETAAYP 177

Query:   179 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRXXXXXXXXXXXXXXXXXXSRKMAG- 237
             ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVR                  SRK++  
Sbjct:   178 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKLSSA 237

Query:   238 TSPVSGSGAANWFPASPTIGSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLN 297
             +SP+S  G  NW+  SPTIGSKISRASRASLAT+ GDENDVEELEMLLEAYFMQIDSTLN
Sbjct:   238 SSPISSIGEPNWYTTSPTIGSKISRASRASLATVHGDENDVEELEMLLEAYFMQIDSTLN 297

Query:   298 KLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWN 357
             +L+TLREYIDDTEDYINIQLDNHRNQLIQLEL LSSGTV LS+YSLVAGIFGMNIPYTWN
Sbjct:   298 RLTTLREYIDDTEDYINIQLDNHRNQLIQLELVLSSGTVCLSMYSLVAGIFGMNIPYTWN 357

Query:   358 ENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS 394
             + HGYMFK+VV  T   C V FV IMSYAR+KGLVGS
Sbjct:   358 DGHGYMFKYVVGLTGTLCVVVFVIIMSYARYKGLVGS 394
GO:0005634 "nucleus" evidence=ISM
GO:0016020 "membrane" evidence=IEA;ISS
GO:0030001 "metal ion transport" evidence=IEA;ISS
GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IDA
TAIR|locus:2200542 MGT2 "magnesium transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025767 MGT1 "magnesium transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077665 MGT6 "magnesium transporter 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144746 AT5G09720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044254 MGT3 "magnesium transporter 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091176 MGT4 "magnesium transporter 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139905 MGT5 "AT4G28580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P344 MRS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|708529 Mrs2 "MRS2 magnesium homeostasis factor homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B8AJT9MRS2I_ORYSINo assigned EC number0.81550.91620.9475N/Ano
Q9FLG2MRS22_ARATHNo assigned EC number0.80100.99230.9923yesno
Q304A0MRS27_ARATHNo assigned EC number0.73480.97460.9948nono
Q10D38MRS2I_ORYSJNo assigned EC number0.81550.91620.9401yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VIII001440
magnesium transporter (394 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
cd12823323 cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae 1e-132
cd12821285 cd12821, EcCorA_ZntB-like, Escherichia coli CorA-S 4e-08
pfam01544291 pfam01544, CorA, CorA-like Mg2+ transporter protei 2e-07
cd12827289 cd12827, EcCorA_ZntB-like_u2, uncharacterized bact 1e-05
cd12829305 cd12829, Alr1p-like, Saccharomyces cerevisiae Alr1 1e-04
COG0598322 COG0598, CorA, Mg2+ and Co2+ transporters [Inorgan 6e-04
cd12822289 cd12822, TmCorA-like, Thermotoga maritima CorA-lik 0.002
cd12832287 cd12832, TmCorA-like_u3, Uncharacterized subfamily 0.004
>gnl|CDD|213357 cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family Back     alignment and domain information 
 Score =  380 bits (978), Expect = e-132
 Identities = 168/366 (45%), Positives = 221/366 (60%), Gaps = 47/366 (12%)

Query: 30  WILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDP-LLSYPSTILGREQAIVLNLEHIK 88
           W ++D+ GN+TV+++DK  ++  + +  RDLR+LDP L SYP +IL RE AI++NLEHI+
Sbjct: 1   WTVIDSTGNATVVELDKSELLRELGLQPRDLRLLDPTLTSYPPSILVRENAILVNLEHIR 60

Query: 89  AIITSEEVLLRDPLDEH---VIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEED 145
           AIIT++EVLL DP       V   + ELQRRL   N              G++ ++G ED
Sbjct: 61  AIITADEVLLFDPDGSSSALVSAFLEELQRRLASSN--------------GSESESGGED 106

Query: 146 ESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVRKLKSAMTRL 205
             PFEFRALE ALE +CS L A    LE  A P LDELT KIS+ NL+R+  LK  +  L
Sbjct: 107 SLPFEFRALEAALEEVCSHLEAELKRLEPEALPLLDELTDKISTSNLERLLPLKRRLVEL 166

