Citrus Sinensis ID: 016131

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
Protein Sequence
MGAGDNDDMGFQPRNESAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQFPPLPQVL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcHHHHHHccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccHHHccccccccccccccccccccccccccHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgagdnddmgfqprnesamncssgmmpqklpgmqmnsvpmyksvsgpdhfygsgwepivslnqgesfgvssmvshnefapsypvalenqgmsstsnldqyssdpsfvelvpkipgfgsgnfSEMVssfglpenaqiassgcppnyvpnkegcyernsrnvsqsyeDHQICEEAAIgvatngktrkrapesnsllntdknvevelqkdpsgdssgilkeqdEKKQKIEQNtganmrgkqaakptkdsslsgeapkEYIHMRAkrgqatnshsLAERVRREKISERMRLLQELVpgcnkitgkaVMLDEIINYVQSLQQQVEFLSMKLatvnpelnLDIERILSKDILharsgsaatigfssgmnssrpyppgifqgtmpsipganpqfpplpqvl
Flexible Loop (DISEMBL)
mgagdnddmgfqprneSAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAaigvatngktrkrapesnsllntdknvevelqkdpsgdssgilkeqdekkqkieqntganmrgkqaakptkdsslsgeAPKEYIHMRakrgqatnshslaeRVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQfpplpqvl
Low Complexity Region (SEG)
MGAGDNDDMGFQPRNESAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILkeqdekkqkieqNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQFPPLPQVL
Disordered region (IsUnstruct)
************************************************HFYGSGWEPIVSLNQ*********************************************LVPKIPGF****************************************************IC****I*************************************************************************************************************MRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHAR*********************************************
Disordered Region (DISOPRED)
*************************************************************************************************************************************************************************************************************************************************************************************REKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLAT******************************************************************
Disordered Region (DISEMBL)
********MGFQPRNESAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTG*******************EAPKEYIHMR**************RVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQFPPLPQVL
Disordered Region (DISPRO)
******************************************SVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNY***********************************************************************************************************PKEYIHMRAKRGQ***SHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILH*****AAT*********SRPYPPG*F*GTMPS***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGAGDNDDMGFQPRNESAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQFPPLPQVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	394	2.2.26 [Sep-21-2011]
Q6NKN9	366	Transcription factor bHLH	yes	no	0.753	0.811	0.460	1e-62
Q9CAA9	486	Transcription factor bHLH	no	no	0.675	0.547	0.414	3e-49
Q9C670	390	Transcription factor bHLH	no	no	0.624	0.630	0.422	3e-44
Q9SRT2	456	Transcription factor bHLH	no	no	0.352	0.304	0.556	1e-40
Q9LK48	371	Transcription factor bHLH	no	no	0.390	0.415	0.539	6e-39
Q9FJL4	498	Transcription factor bHLH	no	no	0.243	0.192	0.731	9e-38
Q8GY61	335	Transcription factor bHLH	no	no	0.426	0.501	0.457	5e-37
Q9ZPW3	337	Transcription factor bHLH	no	no	0.535	0.626	0.433	2e-36
Q93W88	286	Transcription factor bHLH	no	no	0.388	0.534	0.503	1e-35
Q93VJ4	304	Transcription factor BEE	no	no	0.388	0.503	0.522	2e-35

>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 169/367 (46%), Positives = 222/367 (60%), Gaps = 70/367 (19%)

Query: 35  MNSVPMYKSVSGPDHFYGSG-WEPIVSLNQGESFGVSSMVSHNEFAPSYPVALENQGMSS 93
           + S+P+Y      D F+ S  W+P+V+         ++  S + + PS  +A++N GMS 
Sbjct: 28  ITSMPLYAKA---DPFFSSADWDPVVN-------AAAAGFSSSHYHPS--MAMDNPGMSC 75

Query: 94  TSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSS---FGLPENAQIASSGCPPNYV-PNK 149
            S+                 PG  SG  ++M +S   FG     QI       +++  +K
Sbjct: 76  FSHYQ---------------PGSVSGFAADMPASLLPFGDCGGGQIG------HFLGSDK 114

Query: 150 EGCYERNSRNVSQSYEDH-QICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDP 208
           +G  ER  R    S+EDH Q+ ++A +G +  GK  +R PE+ S  N  K VE E Q+DP
Sbjct: 115 KG--ERLIRAGESSHEDHHQVSDDAVLGASPVGK--RRLPEAESQWNK-KAVE-EFQEDP 168

Query: 209 SGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQAT 267
              +     +Q +KK K +Q+       K+     K+SS S EAPKE YIHMRA+RGQAT
Sbjct: 169 QRGN-----DQSQKKHKNDQS-------KETV--NKESSQSEEAPKENYIHMRARRGQAT 214

Query: 268 NSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLA 327
           NSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLA
Sbjct: 215 NSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLA 274

Query: 328 TVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPG-ANPQ 386
           TVNPE+N+DI+RIL+KD+L +R  +  T+G +         P   FQG +P++    NPQ
Sbjct: 275 TVNPEINIDIDRILAKDLLQSRDRNTPTLGLN---------PFAGFQGNIPNLSATTNPQ 325

Query: 387 FPPLPQV 393
           + PLPQ 
Sbjct: 326 YNPLPQT 332

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1

 Score =  196 bits (498), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 133/321 (41%), Positives = 180/321 (56%), Gaps = 55/321 (17%)

Query: 97  LDQYSSDPSFVELVPKIPGFGSGNFSEMVS-------SFGL------PENAQIASS---- 139
           + Q+ +D  F+E   +   F  GNFS+MV+       + GL          Q  S+    
Sbjct: 123 MAQFPADSGFIERAARFSLFSGGNFSDMVNQPLGNSEAIGLFLQGGGTMQGQCQSNELNV 182

Query: 140 GCPPNYV----------------PNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKT 183
           G P N V                PN  G     S NVS+  +      +     ++N K 
Sbjct: 183 GEPHNDVSVAVKESTVRSSEQAKPNVPG-----SGNVSEDTQSSGGNGQKGRETSSNTKK 237

Query: 184 RKRAPESNS-LLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKI--EQNTGANMRGKQAA 240
           RKR  + NS    + ++ + E + D +GD     K  DE+      +++     +GKQ++
Sbjct: 238 RKRNGQKNSEAAQSHRSQQSEEEPDNNGDE----KRNDEQSPNSPGKKSNSGKQQGKQSS 293

Query: 241 KPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITG 300
            P KD          YIH+RA+RGQATNSHSLAERVRREKISERM+ LQ+LVPGCNK+TG
Sbjct: 294 DPPKDG---------YIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTG 344

Query: 301 KAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSS 360
           KAVMLDEIINYVQSLQ+QVEFLSMKLATVNP+++ ++E +L+KD L  R+GS++T  F  
Sbjct: 345 KAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLAKDALQLRAGSSSTTPFPP 404

Query: 361 GMNSSR-PYPPGIFQGTMPSI 380
            M+ +  P P G  Q T+ SI
Sbjct: 405 NMSMAYPPLPHGFMQQTLSSI 425

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1

 Score =  179 bits (455), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/284 (42%), Positives = 156/284 (54%), Gaps = 38/284 (13%)

Query: 96  NLDQYSSDPSFVELVPKIPGFGSGNF--SEMVSSFGLPE-------NAQIASSGCPPNYV 146
           N+ Q+ +D  F+E   K   FG G    ++  SS G+P+       + QI S G   +  
Sbjct: 73  NMAQFPADSGFIERAAKFSFFGCGEMMMNQQQSSLGVPDSTGLFLQDTQIPS-GSKLDNG 131

Query: 147 PNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQK 206
           P  +       R+++   ED Q         A  G+T  +   S       K+ E     
Sbjct: 132 PLTDASKLVKERSINNVSEDSQSSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCE----- 186

Query: 207 DPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQA 266
                      E+++KKQK EQ+  +N     + K   DS   G     YIHMRA+RGQA
Sbjct: 187 -----------EEEDKKQKDEQSPTSNANKTNSEKQPSDSLKDG-----YIHMRARRGQA 230

Query: 267 TNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKL 326
           TNSHSLAERVRREKISERM+ LQ+LVPGC+K+TGKAVMLDEIINYVQSLQ Q+EFLSMKL
Sbjct: 231 TNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKL 290

Query: 327 ATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPP 370
           + VNP L+ ++E +L+KD L +   SA T       N S  YPP
Sbjct: 291 SAVNPVLDFNLESLLAKDALQS---SAPTFPH----NMSMLYPP 327

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/151 (55%), Positives = 113/151 (74%), Gaps = 12/151 (7%)

Query: 208 PSGDSSGILKEQDEKKQK------------IEQNTGANMRGKQAAKPTKDSSLSGEAPKE 255
           P+G+SSG L  + + K K            IE+   ++ +  + ++   D + S +  K+
Sbjct: 195 PAGESSGELSRKRKTKSKQNSPSAVSSSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKD 254

Query: 256 YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSL 315
           YIH+RA+RGQAT+SHSLAERVRREKISERM+LLQ+LVPGCNK+TGKA+MLDEIINYVQSL
Sbjct: 255 YIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSL 314

Query: 316 QQQVEFLSMKLATVNPELNLDIERILSKDIL 346
           Q+QVEFLSMKL++VN  L+ +++ +LSKDI 
Sbjct: 315 QRQVEFLSMKLSSVNTRLDFNMDALLSKDIF 345

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1

 Score =  162 bits (409), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 88/163 (53%), Positives = 112/163 (68%), Gaps = 9/163 (5%)

Query: 185 KRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTK 244
           K +P S+SL  ++  V        SG++ G  K     KQ +  ++   +    +    K
Sbjct: 126 KESPASSSLTASNSKV--------SGENGGS-KGGKRSKQDVAGSSKNGVEKCDSKGDNK 176

Query: 245 DSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVM 304
           D +   EAPK+YIH+RA+RGQAT+SHSLAER RREKISERM LLQ+LVPGCN+ITGKAVM
Sbjct: 177 DDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVM 236

Query: 305 LDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILH 347
           LDEIINYVQSLQ+QVEFLSMKLATVNP +  +    LS +++ 
Sbjct: 237 LDEIINYVQSLQRQVEFLSMKLATVNPRMEFNANASLSTEMIQ 279

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1

 Score =  157 bits (398), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 90/97 (92%), Gaps = 1/97 (1%)

Query: 251 EAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIIN 310
           E PK+YIH+RA+RGQAT+SHSLAERVRREKI ERM+LLQ+LVPGCNK+TGKA+MLDEIIN
Sbjct: 293 EPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIIN 352

Query: 311 YVQSLQQQVEFLSMKLATVN-PELNLDIERILSKDIL 346
           YVQSLQ+QVEFLSMKL++VN   L+ +++ ++SKD++
Sbjct: 353 YVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSKDVM 389

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score =  155 bits (392), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 128/188 (68%), Gaps = 20/188 (10%)

Query: 169 ICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKI-E 227
           I  E  +G    G  +KR  ++ +    +K  ++ + +D       +++E +E+K KI E
Sbjct: 80  ISPETTLGT---GNFKKRKFDTETKDCNEKKKKMTMNRDD------LVEEGEEEKSKITE 130

Query: 228 QNTGA--NMRGKQAAKPTKDSSLSGEAPK--------EYIHMRAKRGQATNSHSLAERVR 277
           QN G+  +++  +     ++++ S ++ K        +YIH+RA+RGQAT+SHS+AERVR
Sbjct: 131 QNNGSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVR 190

Query: 278 REKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDI 337
           REKISERM+ LQ+LVPGC+KITGKA MLDEIINYVQSLQ+Q+EFLSMKLA VNP  + D+
Sbjct: 191 REKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPRPDFDM 250

Query: 338 ERILSKDI 345
           + I +K++
Sbjct: 251 DDIFAKEV 258

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPW3|BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3