Query: 206 TARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGSKISRASR 265
             RVQKVRD LE+LLDDD+DMAD+YL+ K                            A+ 
Sbjct: 167 ETRVQKVRDALEELLDDDEDMADMYLTDK----------------------------AAG 198

Query: 266 ASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLI 325
                    E+D EE+EMLLEAY  Q+D  LNKL  LREYIDDTE+ IN+ LD+ RNQL+
Sbjct: 199 PERLESSRKEDDHEEVEMLLEAYLQQVDELLNKLEELREYIDDTEELINLILDSRRNQLM 258

Query: 326 QLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSY 385
           +LEL LS GT+SL++ +LVAG+FGMN+P    E   Y F  V   + +   + F+ ++ Y
Sbjct: 259 RLELKLSIGTLSLAVGTLVAGLFGMNLPSGL-EESPYAFWIVTGGSVVGSILIFIVVLRY 317

Query: 386 ARFKGL 391
            R K L
Sbjct: 318 LRRKRL 323

A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 323
>gnl|CDD|213355 cd12821, EcCorA_ZntB-like, Escherichia coli CorA-Salmonella typhimurium ZntB_like family Back     alignment and domain information
>gnl|CDD|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein Back     alignment and domain information
>gnl|CDD|213361 cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family Back     alignment and domain information
>gnl|CDD|213363 cd12829, Alr1p-like, Saccharomyces cerevisiae Alr1p-like subfamily Back     alignment and domain information
>gnl|CDD|223671 COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|213356 cd12822, TmCorA-like, Thermotoga maritima CorA-like family Back     alignment and domain information
>gnl|CDD|213366 cd12832, TmCorA-like_u3, Uncharacterized subfamily of the Thermotoga maritima CorA-like family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 394
KOG2662414 consensus Magnesium transporters: CorA family [Ino 100.0
COG0598322 CorA Mg2+ and Co2+ transporters [Inorganic ion tra 100.0
TIGR00383318 corA magnesium Mg(2+) and cobalt Co(2+) transport 100.0
PRK09546324 zntB zinc transporter; Reviewed 100.0
PRK11085316 magnesium/nickel/cobalt transporter CorA; Provisio 99.98
PF01544292 CorA: CorA-like Mg2+ transporter protein; InterPro 99.97
PRK11085316 magnesium/nickel/cobalt transporter CorA; Provisio 94.47
COG0598322 CorA Mg2+ and Co2+ transporters [Inorganic ion tra 93.84
PF10267395 Tmemb_cc2: Predicted transmembrane and coiled-coil 93.46
PRK09546324 zntB zinc transporter; Reviewed 93.39
PF01544292 CorA: CorA-like Mg2+ transporter protein; InterPro 90.08
PF07332121 DUF1469: Protein of unknown function (DUF1469); In 89.43
PF0265673 DUF202: Domain of unknown function (DUF202); Inter 87.41
PF03904230 DUF334: Domain of unknown function (DUF334); Inter 87.34
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-79  Score=590.98  Aligned_cols=359  Identities=65%  Similarity=0.932  Sum_probs=323.5