 Score =  153 bits (387), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/242 (43%), Positives = 139/242 (57%), Gaps = 31/242 (12%)

Query: 108 ELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDH 167
           EL+  +   GS N   + SSF      Q+  SG  PNY       +E  SR  S   E  
Sbjct: 47  ELLQILQFHGSNNDELLESSFS---QFQMLGSGFGPNYNMGFGPPHESISRTSSCHMEPV 103

Query: 168 QICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIE 227
              E   + + T  +TR  A      L   +  EV+ +++          ++ EKK K+E
Sbjct: 104 DTME---VLLKTGEETRAVA------LKNKRKPEVKTREE----------QKTEKKIKVE 144

Query: 228 QNTGANMRGKQAAKPTKDSS-LSGEAPK--------EYIHMRAKRGQATNSHSLAERVRR 278
             T ++M+GK     T+ SS  S E  K        +YIH+RA+RGQAT+ HSLAER RR
Sbjct: 145 AETESSMKGKSNMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARR 204

Query: 279 EKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIE 338
           EKIS++M+ LQ++VPGCNK+TGKA MLDEIINYVQ LQ+QVEFLSMKLA +NPEL L +E
Sbjct: 205 EKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELELAVE 264

Query: 339 RI 340
            +
Sbjct: 265 DV 266

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/157 (50%), Positives = 107/157 (68%), Gaps = 4/157 (2%)

Query: 222 KKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKI 281
           +K +   N+   + G+++ K  + S    E P +YIH+RA+RGQAT+SHSLAERVRREKI
Sbjct: 101 RKARNSNNSKEGVEGRKSKKQKRGSK--EEPPTDYIHVRARRGQATDSHSLAERVRREKI 158

Query: 282 SERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERIL 341
           SERMR LQ LVPGC+K+TGKA+MLDEIINYVQ+LQ QVEFLSMKL +++P +  D    L
Sbjct: 159 SERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSISPVV-YDFGSDL 217

Query: 342 SKDILHARSGSAAT-IGFSSGMNSSRPYPPGIFQGTM 377
              IL +  GS      F++ M ++ P  P +   ++
Sbjct: 218 DGLILQSEMGSPEVGTSFTNAMPTTTPIFPSLLDNSV 254

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VJ4|BEE2_ARATH Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 108/157 (68%), Gaps = 4/157 (2%)

Query: 214 GILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPK-EYIHMRAKRGQATNSHSL 272
           G  +++++KK K E  T  +M+GK     T+ SS   E  K +YIH+RA+RG+AT+ HSL
Sbjct: 98  GKTEKREKKKIKAEDETEPSMKGKSNMSNTETSS---EIQKPDYIHVRARRGEATDRHSL 154

Query: 273 AERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPE 332
           AER RREKIS++M+ LQ++VPGCNK+TGKA MLDEIINYVQSLQQQVEFLSMKL+ +NPE
Sbjct: 155 AERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSMKLSVINPE 214

Query: 333 LNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYP 369
           L   I+ + +K      +G        S M   R +P
Sbjct: 215 LECHIDDLSAKQFQAYFTGPPEGDSKQSIMADFRSFP 251

Positive regulator of brassinosteroid signaling.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
225458914	430	PREDICTED: transcription factor bHLH74 [	0.974	0.893	0.644	1e-130
255537964	408	DNA binding protein, putative [Ricinus c	0.934	0.901	0.622	1e-127
224081861	407	predicted protein [Populus trichocarpa]	0.923	0.894	0.613	1e-119
147818198	484	hypothetical protein VITISV_034133 [Viti	0.918	0.747	0.591	1e-113
224067162	330	predicted protein [Populus trichocarpa]	0.751	0.896	0.674	1e-106
125664136	400	basic helix-loop-helix protein [Sesamum	0.906	0.892	0.547	1e-101
356552284	429	PREDICTED: transcription factor bHLH74-l	0.969	0.890	0.552	1e-100
356577684	435	PREDICTED: transcription factor bHLH74-l	0.977	0.885	0.544	3e-98
449509268	402	PREDICTED: transcription factor bHLH74-l	0.911	0.893	0.530	1e-95
359494803	415	PREDICTED: transcription factor bHLH74-l	0.928	0.881	0.472	4e-82

>gi|225458914|ref|XP_002285475.1| PREDICTED: transcription factor bHLH74 [Vitis vinifera] gi|302142156|emb|CBI19359.3| unnamed protein product [Vitis vinifera]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 254/394 (64%), Positives = 303/394 (76%), Gaps = 10/394 (2%)

Query: 1   MGAGDNDDMGFQPRNESAMNC-SSGM----MPQKLPGMQMNSVPMYKSVSGPDHFYGSGW 55
           MG  DN +MGF   ++S +NC SSGM    + +K+ GM M+S  MYKS +G D F+GSGW
Sbjct: 1   MGIDDNGNMGFPNTSQSILNCPSSGMNTHPISEKVTGMTMSSASMYKSSNGGDPFFGSGW 60

Query: 56  EPIVSLNQGESFGVSSMVSHNEFAPS-YPVALENQGMSSTSNLDQYSSDPSFVELVPKIP 114
           +PIVSL+Q E+FG SSMVSH+EFA S YPV LENQG+ ST +L  Y S+ S VE+VPK+P
Sbjct: 61  DPIVSLSQNENFGGSSMVSHSEFANSAYPVVLENQGIGSTPHLVLYPSNSSLVEMVPKLP 120

Query: 115 GFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAA 174
            FGSG+FSEMV+SFGLPE  Q A+SGCPPN+ PNKEG  E+ S N +QS E HQI E  A
Sbjct: 121 CFGSGSFSEMVASFGLPECGQTANSGCPPNFPPNKEGLTEK-SLNGAQSQEGHQISEGDA 179

Query: 175 IGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANM 234
           +  + +GK RK + +    LNT K+ + E  K    ++S   KEQ+EKK KI+QN   N+
Sbjct: 180 VDASPSGKRRKSSFDPRPPLNTSKSADGEQPKGLPWENSEFSKEQEEKKLKIDQNMSPNL 239

Query: 235 RGKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVP 293
           RGKQ  K  KD+S +GEAPKE YIH+RA+RGQATNSHSLAERVRREKISERMRLLQELVP
Sbjct: 240 RGKQPNKHAKDNSSNGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVP 299

Query: 294 GCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSA 353
           GCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELN+DIER+LSKDIL++R GS 
Sbjct: 300 GCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNIDIERLLSKDILNSRGGST 359

Query: 354 ATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQF 387
           + +GF  GM+SS PYP GI QGT+P IP   PQF
Sbjct: 360 SVLGFGPGMSSSHPYPHGISQGTLPGIP--TPQF 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537964|ref|XP_002510047.1| DNA binding protein, putative [Ricinus communis] gi|223550748|gb|EEF52234.1| DNA binding protein, putative [Ricinus communis]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/392 (62%), Positives = 289/392 (73%), Gaps = 24/392 (6%)

Query: 5   DNDDMGFQPRNESAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSLNQG 64
           +N+ M FQ   ES MNC S        GM  N             F+   W+P+VSLNQ 
Sbjct: 7   NNEGMAFQSGGESVMNCQSS-------GMSANP------------FFPPAWDPVVSLNQH 47

Query: 65  ESFGVSSMVSHNEFAPS-YPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSE 123
           E+FG +SMVS +EF  S Y + +ENQG++S+S+L  Y SD S+VELVPK P +GSG+FSE
Sbjct: 48  ENFG-ASMVSQSEFTNSHYAIVMENQGINSSSHLVHYQSDSSYVELVPKFPSYGSGSFSE 106

Query: 124 MVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKT 183
           MVSSFGL +  QI++SGC PNY  N     ER   N + S EDHQ+ EE  +GV+ +GK 
Sbjct: 107 MVSSFGLTDCGQISNSGCHPNYTSNSAANNERTITNSALSQEDHQLSEEPVVGVSPDGKR 166

Query: 184 RKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPT 243
           RKR  E +S  + +KN E E+ KDPSG+SS I KEQDEKK + EQNT AN+RGKQAAK  
Sbjct: 167 RKRLAEPSSPFDPNKNAE-EMHKDPSGNSSDIPKEQDEKKSRTEQNTAANLRGKQAAKQA 225

Query: 244 KDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKA 302
           K++S SGEAPKE YIH+RA+RGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKA
Sbjct: 226 KENSHSGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKA 285

Query: 303 VMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSSGM 362
           VMLDEIINYVQSLQQQVEFLSMKLATVNPELN+DIERILSKDILH+R G+AA +G S G+
Sbjct: 286 VMLDEIINYVQSLQQQVEFLSMKLATVNPELNIDIERILSKDILHSRGGNAAIMGLSPGI 345

Query: 363 NSSRPYPPGIFQGTMPSIPGANPQFPPLPQVL 394
           N + PY  GIF   +P IP  NPQFPP+P  +
Sbjct: 346 N-AHPYSHGIFPPNIPVIPNTNPQFPPMPHTV 376

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081861|ref|XP_002306505.1| predicted protein [Populus trichocarpa] gi|222855954|gb|EEE93501.1| predicted protein [Populus trichocarpa]

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/391 (61%), Positives = 281/391 (71%), Gaps = 27/391 (6%)

Query: 2   GAGDND-DMGFQPRNESAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVS 60
           G+GDN+ D+G+Q R ES M C         P   MN+ P          FY S W+P+VS
Sbjct: 3   GSGDNNGDLGYQNRVESVMKC---------PSSGMNTNP----------FYVSAWDPVVS 43

Query: 61  LNQGESFGVSSMVSHNEFAPS-YPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSG 119
           L+Q  +FG SS  S +EF+ S +P+ +EN G+S+T +L  Y SD  FVELVPK PGFGSG
Sbjct: 44  LSQLGNFGGSSTGSQSEFSNSPFPIVMENPGISNTCHLVHYPSDSGFVELVPKFPGFGSG 103

Query: 120 NFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVAT 179
           NFSEMV S GL E  QI ++GCPPNY   KE   E  +   +Q  ED Q+ EE  IG   
Sbjct: 104 NFSEMVGSVGLTECGQIVNAGCPPNY---KEANNESTAHG-AQREEDQQLSEETTIGALP 159

Query: 180 NGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQA 239
           NGK R+   ESNS  + +KN E E QKDPSG+SS I KE DEKKQKIEQN  AN+RGKQ 
Sbjct: 160 NGKRRRLVAESNSPFDPNKNAEGEFQKDPSGESSDIAKELDEKKQKIEQNCSANLRGKQV 219

Query: 240 AKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKI 298
           AK  KD+  SGEAPK+ YIH+RA+RGQATNSHSLAERVRREKISERMR+LQELVPGCNKI
Sbjct: 220 AKQAKDNPQSGEAPKDDYIHVRARRGQATNSHSLAERVRREKISERMRMLQELVPGCNKI 279

Query: 299 TGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGF 358
           TGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEL  D+E+I SKDILH+R G+AA +GF
Sbjct: 280 TGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELYNDVEKIQSKDILHSRGGNAAILGF 339

Query: 359 SSGMNSSRPYPPGIFQGTMPSIPGANPQFPP 389
           S G+NS + Y  GIFQ  +P I  +NPQF P
Sbjct: 340 SPGINSHQ-YSHGIFQPGIPVILNSNPQFSP 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818198|emb|CAN60403.1| hypothetical protein VITISV_034133 [Vitis vinifera]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/394 (59%), Positives = 282/394 (71%), Gaps = 32/394 (8%)

Query: 1   MGAGDNDDMGFQPRNESAMNC-SSGM----MPQKLPGMQMNSVPMYKSVSGPDHFYGSGW 55
           MG  DN +MGF   ++S +NC SSGM    + +K+ GM M+S  MYKS +G D F+GSGW
Sbjct: 1   MGIDDNGNMGFPNTSQSILNCPSSGMNTHPISEKVTGMTMSSASMYKSSNGGDPFFGSGW 60

Query: 56  EPIVSLNQGESFGVSSMVSHNEFAPS-YPVALENQGMSSTSNLDQYSSDPSFVELVPKIP 114
           +PIVSL+Q E+FG SSMVSH+EFA S YPV LENQG+ ST +L  Y S+ S VE+VPK+P
Sbjct: 61  DPIVSLSQNENFGGSSMVSHSEFANSAYPVVLENQGIGSTPHLVLYPSNSSLVEMVPKLP 120

Query: 115 GFGSGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAA 174
            FGSG+FSEMV+SFGLPE  Q A+SGCPPN+ PNKEG  E+ S N +QS E HQI E  A
Sbjct: 121 CFGSGSFSEMVASFGLPECGQTANSGCPPNFPPNKEGLTEK-SLNGAQSQEGHQISEGDA 179

Query: 175 IGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANM 234
           +  + +GK RK + +    LNT K+ + E  K    ++S   KEQ+EKKQKI+QN   N+
Sbjct: 180 VDASPSGKRRKSSFDPRPPLNTSKSADGEQPKGLPWENSEFSKEQEEKKQKIDQNMSPNL 239

Query: 235 RGKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVP 293
           RGKQ  K  KD+S +GEAPKE YIH+RA+RGQATNSHSLAER                  
Sbjct: 240 RGKQPNKHAKDNSSNGEAPKENYIHVRARRGQATNSHSLAER------------------ 281

Query: 294 GCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSA 353
               ITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELN+DIER+LSKDIL++R GS 
Sbjct: 282 ----ITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNIDIERLLSKDILNSRGGST 337

Query: 354 ATIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQF 387
           + +GF  GM+SS PYP GI QGT+P IP   PQF
Sbjct: 338 SVLGFGPGMSSSHPYPHGISQGTLPGIP--TPQF 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067162|ref|XP_002302386.1| predicted protein [Populus trichocarpa] gi|222844112|gb|EEE81659.1| predicted protein [Populus trichocarpa]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/310 (67%), Positives = 234/310 (75%), Gaps = 14/310 (4%)

Query: 86  LENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQIASSGCPPNY 145
           +EN G+S   NL  Y S   FVELVPK PGFGSGNFSEMV S GL E  QI  +GCPPNY
Sbjct: 1   MENPGIS---NLVHYPSGSGFVELVPKFPGFGSGNFSEMVGSLGLTECGQITHTGCPPNY 57

Query: 146 VPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQ 205
             NKE        N +Q  ED Q+ EE +IG + NGK RKR PESNS L+ +KN E EL+
Sbjct: 58  --NKEA-------NNAQHQEDQQLSEETSIGASPNGKRRKRVPESNSPLDPNKNTEGELR 108

Query: 206 KDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQAAKPTKDSSLSGEAPKE-YIHMRAKRG 264
           KD SG+S  I KE DEK QK EQN G N+RGKQAAK  KD + SGE PKE Y H+RA+RG
Sbjct: 109 KDLSGESCDIAKELDEKTQKTEQNPGPNLRGKQAAKQAKDDTQSGEVPKENYFHVRARRG 168

Query: 265 QATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSM 324
           QATNSHSLAERVRREKISERMR+LQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSM
Sbjct: 169 QATNSHSLAERVRREKISERMRMLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSM 228

Query: 325 KLATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGAN 384
           KLATVNPEL +D+ERILSKDILH+R G+AA +GFS G+ SS PY   IFQ  +  IP +N
Sbjct: 229 KLATVNPELQIDVERILSKDILHSRGGNAAILGFSPGI-SSHPYSHRIFQPGIQVIPNSN 287

Query: 385 PQFPPLPQVL 394
           PQF P P  +
Sbjct: 288 PQFSPAPHAV 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125664136|gb|ABN51065.1| basic helix-loop-helix protein [Sesamum indicum]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/396 (54%), Positives = 263/396 (66%), Gaps = 39/396 (9%)

Query: 8   DMGFQPRNESA-MNCSSGMMP-----QKLPGMQMNSVPMYKSVSGPDHFYGS-GWEPIVS 60
           D  FQ RN S+ +NC S +M        + GM + S  M+K  +G D FY S GW+P++S
Sbjct: 3   DRVFQHRNSSSILNCPSSVMATTSISDNVAGMSICSESMFKPPNGIDPFYSSSGWDPVIS 62

Query: 61  LNQGESFGVSSMVSHNEFA-PSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSG 119
            +Q  +FG SSMV  NEFA P+YPV LENQ M S+S+L  + SD   V +VPKIP FGSG
Sbjct: 63  QDQSGNFGNSSMVLQNEFANPNYPVLLENQTMGSSSHLVHFPSDSGLVGMVPKIPSFGSG 122

Query: 120 NFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVAT 179
           +FSE+VSSFG              N+  N     +   +NV  + +  Q  E   +G + 
Sbjct: 123 SFSEIVSSFG------------HSNFAQNNGAGVQNTVKNVEDAQDHRQDSENGVLGASP 170

Query: 180 NGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANMRGKQA 239
           NGK RKR           KNVEVE QKD + D + + KE DEKK     N+G + R +QA
Sbjct: 171 NGK-RKR-----------KNVEVEKQKDQTRDLAELPKEYDEKK-----NSGPSSRSRQA 213

Query: 240 AKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKI 298
            K  KD+S   EA KE YIH+RAKRGQATNSHSLAERVRRE+ISERMRLLQELVPGCNKI
Sbjct: 214 VKEAKDNSSGAEASKENYIHVRAKRGQATNSHSLAERVRRERISERMRLLQELVPGCNKI 273

Query: 299 TGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGF 358
           TGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELN+DIER+LSKDILH+R  +A  +G 
Sbjct: 274 TGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNVDIERLLSKDILHSRGSNATALGI 333

Query: 359 SSGMNSSRPYPPGIFQGTMPSIPGANPQFPPLPQVL 394
             G++SS P+  G+ QGT+ + PG  PQF  LPQ L
Sbjct: 334 GPGLSSSHPF-QGLPQGTLNAFPGTAPQFQSLPQNL 368

Source: Sesamum indicum

Species: Sesamum indicum

Genus: Sesamum

Family: Pedaliaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552284|ref|XP_003544498.1| PREDICTED: transcription factor bHLH74-like [Glycine max]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/402 (55%), Positives = 274/402 (68%), Gaps = 20/402 (4%)

Query: 3   AGDNDDMGFQPRNESAMNC-SSGMMPQKL--PGMQMNSVPMYKSVSGPDHFYGS-GWEPI 58
            G  + MGFQ  NES + C +SG+    +    M ++SV + K     + F  S  W+P+
Sbjct: 2   GGQENAMGFQHGNESILTCPTSGLSGANVNVSEMAISSVSIAKPSDVVNPFIASSAWDPL 61

Query: 59  VSLNQGESFGVSSMVSHNEFA---PSYPVALENQGMSSTSNLDQYSSDPSFVELVPKIPG 115
           VSL+Q +SFG SSMVSH+EFA    SYP+ L+NQG+S+TS+L QY SD +   +VPK+  
Sbjct: 62  VSLSQVQSFGGSSMVSHSEFANSNSSYPLVLDNQGISNTSHLVQYMSDSNLGGMVPKVHS 121

Query: 116 FGSGNFSEMVS--SFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEA 173
           + SG FSEMV   SF    +A +A++G P +Y P KE        N  QS  +  I EE 
Sbjct: 122 YASGGFSEMVGAGSFCQHRSADMANTGYPIHYNPIKEAPI-----NGEQSQVEDSIPEEE 176

Query: 174 AIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGAN 233
           A G A +G  RKR  + NS  + +KN E +   D  G +S   KE  EK+ K EQN GA+
Sbjct: 177 APGSAPSGNRRKRGLDHNSTFSPNKNAEGDAVNDSPGKASNGPKEH-EKRPKGEQNNGAD 235

Query: 234 MRGKQAAKPTKDS-SLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQEL 291
           +RGKQ+ K  KD+ S SGEAPKE +IH+RA+RGQATNSHSLAERVRREKISERMRLLQEL
Sbjct: 236 VRGKQSVKQAKDNNSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQEL 295

Query: 292 VPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSG 351
           VPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELN D++RILSKDIL +R G
Sbjct: 296 VPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDILQSRIG 355

Query: 352 SAATIG-FSSGMNSSRPYPPGIFQGTMPSIPGANPQFPPLPQ 392
               IG +  G+NSS  +P G F GT+  +P  + QFPPLPQ
Sbjct: 356 HG--IGAYGPGINSSHTFPNGSFHGTLAGMPSTSSQFPPLPQ 395

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577684|ref|XP_003556954.1| PREDICTED: transcription factor bHLH74-like [Glycine max]

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 222/408 (54%), Positives = 273/408 (66%), Gaps = 23/408 (5%)

Query: 1   MGAGDNDDMGFQPRNESAMNC--SSGMMP--QKLPGMQMNSVPMYK--SVSGPDHFYGSG 54
           MG  +N   GFQ  NES + C  +SG+      +  M ++SV M K  +V        S 
Sbjct: 1   MGGQENAMGGFQHGNESILTCPPTSGLSGPNVNVSEMAISSVSMAKPSNVVANPFLASST 60

Query: 55  WEPIVSLNQGESFGVSSMVSHNEFA---PSYPVALENQG-MSSTSNLDQYSSDPSFVELV 110
           W+P+VSL+Q ++FG SSMVSHNEF     SYP+ L+NQG +S+TS+L QY SD +   +V
Sbjct: 61  WDPLVSLSQAQTFGGSSMVSHNEFVNANSSYPLVLDNQGGISNTSHLVQYMSDSNLGGIV 120

Query: 111 PKIPGFGSGNFSEMVSS--FGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQ 168
           PK+  + SG FSEMV S  F    +  +A +G P +Y P KE        N  QS  +  
Sbjct: 121 PKVHSYASGGFSEMVGSGSFCQHGSGDMADTGYPTHYNPIKEAPI----INGEQSQVEDS 176

Query: 169 ICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQ 228
           I EE A G A +G  RKR  + NS  + +KN E +  KD  G +S   KE  EK+ K+EQ
Sbjct: 177 IPEEEAPGSAPSGNRRKRGLDHNSTFSPNKNAEGDAVKDSPGKASDGSKEH-EKRPKVEQ 235

Query: 229 NTGANMRGKQAAKPTKDS--SLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERM 285
           N GA++RGKQ+ K  KD+  S SGEAPKE +IH+RA+RGQATNSHSLAERVRREKISERM
Sbjct: 236 NNGADVRGKQSVKQAKDNNNSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERM 295

Query: 286 RLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDI 345
           RLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELN D++RILSKDI
Sbjct: 296 RLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDI 355

Query: 346 LHARSGSAATIG-FSSGMNSSRPYPPGIFQGTMPSIPGANPQFPPLPQ 392
           L +R G    IG +  G+NSS  +P G F GT+  +   + QFPPLPQ
Sbjct: 356 LQSRIGHG--IGAYGPGINSSHTFPNGSFHGTLAGMSSTSSQFPPLPQ 401

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509268|ref|XP_004163540.1| PREDICTED: transcription factor bHLH74-like [Cucumis sativus]

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 215/405 (53%), Positives = 264/405 (65%), Gaps = 46/405 (11%)

Query: 1   MGAGDNDDMGFQPRNESAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVS 60
           MG  +ND+MGF+  N+  MNC S M         M S            F+GSGW+P+VS
Sbjct: 1   MGDLENDEMGFRNSNDGLMNCPSTM--------AMGS------------FFGSGWDPLVS 40

Query: 61  LNQGESFGV-SSMVS-HNEFAPSYPVALENQGMSSTSNLD-QYSSDPSFVELVPKIPGFG 117
           L Q E++G  SSMVS H EF+ S+PV LEN G S T+    QY +D   +E+  K+P FG
Sbjct: 41  LGQSENYGAASSMVSSHGEFSNSFPVVLENHGGSGTTQQGVQYPTD---LEMGSKLPCFG 97