Q ss_pred             hccccCCCceEEEEEcCCCCeeEEEechhhhHHHhCCCcchHhhhcCCCCCCeEEeeeCCeEEeeccceeeEeecCeEEE
Q 016125           19 ATKKKTRSSRSWILLDAAGNSTVLDVDKHAIMHRVQIHARDLRILDPLLSYPSTILGREQAIVLNLEHIKAIITSEEVLL   98 (394)
Q Consensus        19 ~~~~~~~~~~~w~~~d~~g~~~~~~~~k~~l~~~~~L~~RDlr~ld~~~~~~~~I~~R~~~Ilv~le~i~~II~~d~vl~   98 (394)
                      +.++++.+.+.|++||..|+.+..+++|+.|+++.||+|||||.+||.+++|++|+.|++|||+|+||||||||+++|++
T Consensus        56 ~~~~~~~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeVll  135 (414)
T KOG2662|consen   56 VSKKSGSGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEVLL  135 (414)
T ss_pred             cccccCCcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeehhheeE
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCchhHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125           99 RDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYP  178 (394)
Q Consensus        99 f~~~~~~~~~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~~~~~le~~~~~  178 (394)
                      |++..+ +.++.+++++|+...+.....+.+         +.....+.+||||||||++|+.+|+.|++++.++|..+++
T Consensus       136 ~d~~~~-v~~~~~el~~~l~~~~~~~~~q~s---------~~~~~~~~lPFEFrALE~aLe~~~s~L~~~~~~Le~~~~~  205 (414)
T KOG2662|consen  136 LDSLDP-VIPYNEELQRRLPVELESRGNQLS---------SDGGSKDELPFEFRALEVALEAACSFLDSRLSELETEAYP  205 (414)
T ss_pred             eccccc-cchHHHHHHHHhcccccccccccC---------CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999877 789999999999877643221111         1122268899999999999999999999999999999999


Q ss_pred             HHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhhhcCCCCCCCCCCCCCCCCCCCccc
Q 016125          179 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGS  258 (394)
Q Consensus       179 ~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (394)
                      +||+|+.++++.+|++|+.+|++|+.|.++++.+||+|++||+||+||++||||+|+.+.+      .+.|.|..|...+
T Consensus       206 ~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~------~~~~~~~sp~~~~  279 (414)
T KOG2662|consen  206 LLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQAS------SPESAPTSPTIKA  279 (414)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhcc------ccccCCCCccccC
Confidence            9999999999999999999999999999999999999999999999999999999975521      1567777777766


Q ss_pred             ccccccccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 016125          259 KISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVSL  338 (394)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~elE~LLE~y~~~vd~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~lmkl~l~LTi~s~i~  338 (394)
                      ..++++..+.......+++++|+|||||+||+|+|++.++++.+++||++|||++|++||++||++|+++++||++|+++
T Consensus       280 ~~~r~~~~~~~s~~~~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT~~~  359 (414)
T KOG2662|consen  280 GISRAKSNRASSTVRGEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGTFCL  359 (414)
T ss_pred             CccchhhcccchhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            65554322221122237999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 016125          339 SIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKGLVGS  394 (394)
Q Consensus       339 ~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~wl~~  394 (394)
                      +.+++|||+||||+++.+|+ .+|+|+|+++++.++|+++|+..++|+|+||++++
T Consensus       360 s~~~~va~ifGMNl~~~l~~-~~~~F~~vv~~~~~~~~~lf~~i~~~~k~krL~~~  414 (414)
T KOG2662|consen  360 SVFSVVAGIFGMNLPSSLEE-DHYAFKWVVGITFTLCIVLFVVILGYAKLKRLLGL  414 (414)
T ss_pred             HHHHHHHHHhcCCccchhcc-CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            99999999999999999999 78999999999999999999999999999998864

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA) Back     alignment and domain information
>PRK09546 zntB zinc transporter; Reviewed Back     alignment and domain information
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional Back     alignment and domain information
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ] Back     alignment and domain information
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional Back     alignment and domain information
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans Back     alignment and domain information
>PRK09546 zntB zinc transporter; Reviewed Back     alignment and domain information
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ] Back     alignment and domain information
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like Back     alignment and domain information
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function Back     alignment and domain information
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
3rkg_A261 Magnesium transporter MRS2, mitochondrial; matrix 2e-75
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae} Length = 261 Back     alignment and structure
 Score =  234 bits (597), Expect = 2e-75
 Identities = 66/308 (21%), Positives = 124/308 (40%), Gaps = 58/308 (18%)

Query: 20  TKKKTRSSRSWILLDAAGNSTVL--DVDKHAIMHRVQIHARDLRILD-PLLSYPSTILGR 76
                    S  + ++ GN   +     K + +    +  RDLR +D   +    TI+ +
Sbjct: 9   ISASDSLFISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCK 68