Query: 118 SGNFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGV 177
           SGNFSEM  SFG+    QI   GC  NY           +     S E+  +  E  + +
Sbjct: 98  SGNFSEMFGSFGVA--GQILG-GCSSNYR------NGGTTNTTQTSQENLPLAGEEILPL 148

Query: 178 AT---NGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANM 234
           +    NGK RKR  +S    +++K  +++L+KD SGDSS     Q+EK  ++EQN G N 
Sbjct: 149 SVGSPNGKIRKRGLDSTFPFSSNKKSDMKLKKDVSGDSS---STQEEKNAEMEQNLGGNS 205

Query: 235 RGKQAAKPTKD-SSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELV 292
           RGK   K TK+ SS S EAPKE YIH+RA+RGQATNSHSLAERVRREKISERMRLLQELV
Sbjct: 206 RGKSTGKQTKEKSSNSAEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELV 265

Query: 293 PGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGS 352
           PGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNP++N+DIERILSKDI + R  S
Sbjct: 266 PGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVNVDIERILSKDIFNIRGSS 325

Query: 353 AATIGFSSGMNSSRPYPPGI---FQGTMPSIPGANPQFPPLPQVL 394
              +GF  G+++  P PP     FQGTM S+P  + QFPP+PQ +
Sbjct: 326 GNVLGFDPGLSAVSPVPPHRMFQFQGTMSSMPTTSTQFPPMPQTM 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494803|ref|XP_003634844.1| PREDICTED: transcription factor bHLH74-like [Vitis vinifera] gi|296090643|emb|CBI41042.3| unnamed protein product [Vitis vinifera]

 Score =  311 bits (797), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 187/396 (47%), Positives = 239/396 (60%), Gaps = 30/396 (7%)

Query: 2   GAGDNDDMGFQPRNESAMNCSSGMMPQKLPGMQMNSVPMYKSVSGPDHFYGSGWEPIVSL 61
           G+GD+   GF+ ++ S ++C S           +       S++G    +   ++P V L
Sbjct: 5   GSGDS---GFEHKDGSLLDCPS-----------LGIFTSLSSLNGVTSIFTGDYDPPVPL 50

Query: 62  -NQGESFGVSSMVSHNEFAPSYP-VALENQGMSSTSNLDQYSSDPSFVELVPKIPGFGSG 119
            +  +  G+  + +H++    Y   ALENQGMSST +L QYSSDP FVELVP  P F + 
Sbjct: 51  AHNADIIGLPPLKTHDQIDDLYAGNALENQGMSSTIHLTQYSSDPRFVELVPNFPHFSTA 110

Query: 120 NFSEMVSSFGLPENAQIASSGCPPNYVPNKEGCYE----RNSRNVSQSYEDHQICEEAAI 175
            FSEMV+   LP+   I   GCPP++   K G  +    +N  N     E  QI ++  +
Sbjct: 111 GFSEMVTPRCLPKCHNI---GCPPDHPLEKNGTRKTSNLQNKTNNCAQMEGCQIADDGTM 167

Query: 176 GVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSGILKEQDEKKQKIEQNTGANMR 235
            ++   K RKR  +  S     KN+E    KD        L  QDE+KQK EQ   AN  
Sbjct: 168 ELSPIEKKRKRLADDRSQFAHLKNMEAAQPKDEC------LGRQDERKQKAEQKIVANNC 221

Query: 236 GKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPG 294
           GK      K SS +GEAPKE YIH+RAKRGQATNSHSLAERVRRE+ISERM+ LQ+LVPG
Sbjct: 222 GKLIGAEVKMSSQTGEAPKEDYIHVRAKRGQATNSHSLAERVRRERISERMKFLQDLVPG 281

Query: 295 CNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAA 354
           CNKITGKAVMLDEIINYVQSLQ+QVEFLSMKLATV PE+N+ IERILS DI H++ G+A 
Sbjct: 282 CNKITGKAVMLDEIINYVQSLQRQVEFLSMKLATVYPEMNVQIERILSSDIHHSKGGTAP 341

Query: 355 TIGFSSGMNSSRPYPPGIFQGTMPSIPGANPQFPPL 390
            +GF  GMNS+ P P    Q   P+I  +  Q  P+
Sbjct: 342 ILGFGPGMNSAYPIPQVTLQAISPAIESSTLQSSPM 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
TAIR|locus:2201906	366	AT1G10120 "AT1G10120" [Arabido	0.540	0.581	0.547	1.7e-52
UNIPROTKB|Q5VR96	437	P0038C05.31-1 "Os06g0275600 pr	0.733	0.661	0.423	1.4e-46
TAIR|locus:2205420	486	AT1G68920 [Arabidopsis thalian	0.540	0.438	0.486	4.4e-45
UNIPROTKB|Q69JJ6	428	OSJNBa0026C08.22 "TA1 protein-	0.703	0.647	0.406	2.4e-44
TAIR|locus:2079676	456	AT3G07340 "AT3G07340" [Arabido	0.256	0.221	0.732	3.6e-42
UNIPROTKB|Q5N802	481	P0004D12.24 "BHLH transcriptio	0.624	0.511	0.422	5.3e-40
UNIPROTKB|Q84LH4	327	OSJNBb0011H13.2 "Putative Heli	0.357	0.431	0.631	5.3e-40
UNIPROTKB|Q6ZCV8	365	P0028A08.20 "Os08g0487700 prot	0.378	0.408	0.583	1.3e-38
TAIR|locus:2028804	390	CIB5 "AT1G26260" [Arabidopsis	0.616	0.623	0.403	8.9e-38
TAIR|locus:2095198	371	AT3G23690 "AT3G23690" [Arabido	0.751	0.797	0.375	1.1e-37

TAIR|locus:2201906 AT1G10120 "AT1G10120" [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 132/241 (54%), Positives = 160/241 (66%)

Query:   154 ERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSS 213
             ER  R    S+EDH    + A+ +  +   ++R PE+ S  N  K VE E Q+DP   + 
Sbjct:   117 ERLIRAGESSHEDHHQVSDDAV-LGASPVGKRRLPEAESQWNK-KAVE-EFQEDPQRGND 173

Query:   214 GILXXXXXXXXXXXXNTGANMRGKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSL 272
                                N + K+     K+SS S EAPKE YIHMRA+RGQATNSHSL
Sbjct:   174 ------------QSQKKHKNDQSKETVN--KESSQSEEAPKENYIHMRARRGQATNSHSL 219

Query:   273 AERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPE 332
             AERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPE
Sbjct:   220 AERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPE 279

Query:   333 LNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTMPSIPGA-NPQFPPLP 391
             +N+DI+RIL+KD+L +R  +  T+G +       P+  G FQG +P++    NPQ+ PLP
Sbjct:   280 INIDIDRILAKDLLQSRDRNTPTLGLN-------PFA-G-FQGNIPNLSATTNPQYNPLP 330

Query:   392 Q 392
             Q
Sbjct:   331 Q 331

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q5VR96 P0038C05.31-1 "Os06g0275600 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 133/314 (42%), Positives = 168/314 (53%)

Query:    90 GMSSTSNLDQYSSDPSFVELVPKIPGFGSGNFSEMVSS-F-GLPENAQIASSGCPPNYVP 147
             GM S      + + P FV+     P +  GN   M++  F G+ +      +G  P    
Sbjct:    79 GMLSAGAPPPFVATPGFVDSTAGFPCYNGGNLGAMINHPFPGIHQPLGDFQNGVEP--CR 136

Query:   148 NKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKD 207
               E      S+NVSQ+ E  Q   E    V ++ K     P  N     D+   V   K 
Sbjct:   137 EIEDIEIEGSKNVSQTGEKQQGDGETTHAVDSSSKELSM-PGRNGGAGHDEGTRVSCSKK 195

Query:   208 P--SGDSSGI--------LXXXXXXXXXXXXNTGANMR-----GKQAAKPTKDSSLSGEA 252
                SG   G+        L              G   R     GK + K  KD++  G  
Sbjct:   196 RKRSGQDGGVKHAEGGEQLATVGSAQKNEDDEKGEPKRSSVASGKSSGKQIKDNA--GSP 253

Query:   253 PKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYV 312
              ++YIH+RA+RGQATNSHSLAERVRREKISERM+ LQ+LVPGC+K+TGKAVMLDEIINYV
Sbjct:   254 KEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEIINYV 313

Query:   313 QSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAAT-IGFSSGMNSSRPYPPG 371
             QSLQ+QVEFLSMKLA+VNP L+ +IERILSKDI   R  +A++  GF   +   R +PP 
Sbjct:   314 QSLQRQVEFLSMKLASVNPTLDFNIERILSKDIFQCRGTTASSAFGFFPDIVHPRLHPPK 373

Query:   372 IFQGTMPSIPGANP 385
               Q  MPSI   NP
Sbjct:   374 YTQVGMPSI--VNP 385

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2205420 AT1G68920 [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 110/226 (48%), Positives = 145/226 (64%)

Query:   157 SRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNS-LLNTDKNVEVELQKDPSGDSSGI 215
             S NVS+  +      +     ++N K RKR  + NS    + ++ + E + D +GD    
Sbjct:   211 SGNVSEDTQSSGGNGQKGRETSSNTKKRKRNGQKNSEAAQSHRSQQSEEEPDNNGDEKRN 270

Query:   216 LXXXXXXXXXXXXNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAER 275
                          N+G   +GKQ++ P KD          YIH+RA+RGQATNSHSLAER
Sbjct:   271 -DEQSPNSPGKKSNSG-KQQGKQSSDPPKDG---------YIHVRARRGQATNSHSLAER 319

Query:   276 VRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNL 335
             VRREKISERM+ LQ+LVPGCNK+TGKAVMLDEIINYVQSLQ+QVEFLSMKLATVNP+++ 
Sbjct:   320 VRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDF 379

Query:   336 DIERILSKDILHARSGSAATIGFSSGMNSSRP-YPPGIFQGTMPSI 380
             ++E +L+KD L  R+GS++T  F   M+ + P  P G  Q T+ SI
Sbjct:   380 NLEGLLAKDALQLRAGSSSTTPFPPNMSMAYPPLPHGFMQQTLSSI 425

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q69JJ6 OSJNBa0026C08.22 "TA1 protein-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 119/293 (40%), Positives = 160/293 (54%)

Query:    97 LDQYSSDPSFVELVPKIPGFGSGNFSEMVSSFGLPENAQ-IASSGCPPNYVPNKEGCYER 155
             L  +  D  F+E   +   FG G  +     +G  + A   A  G     + +       
Sbjct:    94 LGHFPVDSGFIERAARSTCFGGGMMAG--GPYGAADQAMGDAFGGTAEGLMDHHRNVGND 151

Query:   156 NSRNVSQSYEDHQICEEAAIG-VATNGKTRKRAPESNSLLNTDKNVEVELQKDPSGDSSG 214
              +   + +  D     E A G  ++ G   K+    N ++ TD+     L  D + +S  
Sbjct:   152 KAEEFAGNGHDEVPSSEVAGGDCSSKGSDSKKRRRPNEVMGTDQVHSSNLPSDSANES-- 209

Query:   215 ILXXXXXXXXXXXXNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQATNSHSLAE 274
             +               G   +GK  AK T +S       +EYIH+RA+RGQATNSHSLAE
Sbjct:   210 VHSKDKGEESSPATTNGGKSKGK-GAKETSESQ-----KEEYIHVRARRGQATNSHSLAE 263

Query:   275 RVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELN 334
             R+RREKISERM+LLQ+LVPGC+K+TGKAVMLDEIINYVQSLQ+QVEFLSMKLATVNP L+
Sbjct:   264 RLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLD 323

Query:   335 LDIERILSKDILHARSGSAATIGFSSGMNSSRPY--PPGIFQGTMPSIPGANP 385
             L+IE +LSKD+L      +++IGFS  M   +     PG+  G    +  ANP
Sbjct:   324 LNIEGLLSKDLLRFPGVPSSSIGFSPEMMHPQLQLSQPGLIHGGTAGM--ANP 374

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2079676 AT3G07340 "AT3G07340" [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
 Identities = 74/101 (73%), Positives = 92/101 (91%)

Query:   245 DSSLSGEAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVM 304
             D + S +  K+YIH+RA+RGQAT+SHSLAERVRREKISERM+LLQ+LVPGCNK+TGKA+M
Sbjct:   244 DKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALM 303

Query:   305 LDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDI 345
             LDEIINYVQSLQ+QVEFLSMKL++VN  L+ +++ +LSKDI
Sbjct:   304 LDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKDI 344

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q5N802 P0004D12.24 "BHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 118/279 (42%), Positives = 155/279 (55%)

Query:    83 PVALENQGMSSTSNLDQYSSDPSFVELVPKIPGF------GSGNFSEM-VSSFGLPENAQ 135
             P+ LEN  +    +LDQ+ +DP F E   ++ GF      G G +     + FGLP+   
Sbjct:   103 PI-LEN--LMPMGHLDQFLADPGFAERAARLSGFDARGGGGGGGYGGAGPAQFGLPDAGA 159

Query:   136 IASSGCPPNYVPNKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLN 195
               +S         KE     N+R+ S   +      E     A++G  RKR         
Sbjct:   160 AGAS---------KE-MELGNTRDESSVSDPAPGGAEIPPKGASDGNARKRKASGKGK-G 208

Query:   196 TDKNVEVELQKDPSGDSSGI-LXXXXXXXXXXXXNTG------ANMRGKQAAKPTKDSSL 248
              D  +     K+   DSSG               N+G      +N       K  KDSS 
Sbjct:   209 KDSPMSTSAAKE---DSSGKRCKSTEESNAAAEENSGKGKAAQSNSENGGGKKQGKDSSS 265

Query:   249 SG-EAPKEYIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDE 307
                E PK+YIH+RA+RG+AT+SHSLAERVRREKIS+RM+LLQ+LVPGCNK+ GKAVMLDE
Sbjct:   266 KPPEPPKDYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDE 325

Query:   308 IINYVQSLQQQVEFLSMKLATVNPELNLD-IERILSKDI 345
             IINYVQSLQ+QVEFLSMKLATVNP+L+ + +  +L+KD+
Sbjct:   326 IINYVQSLQRQVEFLSMKLATVNPQLDFNNLPNLLAKDM 364

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q84LH4 OSJNBb0011H13.2 "Putative Helix-loop-helix DNA-binding domain containing protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 91/144 (63%), Positives = 112/144 (77%)

Query:   237 KQAAK-PTKDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPG 294
             K  +K  +K+ S  G+  KE Y+H+RAKRGQATNSHSLAER+RR+KISERM+LLQ+LVPG
Sbjct:   123 KSCSKMQSKEDSSDGDGTKEDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPG 182

Query:   295 CNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERILSKDILHARSGSAA 354
             C+KITGKAVMLDEIINYVQSLQ+QVEFLSMKLATVNPEL+ DIE+ILSK ++ ++    A
Sbjct:   183 CSKITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPELSFDIEQILSKQMMLSQDRHLA 242

Query:   355 TIGFSSGMNSS-RPYPPGIFQGTM 377
               G   G ++    +  GI Q  M
Sbjct:   243 FYGVDPGSSALVAHFNQGIMQPEM 266

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q6ZCV8 P0028A08.20 "Os08g0487700 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 98/168 (58%), Positives = 121/168 (72%)

Query:   236 GKQAAKPTKDSSLSGEAPKE-YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPG 294
             GK   K  KD+   GEA KE Y H+RA++GQATN+HSLAER+RREKISERM+LLQ+LVPG
Sbjct:   155 GKSKGKGAKDA---GEAQKEGYSHVRARKGQATNNHSLAERLRREKISERMKLLQDLVPG 211

Query:   295 CNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDIERIL--SKDILH-ARSG 351
             C+K+TGKA+MLDEIINYVQSLQ+QVEFLSMKL+ VNP ++LDIE ++  SKD+L      
Sbjct:   212 CSKVTGKALMLDEIINYVQSLQRQVEFLSMKLSAVNPRIDLDIESLVNNSKDVLRFPGQP 271

Query:   352 SAATIGFS------SGMNSSRPYPPGIFQGTMPSIPGANPQ-FPPLPQ 392
             S+A +GFS       G+  SRP   GI QG +  +   NP  F  L Q
Sbjct:   272 SSAPMGFSFSTEMMPGLQLSRP---GILQGGVHGM--INPDVFTSLMQ 314

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2028804 CIB5 "AT1G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 111/275 (40%), Positives = 146/275 (53%)

Query:    96 NLDQYSSDPSFVELVPKIPGFGSGNF--SEMVSSFGLPENAQI------ASSGCPPNYVP 147
             N+ Q+ +D  F+E   K   FG G    ++  SS G+P++  +        SG   +  P
Sbjct:    73 NMAQFPADSGFIERAAKFSFFGCGEMMMNQQQSSLGVPDSTGLFLQDTQIPSGSKLDNGP 132

Query:   148 NKEGCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDKNVEVELQKD 207
               +       R+++   ED Q         A  G+T  +   S       K+ E E  K 
Sbjct:   133 LTDASKLVKERSINNVSEDSQSSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDKK 192

Query:   208 PSGDSSGILXXXXXXXXXXXXNTGANMRGKQAAKPTKDSSLSGEAPKEYIHMRAKRGQAT 267
                + S                + AN    +  K   DS   G     YIHMRA+RGQAT
Sbjct:   193 QKDEQSP--------------TSNANKTNSE--KQPSDSLKDG-----YIHMRARRGQAT 231

Query:   268 NSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLA 327
             NSHSLAERVRREKISERM+ LQ+LVPGC+K+TGKAVMLDEIINYVQSLQ Q+EFLSMKL+
Sbjct:   232 NSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLS 291

Query:   328 TVNPELNLDIERILSKDILHARSGSAATIGFSSGM 362
              VNP L+ ++E +L+KD L +   SA T   +  M
Sbjct:   292 AVNPVLDFNLESLLAKDALQS---SAPTFPHNMSM 323

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0048513 "organ development" evidence=RCA

TAIR|locus:2095198 AT3G23690 "AT3G23690" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 117/312 (37%), Positives = 161/312 (51%)

Query:    81 SYPVALENQGMSSTSNLDQYSSDPSFVELVP-KIPGFGSGNFSEMVSSFGLPENAQIASS 139
             S P    N+G      L +Y ++P   E+ P  +  F S N S++  +F  P +  I   
Sbjct:    19 SDPFGNGNEGTIGDF-LGRYCNNPQ--EISPLTLQSF-SLN-SQISENF--PISGGIRFP 71

Query:   140 GCPPNYVPNKE-GCYERNSRNVSQSYEDHQICEEAAIGVATNGKTRKRAPESNSLLNTDK 198
               P  +  ++E G       +   S  D     +      +N + RK  P  N   +   
Sbjct:    72 PYPGQFGSDREFGSQPTTQESNKSSLLDPDSVSDRVHTTKSNSRKRKSIPSGNGKESPAS 131

Query:   199 NVEVELQKDPSGDSSGILXXXXXXXXXXXXNTGANMRGKQAAK-PTKDSSLSGEAPKEYI 257
             +         SG++ G               +  N   K  +K   KD +   EAPK+YI
Sbjct:   132 SSLTASNSKVSGENGG--SKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYI 189

Query:   258 HMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQ 317
             H+RA+RGQAT+SHSLAER RREKISERM LLQ+LVPGCN+ITGKAVMLDEIINYVQSLQ+
Sbjct:   190 HVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQR 249

Query:   318 QVEFLSMKLATVNPELNLDIERILSKDILHARSGSAATIGFSSGMNSSRPYPPGIFQGTM 377
             QVEFLSMKLATVNP +  +    LS +++  + G + T    + M  S    P  +    
Sbjct:   250 QVEFLSMKLATVNPRMEFNANASLSTEMI--QPGESLTQSLYA-MACSEQRLPSAYYSLG 306

Query:   378 PSIPG-ANPQFP 388
              ++P  ++ QFP
Sbjct:   307 KNMPRFSDTQFP 318

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00050553 hypothetical protein (407 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	394
smart00353	53	smart00353, HLH, helix loop helix domain	9e-12
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	7e-11
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	2e-08

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 59.2 bits (144), Expect = 9e-12
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 271 SLAERVRREKISERMRLLQELVPGCNKITG--KAVMLDEIINYVQSLQQQVE 320
           +  ER RR KI+E    L+ L+P   K     KA +L   I Y++SLQ++++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 56.8 bits (138), Expect = 7e-11
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 263 RGQATNSHSLAERVRREKISERMRLLQELVPGCNKITG--KAVMLDEIINYVQSLQQQVE 320
           R     +H+L ER RRE+I++    L+ L+P         KA +L + ++Y++SLQ+ ++
Sbjct: 1   RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 269 SHSLAERVRREKISERMRLLQELVPGCN--KITGKAVMLDEIINYVQSLQ 316
           +H+  ER RR++I++    L+EL+P     K++ KA +L   I Y++ LQ
Sbjct: 4   AHNERERRRRDRINDAFEELRELLPTPPNKKLS-KAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	394
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.36
smart00353	53	HLH helix loop helix domain.	99.3
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.26
KOG1318	411	consensus Helix loop helix transcription factor EB	99.21
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	98.81
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.36
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.04
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.98
PLN03217	93	transcription factor ATBS1; Provisional	97.79
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	97.68
KOG0561	373	consensus bHLH transcription factor [Transcription	97.11
KOG3960	284	consensus Myogenic helix-loop-helix transcription	96.96
KOG4029	228	consensus Transcription factor HAND2/Transcription	96.55
KOG3910	632	consensus Helix loop helix transcription factor [T	95.17
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	88.91
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	85.15
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	84.7

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.36  E-value=7e-13  Score=98.80  Aligned_cols=52  Identities=37%  Similarity=0.641  Sum_probs=48.2

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHccCCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 016131          268 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVE  320 (394)
Q Consensus       268 ~~HslaERrRRekIner~~~Lq~LVP~~---~K~tdKAsIL~eAI~YIK~LQ~qVe  320 (394)
                      ..|+..||+||++||+.|..|+.|||.+   .+ .+|+.||+.||+||++|+.+++
T Consensus         6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k-~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKK-LSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999999999   55 5999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.30  E-value=4.8e-12  Score=92.84  Aligned_cols=49  Identities=39%  Similarity=0.569  Sum_probs=44.6

Q ss_pred             chhhHHHHHHHHHHHHHHHccCCC---CCCCCChhhHHHHHHHHHHHHHHHHH
Q 016131          271 SLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQQVE  320 (394)
Q Consensus       271 slaERrRRekIner~~~Lq~LVP~---~~K~tdKAsIL~eAI~YIK~LQ~qVe  320 (394)
                      +..||+||++||+.|..|+.|||.   ..+ .+|++||++||+||++|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k-~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKK-LSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999996   445 4999999999999999999986

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.26  E-value=5.6e-12  Score=93.97  Aligned_cols=48  Identities=38%  Similarity=0.705  Sum_probs=44.2

Q ss_pred             CcchhhHHHHHHHHHHHHHHHccCCCC----CCCCChhhHHHHHHHHHHHHH
Q 016131          269 SHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ  316 (394)
Q Consensus       269 ~HslaERrRRekIner~~~Lq~LVP~~----~K~tdKAsIL~eAI~YIK~LQ  316 (394)
                      .|+..||+||++||+.|..|+.|||.+    ....+|++||+.||+||++||
T Consensus         4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            699999999999999999999999997    233599999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.21  E-value=8.9e-12  Score=127.13  Aligned_cols=77  Identities=35%  Similarity=0.602  Sum_probs=58.0

Q ss_pred             CCccCCcchhhHHHHHHHHHHHHHHHccCCCCCCC---CChhhHHHHHHHHHHHHHHHHHHH------HHhHhhcCCccc
Q 016131          264 GQATNSHSLAERVRREKISERMRLLQELVPGCNKI---TGKAVMLDEIINYVQSLQQQVEFL------SMKLATVNPELN  334 (394)
Q Consensus       264 ~~a~~~HslaERrRRekIner~~~Lq~LVP~~~K~---tdKAsIL~eAI~YIK~LQ~qVe~L------e~~~~~~~p~~~  334 (394)
                      +++++.|+++|||||++||+||+.|..|||.|+.-   .+|..||..+++||+.||+..+..      +++++..+..|.
T Consensus       231 r~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~  310 (411)
T KOG1318|consen  231 RRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELA  310 (411)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHH
Confidence            34456899999999999999999999999999431   379999999999999999655522      233444444444


Q ss_pred             ccHHHH
Q 016131          335 LDIERI  340 (394)
Q Consensus       335 ~~~~~~  340 (394)
                      ..++.|
T Consensus       311 ~rieeL  316 (411)
T KOG1318|consen  311 LRIEEL  316 (411)
T ss_pred             HHHHHH
Confidence            445544

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=98.81  E-value=4.3e-09  Score=98.59  Aligned_cols=64  Identities=31%  Similarity=0.525  Sum_probs=57.1

Q ss_pred             CcchhhHHHHHHHHHHHHHHHccCCCCCCC------CChhhHHHHHHHHHHHHHHHHHHHHHhHhhcCCc
Q 016131          269 SHSLAERVRREKISERMRLLQELVPGCNKI------TGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPE  332 (394)
Q Consensus       269 ~HslaERrRRekIner~~~Lq~LVP~~~K~------tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~~p~  332 (394)
                      .|.-+||+||+.|+..+..||.|||.|...      +.||.||.++|+||.+|+.++...++++.+++.+
T Consensus        65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~  134 (229)
T KOG1319|consen   65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKD  134 (229)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999977542      3699999999999999999998888888877665

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.36  E-value=1.5e-07  Score=91.09  Aligned_cols=52  Identities=29%  Similarity=0.431  Sum_probs=45.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHHccCCCCCCC-------CChhhHHHHHHHHHHHHHHHHH
Q 016131          269 SHSLAERVRREKISERMRLLQELVPGCNKI-------TGKAVMLDEIINYVQSLQQQVE  320 (394)
Q Consensus       269 ~HslaERrRRekIner~~~Lq~LVP~~~K~-------tdKAsIL~eAI~YIK~LQ~qVe  320 (394)
                      .|.+.||+||.|||+.|..|++|||.+.++       .+||.||+-|++|++.||++..
T Consensus        35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~   93 (250)
T KOG4304|consen   35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ   93 (250)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence            578999999999999999999999966443       2799999999999999996543

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.04  E-value=4.3e-06  Score=91.94  Aligned_cols=52  Identities=21%  Similarity=0.375  Sum_probs=47.7

Q ss_pred             cCCcchhhHHHHHHHHHHHHHHHccCCCCC---CCCChhhHHHHHHHHHHHHHHH
Q 016131          267 TNSHSLAERVRREKISERMRLLQELVPGCN---KITGKAVMLDEIINYVQSLQQQ  318 (394)
Q Consensus       267 ~~~HslaERrRRekIner~~~Lq~LVP~~~---K~tdKAsIL~eAI~YIK~LQ~q  318 (394)
                      +..|+.+|||||+++|..|.+|.+|||.|.   .+.||-.||.+||..||.++++
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            348999999999999999999999999997   4469999999999999999875

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.98  E-value=1.3e-05  Score=77.31  Aligned_cols=61  Identities=23%  Similarity=0.326  Sum_probs=49.5

Q ss_pred             cCCcchhhHHHHHHHHHHHHHHHccCCCCCCCC--ChhhHHHHHHHHHHHHHHHHHHHHHhHh
Q 016131          267 TNSHSLAERVRREKISERMRLLQELVPGCNKIT--GKAVMLDEIINYVQSLQQQVEFLSMKLA  327 (394)
Q Consensus       267 ~~~HslaERrRRekIner~~~Lq~LVP~~~K~t--dKAsIL~eAI~YIK~LQ~qVe~Le~~~~  327 (394)
                      +..|+.-||+||..|.++|..|+.+||....-+  ..++||+.|++||+.|+.+....+..++
T Consensus        60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e  122 (232)
T KOG2483|consen   60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIE  122 (232)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence            347999999999999999999999999654432  2689999999999999976655554443

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.79  E-value=4.8e-05  Score=63.75  Aligned_cols=55  Identities=29%  Similarity=0.530  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHccCCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 016131          275 RVRREKISERMRLLQELVPGCN------KITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN  330 (394)
Q Consensus       275 RrRRekIner~~~Lq~LVP~~~------K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~~  330 (394)
                      |-=-+.|++-+..||.|+|...      +. .-+-+|+||++||+.|+++|..|++++.++-
T Consensus        16 risddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvDdLSerLs~LL   76 (93)
T PLN03217         16 RISEDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVDDLSERLSELL   76 (93)
T ss_pred             CCCHHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445889999999999999642      32 5677999999999999999999999998753

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=97.68  E-value=1.7e-05  Score=88.10  Aligned_cols=67  Identities=27%  Similarity=0.502  Sum_probs=57.3

Q ss_pred             CCccCCcchhhHHHHHHHHHHHHHHHccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 016131          264 GQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN  330 (394)
Q Consensus       264 ~~a~~~HslaERrRRekIner~~~Lq~LVP~~~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~~  330 (394)
                      +..+++|+++|||-|-.||++|..|++|||+..-+..|..+|..||+||++||..-+.|....+.+.
T Consensus       274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~  340 (953)
T KOG2588|consen  274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR  340 (953)
T ss_pred             CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence            3557799999999999999999999999998765558999999999999999987777765554443

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.11  E-value=0.00024  Score=71.22  Aligned_cols=49  Identities=27%  Similarity=0.470  Sum_probs=43.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHHccCCC--CCCCCChhhHHHHHHHHHHHHHHH
Q 016131          269 SHSLAERVRREKISERMRLLQELVPG--CNKITGKAVMLDEIINYVQSLQQQ  318 (394)
Q Consensus       269 ~HslaERrRRekIner~~~Lq~LVP~--~~K~tdKAsIL~eAI~YIK~LQ~q  318 (394)
                      .-+-.||||=.-||-.|..||.|+|.  ..|+ .||.||+.+.+||.+|+.+
T Consensus        63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~  113 (373)
T KOG0561|consen   63 IANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGH  113 (373)
T ss_pred             hhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhc
Confidence            34667999999999999999999995  5676 8999999999999999854

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=96.96  E-value=0.0018  Score=63.68  Aligned_cols=56  Identities=23%  Similarity=0.299  Sum_probs=46.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHcc-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 016131          270 HSLAERVRREKISERMRLLQEL-VPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMK  325 (394)
Q Consensus       270 HslaERrRRekIner~~~Lq~L-VP~~~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~  325 (394)
                      -.+.||||=.|+||-|.+|+.= +++-+.---|..||..||+||..||.-++++...
T Consensus       122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~  178 (284)
T KOG3960|consen  122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA  178 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4578999999999999999753 4555544479999999999999999988887643

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=96.55  E-value=0.0021  Score=60.88  Aligned_cols=58  Identities=21%  Similarity=0.268  Sum_probs=49.3

Q ss_pred             CcchhhHHHHHHHHHHHHHHHccCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHhH
Q 016131          269 SHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLSMKL  326 (394)
Q Consensus       269 ~HslaERrRRekIner~~~Lq~LVP~~---~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~  326 (394)
                      .++..||.|=+.+|..|..||.+||..   .|+..|..+|..||.||++|+.-++.-+...
T Consensus       112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            466779999999999999999999942   3445899999999999999999888776554

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=95.17  E-value=0.023  Score=60.51  Aligned_cols=55  Identities=25%  Similarity=0.282  Sum_probs=45.7

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHccCCC---CCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 016131          268 NSHSLAERVRREKISERMRLLQELVPG---CNKITGKAVMLDEIINYVQSLQQQVEFL  322 (394)
Q Consensus       268 ~~HslaERrRRekIner~~~Lq~LVP~---~~K~tdKAsIL~eAI~YIK~LQ~qVe~L  322 (394)
                      ...+..||.|=..|||-|++|-.+.--   ..|-.-|..||-.||.-|-.|++||.+-
T Consensus       528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER  585 (632)
T KOG3910|consen  528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER  585 (632)
T ss_pred             hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence            368899999999999999999887642   2222259999999999999999999873

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=88.91  E-value=0.21  Score=46.43  Aligned_cols=48  Identities=25%  Similarity=0.421  Sum_probs=42.0

Q ss_pred             CcchhhHHHHHHHHHHHHHHHccCCCC--CCCCChhhHHHHHHHHHHHHHH
Q 016131          269 SHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQ  317 (394)
Q Consensus       269 ~HslaERrRRekIner~~~Lq~LVP~~--~K~tdKAsIL~eAI~YIK~LQ~  317 (394)
                      .|++-||+|-..+|+-|..||.+||..  .|+ .|.--|.-|-.||-+|=+
T Consensus        81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~~  130 (173)
T KOG4447|consen   81 MANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLYQ  130 (173)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhhh
Confidence            599999999999999999999999964  565 788889999999988854

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=85.15  E-value=0.62  Score=51.67  Aligned_cols=43  Identities=33%  Similarity=0.367  Sum_probs=36.3

Q ss_pred             hhhHHHHHHHHHHHHHHHccCCCCCCC---CChhhHHHHHHHHHHH
Q 016131          272 LAERVRREKISERMRLLQELVPGCNKI---TGKAVMLDEIINYVQS  314 (394)
Q Consensus       272 laERrRRekIner~~~Lq~LVP~~~K~---tdKAsIL~eAI~YIK~  314 (394)
                      -+.|.||.|-|+-|.+|..+||--..+   -|||+|+.-||-|++-
T Consensus        52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl   97 (768)
T KOG3558|consen   52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL   97 (768)
T ss_pred             hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence            458999999999999999999933221   3999999999999973

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=84.70  E-value=0.85  Score=49.62  Aligned_cols=39  Identities=21%  Similarity=0.445  Sum_probs=34.5

Q ss_pred             hHHHHHHHHHHHHHHHccCC----CCCCCCChhhHHHHHHHHHH
Q 016131          274 ERVRREKISERMRLLQELVP----GCNKITGKAVMLDEIINYVQ  313 (394)
Q Consensus       274 ERrRRekIner~~~Lq~LVP----~~~K~tdKAsIL~eAI~YIK  313 (394)
                      -+|-|+|+|-.+..|.+|+|    .+.|+ ||.+||.-++-|++
T Consensus        33 SKRHRdRLNaELD~lAsLLPfpqdiisKL-DkLSVLRLSVSyLr   75 (712)
T KOG3560|consen   33 SKRHRDRLNAELDHLASLLPFPQDIISKL-DKLSVLRLSVSYLR   75 (712)
T ss_pred             chhHHHHhhhHHHHHHHhcCCCHHHHhhh-hhhhhhhhhHHHHH
Confidence            35668999999999999999    46787 99999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	394
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	1e-17
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	5e-09
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	4e-07
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	4e-07
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 76.3 bits (188), Expect = 1e-17
 Identities = 17/73 (23%), Positives = 39/73 (53%)

Query: 262 KRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEF 321
            RG+   +H+  E+  R  I++++  L++LV G      K+ +L + I+Y++ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 322 LSMKLATVNPELN 334
           L  +  ++   ++
Sbjct: 62  LKQENLSLRTAVH 74

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 269 SHSLAERVRREKISERMRLLQELVPGCNKITG-----KAVMLDEIINYVQSLQQQVE 320
            H+  ER RR+KI+  +  L +++P  +  +      K  +L +  +Y+Q L+Q   
Sbjct: 8   QHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 269 SHSLAERVRREKISERMRLLQELVPGCN--KITGKAVMLDEIINYVQSLQQQ 318
            H+  ER RR+ I +    L++ VP     K + +A +LD+   Y+Q ++++
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKAS-RAQILDKATEYIQYMRRK 55

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 258 HMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCN---KITGKAVMLDEIINYVQS 314
           HM  KR     +H++ ER RR ++      L++ +P      K   K V+L +   Y+ S
Sbjct: 2   HMNVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAP-KVVILKKATAYILS 56

Query: 315 LQQQVEFLS---MKLATVNPELNLDIERI 340
           +Q + + L      L     +L   +E++
Sbjct: 57  VQAEEQKLISEEDLLRKRREQLKHKLEQL 85

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 269 SHSLAERVRREKISERMRLLQELVPGCNKI-TGKAVMLDEIINYVQSLQQQVEFLSMKL 326
            H+  ER RR+ I +    L++ VP        +A +LD+   Y+Q ++++       +
Sbjct: 15  HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 73

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 25/208 (12%), Positives = 61/208 (29%), Gaps = 65/208 (31%)

Query: 196 TDKNVEVELQKDPSGDSS-----GILKEQDEK------KQKIEQNTGANMRGKQAAKPTK 244
           + + ++  +       S        L  + E+      ++ +  N    M         +
Sbjct: 47  SKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM--SPIKTEQR 103

Query: 245 DSSLSGEAPKEYIHMRAKRGQATNSHSLAER--VRREKISERMRLLQELVP--------- 293
             S+     + YI  R +     ++   A+    R +   +  + L EL P         
Sbjct: 104 QPSMM---TRMYIEQRDR--LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 294 -GCNKITGKAVML----------------------------DEIINYVQSLQQQVE--FL 322
            G     GK  +                             + ++  +Q L  Q++  + 
Sbjct: 159 LGS----GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 323 SMKLATVNPELNLDIERILSKDILHARS 350
           S    + N +L +   +   + +L ++ 
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	394
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.66
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.64
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.53
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.52
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.51
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.48
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.47
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.46
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.42
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.34
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.27
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.93
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	98.88
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.83
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.82
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.79
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.35
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.65

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.66  E-value=8.7e-17  Score=137.63  Aligned_cols=85  Identities=28%  Similarity=0.412  Sum_probs=51.0

Q ss_pred             hhhhcccCCCccCCcchhhHHHHHHHHHHHHHHHccCCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHHHh------H
Q 016131          256 YIHMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGCNK---ITGKAVMLDEIINYVQSLQQQVEFLSMK------L  326 (394)
Q Consensus       256 ~~~~Rakr~~a~~~HslaERrRRekIner~~~Lq~LVP~~~K---~tdKAsIL~eAI~YIK~LQ~qVe~Le~~------~  326 (394)
                      .....+++.+.+..|+++||+||++||++|..|++|||+|.+   +.+|++||++||+||++||.+++.|+..      +
T Consensus        17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l   96 (118)
T 4ati_A           17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKL   96 (118)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred             hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556667777888899999999999999999999999999864   2489999999999999999999999854      3


Q ss_pred             hhcCCcccccHHHH
Q 016131          327 ATVNPELNLDIERI  340 (394)
Q Consensus       327 ~~~~p~~~~~~~~~  340 (394)
                      +..+..+...++.|
T Consensus        97 ~~~n~~L~~riqeL  110 (118)
T 4ati_A           97 EHANRHLLLRVQEL  110 (118)
T ss_dssp             --------------
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344444445544

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.64  E-value=6.1e-17  Score=130.35  Aligned_cols=64  Identities=23%  Similarity=0.380  Sum_probs=58.4

Q ss_pred             cCCcchhhHHHHHHHHHHHHHHHccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 016131          267 TNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN  330 (394)
Q Consensus       267 ~~~HslaERrRRekIner~~~Lq~LVP~~~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~~  330 (394)
                      +..|+++||+||++||++|..|++|||++..+++|++||++||+||++||.+++.|+.+++.+.
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~   70 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999999999999999844469999999999999999999999999887654

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.53  E-value=1.6e-15  Score=117.20  Aligned_cols=54  Identities=30%  Similarity=0.441  Sum_probs=47.9

Q ss_pred             cCCcchhhHHHHHHHHHHHHHHHccCCCCCCC------CChhhHHHHHHHHHHHHHHHHH
Q 016131          267 TNSHSLAERVRREKISERMRLLQELVPGCNKI------TGKAVMLDEIINYVQSLQQQVE  320 (394)
Q Consensus       267 ~~~HslaERrRRekIner~~~Lq~LVP~~~K~------tdKAsIL~eAI~YIK~LQ~qVe  320 (394)
                      +.+|+++||+||++||+.|..|+.|||.+.+.      ..||+||+.||+||+.||++|+
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            35899999999999999999999999977432      3699999999999999998764

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.52  E-value=4.2e-15  Score=117.86  Aligned_cols=57  Identities=19%  Similarity=0.415  Sum_probs=51.3

Q ss_pred             cCCcchhhHHHHHHHHHHHHHHHccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 016131          267 TNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLS  323 (394)
Q Consensus       267 ~~~HslaERrRRekIner~~~Lq~LVP~~~K~tdKAsIL~eAI~YIK~LQ~qVe~Le  323 (394)
                      +.+|+++||+||++||++|..|+.|||++..+.||++||+.||+||+.||.++.-|+
T Consensus         9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B            9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            348999999999999999999999999865335999999999999999999987664

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.51  E-value=3.6e-15  Score=114.50  Aligned_cols=55  Identities=27%  Similarity=0.432  Sum_probs=49.1

Q ss_pred             ccCCcchhhHHHHHHHHHHHHHHHccCCCCCC-----CCChhhHHHHHHHHHHHHHHHHH
Q 016131          266 ATNSHSLAERVRREKISERMRLLQELVPGCNK-----ITGKAVMLDEIINYVQSLQQQVE  320 (394)
Q Consensus       266 a~~~HslaERrRRekIner~~~Lq~LVP~~~K-----~tdKAsIL~eAI~YIK~LQ~qVe  320 (394)
                      .+..|+++||+||++||+.|..|+.|||.|..     +.+|++||++||+||++||++++
T Consensus         5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            45689999999999999999999999999872     24999999999999999998753

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.48  E-value=4e-15  Score=118.27  Aligned_cols=52  Identities=31%  Similarity=0.521  Sum_probs=47.1

Q ss_pred             CccCCcchhhHHHHHHHHHHHHHHHccCCCC----CCCCChhhHHHHHHHHHHHHHH
Q 016131          265 QATNSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQQ  317 (394)
Q Consensus       265 ~a~~~HslaERrRRekIner~~~Lq~LVP~~----~K~tdKAsIL~eAI~YIK~LQ~  317 (394)
                      +++..|+++||+||++||+.|.+|+.|||.|    .|+ |||+||+.||+||+.||.
T Consensus         8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence            3455899999999999999999999999988    565 999999999999999974

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.47  E-value=4.4e-14  Score=112.73  Aligned_cols=61  Identities=25%  Similarity=0.458  Sum_probs=56.7

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHccCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 016131          268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV  329 (394)
Q Consensus       268 ~~HslaERrRRekIner~~~Lq~LVP~~--~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~  329 (394)
                      ..|+..||+||.+||+.|..|+.|||.+  .| .+|+.||..||+||+.||.+++.|+.+++.+
T Consensus        14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L   76 (80)
T 1hlo_A           14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDL   76 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999987  46 4999999999999999999999999988765

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.46  E-value=6.4e-14  Score=112.20  Aligned_cols=62  Identities=24%  Similarity=0.455  Sum_probs=56.6

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHccCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 016131          268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN  330 (394)
Q Consensus       268 ~~HslaERrRRekIner~~~Lq~LVP~~--~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~~  330 (394)
                      ..|+..||+||++||+.|..|+++||.+  .| .+|++||..||+||+.||.+++.|+.+++.+.
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~   67 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDLK   67 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3799999999999999999999999985  56 49999999999999999999999998877653

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.42  E-value=1.8e-13  Score=111.80  Aligned_cols=60  Identities=25%  Similarity=0.403  Sum_probs=54.4

Q ss_pred             CcchhhHHHHHHHHHHHHHHHccCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 016131          269 SHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV  329 (394)
Q Consensus       269 ~HslaERrRRekIner~~~Lq~LVP~~---~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~  329 (394)
                      .|++.||+||++||++|..|+++||.+   .| .+|++||.+||+||++|+.+.+.|...++.+
T Consensus         9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K-~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L   71 (88)
T 1nkp_A            9 THNVLERQRRNELKRSFFALRDQIPELENNEK-APKVVILKKATAYILSVQAEEQKLISEEDLL   71 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999986   36 4999999999999999999999888776543

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.34  E-value=4.3e-13  Score=107.26  Aligned_cols=56  Identities=29%  Similarity=0.379  Sum_probs=48.3

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHccCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 016131          268 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLS  323 (394)
Q Consensus       268 ~~HslaERrRRekIner~~~Lq~LVP~~---~K~tdKAsIL~eAI~YIK~LQ~qVe~Le  323 (394)
                      ..|+..||+||+.||++|..|+.+||.+   .|...|+.||..||+||++||++|++++
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~   65 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN   65 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4799999999999999999999999953   3432688999999999999999999874

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.27  E-value=7e-12  Score=100.86  Aligned_cols=60  Identities=17%  Similarity=0.229  Sum_probs=54.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHHccCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 016131          269 SHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV  329 (394)
Q Consensus       269 ~HslaERrRRekIner~~~Lq~LVP~~---~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~  329 (394)
                      .|+..||+||..|++.|..|+++||.+   .| ..|++||..||+||+.||.+.+.|..+++.+
T Consensus         4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k-~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L   66 (80)
T 1nlw_A            4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL   66 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999965   45 4799999999999999999999998877654

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.93  E-value=7.8e-10  Score=106.96  Aligned_cols=52  Identities=21%  Similarity=0.470  Sum_probs=41.4

Q ss_pred             ccCCcchhhHHHHHHHHHHHHHHHccCCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 016131          266 ATNSHSLAERVRREKISERMRLLQELVPG-CNKITGKAVMLDEIINYVQSLQQQ  318 (394)
Q Consensus       266 a~~~HslaERrRRekIner~~~Lq~LVP~-~~K~tdKAsIL~eAI~YIK~LQ~q  318 (394)
                      .+..|+++||+||++||+.|..|+.|||. ..|+ ||++||..||+|||.|+..
T Consensus        12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~   64 (361)
T 4f3l_A           12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKET   64 (361)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhh
Confidence            34589999999999999999999999994 4565 9999999999999999864

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=98.88  E-value=1.1e-09  Score=85.80  Aligned_cols=51  Identities=24%  Similarity=0.389  Sum_probs=46.1

Q ss_pred             CcchhhHHHHHHHHHHHHHHHccCCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 016131          269 SHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVE  320 (394)
Q Consensus       269 ~HslaERrRRekIner~~~Lq~LVP~~--~K~tdKAsIL~eAI~YIK~LQ~qVe  320 (394)
                      .|+..||+|+..||+.|..|+.+||..  .| ..|+.||..||+||++||+.++
T Consensus        15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~K-lSKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           15 AATMRERRRLSKVNEAFETLKRSTSSNPNQR-LPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSC-CCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCHHHHHHHHHHHHHHHHHHHc
Confidence            699999999999999999999999964  45 4899999999999999998653

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.83  E-value=2.9e-09  Score=81.51  Aligned_cols=52  Identities=21%  Similarity=0.277  Sum_probs=46.0

Q ss_pred             CcchhhHHHHHHHHHHHHHHHccCCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 016131          269 SHSLAERVRREKISERMRLLQELVPGCN--KITGKAVMLDEIINYVQSLQQQVE  320 (394)
Q Consensus       269 ~HslaERrRRekIner~~~Lq~LVP~~~--K~tdKAsIL~eAI~YIK~LQ~qVe  320 (394)
                      .|+..||+|+..||+.|..|+.+||...  ++..|..+|..||+||+.||+.++
T Consensus         5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            5889999999999999999999999653  334899999999999999998764

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.82  E-value=4.3e-09  Score=85.78  Aligned_cols=64  Identities=27%  Similarity=0.439  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHccCCCCCC---CCChhhHHHHHHHHHHHHHHHHHHHH------HhHhhcCCcccccHHHH
Q 016131          277 RREKISERMRLLQELVPGCNK---ITGKAVMLDEIINYVQSLQQQVEFLS------MKLATVNPELNLDIERI  340 (394)
Q Consensus       277 RRekIner~~~Lq~LVP~~~K---~tdKAsIL~eAI~YIK~LQ~qVe~Le------~~~~~~~p~~~~~~~~~  340 (394)
                      -|..||++|..|..|||.+..   ..+|++||..+|+||++||++++.+.      .+++..|..+.+.+++|
T Consensus         3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqEL   75 (83)
T 4ath_A            3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQEL   75 (83)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            489999999999999998743   14899999999999999998776555      34455666777777766

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.79  E-value=1.7e-09  Score=106.05  Aligned_cols=53  Identities=28%  Similarity=0.423  Sum_probs=47.1

Q ss_pred             CccCCcchhhHHHHHHHHHHHHHHHccCC----CCCCCCChhhHHHHHHHHHHHHHHH
Q 016131          265 QATNSHSLAERVRREKISERMRLLQELVP----GCNKITGKAVMLDEIINYVQSLQQQ  318 (394)
Q Consensus       265 ~a~~~HslaERrRRekIner~~~Lq~LVP----~~~K~tdKAsIL~eAI~YIK~LQ~q  318 (394)
                      +++.+|+.+||+||+|||+.|..|+.|||    ...|+ ||++||..||+|||.|+..
T Consensus        12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred             hhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence            34558999999999999999999999999    45675 9999999999999999843

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.35  E-value=1.7e-07  Score=73.96  Aligned_cols=46  Identities=24%  Similarity=0.437  Sum_probs=40.6

Q ss_pred             chhhHHHHHHHHHHHHHHHccCCCC---CCCCChhhHHHHHHHHHHHHHH
Q 016131          271 SLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQ  317 (394)
Q Consensus       271 slaERrRRekIner~~~Lq~LVP~~---~K~tdKAsIL~eAI~YIK~LQ~  317 (394)
                      +--||+|+..||+.|..||.+||..   .|+ .|..+|.-||+||..||.
T Consensus        19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKL-SKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQL-SQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCC-CHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCc-cHHHHHHHHHHHHHHHHc
Confidence            3558999999999999999999965   454 899999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.65  E-value=8e-05  Score=62.29  Aligned_cols=49  Identities=27%  Similarity=0.358  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHHHHHHHccCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 016131          274 ERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEFL  322 (394)
Q Consensus       274 ERrRRekIner~~~Lq~LVP~~--~K~tdKAsIL~eAI~YIK~LQ~qVe~L  322 (394)
                      ||.|=..||+-|..||.+||..  +++-.|..+|.-||+||+.||..++.-
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~   83 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH   83 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            5778888999999999999964  333489999999999999999888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	394
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	1e-15
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	3e-15
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	6e-15
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	2e-13
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	7e-13
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	6e-12
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	2e-11
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	6e-11

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (169), Expect = 1e-15
 Identities = 17/73 (23%), Positives = 39/73 (53%)

Query: 262 KRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEF 321
            RG+   +H+  E+  R  I++++  L++LV G      K+ +L + I+Y++ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 322 LSMKLATVNPELN 334
           L  +  ++   ++
Sbjct: 62  LKQENLSLRTAVH 74

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (165), Expect = 3e-15
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 278 REKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELN 334
           R  I++++  L++LV G +    K+ +L + I+Y++ LQQ    L  +   +     
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQ 57

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (165), Expect = 6e-15
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 258 HMRAKRGQATNSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSL 315
           HM  KR     +H++ ER RR ++      L++ +P    N+   K V+L +   Y+ S+
Sbjct: 2   HMNVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

Query: 316 QQQVEFLSMKLATVNPELNLDIERI 340
           Q + + L  +   +         ++
Sbjct: 58  QAEEQKLISEEDLLRKRREQLKHKL 82

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.6 bits (152), Expect = 2e-13
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 259 MRAKRGQAT----NSHSLAERVRREKISERMRLLQELVPGC-NKITGKAVMLDEIINYVQ 313
           M  KR         + ++ ER R  K++E    L+       N+   K  +L   I Y++
Sbjct: 1   MELKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIE 60

Query: 314 SLQQQVE 320
            LQ  + 
Sbjct: 61  GLQALLR 67

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (148), Expect = 7e-13
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 269 SHSLAERVRREKISERMRLLQELVPGCNKITG------KAVMLDEIINYVQSLQQQVE 320
           SH  AE+ RR +++  +  L  L+P   K         KA  ++    Y++ LQQ   
Sbjct: 5   SHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 6e-12
 Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 269 SHSLAERVRREKISERMRLLQELVPGC-NKITGKAVMLDEIINYVQSLQQQVEFLSMKLA 327
            H+  ER RR+ I +    L++ VP    +   +A +LD+   Y+Q ++++       + 
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64

Query: 328 TVNPELNLDIERI 340
            +  +  L  +++
Sbjct: 65  DLKRQNALLEQQV 77

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (137), Expect = 2e-11
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 268 NSHSLAERVRREKISERMRLLQELVPGCNKITG-----KAVMLDEIINYVQSLQQQVE 320
             H+  ER RR+KI+  +  L +++P  +  +      K  +L +  +Y+Q L+Q   
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (135), Expect = 6e-11
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 269 SHSLAERVRREKISERMRLLQELVPGCNKI--TGKAVMLDEIINYVQSLQQQVEFLSMKL 326
           +H+  E+ RR  +   +  L+ LVP            +L +   +++ L+        ++
Sbjct: 4   THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63

Query: 327 ATVNPE 332
             +  E
Sbjct: 64  DQLQRE 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	394
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.46
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.41
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.41
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.34

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.9e-16  Score=120.63  Aligned_cols=62  Identities=24%  Similarity=0.392  Sum_probs=57.7

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 016131          268 NSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV  329 (394)
Q Consensus       268 ~~HslaERrRRekIner~~~Lq~LVP~~~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~  329 (394)
                      ..|+.+||+||++||+.|..|++|||++...++|++||..||+||+.|+.+++.|.++.+.+
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~l   69 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL   69 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999987657999999999999999999999999887765

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.3e-14  Score=110.84  Aligned_cols=62  Identities=16%  Similarity=0.221  Sum_probs=56.2

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHccCCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 016131          268 NSHSLAERVRREKISERMRLLQELVPGCN---KITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN  330 (394)
Q Consensus       268 ~~HslaERrRRekIner~~~Lq~LVP~~~---K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~~  330 (394)
                      ..|+.+||+||++||+.|..|++|||.+.   | .+|++||..||+||+.|+.+++.|..+++.+.
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k-~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~   67 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ   67 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999764   4 58999999999999999999999998877654

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=2.1e-14  Score=108.33  Aligned_cols=52  Identities=29%  Similarity=0.469  Sum_probs=46.8

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHccCCCC-------CCCCChhhHHHHHHHHHHHHHHHHH
Q 016131          268 NSHSLAERVRREKISERMRLLQELVPGC-------NKITGKAVMLDEIINYVQSLQQQVE  320 (394)
Q Consensus       268 ~~HslaERrRRekIner~~~Lq~LVP~~-------~K~tdKAsIL~eAI~YIK~LQ~qVe  320 (394)
                      ..|+++||+||++||+.|..|++|||++       .| .+|+.||+.||+||++||++|.
T Consensus         4 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k-~sKa~iL~~Av~yI~~Lq~~v~   62 (63)
T d1a0aa_           4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAA-PSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCC-SCTTHHHHHHHHHHHHHHTCSC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCccc-ccHHHHHHHHHHHHHHHHHhhc
Confidence            4799999999999999999999999953       45 4899999999999999998763

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3e-14  Score=107.06  Aligned_cols=53  Identities=26%  Similarity=0.370  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 016131          278 REKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVN  330 (394)
Q Consensus       278 RekIner~~~Lq~LVP~~~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~~  330 (394)
                      |++||++|..|++|||++.++++|++||.+||+||++||.+++.|+++...+.
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~   53 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLK   53 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999875579999999999999999999999998887653

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=3.9e-14  Score=108.64  Aligned_cols=53  Identities=23%  Similarity=0.347  Sum_probs=47.9

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHccCCCCC-CCCChhhHHHHHHHHHHHHHHHHH
Q 016131          268 NSHSLAERVRREKISERMRLLQELVPGCN-KITGKAVMLDEIINYVQSLQQQVE  320 (394)
Q Consensus       268 ~~HslaERrRRekIner~~~Lq~LVP~~~-K~tdKAsIL~eAI~YIK~LQ~qVe  320 (394)
                      ..|++.||+||++||+.|..|+.|||.+. +..+|++||+.||+||++||++|+
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            36999999999999999999999999874 335999999999999999998775

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.1e-13  Score=109.95  Aligned_cols=63  Identities=24%  Similarity=0.384  Sum_probs=56.6

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHccCCCC---CCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhcCC
Q 016131          268 NSHSLAERVRREKISERMRLLQELVPGC---NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNP  331 (394)
Q Consensus       268 ~~HslaERrRRekIner~~~Lq~LVP~~---~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~~p  331 (394)
                      ..|+.+||+||++||+.|..|++|||++   .| .+|+.||..||+||++|+.+++.|..+++.+..
T Consensus         8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k-~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~   73 (88)
T d1nkpa_           8 RTHNVLERQRRNELKRSFFALRDQIPELENNEK-APKVVILKKATAYILSVQAEEQKLISEEDLLRK   73 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999975   34 489999999999999999999999988876543

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-13  Score=108.59  Aligned_cols=61  Identities=25%  Similarity=0.458  Sum_probs=55.3

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHccCCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 016131          268 NSHSLAERVRREKISERMRLLQELVPGC--NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATV  329 (394)
Q Consensus       268 ~~HslaERrRRekIner~~~Lq~LVP~~--~K~tdKAsIL~eAI~YIK~LQ~qVe~Le~~~~~~  329 (394)
                      ..|+.+||+||++||+.|..|++|||++  .+ .+|++||..||+||+.|+.+++.|...++.+
T Consensus         4 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k-~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l   66 (83)
T d1nkpb_           4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDL   66 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3799999999999999999999999975  44 5999999999999999999999999877654

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.6e-13  Score=103.97  Aligned_cols=51  Identities=29%  Similarity=0.500  Sum_probs=46.2

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHccCCCCC------CCCChhhHHHHHHHHHHHHHHHH
Q 016131          268 NSHSLAERVRREKISERMRLLQELVPGCN------KITGKAVMLDEIINYVQSLQQQV  319 (394)
Q Consensus       268 ~~HslaERrRRekIner~~~Lq~LVP~~~------K~tdKAsIL~eAI~YIK~LQ~qV  319 (394)
                      ..|+.+||+||++||+.|..|++|||.+.      + .+|+.||..||+||+.||++.
T Consensus         7 ~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k-~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSG-QSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTC-CCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCC-CCHHHHHHHHHHHHHHHHHhh
Confidence            47999999999999999999999999764      5 489999999999999999753