Query: 77  EQAIVLNLEHIKAIITSEEVLLRDPLDEHVIPVVAELQRRLTPVNAIRDCQGDGKEYAGG 136
              IV+NL HIKA+I  ++V + D  +      ++ L   L                   
Sbjct: 69  PNCIVINLLHIKALIERDKVYVFDTTNPSAAAKLSVLMYDLE------------------ 110

Query: 137 NDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYPALDELTSKISSRNLDRVR 196
           + + + + +   +E RALE     + S L              L++L ++++   L  + 
Sbjct: 111 SKLSSTKNNSQFYEHRALESIFINVMSALETDFKLHSQICIQILNDLENEVNRLKLRHLL 170

Query: 197 KLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTI 256
                +T    +   +RD L++LL++DDD+A++YL+ K +                    
Sbjct: 171 IKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKSP------------------- 211

Query: 257 GSKISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQ 316
                             +++  +LEML+E Y+ Q D  + +  +L + I  TE+ +NI 
Sbjct: 212 ------------------KDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNII 253

Query: 317 LDNHRNQL 324
           LD +RN L
Sbjct: 254 LDANRNSL 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query394
3rkg_A261 Magnesium transporter MRS2, mitochondrial; matrix 100.0
2iub_A363 CORA, divalent cation transport-related protein; m 100.0
4ev6_A339 Magnesium transport protein CORA; membrane protein 100.0
4egw_A280 Magnesium transport protein CORA; magnesium transp 99.73
3nvo_A264 Zinc transport protein ZNTB; alpha-beta-alpha sand 99.62
3ck6_A252 Putative membrane transport protein; APC91421.1, Z 99.5
2bbh_A269 Divalent cation transport-related protein; transpo 99.38
2hn1_A266 CORA, magnesium and cobalt transporter; integral m 99.37
2iub_A363 CORA, divalent cation transport-related protein; m 95.75
4ev6_A339 Magnesium transport protein CORA; membrane protein 92.9
4egw_A280 Magnesium transport protein CORA; magnesium transp 90.2
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=6.5e-53  Score=395.61  Aligned_cols=240  Identities=28%  Similarity=0.435  Sum_probs=221.1

Q ss_pred             CceEEEEEcCCCCeeEEE--echhhhHHHhCCCcchHhhhcCCC-CCCeEEeeeCCeEEeeccceeeEeecCeEEEeCCC
Q 016125           26 SSRSWILLDAAGNSTVLD--VDKHAIMHRVQIHARDLRILDPLL-SYPSTILGREQAIVLNLEHIKAIITSEEVLLRDPL  102 (394)
Q Consensus        26 ~~~~w~~~d~~g~~~~~~--~~k~~l~~~~~L~~RDlr~ld~~~-~~~~~I~~R~~~Ilv~le~i~~II~~d~vl~f~~~  102 (394)
                      ...+|++||..|++..++  ++|+++++++||+|||||+|||.+ +++|+|++|++||+||++||||||++|+|++|++.
T Consensus        15 ~~~~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~   94 (261)
T 3rkg_A           15 LFISCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTT   94 (261)
T ss_dssp             GEEEEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCS
T ss_pred             ceEEEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCC
Confidence            378999999999999986  999999999999999999999984 67889999999999999999999999999999998


Q ss_pred             CCCch----hHHHHHHHHhCcCCCccccCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016125          103 DEHVI----PVVAELQRRLTPVNAIRDCQGDGKEYAGGNDVDAGEEDESPFEFRALEVALEAICSFLAARTTELETAAYP  178 (394)
Q Consensus       103 ~~~~~----~~~~~l~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpfel~~LE~iL~~~~~~Le~~~~~le~~~~~  178 (394)
                      ++.+.    .|+.+++.|+..++                      .+.+||||+|||+||.++|..|++++..++..+.+
T Consensus        95 ~~~~~~~~~~f~~~l~~~l~~~~----------------------~~~lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~  152 (261)
T 3rkg_A           95 NPSAAAKLSVLMYDLESKLSSTK----------------------NNSQFYEHRALESIFINVMSALETDFKLHSQICIQ  152 (261)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCSS----------------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhhHHHHHHHHHHHhccCC----------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76543    48889999986542                      24699999999999999999999999999999999


Q ss_pred             HHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHhhhhcCCCCCCCCCCCCCCCCCCCccc
Q 016125          179 ALDELTSKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMAGTSPVSGSGAANWFPASPTIGS  258 (394)
Q Consensus       179 ~ld~L~~~~~~~~L~~L~~lk~~L~~l~~~v~~~re~l~~ll~~d~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (394)
                      ++++|++++++..|++|+..+++|+.+..+++.+|++|+++|++|+||+.||||++..                      
T Consensus       153 ~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~----------------------  210 (261)
T 3rkg_A          153 ILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS----------------------  210 (261)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC----------------------
T ss_pred             HHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC----------------------
Confidence            9999999999999999999999999999999999999999999999999999998742                      


Q ss_pred             ccccccccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 016125          259 KISRASRASLATIRGDENDVEELEMLLEAYFMQIDSTLNKLSTLREYIDDTEDYINIQLDNHRNQL  324 (394)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~elE~LLE~y~~~vd~~~~~l~~l~e~i~~te~~i~~~Ld~~rN~l  324 (394)
                                     ..++++|+|||||+|++|+|+++++++.+.++|++|||++++.||++||++
T Consensus       211 ---------------~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i~LD~~RN~L  261 (261)
T 3rkg_A          211 ---------------PKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRNSL  261 (261)
T ss_dssp             ---------------TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             ---------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence                           357899999999999999999999999999999999999999999999974
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A Back     alignment and structure
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii} Back     alignment and structure
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii} Back     alignment and structure
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A Back     alignment and structure
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A* Back     alignment and structure
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1 Back     alignment and structure
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus} Back     alignment and structure
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A Back     alignment and structure
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii} Back     alignment and structure
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 394
d2iuba264 f.17.3.1 (A:286-349) Magnesium transport protein C 3e-05
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} Length = 64 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 330 FLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVF 381
            L+         + +AGI+GMN  Y       + +  V+    +   +  V+
Sbjct: 8   VLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVY 59

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query394
d2iuba264 Magnesium transport protein CorA {Thermotoga marit 99.75
d2bbha1232 Magnesium transport protein CorA, soluble domain { 99.55
d1lrza165 Methicillin resistance protein FemA probable tRNA- 82.13
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=1.8e-19  Score=132.03  Aligned_cols=64  Identities=22%  Similarity=0.357  Sum_probs=43.4

Q ss_pred             HhHHHHHHhHHHHHHHHHHHHHHHHHhhcccCCCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 016125          320 HRNQLIQLELFLSSGTVSLSIYSLVAGIFGMNIPYTWNENHGYMFKWVVIFTAIFCAVTFVFIMSYARFKG  390 (394)
Q Consensus       320 ~rN~lmkl~l~LTi~s~i~~~~T~IaGifGMN~~~~pE~~~~~gF~~v~~~~~~~~~~l~~~~~~~frrk~  390 (394)
                      ++|++||   +||++|++|+|+|+|||+||||++++|+.++++||+++++++    +++++++++||||||
T Consensus         1 r~N~~mk---~lT~it~iflP~t~i~gifGMN~~~~P~~~~~~~~~~~~~~~----~~~~~~~~~~f~rkk   64 (64)
T d2iuba2           1 KTNEVMK---VLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVM----GVIAVIMVVYFKKKK   64 (64)
T ss_dssp             HHHHHHH---HHHHHHHHHHHHHHHTTSCC--------------CHHHHHHH----HHHHHHHHTTTTSCC
T ss_pred             ChhHHHH---HHHHHHHHHHHHHHHHhhhccCCCCCCCCCccHHHHHHHHHH----HHHHHHHHHHHhccC
Confidence            5799999   799999999999999999999999999998999999888754    445567889999987
>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure