Citrus Sinensis ID: 016159

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
Protein Sequence
MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALDCFGFHSNYFCLFRLVR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccHHHHHHccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccEEEEEEEEEccccccccccccccccEEEccHHHHHHHHHHHHcccccccccccccEEEcEEEEEcccccccEEEEEEEEEcccccEEEEEEcccccHHHHHHHHccccEEEEEccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccEEcccEEEcccccEEEEEEEcccccccccccHHHHHccccccccHHHHHHHHccccEEEccccEEEEEcHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcHcHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHccccccEEEEEccccccccccEEccccEccEEEEccHHHHHHHHcccccEEEccccccccEEcccEEEEEcccccEEEEEEEEEEHHHcEEEEEEEccccccHHHHHHHcHHHcEEEEcEcccEccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEEEcccEEEEccEEEEEcHHHHHHcHHHHHccccccccHHHHHHHHcccEEEEccccEEEEEccHHHHHHHHHHHHHccccEcEEEEccccccHHHHHHHHHHccccccccEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEEcEEEEEEc
Coil and Loop (DISEMBL)
MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYginvpkglavASVDEVKKAIQDAFPDHKELVVKSQIlaggrglgtfksglkggvhivKKEEVEDLAGKMLGQILVtkqtgpqgkivSKVYLCEKLSLVNEMYFAIMLDrktagpiiigcskggtsiedLAEKYPNMIVKVPidvfngitdedaakvvdglapkvadrnDAIEQVKKLYKLFCesdctlleinplaetsgKQLVAADaklnfddnAAFRQKEIfalrdptqedprEVAAAKADLnyigldgeigcmvngagLAMATMDIIKlhggtpanfldvggnasegQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQvsaldcfgfhsnyfcLFRLVR
Flexible Loop (DISEMBL)
mvrgllnklvsrsltvagqwqqqqLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQdafpdhkelVVKSQILaggrglgtfksglkggvHIVKKEEVEDLAGKMLGQILVtkqtgpqgkivSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIfalrdptqedprEVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALDCFGFHSNYFCLFRLVR
Low Complexity Region (SEG)
MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALDCFGFHSNYFCLFRLVR
Disordered region (IsUnstruct)
*****LNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFAL**********VAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALDCFGFHSNYFCLFRLV*
Disordered Region (DISOPRED)
************************LRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALDCFGFHSNYFCLFRLVR
Disordered Region (DISEMBL)
MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRD********VAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALDCFGFHSNYFCLFRLVR
Disordered Region (DISPRO)
*VRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALDCFGFHSNYFCLFRLVR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALDCFGFHSNYFCLFRLVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	394	2.2.26 [Sep-21-2011]
O82662	421	Succinyl-CoA ligase [ADP-	yes	no	0.949	0.888	0.860	0.0
Q6K9N6	422	Succinyl-CoA ligase [ADP-	yes	no	0.949	0.886	0.863	0.0
Q84LB6	417	Succinyl-CoA ligase [ADP-	N/A	no	0.939	0.887	0.859	0.0
Q55AI5	445	Succinyl-CoA ligase [ADP-	yes	no	0.888	0.786	0.563	1e-110
Q869S7	420	Succinyl-CoA ligase [GDP-	no	no	0.883	0.828	0.572	1e-106
Q148D5	463	Succinyl-CoA ligase [ADP-	yes	no	0.893	0.760	0.552	1e-104
Q9YI37	413	Succinyl-CoA ligase [ADP-	N/A	no	0.880	0.840	0.542	1e-103
O97580	425	Succinyl-CoA ligase [ADP-	yes	no	0.875	0.811	0.553	1e-103
Q9Z2I9	463	Succinyl-CoA ligase [ADP-	yes	no	0.875	0.745	0.551	1e-103
Q9P2R7	463	Succinyl-CoA ligase [ADP-	yes	no	0.875	0.745	0.553	1e-102

>sp|O82662|SUCB_ARATH Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Arabidopsis thaliana GN=At2g20420 PE=1 SV=1

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/374 (86%), Positives = 357/374 (95%)

Query: 2   VRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKA 61
           +RGL+NKLVSRSL+++G+WQ QQLRRLNIHEYQGAELM KYG+NVPKG+A +S++EVKKA
Sbjct: 1   MRGLVNKLVSRSLSISGKWQNQQLRRLNIHEYQGAELMGKYGVNVPKGVAASSLEEVKKA 60

Query: 62  IQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQT 121
           IQD FP+  ELVVKSQILAGGRGLGTFKSGLKGGVHIVK++E E++AGKMLGQ+LVTKQT
Sbjct: 61  IQDVFPNESELVVKSQILAGGRGLGTFKSGLKGGVHIVKRDEAEEIAGKMLGQVLVTKQT 120

Query: 122 GPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVK 181
           GPQGK+VSKVYLCEKLSLVNEMYF+I+LDRK+AGP+II C KGGTSIEDLAEK+P+MI+K
Sbjct: 121 GPQGKVVSKVYLCEKLSLVNEMYFSIILDRKSAGPLIIACKKGGTSIEDLAEKFPDMIIK 180

Query: 182 VPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG 241
           VPIDVF GITDEDAAKVVDGLAPK ADR D+IEQVKKLY+LF ++DCT+LEINPLAETS 
Sbjct: 181 VPIDVFAGITDEDAAKVVDGLAPKAADRKDSIEQVKKLYELFRKTDCTMLEINPLAETST 240

Query: 242 KQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGA 301
            QLVAADAKLNFDDNAAFRQKE+FA+RDPTQEDPREVAAAK DLNYIGLDGEIGCMVNGA
Sbjct: 241 NQLVAADAKLNFDDNAAFRQKEVFAMRDPTQEDPREVAAAKVDLNYIGLDGEIGCMVNGA 300

Query: 302 GLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCD 361
           GLAMATMDIIKLHGGTPANFLDVGGNASE QVVEAFKILTSD+KVKAILVNIFGGIMKCD
Sbjct: 301 GLAMATMDIIKLHGGTPANFLDVGGNASEHQVVEAFKILTSDDKVKAILVNIFGGIMKCD 360

Query: 362 VIASGIVNAAKQVS 375
           VIASGIVNAAK+V+
Sbjct: 361 VIASGIVNAAKEVA 374

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 5

>sp|Q6K9N6|SUCB_ORYSJ Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0621700 PE=1 SV=1

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/374 (86%), Positives = 347/374 (92%)

Query: 1   MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKK 60
           MVRG L KL SR+L+VAG+WQ QQLRRLNIHEYQGAELM KYGINVP+G A  SV+EVK 
Sbjct: 1   MVRGSLGKLASRALSVAGKWQHQQLRRLNIHEYQGAELMGKYGINVPRGAAAGSVEEVKN 60

Query: 61  AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQ 120
            +++ FP  KE+VVKSQILAGGRGLGTFKSGL+GGVHIVK EE E LA KMLGQILVTKQ
Sbjct: 61  TLKNVFPSEKEIVVKSQILAGGRGLGTFKSGLQGGVHIVKAEEAESLAAKMLGQILVTKQ 120

Query: 121 TGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIV 180
           TGPQGKIVSKVYLCEKLSLVNEMYFAI LDR TAGP+II CSKGGTSIEDLAEKYP+MI+
Sbjct: 121 TGPQGKIVSKVYLCEKLSLVNEMYFAITLDRNTAGPLIIACSKGGTSIEDLAEKYPDMII 180

Query: 181 KVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETS 240
           KVPIDVF GITD+DAAKVVDGLAPK ADR  +IEQ+KKLY+LFC+SDCTLLEINPLAET+
Sbjct: 181 KVPIDVFKGITDDDAAKVVDGLAPKTADRQSSIEQIKKLYELFCKSDCTLLEINPLAETA 240

Query: 241 GKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNG 300
             +LVAADAKLNFDDNAAFRQKEIFA+RD TQEDPREVAAAKADLNYIGLDGEIGCMVNG
Sbjct: 241 DNKLVAADAKLNFDDNAAFRQKEIFAMRDTTQEDPREVAAAKADLNYIGLDGEIGCMVNG 300

Query: 301 AGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKC 360
           AGLAMATMDIIKLHGGTPANFLDVGG+ASEGQVVEAFKILTSD++VKAILVNIFGGIMKC
Sbjct: 301 AGLAMATMDIIKLHGGTPANFLDVGGSASEGQVVEAFKILTSDDRVKAILVNIFGGIMKC 360

Query: 361 DVIASGIVNAAKQV 374
           DVIASGIVNAAKQV
Sbjct: 361 DVIASGIVNAAKQV 374

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q84LB6|SUCB_SOLLC Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Solanum lycopersicum PE=1 SV=1

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/370 (85%), Positives = 352/370 (95%)

Query: 5   LLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD 64
           +L KL ++SL+VAG+WQQQQLRRLNIHEYQGAELM+KYGINVPKG+AVAS+DEVKKAIQD
Sbjct: 1   MLRKLANQSLSVAGKWQQQQLRRLNIHEYQGAELMSKYGINVPKGVAVASLDEVKKAIQD 60

Query: 65  AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQ 124
            FP+  E+VVKSQ+LAGGRGLGTFK+G +GGVHIVK ++ ED+A KMLGQILVTKQTG Q
Sbjct: 61  VFPNQSEVVVKSQVLAGGRGLGTFKNGFQGGVHIVKADQAEDIASKMLGQILVTKQTGAQ 120

Query: 125 GKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 184
           GK+VSKVYLCEK+SLVNEMYF+I+LDR TAGP+II C KGGTSIEDLAEK+P+MI+KVPI
Sbjct: 121 GKVVSKVYLCEKMSLVNEMYFSIILDRATAGPLIIACRKGGTSIEDLAEKFPDMIIKVPI 180

Query: 185 DVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQL 244
           DVF GI+D DAAKVVDGLAPKVADRND+IEQVKKLYKLFCE+DCT+LEINPLAETS  +L
Sbjct: 181 DVFKGISDADAAKVVDGLAPKVADRNDSIEQVKKLYKLFCETDCTMLEINPLAETSDNKL 240

Query: 245 VAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLA 304
           VAADAKLNFDDNAA+RQKEIF+LRD +QEDPREVAAAKADLNYIGLDGEIGCMVNGAGLA
Sbjct: 241 VAADAKLNFDDNAAYRQKEIFSLRDSSQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLA 300

Query: 305 MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364
           MATMDIIKLHGGTPANFLDVGGNA+EGQVVEAFKILT+DEKVKAILVNIFGGIMKCDVIA
Sbjct: 301 MATMDIIKLHGGTPANFLDVGGNATEGQVVEAFKILTADEKVKAILVNIFGGIMKCDVIA 360

Query: 365 SGIVNAAKQV 374
           SGIVNAAKQV
Sbjct: 361 SGIVNAAKQV 370

Solanum lycopersicum (taxid: 4081)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q55AI5|SUCB1_DICDI Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsC PE=3 SV=1

 Score =  398 bits (1022), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/353 (56%), Positives = 258/353 (73%), Gaps = 3/353 (0%)

Query: 24  QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGR 83
           Q R LN+HEYQ  ++M  YGIN P G    + +E +K  +    + ++LVVK+Q+LAGGR
Sbjct: 31  QKRFLNVHEYQAQKMMKSYGINCPVGNVAETPEEAEKIAE--VMNTQDLVVKAQVLAGGR 88

Query: 84  GLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNE 142
           G G F SGLKGGV +    E+V+  A KMLG  LVTKQTG  GK+V +VY+ E+  L  E
Sbjct: 89  GKGIFTSGLKGGVQLCSSAEDVKKFASKMLGHTLVTKQTGEDGKVVHQVYVTERHFLRKE 148

Query: 143 MYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 202
           MYFAI++DRK  GP+++   +GG  IE +A   P+ I K PID+  G+  E   ++ + L
Sbjct: 149 MYFAILMDRKAGGPVMVASPEGGVDIEGVARDNPSAIFKEPIDIMIGVQPEQTKRLAEKL 208

Query: 203 APKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 262
                + + A +Q+KKLY  F ++DCTL+EINPLAET+   ++  DAKLNFDDNAAFR  
Sbjct: 209 GFSKKNISMAQDQMKKLYDFFIKNDCTLVEINPLAETASGDVLCMDAKLNFDDNAAFRHP 268

Query: 263 EIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFL 322
           +IF LRD +QEDPREV AA+ DLNYIGLDG IGC+VNGAGLAMA+MDIIKL+GG+PANFL
Sbjct: 269 DIFKLRDKSQEDPREVKAAEFDLNYIGLDGNIGCLVNGAGLAMASMDIIKLYGGSPANFL 328

Query: 323 DVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVS 375
           DVGG A++ QV EA K+++SD+KVK+ILVNIFGGIMKCDVIA GI+ A K++S
Sbjct: 329 DVGGGATQKQVTEAIKLISSDKKVKSILVNIFGGIMKCDVIALGIIAALKELS 381

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q869S7|SUCB2_DICDI Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsB PE=3 SV=1

 Score =  386 bits (992), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/353 (57%), Positives = 250/353 (70%), Gaps = 5/353 (1%)

Query: 24  QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGR 83
           Q+R LN+HEYQ   LM KYG+N  K   V    +   AI+ A   + ELVVK+Q+ AGGR
Sbjct: 23  QVRYLNLHEYQSKSLMDKYGVNTQKWRVVTKASD---AIKAASELNGELVVKAQVHAGGR 79

Query: 84  GLGTF-KSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN 141
           G G+F ++G KGGVH+ K  +E E L  +MLG+ LVTKQT  +G  V  V L E +    
Sbjct: 80  GKGSFIETGFKGGVHLCKTGKEAERLCDEMLGKHLVTKQTTKEGTKVQSVMLAESVDPKR 139

Query: 142 EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDG 201
           E+YFAI++DRK  GP++I   +GG  IE +AE+ P++I K PID+  GI  E    + + 
Sbjct: 140 ELYFAIVMDRKYGGPVMIASPQGGVDIESVAEETPDLIFKEPIDIVKGIRPEQTKNLAEK 199

Query: 202 LAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 261
           L         A +Q++ LY+LF +SD T +EINP AET+  Q++  DAK+NFDDNA+FRQ
Sbjct: 200 LGFTGEKAKIAQQQMENLYQLFIKSDATQVEINPFAETTDGQVICMDAKINFDDNASFRQ 259

Query: 262 KEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANF 321
           KEIF +RD  +EDPREV A K  LNYIGLDG IGCMVNGAGLAMATMDIIKL GG PANF
Sbjct: 260 KEIFEMRDTAEEDPREVEAGKFGLNYIGLDGNIGCMVNGAGLAMATMDIIKLKGGIPANF 319

Query: 322 LDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
           LDVGG+ASE  V EAFKILT D +VK +LVNIFGGIMKCD+IASGIVNA+KQV
Sbjct: 320 LDVGGSASEQAVTEAFKILTKDPRVKCLLVNIFGGIMKCDIIASGIVNASKQV 372

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 4

>sp|Q148D5|SUCB1_BOVIN Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Bos taurus GN=SUCLA2 PE=2 SV=1

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/355 (55%), Positives = 254/355 (71%), Gaps = 3/355 (0%)

Query: 19  QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQI 78
           Q Q QQ R L++HEY   EL+ + G+++PKG    S DE   AI       K++V+K+Q+
Sbjct: 44  QIQHQQQRNLSLHEYLSMELLQEAGVSIPKGHVAKSPDEAY-AIAKKL-GSKDVVIKAQV 101

Query: 79  LAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL 137
           LAGGRG GTF+SGLKGGV IV   EE + ++ +M+G+ L TKQTG +G+I ++V +CE+ 
Sbjct: 102 LAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERR 161

Query: 138 SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAK 197
               E YFAI ++R   GP++IG S GG +IED+A + P  IVK PID+  GI  E A +
Sbjct: 162 YPRREYYFAITMERSFQGPVLIGSSHGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVR 221

Query: 198 VVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNA 257
           +   +    +  + A E + KLY  F + D T++EINP+ E S   ++  DAK+NFD N+
Sbjct: 222 LAQKMGFPASIVDSAAENMIKLYDPFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNS 281

Query: 258 AFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGT 317
           A+RQK+IF L+D TQED R+  AAKADLNYIGLDG IGC+VNGAGLAMATMDIIKLHGGT
Sbjct: 282 AYRQKKIFDLQDWTQEDERDKDAAKADLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGT 341

Query: 318 PANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAK 372
           PANFLDVGG A+  QV EAFK++TSD+KV +ILVNIFGGIM+CDVIA GIV A K
Sbjct: 342 PANFLDVGGGATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVK 396

Catalyzes the ATP-dependent ligation of succinate and CoA to form succinyl-CoA.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q9YI37|SUCB1_COLLI Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (Fragment) OS=Columba livia GN=SUCLA2 PE=1 SV=1

 Score =  375 bits (962), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/350 (54%), Positives = 255/350 (72%), Gaps = 3/350 (0%)

Query: 26  RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGL 85
           RRL++HEY    L+ + GI+VP G+   + DE  K  ++     K+LV+K+Q+LAGGRG 
Sbjct: 1   RRLSLHEYLSMGLLQEAGISVPHGVVARTPDEAYKIAKEI--GSKDLVIKAQVLAGGRGK 58

Query: 86  GTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144
           GTF+ GLKGGV IV   EE + ++ +M+G+ L TKQTG +G+I ++V++CE+     E Y
Sbjct: 59  GTFEGGLKGGVKIVFSPEEAKAVSSRMIGKKLFTKQTGEKGRICNQVFVCERRYPRREYY 118

Query: 145 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAP 204
           FAI ++R   GP++IG S+GG +IED+A + P+ I+K PID+  GI  E A ++   +  
Sbjct: 119 FAITMERSFQGPVLIGSSQGGVNIEDVAAENPDAIIKEPIDIVEGIKKEQAVRLAQKMGF 178

Query: 205 KVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEI 264
                ++A E + KLY LF + D T++EINP+ E +   ++  DAK+NFD N+A+RQK+I
Sbjct: 179 PSNLVDEAAENMIKLYNLFLKYDATMIEINPMVEDASGVVMCMDAKINFDSNSAYRQKKI 238

Query: 265 FALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDV 324
           F ++D TQED R+  AAKADLNYIGLDG IGC+VNGAGLAMATMDIIKLHGGTPANFLDV
Sbjct: 239 FDMQDWTQEDERDRQAAKADLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDV 298

Query: 325 GGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
           GG A+  QV EAFK++TSD+KV AILVNIFGGIM+CDVIA GIV A K +
Sbjct: 299 GGGATVHQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVVAVKDL 348

Catalyzes the ATP-dependent ligation of succinate and CoA to form succinyl-CoA.

Columba livia (taxid: 8932)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (Fragment) OS=Sus scrofa GN=SUCLA2 PE=2 SV=1

 Score =  374 bits (960), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/352 (55%), Positives = 254/352 (72%), Gaps = 7/352 (1%)

Query: 26  RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGL 85
           R L++HEY   EL+ + G+++PKG    S DE   AI       K++V+K+Q+LAGGRG 
Sbjct: 13  RNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAY-AIAKKL-GSKDVVIKAQVLAGGRGK 70

Query: 86  GTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144
           GTF+SGLKGGV IV   EE + ++ +M+G+ L TKQTG +G+I ++V +CE+     E Y
Sbjct: 71  GTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERRYPRREYY 130

Query: 145 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GL 202
           FAI ++R   GP++IG S+GG +IED+A + P  IVK PID+  GI  E A ++    G 
Sbjct: 131 FAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGF 190

Query: 203 APKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 262
            P + D   A E + KLY LF + D T++EINP+ E S   ++  DAK+NFD N+A+RQK
Sbjct: 191 PPSIVD--SAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDSNSAYRQK 248

Query: 263 EIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFL 322
           +IF L+D TQED R+  AAKA+LNYIGLDG IGC+VNGAGLAMATMDIIKLHGGTPANFL
Sbjct: 249 KIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFL 308

Query: 323 DVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
           DVGG A+  QV EAFK++TSD+KV +ILVNIFGGIM+CDVIA GIV A K +
Sbjct: 309 DVGGGATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDL 360

Catalyzes the ATP-dependent ligation of succinate and CoA to form succinyl-CoA.

Sus scrofa (taxid: 9823)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Mus musculus GN=Sucla2 PE=1 SV=2

 Score =  374 bits (960), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/348 (55%), Positives = 251/348 (72%), Gaps = 3/348 (0%)

Query: 26  RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGL 85
           R L++HEY   EL+ + G++VPKG    S DE   AI       K++V+K+Q+LAGGRG 
Sbjct: 51  RTLSLHEYLSMELLQEAGVSVPKGFVAKSSDEAY-AIAKKL-GSKDVVIKAQVLAGGRGK 108

Query: 86  GTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144
           GTF SGLKGGV IV   EE + ++ +M+GQ L+TKQTG +G+I ++V +CE+     E Y
Sbjct: 109 GTFTSGLKGGVKIVFSPEEAKAVSSQMIGQKLITKQTGEKGRICNQVLVCERKYPRREYY 168

Query: 145 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAP 204
           FAI ++R   GP++IG ++GG +IED+A + P  IVK PID+  GI  E A  +   +  
Sbjct: 169 FAITMERSFQGPVLIGSAQGGVNIEDVAAENPEAIVKEPIDIVEGIKKEQAVTLAQKMGF 228

Query: 205 KVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEI 264
                + A E + KLY LF + D T++EINP+ E S  +++  DAK+NFD N+A+RQK+I
Sbjct: 229 PSNIVDSAAENMIKLYNLFLKYDATMVEINPMVEDSDGKVLCMDAKINFDSNSAYRQKKI 288

Query: 265 FALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDV 324
           F L+D +QED R+  AA AD+NYIGLDG IGC+VNGAGLAMATMDIIKLHGGTPANFLDV
Sbjct: 289 FDLQDWSQEDERDKEAANADINYIGLDGSIGCLVNGAGLAMATMDIIKLHGGTPANFLDV 348

Query: 325 GGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAK 372
           GG A+  QV EAFK++TSD+KV+AILVNIFGGIM+CDVIA GIV A K
Sbjct: 349 GGGATVQQVTEAFKLITSDKKVQAILVNIFGGIMRCDVIAQGIVMAVK 396

Catalyzes the ATP-dependent ligation of succinate and CoA to form succinyl-CoA.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

>sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLA2 PE=1 SV=3

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/352 (55%), Positives = 253/352 (71%), Gaps = 7/352 (1%)

Query: 26  RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGL 85
           R L++HEY   EL+ + G++VPKG    S DE   AI       K++V+K+Q+LAGGRG 
Sbjct: 51  RNLSLHEYMSMELLQEAGVSVPKGYVAKSPDEAY-AIAKKL-GSKDVVIKAQVLAGGRGK 108

Query: 86  GTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144
           GTF+SGLKGGV IV   EE + ++ +M+G+ L TKQTG +G+I ++V +CE+     E Y
Sbjct: 109 GTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERKYPRREYY 168

Query: 145 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GL 202
           FAI ++R   GP++IG S GG +IED+A + P  I+K PID+  GI  E A ++    G 
Sbjct: 169 FAITMERSFQGPVLIGSSHGGVNIEDVAAESPEAIIKEPIDIEEGIKKEQALQLAQKMGF 228

Query: 203 APKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 262
            P + +   A E + KLY LF + D T++EINP+ E S   ++  DAK+NFD N+A+RQK
Sbjct: 229 PPNIVE--SAAENMVKLYSLFLKYDATMIEINPMVEDSDGAVLCMDAKINFDSNSAYRQK 286

Query: 263 EIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFL 322
           +IF L+D TQED R+  AAKA+LNYIGLDG IGC+VNGAGLAMATMDIIKLHGGTPANFL
Sbjct: 287 KIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFL 346

Query: 323 DVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
           DVGG A+  QV EAFK++TSD+KV AILVNIFGGIM+CDVIA GIV A K +
Sbjct: 347 DVGGGATVHQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDL 398

Catalyzes the ATP-dependent ligation of succinate and CoA to form succinyl-CoA.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	394
TAIR|locus:2039037	421	AT2G20420 [Arabidopsis thalian	0.949	0.888	0.860	3.3e-173
UNIPROTKB|Q84LB6	417	Q84LB6 "Succinyl-CoA ligase [A	0.939	0.887	0.859	1.9e-170
DICTYBASE|DDB_G0271842	445	scsC "succinate-CoA ligase (AD	0.888	0.786	0.566	1.8e-101
UNIPROTKB|Q5F3B9	463	SUCLA2 "Uncharacterized protei	0.893	0.760	0.559	1.7e-100
DICTYBASE|DDB_G0274449	420	scsB "succinate-CoA ligase (GD	0.883	0.828	0.569	1e-98
UNIPROTKB|F1RK10	463	SUCLA2 "Succinyl-CoA ligase [A	0.893	0.760	0.557	1e-98
UNIPROTKB|O97580	425	SUCLA2 "Succinyl-CoA ligase [A	0.893	0.828	0.557	1e-98
ZFIN|ZDB-GENE-040426-1963	466	sucla2 "succinate-CoA ligase,	0.878	0.742	0.555	1.3e-98
UNIPROTKB|Q9P2R7	463	SUCLA2 "Succinyl-CoA ligase [A	0.893	0.760	0.557	2.2e-98
MGI|MGI:1306775	463	Sucla2 "succinate-Coenzyme A l	0.893	0.760	0.554	2.8e-98

TAIR|locus:2039037 AT2G20420 [Arabidopsis thaliana (taxid:3702)]

 Score = 1683 (597.5 bits), Expect = 3.3e-173, P = 3.3e-173
 Identities = 322/374 (86%), Positives = 357/374 (95%)

Query:     2 VRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKA 61
             +RGL+NKLVSRSL+++G+WQ QQLRRLNIHEYQGAELM KYG+NVPKG+A +S++EVKKA
Sbjct:     1 MRGLVNKLVSRSLSISGKWQNQQLRRLNIHEYQGAELMGKYGVNVPKGVAASSLEEVKKA 60

Query:    62 IQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQT 121
             IQD FP+  ELVVKSQILAGGRGLGTFKSGLKGGVHIVK++E E++AGKMLGQ+LVTKQT
Sbjct:    61 IQDVFPNESELVVKSQILAGGRGLGTFKSGLKGGVHIVKRDEAEEIAGKMLGQVLVTKQT 120

Query:   122 GPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVK 181
             GPQGK+VSKVYLCEKLSLVNEMYF+I+LDRK+AGP+II C KGGTSIEDLAEK+P+MI+K
Sbjct:   121 GPQGKVVSKVYLCEKLSLVNEMYFSIILDRKSAGPLIIACKKGGTSIEDLAEKFPDMIIK 180

Query:   182 VPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG 241
             VPIDVF GITDEDAAKVVDGLAPK ADR D+IEQVKKLY+LF ++DCT+LEINPLAETS 
Sbjct:   181 VPIDVFAGITDEDAAKVVDGLAPKAADRKDSIEQVKKLYELFRKTDCTMLEINPLAETST 240

Query:   242 KQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGA 301
              QLVAADAKLNFDDNAAFRQKE+FA+RDPTQEDPREVAAAK DLNYIGLDGEIGCMVNGA
Sbjct:   241 NQLVAADAKLNFDDNAAFRQKEVFAMRDPTQEDPREVAAAKVDLNYIGLDGEIGCMVNGA 300

Query:   302 GLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCD 361
             GLAMATMDIIKLHGGTPANFLDVGGNASE QVVEAFKILTSD+KVKAILVNIFGGIMKCD
Sbjct:   301 GLAMATMDIIKLHGGTPANFLDVGGNASEHQVVEAFKILTSDDKVKAILVNIFGGIMKCD 360

Query:   362 VIASGIVNAAKQVS 375
             VIASGIVNAAK+V+
Sbjct:   361 VIASGIVNAAKEVA 374

GO:0003824 "catalytic activity" evidence=IEA

GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB|Q84LB6 Q84LB6 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Solanum lycopersicum (taxid:4081)]

 Score = 1657 (588.4 bits), Expect = 1.9e-170, P = 1.9e-170
 Identities = 318/370 (85%), Positives = 352/370 (95%)

Query:     5 LLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD 64
             +L KL ++SL+VAG+WQQQQLRRLNIHEYQGAELM+KYGINVPKG+AVAS+DEVKKAIQD
Sbjct:     1 MLRKLANQSLSVAGKWQQQQLRRLNIHEYQGAELMSKYGINVPKGVAVASLDEVKKAIQD 60

Query:    65 AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQ 124
              FP+  E+VVKSQ+LAGGRGLGTFK+G +GGVHIVK ++ ED+A KMLGQILVTKQTG Q
Sbjct:    61 VFPNQSEVVVKSQVLAGGRGLGTFKNGFQGGVHIVKADQAEDIASKMLGQILVTKQTGAQ 120

Query:   125 GKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI 184
             GK+VSKVYLCEK+SLVNEMYF+I+LDR TAGP+II C KGGTSIEDLAEK+P+MI+KVPI
Sbjct:   121 GKVVSKVYLCEKMSLVNEMYFSIILDRATAGPLIIACRKGGTSIEDLAEKFPDMIIKVPI 180

Query:   185 DVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQL 244
             DVF GI+D DAAKVVDGLAPKVADRND+IEQVKKLYKLFCE+DCT+LEINPLAETS  +L
Sbjct:   181 DVFKGISDADAAKVVDGLAPKVADRNDSIEQVKKLYKLFCETDCTMLEINPLAETSDNKL 240

Query:   245 VAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLA 304
             VAADAKLNFDDNAA+RQKEIF+LRD +QEDPREVAAAKADLNYIGLDGEIGCMVNGAGLA
Sbjct:   241 VAADAKLNFDDNAAYRQKEIFSLRDSSQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLA 300

Query:   305 MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIA 364
             MATMDIIKLHGGTPANFLDVGGNA+EGQVVEAFKILT+DEKVKAILVNIFGGIMKCDVIA
Sbjct:   301 MATMDIIKLHGGTPANFLDVGGNATEGQVVEAFKILTADEKVKAILVNIFGGIMKCDVIA 360

Query:   365 SGIVNAAKQV 374
             SGIVNAAKQV
Sbjct:   361 SGIVNAAKQV 370

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IDA

GO:0006104 "succinyl-CoA metabolic process" evidence=IDA

GO:0006105 "succinate metabolic process" evidence=IDA

DICTYBASE|DDB_G0271842 scsC "succinate-CoA ligase (ADP-forming)" [Dictyostelium discoideum (taxid:44689)]

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 200/353 (56%), Positives = 259/353 (73%)

Query:    24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGR 83
             Q R LN+HEYQ  ++M  YGIN P G    + +E +K I +   + ++LVVK+Q+LAGGR
Sbjct:    31 QKRFLNVHEYQAQKMMKSYGINCPVGNVAETPEEAEK-IAEVM-NTQDLVVKAQVLAGGR 88

Query:    84 GLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNE 142
             G G F SGLKGGV +    E+V+  A KMLG  LVTKQTG  GK+V +VY+ E+  L  E
Sbjct:    89 GKGIFTSGLKGGVQLCSSAEDVKKFASKMLGHTLVTKQTGEDGKVVHQVYVTERHFLRKE 148

Query:   143 MYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGL 202
             MYFAI++DRK  GP+++   +GG  IE +A   P+ I K PID+  G+  E   ++ + L
Sbjct:   149 MYFAILMDRKAGGPVMVASPEGGVDIEGVARDNPSAIFKEPIDIMIGVQPEQTKRLAEKL 208

Query:   203 APKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 262
                  + + A +Q+KKLY  F ++DCTL+EINPLAET+   ++  DAKLNFDDNAAFR  
Sbjct:   209 GFSKKNISMAQDQMKKLYDFFIKNDCTLVEINPLAETASGDVLCMDAKLNFDDNAAFRHP 268

Query:   263 EIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFL 322
             +IF LRD +QEDPREV AA+ DLNYIGLDG IGC+VNGAGLAMA+MDIIKL+GG+PANFL
Sbjct:   269 DIFKLRDKSQEDPREVKAAEFDLNYIGLDGNIGCLVNGAGLAMASMDIIKLYGGSPANFL 328

Query:   323 DVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVS 375
             DVGG A++ QV EA K+++SD+KVK+ILVNIFGGIMKCDVIA GI+ A K++S
Sbjct:   329 DVGGGATQKQVTEAIKLISSDKKVKSILVNIFGGIMKCDVIALGIIAALKELS 381

GO:0046872 "metal ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA;ISS

GO:0006104 "succinyl-CoA metabolic process" evidence=IC

GO:0006099 "tricarboxylic acid cycle" evidence=IEA;IC

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q5F3B9 SUCLA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 997 (356.0 bits), Expect = 1.7e-100, P = 1.7e-100
 Identities = 201/359 (55%), Positives = 262/359 (72%)

Query:    19 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQI 78
             Q QQQQ R L++HEY    L+ + GI+VP GL   S +E  K  ++     K+LVVK+Q+
Sbjct:    44 QVQQQQQRNLSLHEYLSMGLLQEAGISVPHGLVAKSPEEAYKIAKEI--GTKDLVVKAQV 101

Query:    79 LAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL 137
             LAGGRG GTF+ GLKGGV IV   EE +D++ KM+G+ L TKQTG +G+I ++V++CE+ 
Sbjct:   102 LAGGRGKGTFEGGLKGGVKIVFSPEEAKDISSKMIGKKLFTKQTGEKGRICNQVFICERR 161

Query:   138 SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAK 197
                 E YFAI ++R   GP++IG S+GG +IED+A + P+ I+K PID+  GI  E A +
Sbjct:   162 YPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAENPDAIIKEPIDIVEGIKKEQAVR 221

Query:   198 VVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDD 255
             +    G  P + D  +A E + KLY LF + D T++EINP+ E +   ++  DAK+NFD 
Sbjct:   222 LAQKMGFPPNLVD--EAAENMIKLYNLFLKYDATMIEINPMVEDASGVVMCMDAKINFDS 279

Query:   256 NAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHG 315
             N+A+RQK+IF ++D TQED R+  AAKADLNYIGLDG IGC+VNGAGLAMATMDIIKLHG
Sbjct:   280 NSAYRQKKIFDMQDWTQEDERDRDAAKADLNYIGLDGNIGCLVNGAGLAMATMDIIKLHG 339

Query:   316 GTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
             GTPANFLDVGG A+  QV EAFK++TSD+KV AILVNIFGGIM+CDVIA GIV A K +
Sbjct:   340 GTPANFLDVGGGATVQQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDL 398

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

DICTYBASE|DDB_G0274449 scsB "succinate-CoA ligase (GDP-forming) beta subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
 Identities = 201/353 (56%), Positives = 249/353 (70%)

Query:    24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGR 83
             Q+R LN+HEYQ   LM KYG+N  K   V    +  KA  +    + ELVVK+Q+ AGGR
Sbjct:    23 QVRYLNLHEYQSKSLMDKYGVNTQKWRVVTKASDAIKAASEL---NGELVVKAQVHAGGR 79

Query:    84 GLGTF-KSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN 141
             G G+F ++G KGGVH+ K  +E E L  +MLG+ LVTKQT  +G  V  V L E +    
Sbjct:    80 GKGSFIETGFKGGVHLCKTGKEAERLCDEMLGKHLVTKQTTKEGTKVQSVMLAESVDPKR 139

Query:   142 EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDG 201
             E+YFAI++DRK  GP++I   +GG  IE +AE+ P++I K PID+  GI  E    + + 
Sbjct:   140 ELYFAIVMDRKYGGPVMIASPQGGVDIESVAEETPDLIFKEPIDIVKGIRPEQTKNLAEK 199

Query:   202 LAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 261
             L         A +Q++ LY+LF +SD T +EINP AET+  Q++  DAK+NFDDNA+FRQ
Sbjct:   200 LGFTGEKAKIAQQQMENLYQLFIKSDATQVEINPFAETTDGQVICMDAKINFDDNASFRQ 259

Query:   262 KEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANF 321
             KEIF +RD  +EDPREV A K  LNYIGLDG IGCMVNGAGLAMATMDIIKL GG PANF
Sbjct:   260 KEIFEMRDTAEEDPREVEAGKFGLNYIGLDGNIGCMVNGAGLAMATMDIIKLKGGIPANF 319

Query:   322 LDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
             LDVGG+ASE  V EAFKILT D +VK +LVNIFGGIMKCD+IASGIVNA+KQV
Sbjct:   320 LDVGGSASEQAVTEAFKILTKDPRVKCLLVNIFGGIMKCDIIASGIVNASKQV 372

GO:0046872 "metal ion binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004776 "succinate-CoA ligase (GDP-forming) activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1RK10 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
 Identities = 200/359 (55%), Positives = 259/359 (72%)

Query:    19 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQI 78
             Q QQQQ R L++HEY   EL+ + G+++PKG    S DE   AI       K++V+K+Q+
Sbjct:    44 QIQQQQQRNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAY-AIAKKLGS-KDVVIKAQV 101

Query:    79 LAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL 137
             LAGGRG GTF+SGLKGGV IV   EE + ++ +M+G+ L TKQTG +G+I ++V +CE+ 
Sbjct:   102 LAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERR 161

Query:   138 SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAK 197
                 E YFAI ++R   GP++IG S+GG +IED+A + P  IVK PID+  GI  E A +
Sbjct:   162 YPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVR 221

Query:   198 VVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDD 255
             +    G  P + D   A E + KLY LF + D T++EINP+ E S   ++  DAK+NFD 
Sbjct:   222 LAQKMGFPPSIVD--SAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDS 279

Query:   256 NAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHG 315
             N+A+RQK+IF L+D TQED R+  AAKA+LNYIGLDG IGC+VNGAGLAMATMDIIKLHG
Sbjct:   280 NSAYRQKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHG 339

Query:   316 GTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
             GTPANFLDVGG A+  QV EAFK++TSD+KV +ILVNIFGGIM+CDVIA GIV A K +
Sbjct:   340 GTPANFLDVGGGATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDL 398

GO:0005739 "mitochondrion" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|O97580 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
 Identities = 200/359 (55%), Positives = 259/359 (72%)

Query:    19 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQI 78
             Q QQQQ R L++HEY   EL+ + G+++PKG    S DE   AI       K++V+K+Q+
Sbjct:     6 QIQQQQQRNLSLHEYMSMELLQEAGVSIPKGHVAKSPDEAY-AIAKKLGS-KDVVIKAQV 63

Query:    79 LAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL 137
             LAGGRG GTF+SGLKGGV IV   EE + ++ +M+G+ L TKQTG +G+I ++V +CE+ 
Sbjct:    64 LAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERR 123

Query:   138 SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAK 197
                 E YFAI ++R   GP++IG S+GG +IED+A + P  IVK PID+  GI  E A +
Sbjct:   124 YPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVR 183

Query:   198 VVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDD 255
             +    G  P + D   A E + KLY LF + D T++EINP+ E S   ++  DAK+NFD 
Sbjct:   184 LAQKMGFPPSIVD--SAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDAKINFDS 241

Query:   256 NAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHG 315
             N+A+RQK+IF L+D TQED R+  AAKA+LNYIGLDG IGC+VNGAGLAMATMDIIKLHG
Sbjct:   242 NSAYRQKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHG 301

Query:   316 GTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
             GTPANFLDVGG A+  QV EAFK++TSD+KV +ILVNIFGGIM+CDVIA GIV A K +
Sbjct:   302 GTPANFLDVGGGATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDL 360

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1963 sucla2 "succinate-CoA ligase, ADP-forming, beta subunit" [Danio rerio (taxid:7955)]

 Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
 Identities = 194/349 (55%), Positives = 257/349 (73%)

Query:    23 QQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGG 82
             QQ R+L++HEY    L+ + GI+VP G+  ++ DE   A +      K+LV+K+Q+LAGG
Sbjct:    51 QQQRKLSLHEYMSIGLLKEAGISVPAGMVASTPDEAYTAAKQI--GSKDLVIKAQVLAGG 108

Query:    83 RGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN 141
             RG GTF+ GLKGGV IV   EE  D++ KM+G+ L TKQTG  G+I ++V++CE+     
Sbjct:   109 RGKGTFEGGLKGGVRIVYSPEEARDISSKMIGKKLFTKQTGEAGRICNQVFVCERRYPRR 168

Query:   142 EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDG 201
             E YFAI ++R   GP++IG S+GG +IED+A + P+ IVK PID+  GI  + A KV + 
Sbjct:   169 EYYFAITMERSYQGPVLIGSSQGGVNIEDVAAENPDAIVKEPIDIVEGIKMDQAIKVAEK 228

Query:   202 LAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 261
             +    A  N+A E + KLY +F + D +++EINP+ E S   ++  DAK+NFD NAA+RQ
Sbjct:   229 MGFPPALINEAAENMLKLYDVFIKYDASMVEINPMVEDSSGIVMCMDAKINFDSNAAYRQ 288

Query:   262 KEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANF 321
             K++F +RD +QED R+  AAKADLNYIGLDG IGC+VNGAGLAMATMDIIKLHGGTPANF
Sbjct:   289 KKVFDMRDWSQEDARDRQAAKADLNYIGLDGTIGCLVNGAGLAMATMDIIKLHGGTPANF 348

Query:   322 LDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNA 370
             LDVGG A+  QV EAFK++TSD+KV+AILVNIFGGIM+CDVIA GI+ A
Sbjct:   349 LDVGGGATAQQVTEAFKLITSDKKVQAILVNIFGGIMRCDVIAQGIIMA 397

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|Q9P2R7 SUCLA2 "Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 977 (349.0 bits), Expect = 2.2e-98, P = 2.2e-98
 Identities = 200/359 (55%), Positives = 258/359 (71%)

Query:    19 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQI 78
             Q QQQQ R L++HEY   EL+ + G++VPKG    S DE   AI       K++V+K+Q+
Sbjct:    44 QVQQQQQRNLSLHEYMSMELLQEAGVSVPKGYVAKSPDEAY-AIAKKLGS-KDVVIKAQV 101

Query:    79 LAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL 137
             LAGGRG GTF+SGLKGGV IV   EE + ++ +M+G+ L TKQTG +G+I ++V +CE+ 
Sbjct:   102 LAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERK 161

Query:   138 SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAK 197
                 E YFAI ++R   GP++IG S GG +IED+A + P  I+K PID+  GI  E A +
Sbjct:   162 YPRREYYFAITMERSFQGPVLIGSSHGGVNIEDVAAESPEAIIKEPIDIEEGIKKEQALQ 221

Query:   198 VVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDD 255
             +    G  P + +   A E + KLY LF + D T++EINP+ E S   ++  DAK+NFD 
Sbjct:   222 LAQKMGFPPNIVE--SAAENMVKLYSLFLKYDATMIEINPMVEDSDGAVLCMDAKINFDS 279

Query:   256 NAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHG 315
             N+A+RQK+IF L+D TQED R+  AAKA+LNYIGLDG IGC+VNGAGLAMATMDIIKLHG
Sbjct:   280 NSAYRQKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHG 339

Query:   316 GTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
             GTPANFLDVGG A+  QV EAFK++TSD+KV AILVNIFGGIM+CDVIA GIV A K +
Sbjct:   340 GTPANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDL 398

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006105 "succinate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=TAS

GO:0006781 "succinyl-CoA pathway" evidence=NAS

GO:0006099 "tricarboxylic acid cycle" evidence=IEA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006104 "succinyl-CoA metabolic process" evidence=TAS

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:1306775 Sucla2 "succinate-Coenzyme A ligase, ADP-forming, beta subunit" [Mus musculus (taxid:10090)]

 Score = 976 (348.6 bits), Expect = 2.8e-98, P = 2.8e-98
 Identities = 199/359 (55%), Positives = 258/359 (71%)

Query:    19 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQI 78
             Q QQQQ R L++HEY   EL+ + G++VPKG    S DE   AI       K++V+K+Q+
Sbjct:    44 QVQQQQQRTLSLHEYLSMELLQEAGVSVPKGFVAKSSDEAY-AIAKKLGS-KDVVIKAQV 101

Query:    79 LAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL 137
             LAGGRG GTF SGLKGGV IV   EE + ++ +M+GQ L+TKQTG +G+I ++V +CE+ 
Sbjct:   102 LAGGRGKGTFTSGLKGGVKIVFSPEEAKAVSSQMIGQKLITKQTGEKGRICNQVLVCERK 161

Query:   138 SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAK 197
                 E YFAI ++R   GP++IG ++GG +IED+A + P  IVK PID+  GI  E A  
Sbjct:   162 YPRREYYFAITMERSFQGPVLIGSAQGGVNIEDVAAENPEAIVKEPIDIVEGIKKEQAVT 221

Query:   198 VVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDD 255
             +    G    + D   A E + KLY LF + D T++EINP+ E S  +++  DAK+NFD 
Sbjct:   222 LAQKMGFPSNIVD--SAAENMIKLYNLFLKYDATMVEINPMVEDSDGKVLCMDAKINFDS 279

Query:   256 NAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHG 315
             N+A+RQK+IF L+D +QED R+  AA AD+NYIGLDG IGC+VNGAGLAMATMDIIKLHG
Sbjct:   280 NSAYRQKKIFDLQDWSQEDERDKEAANADINYIGLDGSIGCLVNGAGLAMATMDIIKLHG 339

Query:   316 GTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
             GTPANFLDVGG A+  QV EAFK++TSD+KV+AILVNIFGGIM+CDVIA GIV A K +
Sbjct:   340 GTPANFLDVGGGATVQQVTEAFKLITSDKKVQAILVNIFGGIMRCDVIAQGIVMAVKDL 398

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004774 "succinate-CoA ligase activity" evidence=ISS

GO:0004775 "succinate-CoA ligase (ADP-forming) activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006099 "tricarboxylic acid cycle" evidence=ISO

GO:0006104 "succinyl-CoA metabolic process" evidence=ISO

GO:0006105 "succinate metabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q57AX2	SUCC_BRUAB	6, ., 2, ., 1, ., 5	0.5128	0.8756	0.8668	yes	no
Q2W063	SUCC_MAGSA	6, ., 2, ., 1, ., 5	0.5099	0.8781	0.8693	yes	no
Q9YI36	SUCB2_COLLI	6, ., 2, ., 1, ., 4	0.5159	0.8680	0.8746	N/A	no
A5VSQ3	SUCC_BRUO2	6, ., 2, ., 1, ., 5	0.5128	0.8756	0.8668	yes	no
B0CIT0	SUCC_BRUSI	6, ., 2, ., 1, ., 5	0.5128	0.8756	0.8668	yes	no
A8FD73	SUCC_BACP2	6, ., 2, ., 1, ., 5	0.5028	0.8578	0.8756	yes	no
Q65JP0	SUCC_BACLD	6, ., 2, ., 1, ., 5	0.5057	0.8578	0.8756	yes	no
A1AZH7	SUCC_PARDP	6, ., 2, ., 1, ., 5	0.5156	0.8756	0.8690	yes	no
P53588	SUCB1_CAEEL	6, ., 2, ., 1, ., 5	0.5013	0.9213	0.8344	yes	no
B1ZP17	SUCC_OPITP	6, ., 2, ., 1, ., 5	0.5114	0.8756	0.8778	yes	no
Q3IZ84	SUCC_RHOS4	6, ., 2, ., 1, ., 5	0.5071	0.8756	0.8690	yes	no
P53312	SUCB_YEAST	6, ., 2, ., 1, ., 5	0.4578	0.8883	0.8196	yes	no
Q9YI37	SUCB1_COLLI	6, ., 2, ., 1, ., 5	0.5428	0.8807	0.8401	N/A	no
A4IM83	SUCC_GEOTN	6, ., 2, ., 1, ., 5	0.5	0.8578	0.8756	yes	no
C4L610	SUCC_EXISA	6, ., 2, ., 1, ., 5	0.4971	0.8578	0.8756	yes	no
P66868	SUCC_BRUSU	6, ., 2, ., 1, ., 5	0.5128	0.8756	0.8668	yes	no
Q5L0N7	SUCC_GEOKA	6, ., 2, ., 1, ., 5	0.5042	0.8451	0.8626	yes	no
A3PN13	SUCC_RHOS1	6, ., 2, ., 1, ., 5	0.5071	0.8756	0.8690	yes	no
A1UQV9	SUCC_BARBK	6, ., 2, ., 1, ., 5	0.5099	0.8756	0.8668	yes	no
Q6FYD1	SUCC_BARQU	6, ., 2, ., 1, ., 5	0.4900	0.8756	0.8668	yes	no
B2UMH5	SUCC_AKKM8	6, ., 2, ., 1, ., 5	0.5373	0.8756	0.8778	yes	no
P66867	SUCC_BRUME	6, ., 2, ., 1, ., 5	0.5128	0.8756	0.8668	yes	no
Q9P567	SUCB_NEUCR	6, ., 2, ., 1, ., 4	0.5204	0.9137	0.8053	N/A	no
Q3ATR4	SUCC_CHLCH	6, ., 2, ., 1, ., 5	0.4742	0.8629	0.8717	yes	no
O82662	SUCB_ARATH	6, ., 2, ., 1, ., 5	0.8609	0.9492	0.8883	yes	no
Q9P2R7	SUCB1_HUMAN	6, ., 2, ., 1, ., 5	0.5539	0.8756	0.7451	yes	no
B1YIL7	SUCC_EXIS2	6, ., 2, ., 1, ., 5	0.5086	0.8578	0.8756	yes	no
Q6K9N6	SUCB_ORYSJ	6, ., 2, ., 1, ., 5	0.8636	0.9492	0.8862	yes	no
Q55AI5	SUCB1_DICDI	6, ., 2, ., 1, ., 5	0.5637	0.8883	0.7865	yes	no
Q6G1M1	SUCC_BARHE	6, ., 2, ., 1, ., 5	0.4957	0.8756	0.8668	yes	no
A9M8R2	SUCC_BRUC2	6, ., 2, ., 1, ., 5	0.5128	0.8756	0.8668	yes	no
Q148D5	SUCB1_BOVIN	6, ., 2, ., 1, ., 5	0.5521	0.8934	0.7602	yes	no
C0RFH1	SUCC_BRUMB	6, ., 2, ., 1, ., 5	0.5128	0.8756	0.8668	yes	no
Q84LB6	SUCB_SOLLC	6, ., 2, ., 1, ., 5	0.8594	0.9390	0.8872	N/A	no
B2S880	SUCC_BRUA1	6, ., 2, ., 1, ., 5	0.5128	0.8756	0.8668	yes	no
Q9Z2I9	SUCB1_MOUSE	6, ., 2, ., 1, ., 5	0.5517	0.8756	0.7451	yes	no
B9KNB3	SUCC_RHOSK	6, ., 2, ., 1, ., 5	0.5071	0.8756	0.8690	yes	no
O94415	SUCB_SCHPO	6, ., 2, ., 1, ., 4	0.4971	0.8883	0.8083	yes	no
A6WXE8	SUCC_OCHA4	6, ., 2, ., 1, ., 5	0.5099	0.8756	0.8668	yes	no
O97580	SUCB1_PIG	6, ., 2, ., 1, ., 5	0.5539	0.8756	0.8117	yes	no
A4WNM6	SUCC_RHOS5	6, ., 2, ., 1, ., 5	0.5099	0.8756	0.8690	yes	no
A8MM16	SUCC_ALKOO	6, ., 2, ., 1, ., 5	0.5	0.8578	0.8756	yes	no
A9IZV3	SUCC_BART1	6, ., 2, ., 1, ., 5	0.4957	0.8756	0.8668	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.983
4th Layer	6.2.1.5	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028552001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_44, whole genome shotgun sequence); (423 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00031891001	SubName- Full=Chromosome undetermined scaffold_60, whole genome shotgun sequence; (329 aa)	•	•	•	•	•	•	•		0.999
	GSVIVG00037069001	SubName- Full=Chromosome chr17 scaffold_85, whole genome shotgun sequence; (336 aa)	•	•	•	•	•	•	•		0.999
	GSVIVG00024946001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (528 aa)	•			•	•	•	•		0.999
	GSVIVG00020593001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (276 aa)	•			•		•	•		0.997
	GSVIVG00018534001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (973 aa)	•			•		•	•		0.997
	GSVIVG00027295001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (225 aa)	•			•		•	•		0.993
	GSVIVG00004046001	SubName- Full=Chromosome undetermined scaffold_588, whole genome shotgun sequence; (302 aa)	•			•		•	•		0.993
	GSVIVG00019672001	RecName- Full=Dihydrolipoyl dehydrogenase; EC=1.8.1.4; (502 aa)	•			•		•	•		0.956
	GSVIVG00018944001	RecName- Full=Citrate synthase; (466 aa)	•			•			•		0.908
	GSVIVG00009618001	RecName- Full=L-lactate dehydrogenase; EC=1.1.1.27; (350 aa)	•				•	•	•		0.896

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	394
PLN00124	422	PLN00124, PLN00124, succinyl-CoA ligase [GDP-formi	0.0
PRK00696	388	PRK00696, sucC, succinyl-CoA synthetase subunit be	1e-162
COG0045	387	COG0045, SucC, Succinyl-CoA synthetase, beta subun	1e-142
TIGR01016	386	TIGR01016, sucCoAbeta, succinyl-CoA synthetase, be	1e-129
PRK14046	392	PRK14046, PRK14046, malate--CoA ligase subunit bet	1e-118
pfam08442	202	pfam08442, ATP-grasp_2, ATP-grasp domain	1e-67
pfam00549	128	pfam00549, Ligase_CoA, CoA-ligase	1e-24
PLN02235	423	PLN02235, PLN02235, ATP citrate (pro-S)-lyase	2e-05

>gnl|CDD|177736 PLN00124, PLN00124, succinyl-CoA ligase [GDP-forming] subunit beta; Provisional

 Score =  730 bits (1887), Expect = 0.0
 Identities = 324/375 (86%), Positives = 353/375 (94%)

Query: 1   MVRGLLNKLVSRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKK 60
           M+RGLLNKL SRSL+VAG+WQ QQLRRLNIHEYQGAELM+KYG+NVPKG A +S+DEVKK
Sbjct: 1   MLRGLLNKLASRSLSVAGKWQHQQLRRLNIHEYQGAELMSKYGVNVPKGAAASSLDEVKK 60

Query: 61  AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQ 120
           A++  FPD  E+VVKSQILAGGRGLGTFK+GLKGGVHIVKK++ E+LAGKMLGQILVTKQ
Sbjct: 61  ALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKKDKAEELAGKMLGQILVTKQ 120

Query: 121 TGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIV 180
           TGP GK V+KVYLCEK+SLVNEMYFAI+LDR +AGP+II CSKGGTSIEDLAEK+P  I+
Sbjct: 121 TGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKFPEKII 180

Query: 181 KVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETS 240
           KVPID+F GITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFC+ DCT++EINPLAET+
Sbjct: 181 KVPIDIFKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLAETA 240

Query: 241 GKQLVAADAKLNFDDNAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNG 300
             QLVAADAKLNFDDNAAFRQKEIFALRD +QEDPREVAAAKADLNYIGLDGEIGCMVNG
Sbjct: 241 DGQLVAADAKLNFDDNAAFRQKEIFALRDTSQEDPREVAAAKADLNYIGLDGEIGCMVNG 300

Query: 301 AGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKC 360
           AGLAMATMDIIKLHGG+PANFLDVGGNASE QVVEAFKILTSD+KVKAILVNIFGGIMKC
Sbjct: 301 AGLAMATMDIIKLHGGSPANFLDVGGNASEQQVVEAFKILTSDDKVKAILVNIFGGIMKC 360

Query: 361 DVIASGIVNAAKQVS 375
           DVIASGIVNAAKQV 
Sbjct: 361 DVIASGIVNAAKQVG 375

Length = 422

>gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional

 Score =  460 bits (1187), Expect = e-162
 Identities = 174/354 (49%), Positives = 225/354 (63%), Gaps = 24/354 (6%)

Query: 29  NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKEL-----VVKSQILAGGR 83
           N+HEYQ  EL AKYG+ VP+G+   + +E  +A        +EL     VVK+Q+ AGGR
Sbjct: 2   NLHEYQAKELFAKYGVPVPRGIVATTPEEAVEAA-------EELGGGVWVVKAQVHAGGR 54

Query: 84  GLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNE 142
           G         GGV + K  EE  + A ++LG  LVT QTGP+G+ V+KV + E   +  E
Sbjct: 55  GKA-------GGVKLAKSPEEAREFAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKE 107

Query: 143 MYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD-- 200
            Y +I+LDR T   + +  ++GG  IE++AE+ P  I KV ID   G+    A ++    
Sbjct: 108 YYLSIVLDRATRRVVFMASTEGGMDIEEVAEETPEKIHKVAIDPLTGLQPFQAREIAFKL 167

Query: 201 GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 260
           GL  +        + +  LYK F E D +L+EINPL  T    L+A DAK+NFDDNA FR
Sbjct: 168 GLPGEQV--KQFAKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALDAKINFDDNALFR 225

Query: 261 QKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPAN 320
             ++  LRD ++EDP E  A+K  LNY+ LDG IGCMVNGAGLAMATMDIIKL+GG PAN
Sbjct: 226 HPDLAELRDLSEEDPLEAEASKYGLNYVKLDGNIGCMVNGAGLAMATMDIIKLYGGEPAN 285

Query: 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
           FLDVGG A+  +V EAFKI+ SD  VKAILVNIFGGI +CDVIA GI+ A K+V
Sbjct: 286 FLDVGGGATAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGIIAAVKEV 339

Length = 388

>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion]

 Score =  408 bits (1052), Expect = e-142
 Identities = 166/352 (47%), Positives = 227/352 (64%), Gaps = 19/352 (5%)

Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
           +N+HEYQ  EL AKYGI VP G    S +E ++A ++       +VVK+Q+ AGGRG   
Sbjct: 1   MNLHEYQAKELFAKYGIPVPPGYVATSPEEAEEAAKEL--GGGPVVVKAQVHAGGRGKA- 57

Query: 88  FKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL-SLVNEMYF 145
                 GGV + K  EE ++ A ++LG+     QT  +G+ V+KV + E +  +  E Y 
Sbjct: 58  ------GGVKLAKSPEEAKEAAEEILGK---NYQTDIKGEPVNKVLVEEAVDIIKKEYYL 108

Query: 146 AIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLA 203
           +I+LDR +  P+++  ++GG  IE++AEK P  IVKV +D   G+    A ++    GL 
Sbjct: 109 SIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLTGLRPYQARELAFKLGLE 168

Query: 204 PKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETS-GKQLVAADAKLNFDDNAAFRQK 262
            ++       + +KKLYKLF E D TL+EINPL  T  G  ++A DAK+  DDNA FR  
Sbjct: 169 GELV--KQVADIIKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNALFRHP 226

Query: 263 EIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFL 322
           ++  LRD ++EDPRE  A+   LNY+ LDG IGC+VNGAGLAMATMDI+KL+GG PANFL
Sbjct: 227 DLAELRDESEEDPREAEASGYGLNYVELDGNIGCIVNGAGLAMATMDIVKLYGGKPANFL 286

Query: 323 DVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
           DVGG A+  +V EAFK++ SD  VKAI VNIFGGI +CD +A GI+ A K+V
Sbjct: 287 DVGGGATAERVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGIIAALKEV 338

Length = 387

>gnl|CDD|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit

 Score =  377 bits (969), Expect = e-129
 Identities = 167/351 (47%), Positives = 226/351 (64%), Gaps = 14/351 (3%)

Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
           +N+HEYQ  ++ AKYGI VP+G    SV+E ++           +VVK+Q+ AGGRG   
Sbjct: 1   MNLHEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKL--GAGPVVVKAQVHAGGRGKA- 57

Query: 88  FKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
                 GGV + K KEE    A K+LG+ LVT QT P G+ V+K+ + E   +  E Y +
Sbjct: 58  ------GGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLS 111

Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAP 204
           I++DR    P+I+  ++GG  IE++AEK P  I+K  ID   G+    A ++    GL  
Sbjct: 112 IVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLTGLLPYQAREIAKKLGLEG 171

Query: 205 KVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEI 264
           ++  +   I  +KKLY++F E D +L+EINPL  T    L+A DAKL  DDNA FR  ++
Sbjct: 172 ELVKQVADI--IKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALFRHPDL 229

Query: 265 FALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDV 324
             +RD +QEDPREV A +  LNY+ LDG IGCMVNGAGLAMATMDIIKL+GG PANFLDV
Sbjct: 230 EEMRDYSQEDPREVLAKQWGLNYVALDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDV 289

Query: 325 GGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVS 375
           GG AS  +V EA K++ SD+ VK + +NIFGGI +CD++A G+V A K+V 
Sbjct: 290 GGGASAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGLVEALKEVG 340

This model is designated subfamily because it does not discriminate the ADP-forming enzyme ((EC 6.2.1.5) from the GDP_forming (EC 6.2.1.4) enzyme. The N-terminal half is described by the CoA-ligases model (pfam00549). The C-terminal half is described by the ATP-grasp model (pfam02222). This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G [Energy metabolism, TCA cycle]. Length = 386

>gnl|CDD|237594 PRK14046, PRK14046, malate--CoA ligase subunit beta; Provisional

 Score =  349 bits (898), Expect = e-118
 Identities = 158/348 (45%), Positives = 226/348 (64%), Gaps = 10/348 (2%)

Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
           ++IHEYQ  EL+A +G+ VP+G    S ++     ++    H   VVK+QI +G RG   
Sbjct: 1   MDIHEYQAKELLASFGVAVPRGALAYSPEQAVYRARELGGWH--WVVKAQIHSGARGKA- 57

Query: 88  FKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
                 GG+ + +   EV D A  +LG+ LVT QTGP+GK V +VY+     +  E+Y  
Sbjct: 58  ------GGIKLCRTYNEVRDAAEDLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLG 111

Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
            +LDRK+    +I  ++GG  IE++A K P  I++V ++   G+    A ++  GL   +
Sbjct: 112 FVLDRKSERVRVIASARGGMEIEEIAAKEPEAIIQVVVEPAVGLQQFQAREIAFGLGLDI 171

Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266
              + A++ +   Y+ F + D T+LEINPL  T   +++A DAK++FDDNA FR+  I  
Sbjct: 172 KQVSRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMSFDDNALFRRPNIAE 231

Query: 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG 326
           +RDP+QEDPRE  AA+  L+Y+GLDG+IGC+VNGAGLAMATMD+IKL GG PANFLDVGG
Sbjct: 232 MRDPSQEDPREAQAAEHGLSYVGLDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGG 291

Query: 327 NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
            AS  +V +AF+++ SD  VKAILVNIF GI +CD +A G+V AA++V
Sbjct: 292 GASPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVVQAAREV 339

Length = 392

>gnl|CDD|219843 pfam08442, ATP-grasp_2, ATP-grasp domain

 Score =  212 bits (542), Expect = 1e-67
 Identities = 97/213 (45%), Positives = 135/213 (63%), Gaps = 14/213 (6%)

Query: 29  NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTF 88
           N+HEYQ  EL+AKYG+ VP+G    S +E ++A +      K  VVK+Q+LAGGRG    
Sbjct: 1   NLHEYQAKELLAKYGVPVPRGEVAFSPEEAEEAAKKL--GGKVWVVKAQVLAGGRGKA-- 56

Query: 89  KSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI 147
                GGV + K  EE ++ A +MLG+ LVTKQTGP+GK V+KV + E + +  E Y +I
Sbjct: 57  -----GGVKLAKSPEEAKEAAKEMLGKNLVTKQTGPEGKPVNKVLVEEAVDIAREYYLSI 111

Query: 148 MLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPK 205
           +LDR + GP++I  ++GG  IE++A K P  I KVPID   G+T   A ++    GL  +
Sbjct: 112 VLDRASRGPVLIASTEGGVDIEEVAAKNPEAIHKVPIDPATGLTPYQAREIAFKLGLEGE 171

Query: 206 VADRNDAIEQVKKLYKLFCESDCTLLEINPLAE 238
           +  +  A + +KKLYKLF E D TL+EINPL E
Sbjct: 172 LVKQ--AADIIKKLYKLFVERDATLVEINPLVE 202

Length = 202

>gnl|CDD|215988 pfam00549, Ligase_CoA, CoA-ligase

 Score = 97.3 bits (243), Expect = 1e-24
 Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 1/83 (1%)

Query: 297 MVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVV-EAFKILTSDEKVKAILVNIFG 355
           +VNG  LAM  MD+IKL GG P NF+D+GG+A       +A K+  +D +VK IL++I  
Sbjct: 1   LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL 60

Query: 356 GIMKCDVIASGIVNAAKQVSALD 378
           G   C+  A G++ A K+  A +
Sbjct: 61  GYGACEDPAGGLLKAIKEARARE 83

This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilise ATP others use GTP. Length = 128

>gnl|CDD|177879 PLN02235, PLN02235, ATP citrate (pro-S)-lyase

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 37/247 (14%)

Query: 27  RLNIHEYQGAELMAKY-----GINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQIL 79
           R  I EY    L+ ++     GI++P   A    S D  + A ++ +    +LVVK  +L
Sbjct: 3   RKKIREYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDML 62

Query: 80  AGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLG-QILVTKQTGPQGKIVSKVYLCEKLS 138
            G RG    KSGL      +   +V     + LG ++ +    GP    + + ++     
Sbjct: 63  FGKRG----KSGLVA--LNLDLAQVATFVKERLGKEVEMGGCKGPITTFIVEPFVPHD-- 114

Query: 139 LVNEMYFAIMLDRKTAGPIIIGCS-----KGGTSIEDLAEKYPNMIVKVPIDVFNGITDE 193
              E Y +I+ DR       +GCS      GG  IE+  +K   + +         +T E
Sbjct: 115 --QEFYLSIVSDR-------LGCSISFSECGGIEIEENWDKVKTIFLPTE----APLTSE 161

Query: 194 DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNF 253
             A ++  L  ++  R    E +K ++ +F + D T LE+NP     G+     D +   
Sbjct: 162 ICAPLIATLPLEI--RGKIEEFIKGVFAVFQDLDFTFLEMNPFTLVDGEPY-PLDMRGEL 218

Query: 254 DDNAAFR 260
           DD AAF+
Sbjct: 219 DDTAAFK 225

Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	394
COG0045	387	SucC Succinyl-CoA synthetase, beta subunit [Energy	100.0
PLN00124	422	succinyl-CoA ligase [GDP-forming] subunit beta; Pr	100.0
PLN02235	423	ATP citrate (pro-S)-lyase	100.0
KOG1447	412	consensus GTP-specific succinyl-CoA synthetase, be	100.0
PRK14046	392	malate--CoA ligase subunit beta; Provisional	100.0
KOG2799	434	consensus Succinyl-CoA synthetase, beta subunit [E	100.0
TIGR01016	386	sucCoAbeta succinyl-CoA synthetase, beta subunit.	100.0
PRK00696	388	sucC succinyl-CoA synthetase subunit beta; Provisi	100.0
PF08442	202	ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650	100.0
PF13549	222	ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.	100.0
PF00549	153	Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e	99.66
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071	194	GARS_A: Phosphoribosylglycinamide synthetase, ATP-	99.46
COG1042	598	Acyl-CoA synthetase (NDP forming) [Energy producti	99.36
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	99.28
PF02786	211	CPSase_L_D2: Carbamoyl-phosphate synthase L chain,	99.25
COG0151	428	PurD Phosphoribosylamine-glycine ligase [Nucleotid	99.23
PRK08654	499	pyruvate carboxylase subunit A; Validated	99.17
PRK12815	1068	carB carbamoyl phosphate synthase large subunit; R	99.16
TIGR00877	423	purD phosphoribosylamine--glycine ligase. This enz	99.15
PLN02257	434	phosphoribosylamine--glycine ligase	99.14
PRK01372	304	ddl D-alanine--D-alanine ligase; Reviewed	99.12
PRK12833	467	acetyl-CoA carboxylase biotin carboxylase subunit;	99.07
COG1042	598	Acyl-CoA synthetase (NDP forming) [Energy producti	99.06
PRK07178	472	pyruvate carboxylase subunit A; Validated	99.06
PRK08591	451	acetyl-CoA carboxylase biotin carboxylase subunit;	99.06
TIGR00514	449	accC acetyl-CoA carboxylase, biotin carboxylase su	99.05
COG0458	400	CarB Carbamoylphosphate synthase large subunit (sp	99.04
KOG1254	600	consensus ATP-citrate lyase [Energy production and	99.04
PRK13789	426	phosphoribosylamine--glycine ligase; Provisional	99.03
TIGR01369	1050	CPSaseII_lrg carbamoyl-phosphate synthase, large s	99.01
PLN02735	1102	carbamoyl-phosphate synthase	99.01
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	99.01
COG0439	449	AccC Biotin carboxylase [Lipid metabolism]	99.0
PRK08462	445	biotin carboxylase; Validated	99.0
PRK14569	296	D-alanyl-alanine synthetase A; Provisional	98.99
PRK05294	1066	carB carbamoyl phosphate synthase large subunit; R	98.99
PF02222	172	ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T	98.98
PRK00885	420	phosphoribosylamine--glycine ligase; Provisional	98.97
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	98.96
PRK14572	347	D-alanyl-alanine synthetase A; Provisional	98.95
PRK13790	379	phosphoribosylamine--glycine ligase; Provisional	98.94
PRK01966	333	ddl D-alanyl-alanine synthetase A; Reviewed	98.94
PLN02735	1102	carbamoyl-phosphate synthase	98.93
PRK05586	447	biotin carboxylase; Validated	98.93
PLN02948	577	phosphoribosylaminoimidazole carboxylase	98.91
PRK08463	478	acetyl-CoA carboxylase subunit A; Validated	98.91
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	98.9
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	98.9
PRK06524	493	biotin carboxylase-like protein; Validated	98.87
PRK10446	300	ribosomal protein S6 modification protein; Provisi	98.86
PF07478	203	Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In	98.86
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	98.84
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	98.83
TIGR01205	315	D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a	98.8
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.8
TIGR01369	1050	CPSaseII_lrg carbamoyl-phosphate synthase, large s	98.78
PRK12999	1146	pyruvate carboxylase; Reviewed	98.78
PF13535	184	ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A	98.76
PRK12815	1068	carB carbamoyl phosphate synthase large subunit; R	98.76
PRK06395	435	phosphoribosylamine--glycine ligase; Provisional	98.76
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	98.75
PRK05294	1066	carB carbamoyl phosphate synthase large subunit; R	98.75
PRK06111	450	acetyl-CoA carboxylase biotin carboxylase subunit;	98.75
PRK14016	727	cyanophycin synthetase; Provisional	98.74
TIGR02068	864	cya_phycin_syn cyanophycin synthetase. Cyanophycin	98.71
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	98.69
KOG0237	788	consensus Glycinamide ribonucleotide synthetase (G	98.67
PRK14571	299	D-alanyl-alanine synthetase A; Provisional	98.66
PRK05784	486	phosphoribosylamine--glycine ligase; Provisional	98.65
TIGR01435	737	glu_cys_lig_rel glutamate--cysteine ligase/gamma-g	98.65
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	98.64
PRK07206	416	hypothetical protein; Provisional	98.62
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	98.6
PRK14570	364	D-alanyl-alanine synthetase A; Provisional	98.59
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	98.58
PRK02471	752	bifunctional glutamate--cysteine ligase/glutathion	98.58
PRK14568	343	vanB D-alanine--D-lactate ligase; Provisional	98.58
PRK13278	358	purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D	98.47
PRK12767	326	carbamoyl phosphate synthase-like protein; Provisi	98.45
PF08443	190	RimK: RimK-like ATP-grasp domain; InterPro: IPR013	98.45
TIGR03103	547	trio_acet_GNAT GNAT-family acetyltransferase TIGR0	98.44
PRK02186	887	argininosuccinate lyase; Provisional	98.43
TIGR02144	280	LysX_arch Lysine biosynthesis enzyme LysX. The fam	98.37
TIGR00768	277	rimK_fam alpha-L-glutamate ligases, RimK family. T	98.31
PF15632	329	ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa	98.27
PRK06849	389	hypothetical protein; Provisional	98.27
COG0189	318	RimK Glutathione synthase/Ribosomal protein S6 mod	98.21
COG0027	394	PurT Formate-dependent phosphoribosylglycinamide f	98.13
PRK13277	366	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo	98.13
COG1181	317	DdlA D-alanine-D-alanine ligase and related ATP-gr	97.75
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	97.67
PF02655	161	ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806	97.19
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	97.15
TIGR02291	317	rimK_rel_E_lig alpha-L-glutamate ligase-related pr	96.97
PLN02941	328	inositol-tetrakisphosphate 1-kinase	96.96
COG1759	361	5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu	96.78
PRK12458	338	glutathione synthetase; Provisional	95.84
COG3919	415	Predicted ATP-grasp enzyme [General function predi	95.83
PF14397	285	ATPgrasp_ST: Sugar-transfer associated ATP-grasp	95.13
TIGR01380	312	glut_syn glutathione synthetase, prokaryotic. This	94.15
PRK05246	316	glutathione synthetase; Provisional	94.12
PF13607	138	Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin	93.99
PF02955	173	GSH-S_ATP: Prokaryotic glutathione synthetase, ATP	92.16
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	91.9
PRK06091	555	membrane protein FdrA; Validated	91.0
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	90.1
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	89.82
PLN02522	608	ATP citrate (pro-S)-lyase	89.8
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	88.84
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	88.58
PF11379	355	DUF3182: Protein of unknown function (DUF3182); In	86.69
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	85.95
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	85.55
PF10281	38	Ish1: Putative stress-responsive nuclear envelope	85.54
PRK10727	343	DNA-binding transcriptional regulator GalR; Provis	85.39
COG2232	389	Predicted ATP-dependent carboligase related to bio	83.43
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	83.11
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	82.88
PRK09526	342	lacI lac repressor; Reviewed	82.78
PF14398	262	ATPgrasp_YheCD: YheC/D like ATP-grasp	82.73
cd06286	260	PBP1_CcpB_like Ligand-binding domain of a novel tr	80.76
cd06270	268	PBP1_GalS_like Ligand binding domain of DNA transc	80.74
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	80.71

>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]

Probab=100.00  E-value=5.8e-99  Score=737.06  Aligned_cols=347  Identities=47%  Similarity=0.753  Sum_probs=335.7

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      |+|||||+|++|++||||+|++.+++|+||+.++++++|  ..|+|||+|+++|||||+       |||+++ |++|+++
T Consensus         1 M~lhEYqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg--~~~~VvKaQV~aGGRGKa-------GGVk~~~s~~ea~~   71 (387)
T COG0045           1 MNLHEYQAKELFAKYGIPVPPGYVATSPEEAEEAAKELG--GGPVVVKAQVHAGGRGKA-------GGVKLAKSPEEAKE   71 (387)
T ss_pred             CcHHHHHHHHHHHHcCCCCCCceeeeCHHHHHHHHHHhC--CCcEEEEeeeeecCcccc-------CceEEeCCHHHHHH
Confidence            899999999999999999999999999999999999995  269999999999999996       999999 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCC-CeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecC
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID  185 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~-~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~  185 (394)
                      ++++|+++.   +|+++.|..++.+||||++++ .+|||+++..||+.++|++|+|.+||||||++++++||+|++.++|
T Consensus        72 ~a~~~lg~~---~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~k~~id  148 (387)
T COG0045          72 AAEEILGKN---YQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVD  148 (387)
T ss_pred             HHHHHhCcc---cccCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEEEEecCCCccHHHhhhhChhheeEEEeC
Confidence            999999986   699999999999999999995 5599999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCC-cEEEeeceeecCcchhccchhh
Q 016159          186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGK-QLVAADAKLNFDDNAAFRQKEI  264 (394)
Q Consensus       186 p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G-~~~alDaki~ldd~a~fR~~~~  264 (394)
                      |..|++++++|+++..+|+++..+.++++++.+||++|.++|++++|||||++|++| +++|+|||+.+||||.||||++
T Consensus       149 p~~g~~~~~aR~la~~lgl~~~~~~~~~~ii~~Ly~~f~~~Da~lvEINPLvvt~~~g~v~aLDaKi~~DdnAlfRHp~~  228 (387)
T COG0045         149 PLTGLRPYQARELAFKLGLEGELVKQVADIIKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNALFRHPDL  228 (387)
T ss_pred             CccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEeeccEEeCCCCcEEEEeeeeeccCcccccCcch
Confidence            999999999999999999999999999999999999999999999999999999954 8999999999999999999999


Q ss_pred             hccCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCC
Q 016159          265 FALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDE  344 (394)
Q Consensus       265 ~~~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~  344 (394)
                      ..+++.+++++.|..|++++|+|++|+||||||+|||||+|+|||+|+.+||+||||||+||+|+.+++++||+++++||
T Consensus       229 ~~~~d~~~ed~~e~~a~~~~l~yV~LdG~IG~ivNGAGLaMaTmDii~~~Gg~PANFLDvGGgA~~e~v~~a~~~il~d~  308 (387)
T COG0045         229 AELRDESEEDPREAEASGYGLNYVELDGNIGCIVNGAGLAMATMDIVKLYGGKPANFLDVGGGATAERVKEAFKLILSDP  308 (387)
T ss_pred             hhhhcccccChhHHHhhhCCCceEEecCcEEEEecChhHHHHHHHHHHHcCCCCcceeecCCCCCHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecce
Q 016159          345 KVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNY  386 (394)
Q Consensus       345 ~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~  386 (394)
                      +||+|||||||||++||+||+||++|+++.+.++  +-+.-||-
T Consensus       309 ~vk~IfVNIfGGI~rcD~vA~GIi~Al~e~~~~vPlVVRL~GtN  352 (387)
T COG0045         309 NVKAIFVNIFGGITRCDEVAEGIIAALKEVGVNVPLVVRLEGTN  352 (387)
T ss_pred             CccEEEEEEccCcCccHHHHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence            9999999999999999999999999999998666  77887773

>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional

Probab=100.00  E-value=7.3e-96  Score=740.64  Aligned_cols=367  Identities=84%  Similarity=1.258  Sum_probs=349.4

Q ss_pred             hhHHhhhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE
Q 016159           19 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI   98 (394)
Q Consensus        19 ~~~~~~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l   98 (394)
                      .+..+|.++|+|+|||+|+||++||||+|++.+++|++|+.++++++++..+|||+|+|+++|||||+||+++.+|||++
T Consensus        19 ~~~~~~~~~m~l~EyqaK~LL~~~GIpvp~~~va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l   98 (422)
T PLN00124         19 KWQHQQLRRLNIHEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHI   98 (422)
T ss_pred             hhhhhcccccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEE
Confidence            44445678899999999999999999999999999999999999999311389999999999999999998888999999


Q ss_pred             C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCC
Q 016159           99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPN  177 (394)
Q Consensus        99 ~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd  177 (394)
                      + + +|+++++++|+++.++++|+++.|..+++|+|+|++.+++|+|+|+++||..++|++++|.+||++||++++..||
T Consensus        99 ~~~-eea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvil~s~~GGv~IEeva~~~pd  177 (422)
T PLN00124         99 VKK-DKAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKFPE  177 (422)
T ss_pred             CCH-HHHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEEEEECCCCccHHHhhhhCch
Confidence            9 7 9999999999999988999998899999999999998899999999999966679998888999999999999999


Q ss_pred             eEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcch
Q 016159          178 MIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNA  257 (394)
Q Consensus       178 ~i~~~~v~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a  257 (394)
                      ++.+++++|..++++++++++++.|++++.+.+++++++.+||++|.++|++++|||||+++++|+++|+|||+.+||||
T Consensus       178 ~i~~~~id~~~~l~~~~a~~~~~~L~~~~~~~~~l~~ii~~L~~lf~~~d~~~lEINPL~vt~~G~~valDAKi~~DdnA  257 (422)
T PLN00124        178 KIIKVPIDIFKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLAETADGQLVAADAKLNFDDNA  257 (422)
T ss_pred             heeEEecCcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeeceEEccCCCEEEEEEEECcCCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhhhccCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHH
Q 016159          258 AFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAF  337 (394)
Q Consensus       258 ~fR~~~~~~~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~  337 (394)
                      .|||++++.+++++++++.|.+|++++++|++|+||||||+|||||+|+|||+|+.+||+||||+|+||+||.+++++|+
T Consensus       258 ~~R~~~~~~~~~~~~~~~~E~~a~~~~l~yv~ldG~Ig~~vnGaGlamaTmD~i~~~Gg~pANFlD~GG~a~~~~v~~a~  337 (422)
T PLN00124        258 AFRQKEIFALRDTSQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNASEQQVVEAF  337 (422)
T ss_pred             hhcChhhhhccCcccCChhHHHHhhCCCceECCCCcEEEEecCchHHHHHHHHHHHcCCCcceeeecCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecce
Q 016159          338 KILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNY  386 (394)
Q Consensus       338 ~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~  386 (394)
                      +++++||+||+|||||||||++||.||+||++|++++++++  +.++.||-
T Consensus       338 ~ii~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl~Gtn  388 (422)
T PLN00124        338 KILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRLEGTN  388 (422)
T ss_pred             HHHhcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEcCCCC
Confidence            99999999999999999999999999999999999998776  88988873

>PLN02235 ATP citrate (pro-S)-lyase

Probab=100.00  E-value=2.3e-85  Score=656.72  Aligned_cols=338  Identities=23%  Similarity=0.319  Sum_probs=310.6

Q ss_pred             cCCCHHHHHHHHHHc-----CCCCCCceee-CCHHHHHHHHHH---hCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE
Q 016159           28 LNIHEYQGAELMAKY-----GINVPKGLAV-ASVDEVKKAIQD---AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI   98 (394)
Q Consensus        28 m~L~E~~aK~lL~~~-----GIpvp~~~~~-~s~eea~~~a~~---lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l   98 (394)
                      .+|||||||+||++|     |||+|++.++ ++++|+.+++++   ++  ..++|||||+++|||||+       |||++
T Consensus         4 ~~l~EyqaK~ll~~~~~~~~gipvP~~~v~~~~~ee~~~~~~~~~~l~--~~~~VVKaQvl~GgRGKa-------GGVk~   74 (423)
T PLN02235          4 KKIREYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLS--STKLVVKPDMLFGKRGKS-------GLVAL   74 (423)
T ss_pred             ccccHHHHHHHHHHhhcccCCCCCCCCeeccCCHHHHHHHHHhhhhhC--CCcEEEEcccccCCCccc-------CceEE
Confidence            579999999999999     9999999999 999999999988   75  235799999999999996       99999


Q ss_pred             C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCC
Q 016159           99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPN  177 (394)
Q Consensus        99 ~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd  177 (394)
                      + |++|+++++++|+++.++|+  ++.| ++++|||||++++.+|+|++++.||..+  .+++|++|||+||+    +||
T Consensus        75 ~~s~~Ea~~~a~~~Lg~~l~t~--g~~G-~v~~vLVEe~v~i~~E~Ylsi~~DR~~~--~ii~S~~GGvdIEe----~pe  145 (423)
T PLN02235         75 NLDLAQVATFVKERLGKEVEMG--GCKG-PITTFIVEPFVPHDQEFYLSIVSDRLGC--SISFSECGGIEIEE----NWD  145 (423)
T ss_pred             eCCHHHHHHHHHHHhCCceEec--CCCc-cEeEEEEEecCCCcceEEEEEEEecCCC--EEEEECCCCCcccC----Chh
Confidence            9 99999999999999998764  6788 8999999999999999999999999985  49999999999996    699


Q ss_pred             eEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcch
Q 016159          178 MIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNA  257 (394)
Q Consensus       178 ~i~~~~v~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a  257 (394)
                      ++++++++|..|++++++++++..+++  ...+++.+++.+||++|.++|++++|||||++ .||+++|+|||+.+||||
T Consensus       146 ~i~k~~Id~~~gl~~~~~~~~~~~l~~--~~~~~~~~~l~~Ly~~F~~~D~tllEINPLv~-~dg~~~alDaK~~~DDnA  222 (423)
T PLN02235        146 KVKTIFLPTEAPLTSEICAPLIATLPL--EIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTL-VDGEPYPLDMRGELDDTA  222 (423)
T ss_pred             HeEEEEcCCCCCCCHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHcCCeEEEecceEe-eCCCEEEEEeEEcccCCC
Confidence            999999999999999999999998875  66889999999999999999999999999999 899999999999999999


Q ss_pred             hccchh-hhccCCC----CCCCHHhH------hhhcCCCeE--EccCCceeEEecChhHHHHHHHHHHHcC--CCcccee
Q 016159          258 AFRQKE-IFALRDP----TQEDPREV------AAAKADLNY--IGLDGEIGCMVNGAGLAMATMDIIKLHG--GTPANFL  322 (394)
Q Consensus       258 ~fR~~~-~~~~~~~----~~~~~~e~------~a~~~~l~y--~~l~G~Ig~~~nGaGl~m~t~D~i~~~g--g~~aNfl  322 (394)
                      .|||++ +..+.=+    .+.++.|.      +|++++|+|  ++|+||||||+|||||+|+|||+|+++|  |+||||+
T Consensus       223 ~fR~~~~~~~~~f~~~fgr~~~~~E~~~~~~d~a~~~~l~y~~v~ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFl  302 (423)
T PLN02235        223 AFKNFKKWGNIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYA  302 (423)
T ss_pred             cccCHhHhhhhcccccccCCCCHHHHhhccchhhhccCCceEEeCCCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceee
Confidence            999998 5434100    23378888      777899999  9999999999999999999999999999  9999999


Q ss_pred             ecCCCCCHHHHHHHHHHHh----cCCCccEEEEEccCCCCChHHHH---HHHHHHHHHcC-----Ccc--eEEeecce
Q 016159          323 DVGGNASEGQVVEAFKILT----SDEKVKAILVNIFGGIMKCDVIA---SGIVNAAKQVS-----ALD--CFGFHSNY  386 (394)
Q Consensus       323 D~gG~a~~~~~~~a~~~~l----~~~~v~~i~vni~ggi~~~d~vA---~gii~a~~~~~-----~~~--~~~~~~~~  386 (394)
                      |+||+||.+++++|+++++    +||++|+|||||||||+|||+||   +||++|+++++     .++  +.+..||-
T Consensus       303 DvGG~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN  380 (423)
T PLN02235        303 EYSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPN  380 (423)
T ss_pred             ecCCCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchhhhhhhhHHHHHHHHhhhccccCCccEEEECCCCC
Confidence            9999999999999999998    89999999999999999999999   99999999985     333  88998873

>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]

Probab=100.00  E-value=3.6e-86  Score=615.32  Aligned_cols=364  Identities=51%  Similarity=0.804  Sum_probs=354.4

Q ss_pred             HHhhhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-
Q 016159           21 QQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-   99 (394)
Q Consensus        21 ~~~~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-   99 (394)
                      +..|+|+++|.|||+|++|.+||+.+.++.++.+..|+.++++.++  ....|+|+|+++|||||++|.+|..|||++. 
T Consensus        13 ~k~~rR~LNLqEfQSK~~l~k~Gv~vQ~F~Va~n~kea~E~~k~f~--~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk   90 (412)
T KOG1447|consen   13 MKSQRRFLNLQEFQSKEILSKNGVRVQRFFVADNAKEALEAAKRFN--AKEYVVKAQILAGGRGKGVFNNGLKGGVHITK   90 (412)
T ss_pred             HHhhhhhccHHHhhhHHHHHhcCeeEEEEEEecCcHHHHHHHHhcC--CcceEEeeeeeecCcccceecCCccceeEEec
Confidence            5568999999999999999999999999999999999999999996  3468999999999999999999999999999 


Q ss_pred             CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeE
Q 016159          100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMI  179 (394)
Q Consensus       100 s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i  179 (394)
                      ++.++.+.+++|.+..+.|+||...|..+++|+|.|.+++.+|-|+.+..||+..|||++.|+.||||||.+++.+|++|
T Consensus        91 ~k~~vl~l~~qMIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlvaSP~GGmDIEaVAe~tPE~I  170 (412)
T KOG1447|consen   91 DKNVVLQLAKQMIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLVASPQGGMDIEAVAESTPELI  170 (412)
T ss_pred             CHhHHHHHHHHHHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEEecCCCCccHHHHhhhChHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcchhc
Q 016159          180 VKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAF  259 (394)
Q Consensus       180 ~~~~v~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a~f  259 (394)
                      ++.|+|...|+++.++.+|++.|+|.+....+.++-+.+||.+|..-|++.+|||||.-|++|+++|+|||+.|||||.|
T Consensus       171 fk~piDI~~gi~esq~l~~Ak~L~F~G~l~~~aA~eI~kLY~LF~avDAtQvEiNPl~ET~~G~V~cvDAK~NFDDnA~f  250 (412)
T KOG1447|consen  171 FKEPIDIFEGIKESQALRMAKNLGFVGPLKSQAADEITKLYNLFLAVDATQVEINPLGETPEGQVVCVDAKINFDDNAEF  250 (412)
T ss_pred             ccccchhccCCchHHHHHHHHhccccCcHHHHHHHHHHHHHHHHhhhcceEEEecccccCCCceEEEEeeeccCCchHhh
Confidence            99999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhccCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHH
Q 016159          260 RQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKI  339 (394)
Q Consensus       260 R~~~~~~~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~  339 (394)
                      ||++++++.+.++.+|.|.+|.+++|+|+.++|||+|++|||||+|+|||+|..+||+||||||+||+...+++++|+++
T Consensus       251 RQKdIFamd~~eE~dPrEveAakynLnYigmDGNIaClVNGAGLAMATmDiIkLnGGePANFLDvGGgV~EdqV~~Af~i  330 (412)
T KOG1447|consen  251 RQKDIFAMDDKEENDPREVEAAKYNLNYIGMDGNIACLVNGAGLAMATMDIIKLNGGEPANFLDVGGGVKEDQVYQAFKI  330 (412)
T ss_pred             hhcceeecccccccCchhhhhhhcCcceeeccCceEEEEccchhhhheeeeEEecCCCCcceeeccCcccHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecce
Q 016159          340 LTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNY  386 (394)
Q Consensus       340 ~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~  386 (394)
                      +++||+|++|||||||||.+|..||.||+.|.++++.++  +.+..||-
T Consensus       331 lTaDPkVk~iLvNiFGGIVNCAtIANGiv~A~~kl~LnVPlVVRLEGTN  379 (412)
T KOG1447|consen  331 LTADPKVKAILVNIFGGIVNCATIANGIVKACRKLELNVPLVVRLEGTN  379 (412)
T ss_pred             hccCCceeEEEEehhcceehhHhHhhHHHHHHHhhcCCCcEEEEEcCCC
Confidence            999999999999999999999999999999999999888  88888874

>PRK14046 malate--CoA ligase subunit beta; Provisional

Probab=100.00  E-value=1e-83  Score=650.35  Aligned_cols=347  Identities=45%  Similarity=0.751  Sum_probs=331.0

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCC-cEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK-ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~-PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      |+|+|||+|+||++||||||++.+++|++|+.++++++|   + |||||+|++.+||||+       |||+++ |+++++
T Consensus         1 m~l~E~eak~lL~~yGIpvp~~~~~~~~~ea~~~a~~lg---~p~~VvK~qv~~g~Rgk~-------GGV~l~~~~~e~~   70 (392)
T PRK14046          1 MDIHEYQAKELLASFGVAVPRGALAYSPEQAVYRARELG---GWHWVVKAQIHSGARGKA-------GGIKLCRTYNEVR   70 (392)
T ss_pred             CCCcHHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHcC---CCcEEEEeeeccCCCCcC-------CeEEEECCHHHHH
Confidence            899999999999999999999999999999999999998   6 5699999999999985       999999 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecC
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID  185 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~  185 (394)
                      +++++|+++.++++|+++.|..+++|+||+++++++|+|+|+++||.|+.|++++|.+||++||++++++||++++++++
T Consensus        71 ~a~~~ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i~  150 (392)
T PRK14046         71 DAAEDLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIASARGGMEIEEIAAKEPEAIIQVVVE  150 (392)
T ss_pred             HHHHHHhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEEeCCCCCchHHHhhhChhheEEEEcC
Confidence            99999999988899999999999999999999999999999999999985556666799999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcchhccchhhh
Q 016159          186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIF  265 (394)
Q Consensus       186 p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a~fR~~~~~  265 (394)
                      |..+++++++++++..+|+++...+++.+++.+||++|.++|++++|||||+++.+|+++|+|+|+.+||||.|||++++
T Consensus       151 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~l~~~f~~~d~~l~EINPl~~~~~g~~~alD~k~~~Ddna~~r~~~~~  230 (392)
T PRK14046        151 PAVGLQQFQAREIAFGLGLDIKQVSRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMSFDDNALFRRPNIA  230 (392)
T ss_pred             CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcEEEEEEcceEcCCCcEEEEeeeECccCCchhcChhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCC
Q 016159          266 ALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEK  345 (394)
Q Consensus       266 ~~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~  345 (394)
                      .++++++.++.|.+|++++|+|++|+||||||+||||++|+|||+|..+|++|+||+|+||+++++++.++++++++||+
T Consensus       231 ~~~~~~~~~~~e~~a~~~~l~yv~l~G~ig~i~nGaGl~m~t~D~i~~~gg~paNPlDlgg~a~~e~~~~aL~~ll~Dp~  310 (392)
T PRK14046        231 EMRDPSQEDPREAQAAEHGLSYVGLDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGGGASPERVAKAFRLVLSDRN  310 (392)
T ss_pred             hhcCcccCChhHHHHHHcCCceEccCCcEEEEeCCccHHHHHHHHHHhcCCCCcCCEEecCCCCHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEccCCCCChHHHHHHHHHHHHHcCCc--ceEEeec
Q 016159          346 VKAILVNIFGGIMKCDVIASGIVNAAKQVSAL--DCFGFHS  384 (394)
Q Consensus       346 v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~--~~~~~~~  384 (394)
                      |++||||++||+++|+.+|++|+++.++.+.+  .+.++.|
T Consensus       311 VdaVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPvvv~l~G  351 (392)
T PRK14046        311 VKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVRLAG  351 (392)
T ss_pred             CCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEcCC
Confidence            99999999999999999999999999985333  2555555

>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]

Probab=100.00  E-value=5.5e-85  Score=626.76  Aligned_cols=366  Identities=58%  Similarity=0.876  Sum_probs=355.8

Q ss_pred             hhHHhhhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE
Q 016159           19 QWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI   98 (394)
Q Consensus        19 ~~~~~~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l   98 (394)
                      +++.||.|++.+|||.+.+||.+||+.+|+++++.|||||.++++++|  +.-+|+|+|+++|||||++|.||..|||++
T Consensus        14 q~~~~~~r~L~~hey~~~~ll~~~Gv~vp~g~vA~speEA~~~akklg--~kdlVikAQ~lAgGRgKGtF~SglkgGV~i   91 (434)
T KOG2799|consen   14 QSYFQAERSLGIHEYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKLG--SKDLVIKAQVLAGGRGKGTFDSGLKGGVKI   91 (434)
T ss_pred             hhhhhHhhhhhHHHHHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHhC--CcceEEEeeecccCcccCCcCcCcCCceEE
Confidence            677888899999999999999999999999999999999999999996  356999999999999999999999999999


Q ss_pred             C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCC
Q 016159           99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPN  177 (394)
Q Consensus        99 ~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd  177 (394)
                      + +|+|+++.+.+|+++.++|+||++.|..++.|+|.+......|+|++++.||.+.+|+++.|..||++||.+++++||
T Consensus        92 Vf~p~Eak~va~qmiG~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr~~k~pliIas~kgg~~ie~vae~~pd  171 (434)
T KOG2799|consen   92 VFSPQEAKAVASQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDRHTKGPLIIASSKGGVNIEEVAEDTPD  171 (434)
T ss_pred             EeChHHHHHHHHHhhcceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHhcccCCCEEEEeccCCccHHHHhhhCcc
Confidence            9 999999999999999999999999999999999999999899999999999999999999999999999999999999


Q ss_pred             eEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCC-cEEEeeceeecCcc
Q 016159          178 MIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGK-QLVAADAKLNFDDN  256 (394)
Q Consensus       178 ~i~~~~v~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G-~~~alDaki~ldd~  256 (394)
                      .+.+.|++...|++++.|..+...||+++....++++.+.+||++|...|++.+|||||+.+.++ .++|.|+|+.+|||
T Consensus       172 ai~k~pi~~~~Gls~~~a~~v~~~lgfs~~~~~~a~~~~~kly~vf~~~dat~veinpl~e~t~d~~v~c~dak~~fd~n  251 (434)
T KOG2799|consen  172 AIIKKPIDNNTGLSPEIACLVADKLGFSPDGIRKAAKAVPKLYKVFHKSDATQVEINPLAEITSDHKVTCMDAKLNFDDN  251 (434)
T ss_pred             chhcccccccCCCCHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHhhccceeEEecchhhcccCceeeechhhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999998877 69999999999999


Q ss_pred             hhccchhhhccCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHH
Q 016159          257 AAFRQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEA  336 (394)
Q Consensus       257 a~fR~~~~~~~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a  336 (394)
                      |.|||+.++.|+|+.++++.|..|.++++||+.++|+||||+||||++|+|||+|+.+||.||||+|+||+|+.|+++++
T Consensus       252 a~fRq~~iF~~rd~~QEd~re~~aak~~ln~igldG~igC~vngaglamaTmdiiklhgg~panfldVGg~Atve~v~ea  331 (434)
T KOG2799|consen  252 AAFRQKKIFLLRDLSQEDPREVTAAKVDLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVEQVREA  331 (434)
T ss_pred             HHHHhhhhhhccchhhcCchhhhHHHhccceeccCCccceeeccchhhhhheeeeeecCCCCcceeeeCCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecce
Q 016159          337 FKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNY  386 (394)
Q Consensus       337 ~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~  386 (394)
                      |++|++||++.+|||||||||++||.+|.|++.+.+++.+++  |.+..||-
T Consensus       332 f~litsd~kv~ailvnifGgi~rCDvia~Giv~aar~l~~~ipiv~rlqgt~  383 (434)
T KOG2799|consen  332 FSLITSDKKVMAILVNIFGGIMRCDVIAFGIVLAARELELNIPIVVRLQGTR  383 (434)
T ss_pred             HHHHhcChhHHHHHHHHhcCeeeccceecchhhhhhhhhcCCCEEEEecCCc
Confidence            999999999999999999999999999999999999998777  99988874

>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit

Probab=100.00  E-value=1.3e-77  Score=606.69  Aligned_cols=349  Identities=47%  Similarity=0.759  Sum_probs=330.0

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      |+|+||++|++|++||||||++.++++++|+.++++++|  .+|+|||++++.||||++       |||+++ |++++.+
T Consensus         1 m~L~E~~aK~ll~~~GIpvp~~~~~~~~~ea~~~~~~ig--~~PvVvK~~~~~ggkg~~-------GGV~~~~~~~e~~~   71 (386)
T TIGR01016         1 MNLHEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKLG--AGPVVVKAQVHAGGRGKA-------GGVKVAKSKEEARA   71 (386)
T ss_pred             CCCcHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhC--CCcEEEEecccCCCCccC-------ceEEEeCCHHHHHH
Confidence            889999999999999999999999999999999999985  369999999888888874       999999 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCC
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV  186 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p  186 (394)
                      ++++++++.+.++|++++|..+++++||||+++++|+|+|++.||...+|+|++|.+||++||++++.+|++++++.++|
T Consensus        72 a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p  151 (386)
T TIGR01016        72 AAEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDP  151 (386)
T ss_pred             HHHHHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCC
Confidence            99999987777777766788889999999999999999999999984469999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcchhccchhhhc
Q 016159          187 FNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA  266 (394)
Q Consensus       187 ~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a~fR~~~~~~  266 (394)
                      ..++++++++.+...+++++.+.+++.+++.+||++|.++|++++|||||+++++|+++|+|||+.+||||.|||+++..
T Consensus       152 ~~~~~~~~a~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Daki~~dd~a~~r~~~~~~  231 (386)
T TIGR01016       152 LTGLLPYQAREIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALFRHPDLEE  231 (386)
T ss_pred             CcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEeeeEeeccchhhhcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             cCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCc
Q 016159          267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKV  346 (394)
Q Consensus       267 ~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v  346 (394)
                      +++.++.++.|.+|+++||+|++|+||||||+||||++|+|||++..+|++|+||+|+||++++++++++++++++||++
T Consensus       232 ~~~~~~~~~~e~~~~~~~l~~v~l~G~i~~i~nG~Gl~~~t~D~~~~~g~~~aNplDlgg~a~~~~~~~al~~l~~dp~v  311 (386)
T TIGR01016       232 MRDYSQEDPREVLAKQWGLNYVALDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGASAERVREALKLVLSDKSV  311 (386)
T ss_pred             hhcCCcCChhhhHHHHcCCcEEccCCcEEEEECCccHHHHHHHHHHHcCCCCCCcEEecCCCCHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecc
Q 016159          347 KAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSN  385 (394)
Q Consensus       347 ~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~  385 (394)
                      ++||||++||+++|+.+|++|+++.++++.++  +.++-|+
T Consensus       312 d~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv~~~g~  352 (386)
T TIGR01016       312 KVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRLEGT  352 (386)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence            99999999999999999999999999987433  5555553

This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G

>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional

Probab=100.00  E-value=1.7e-71  Score=562.28  Aligned_cols=346  Identities=49%  Similarity=0.779  Sum_probs=323.5

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh-CCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~l-g~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      |+|+||++|++|++||||+|++.++++++|+.++++++ |   ||+|+|++.+.+||+|+       |||+++ |+++++
T Consensus         1 m~l~e~~ak~lL~~~gIpvp~~~~~~~~~ea~~~a~~i~g---~PvVvK~~~~~ggk~~~-------GGV~l~~~~~e~~   70 (388)
T PRK00696          1 MNLHEYQAKELFAKYGVPVPRGIVATTPEEAVEAAEELGG---GVWVVKAQVHAGGRGKA-------GGVKLAKSPEEAR   70 (388)
T ss_pred             CCCCHHHHHHHHHHcCCCCCCCeeeCCHHHHHHHHHHcCC---CcEEEEEeeCCCCCccc-------ccEEEcCCHHHHH
Confidence            88999999999999999999999999999999999999 7   99999999888888874       999999 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceee-eeccCCCcceeeccccCCCeEEEEec
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPII-IGCSKGGTSIEDLAEKYPNMIVKVPI  184 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi-~~s~~GGv~iE~~~~~~pd~i~~~~v  184 (394)
                      +++++|+++.+.++++++.|..+.+++||||++++.|+|+|+++|+.|+ |+| ++|..||+++|.+++++|++++++.+
T Consensus        71 ~a~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fg-pvv~~~s~~GG~~vE~~~d~~~~~~~~~~l  149 (388)
T PRK00696         71 EFAKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATR-RVVFMASTEGGMDIEEVAEETPEKIHKVAI  149 (388)
T ss_pred             HHHHHhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCC-ceEEEEeCCCCcchhhhcccCcceeEEEEc
Confidence            9999999886656666667888899999999999999999999999997 666 57779999999999999999889999


Q ss_pred             CCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcchhccchhh
Q 016159          185 DVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEI  264 (394)
Q Consensus       185 ~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a~fR~~~~  264 (394)
                      +|..+++.++|++|++.+++++.+.+++++++.+||++|.+++++++|||||+++++|+++|+|||+.+||||.|||+++
T Consensus       150 ~p~~~~~~~~a~~~~~~~~~~~~~~~~l~~~l~~l~~l~~~~~~~~leiNPl~v~~~g~~~a~Dak~~ld~~a~~r~~~~  229 (388)
T PRK00696        150 DPLTGLQPFQAREIAFKLGLPGEQVKQFAKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALDAKINFDDNALFRHPDL  229 (388)
T ss_pred             CCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCccEEEEeceEECCCCcEEEEeeEEeecCCccccCHhH
Confidence            99988999999999999999999999999999999999999999999999999999988999999999999999999999


Q ss_pred             hccCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCC
Q 016159          265 FALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDE  344 (394)
Q Consensus       265 ~~~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~  344 (394)
                      .++++.++.++.|.+++.++|+|++++||||||+||||++|+|+|++..+|++|+||+|++|+++++.++++++++++||
T Consensus       230 ~~~~~~~~~~~~e~~~~~~~~~~v~l~~~i~ii~ng~G~~~~~~D~l~~~g~~~~NPvDl~g~~~~e~~~~aL~~l~~d~  309 (388)
T PRK00696        230 AELRDLSEEDPLEAEASKYGLNYVKLDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGATAERVAEAFKIILSDP  309 (388)
T ss_pred             HhhcCCCcCChhhhHHHhcCCcEEecCCcEEEEECCchHHHHHHHHHHHcCCCcCCeEEecCCCCHHHHHHHHHHHhcCC
Confidence            99988888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEccCCCCChHHHHHHHHHHHHHcCCc-c-eEEeec
Q 016159          345 KVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL-D-CFGFHS  384 (394)
Q Consensus       345 ~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~-~-~~~~~~  384 (394)
                      ++++||+|++|++++|+.+|++|+++.++.+.+ + +.++.|
T Consensus       310 ~vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~~~g  351 (388)
T PRK00696        310 NVKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVRLEG  351 (388)
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            999999999999999999999999999984222 2 555555

>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []

Probab=100.00  E-value=3.4e-51  Score=378.25  Aligned_cols=201  Identities=46%  Similarity=0.734  Sum_probs=180.8

Q ss_pred             CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159           29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL  107 (394)
Q Consensus        29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a  107 (394)
                      +|||||||+||++||||+|++.+++|++|+.++++++|  ..++|||||+++|||||+       |||+++ |++|++++
T Consensus         1 ~l~EyqaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l~--~~~~VvKaQvl~GgRGK~-------GgVk~~~s~~ea~~~   71 (202)
T PF08442_consen    1 NLHEYQAKELLRKYGIPVPRGVVATSPEEAREAAKELG--GKPLVVKAQVLAGGRGKA-------GGVKIAKSPEEAKEA   71 (202)
T ss_dssp             BE-HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHT--TSSEEEEE-SSSSTTTTT-------TCEEEESSHHHHHHH
T ss_pred             CchHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhC--CCcEEEEEeEeecCcccC-------CceeecCCHHHHHHH
Confidence            58999999999999999999999999999999999997  247899999999999996       999999 99999999


Q ss_pred             HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCCC
Q 016159          108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF  187 (394)
Q Consensus       108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p~  187 (394)
                      +++|+++.+.|+||++.|..+++|||||++++.+|||++++.||+.++|++++|.+|||+||++++++||++.++++||.
T Consensus        72 a~~mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~p~ii~S~~GGvdIEeva~~~P~~i~~~~id~~  151 (202)
T PF08442_consen   72 AKEMLGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRGPVIIASKEGGVDIEEVAAENPEKIIKFPIDPT  151 (202)
T ss_dssp             HHTTTTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTEEEEEEESSTSSTHHHHHHHSGGGEEEEEEBTT
T ss_pred             HHHHhCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCceEEEEeccCCccHHHHhhhChhhEEEEecCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceee
Q 016159          188 NGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAE  238 (394)
Q Consensus       188 ~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv  238 (394)
                      .|++++++++++..+|+++...+++++++.+||++|.++|++++|||||++
T Consensus       152 ~g~~~~~~~~i~~~lg~~~~~~~~~~~~l~~Ly~~F~~~DatllEINPL~~  202 (202)
T PF08442_consen  152 EGLTPYQAREIAKKLGLPGKLAEQLADILKKLYRLFREYDATLLEINPLVE  202 (202)
T ss_dssp             TB--HHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence            999999999999999999999999999999999999999999999999975

They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....

>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A

Probab=100.00  E-value=1.1e-36  Score=285.61  Aligned_cols=205  Identities=24%  Similarity=0.283  Sum_probs=148.6

Q ss_pred             hhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC--CH
Q 016159           24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KK  101 (394)
Q Consensus        24 ~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~--s~  101 (394)
                      +.++..|+|+++|++|+.||||+|++.+++|++|+.++++++|   ||||+|..++. =.+|     +++|||+++  |+
T Consensus         4 ~~g~~~L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig---~PvvlKi~sp~-i~HK-----sd~GgV~L~l~~~   74 (222)
T PF13549_consen    4 AEGRGWLTEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEIG---FPVVLKIVSPD-IAHK-----SDVGGVRLNLNSP   74 (222)
T ss_dssp             HTT--EE-HHHHHHHHHTTT------EEESSHHHHHHHHHHH----SSEEEEEE-TT----H-----HHHT-EEEEE-SH
T ss_pred             cCCCCccCHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHhC---CCEEEEEecCC-CCcC-----CCCCcEEECCCCH
Confidence            4567789999999999999999999999999999999999999   99999997642 1234     378999998  99


Q ss_pred             HHHHHHHHHHhcccccccccCCCCcccceEEEEeeeC-CCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEE
Q 016159          102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLS-LVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIV  180 (394)
Q Consensus       102 ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~-~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~  180 (394)
                      +++++++++|..+..   .. .++..+++|+||+|++ .+.|+.+|+.+|+.|| |+|+|| .||+.+|.++|.    . 
T Consensus        75 ~~v~~a~~~l~~~~~---~~-~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FG-Pvv~~G-~GG~~vE~~~D~----~-  143 (222)
T PF13549_consen   75 EEVREAFERLRERVA---AH-HPGARIDGVLVQEMAPSGGRELIVGVRRDPQFG-PVVMFG-LGGIFVELLKDV----A-  143 (222)
T ss_dssp             HHHHHHHHHHHHHHH---HH--TT----EEEEEE------EEEEEEEEEETTTE-EEEEEE-E-STTHHHH-------E-
T ss_pred             HHHHHHHHHHHHHHH---Hh-CCCCccceEEEEEcccCCcEEEEEEEEECCCCC-CEEEEc-CCCceeeeecce----E-
Confidence            999999999987642   11 1345678999999998 8999999999999995 999999 999999999854    3 


Q ss_pred             EEecCCCCCCCHHHHHHHHHhCC----------CCcccHHHHHHHHHHHHHHhhcC-CcceeeecceeeccCCcEEEeec
Q 016159          181 KVPIDVFNGITDEDAAKVVDGLA----------PKVADRNDAIEQVKKLYKLFCES-DCTLLEINPLAETSGKQLVAADA  249 (394)
Q Consensus       181 ~~~v~p~~gl~~~~a~~l~~~lg----------~~~~~~~~l~~~l~~L~~l~~e~-d~~~lEINPLvv~~~G~~~alDa  249 (394)
                       +.++|   ++..+|++|++++.          .++.|++++++++.+++++..++ ++.++||||++++++| ++|+||
T Consensus       144 -~~l~P---l~~~~a~~mi~~l~~~~lL~G~RG~p~~d~~al~~~l~~ls~l~~~~p~I~eldiNPl~v~~~g-~~avDa  218 (222)
T PF13549_consen  144 -FRLPP---LSEADAREMIRELRAYPLLRGYRGRPPADLDALADLLVRLSQLAADLPEIAELDINPLIVTPDG-AVAVDA  218 (222)
T ss_dssp             -EEESS-----HHHHHHHHHTSTTHHHHH-------B-HHHHHHHHHHHHHHHHHTTTEEEEEEEEEEE-BS--EEE--E
T ss_pred             -EeeCC---CCHHHHHHHHHHHHhHHhhcccCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEEeeceEEcCCc-eEEEEE
Confidence             55677   69999999999883          35679999999999999999987 7889999999999988 999999


Q ss_pred             eeec
Q 016159          250 KLNF  253 (394)
Q Consensus       250 ki~l  253 (394)
                      +|.+
T Consensus       219 ~i~l  222 (222)
T PF13549_consen  219 RIRL  222 (222)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9875

>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6

Probab=99.66  E-value=3e-16  Score=139.09  Aligned_cols=90  Identities=41%  Similarity=0.619  Sum_probs=84.2

Q ss_pred             EecChhHHHHHHHHHHHc--------------CCCccceeecCCCCC----------HHHHHHHHHHHhcCCCccEEEEE
Q 016159          297 MVNGAGLAMATMDIIKLH--------------GGTPANFLDVGGNAS----------EGQVVEAFKILTSDEKVKAILVN  352 (394)
Q Consensus       297 ~~nGaGl~m~t~D~i~~~--------------gg~~aNflD~gG~a~----------~~~~~~a~~~~l~~~~v~~i~vn  352 (394)
                      |+|||||+|.|||+|..+              |+.++||+|+||++.          ++...++++.+++||++++||||
T Consensus         1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd   80 (153)
T PF00549_consen    1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD   80 (153)
T ss_dssp             EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred             CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence            689999999999999999              999999999999999          79999999999999999999999


Q ss_pred             ccCCCCChHHHHHHHHHHHHHcC---Ccc--eEEeecce
Q 016159          353 IFGGIMKCDVIASGIVNAAKQVS---ALD--CFGFHSNY  386 (394)
Q Consensus       353 i~ggi~~~d~vA~gii~a~~~~~---~~~--~~~~~~~~  386 (394)
                      +++|+.+|+++|.++++++++..   .++  +-++.||.
T Consensus        81 ~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~  119 (153)
T PF00549_consen   81 IVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTN  119 (153)
T ss_dssp             EESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTT
T ss_pred             eccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeec
Confidence            99999999999999999999987   555  77788874

2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....

>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6

Probab=99.46  E-value=5.7e-12  Score=115.86  Aligned_cols=175  Identities=23%  Similarity=0.235  Sum_probs=114.7

Q ss_pred             CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcE-EEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159           31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKEL-VVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA  108 (394)
Q Consensus        31 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~Pv-VvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~  108 (394)
                      ++..||++|.+||||++++..++++++|.++.++.+   .|+ |||++.+++|  |         ||.++ |.+|+.+++
T Consensus         2 SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~---~p~~ViKadGla~G--K---------GV~i~~~~~eA~~~l   67 (194)
T PF01071_consen    2 SKSFAKEFMKRYGIPTAKYKVFTDYEEALEYLEEQG---YPYVVIKADGLAAG--K---------GVVIADDREEALEAL   67 (194)
T ss_dssp             BHHHHHHHHHHTT-SB--EEEESSHHHHHHHHHHHS---SSEEEEEESSSCTT--T---------SEEEESSHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCCeeEECCHHHHHHHHHhcC---CCceEEccCCCCCC--C---------EEEEeCCHHHHHHHH
Confidence            356799999999999999999999999999999997   788 9999998864  5         69999 999999999


Q ss_pred             HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec------------cCCCcceeeccccCC
Q 016159          109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC------------SKGGTSIEDLAEKYP  176 (394)
Q Consensus       109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s------------~~GGv~iE~~~~~~p  176 (394)
                      ++++....       .|..-++|+|||++. |.|+.+.+..|....-|+...-            ..|||-         
T Consensus        68 ~~~~~~~~-------fg~~~~~vvIEE~l~-G~E~S~~a~~dG~~~~~lp~aqD~Kr~~dgd~GpnTGGMG---------  130 (194)
T PF01071_consen   68 REIFVDRK-------FGDAGSKVVIEEFLE-GEEVSLFALTDGKNFVPLPPAQDHKRLFDGDTGPNTGGMG---------  130 (194)
T ss_dssp             HHHHTSST-------TCCCGSSEEEEE----SEEEEEEEEEESSEEEEEEEBEEEEEEETTTEEEEESESE---------
T ss_pred             HHhccccc-------cCCCCCcEEEEeccC-CeEEEEEEEEcCCeEEECcchhccccccCCCCCCCCCCcc---------
Confidence            99986432       344447999999998 9999999999987643433322            112221         


Q ss_pred             CeEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcc-eeeecceeeccCCcEEEeeceeecCc
Q 016159          177 NMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCT-LLEINPLAETSGKQLVAADAKLNFDD  255 (394)
Q Consensus       177 d~i~~~~v~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~-~lEINPLvv~~~G~~~alDaki~ldd  255 (394)
                            .++|...++.+.-+++.+.+         +..++..|.+-  ..+.. .|-++ +++|.+| ..++.-.+.|.|
T Consensus       131 ------a~sp~p~~~~~~~~~i~~~I---------~~pt~~~l~~e--g~~y~GvLy~g-lMlt~~G-p~vlEfN~RfGD  191 (194)
T PF01071_consen  131 ------AYSPVPFITDELLEEIIEEI---------LEPTLKGLKKE--GIPYRGVLYAG-LMLTEDG-PKVLEFNVRFGD  191 (194)
T ss_dssp             ------EEESTTTS-HHHHHHHHHHT---------HHHHHHHHHHT--T---EEEEEEE-EEEETTE-EEEEEEESSGST
T ss_pred             ------ceeecccCCHHHHHHHHHHH---------HHHHHHHHHhc--CCCcceeeeee-eEEeCCC-cEEEEEeCCCCC
Confidence                  11232225555555544432         12233333331  11332 46666 7788777 888777666655

3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....

>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]

Probab=99.36  E-value=1.5e-13  Score=145.35  Aligned_cols=312  Identities=17%  Similarity=0.106  Sum_probs=192.7

Q ss_pred             hccCCCHHHHHHHHHHcC----CCCCCce------eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCccc
Q 016159           26 RRLNIHEYQGAELMAKYG----INVPKGL------AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGG   95 (394)
Q Consensus        26 ~~m~L~E~~aK~lL~~~G----Ipvp~~~------~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GG   95 (394)
                      .++..-+++.++.|.+||    +||++..      .|.+.......+.+++   +++|.|..++...+ +     ..++|
T Consensus        20 ~~~~~vg~~i~~nL~~~g~g~i~PVnp~~~~v~G~~ay~s~~~lp~~~dla---v~~v~~~~~~~i~~-~-----~~~kG   90 (598)
T COG1042          20 ERPGKLGYEILRNLLEYGQGKIYPVNPKYDEVLGVKAYTSVADLPDAPDLA---VIVVPAKVVPEIVH-E-----LGEKG   90 (598)
T ss_pred             CCcchhHHHHHHHHHhcCCCceEecCccccccccccccchHhhCCCCCCee---EEEechhhhHHHHH-H-----hhccC
Confidence            456678999999999999    9998887      5665555555555666   78888765442111 1     12345


Q ss_pred             EEEC--CHHHHHHHHHHHhccc--ccccccCCCCcccceEEEEeeeCCCeeEEEE--EEEeccCCceeeeeccCCCccee
Q 016159           96 VHIV--KKEEVEDLAGKMLGQI--LVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA--IMLDRKTAGPIIIGCSKGGTSIE  169 (394)
Q Consensus        96 V~l~--s~ee~~~a~~~~l~~~--l~~~q~~~~g~~v~~vlVee~v~~~~E~ylg--i~~Dr~~~~Pvi~~s~~GGv~iE  169 (394)
                      |+.+  ....++++.++.....  +..     ........++.++..+..+..+|  .+.++.+. +.  +. -|+..++
T Consensus        91 v~~~i~is~gf~e~~~~~~~~e~~~~~-----~a~~~~~rligPn~~G~~~~~~glna~f~p~~~-~~--~~-g~~afvs  161 (598)
T COG1042          91 VKGAIVISAGFREAGEEGMELEKELVE-----AARKYGMRIIGPNCLGLINPIIGLNATFDPVFG-LG--RG-GGGAFVS  161 (598)
T ss_pred             CceEEEechhhhHHhhhHhHHHHHHHH-----HHHhcCceEeccccccccccccccccccCcccc-cc--cC-CCeEEEE
Confidence            6555  4455555555432211  100     01122578889998878888888  77776664 33  33 4556676


Q ss_pred             eccccCCCeEEEEecCCCCCCCHHHHHHHHH----hCC------CCcccHHHHHHHHHHHHHHhhcC-Ccceeeecceee
Q 016159          170 DLAEKYPNMIVKVPIDVFNGITDEDAAKVVD----GLA------PKVADRNDAIEQVKKLYKLFCES-DCTLLEINPLAE  238 (394)
Q Consensus       170 ~~~~~~pd~i~~~~v~p~~gl~~~~a~~l~~----~lg------~~~~~~~~l~~~l~~L~~l~~e~-d~~~lEINPLvv  238 (394)
                      ...+-    .  +.+.+.   +...  +|-.    ++|      ..+.....+.+...+...++.|. +....++||...
T Consensus       162 qsgav----~--~~il~~---~~~~--~~g~s~~vs~gn~ad~~~~d~~~~~~~D~~tk~i~Ly~E~~~~~r~fl~~a~~  230 (598)
T COG1042         162 QSGAV----S--FAILDW---ANED--GMGFSIKVSLGNAADRDESDLLEYLADDPRTKAIGLYIEGVKDGRKFLNAARA  230 (598)
T ss_pred             echHH----H--Hhccch---hhhc--CCceeEEEeecchhhcCchHhHHHHhhCccceEEEEEeccchhHHHHHHHHHH
Confidence            65431    1  112221   1111  1110    011      10111111122222222233332 222345666655


Q ss_pred             ccCCc-EEEeeceeecCc------------------chhccchhhhccCCCCCC-CHHhHhhhcCCCeEEccCC-ceeEE
Q 016159          239 TSGKQ-LVAADAKLNFDD------------------NAAFRQKEIFALRDPTQE-DPREVAAAKADLNYIGLDG-EIGCM  297 (394)
Q Consensus       239 ~~~G~-~~alDaki~ldd------------------~a~fR~~~~~~~~~~~~~-~~~e~~a~~~~l~y~~l~G-~Ig~~  297 (394)
                      ...++ ++++|+......                  +|+|||.++.+..+..+. +..+.++.     +..+.| +++++
T Consensus       231 ~~~~kpii~lk~gr~~~~akAa~shTgslag~~~~y~Aa~~~agvir~~~~~elf~~~k~l~~-----~~~~~g~~~~iv  305 (598)
T COG1042         231 AERKKPIIALKAGRSEAGAKAAASHTGSLAGSDEAYDAAFKQAGVIRVESIEELFDAAKALSH-----QPPPAGDRVAII  305 (598)
T ss_pred             HhcCCCEEEEeccCCHHHHHHHhcccccccccchhhHHHHHhhCceeccChHHHHHHHHHhcc-----CCCCCCcceeEE
Confidence            44322 777775544321                  467788777665544443 33344443     556667 99999


Q ss_pred             ecChhHHHHHHHHHHHcCCCc---------------------cceeecCCCCCHHHHHHHHHHHhcCCCccEEEE-EccC
Q 016159          298 VNGAGLAMATMDIIKLHGGTP---------------------ANFLDVGGNASEGQVVEAFKILTSDEKVKAILV-NIFG  355 (394)
Q Consensus       298 ~nGaGl~m~t~D~i~~~gg~~---------------------aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~v-ni~g  355 (394)
                      +||+|.+.++.|.+...|++.                     .|++|+.|+++.++|.++++.+++|++++++++ ++++
T Consensus       306 tn~Gg~gvla~D~l~~~g~~l~~~~~~~~~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~~~~~~~~~llvi~~~~  385 (598)
T COG1042         306 TNGGGPGVLAADALEERGLKLAELSEETIEKLRSRLPPHASVKNPVDLTGDADAERYKKTLEILLRDENVDALLVIVLPP  385 (598)
T ss_pred             ecCCCccccchhHHHHcCCCcCCCCHHHHHHHHhhcCccccccCCeeeecCCcHHHHHHHHHHHHhccCCceEEEEecCC
Confidence            999999999999999999873                     399999999999999999999999999999777 8889


Q ss_pred             CCCChHHHHHHHHHHH
Q 016159          356 GIMKCDVIASGIVNAA  371 (394)
Q Consensus       356 gi~~~d~vA~gii~a~  371 (394)
                      ..+.....|+.++.+.
T Consensus       386 ~~~~~~~~a~~~~~~~  401 (598)
T COG1042         386 ASADPEETAEAIIRAT  401 (598)
T ss_pred             CCCCchhhhHHHHHhh
Confidence            8888888999999973

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=99.28  E-value=1.3e-11  Score=127.52  Aligned_cols=118  Identities=23%  Similarity=0.307  Sum_probs=98.5

Q ss_pred             chhccchhhhccCCCCCC-CHHhHhhhcCCCeEEccCC-ceeEEecChhHHHHHHHHHHHcCCCcc--------------
Q 016159          256 NAAFRQKEIFALRDPTQE-DPREVAAAKADLNYIGLDG-EIGCMVNGAGLAMATMDIIKLHGGTPA--------------  319 (394)
Q Consensus       256 ~a~fR~~~~~~~~~~~~~-~~~e~~a~~~~l~y~~l~G-~Ig~~~nGaGl~m~t~D~i~~~gg~~a--------------  319 (394)
                      ++.|||.++.+.++.+++ +..+.++.     ...+.| +|++++|+||+++++.|.+..+|.+++              
T Consensus       263 ~a~~~~~Gv~~~~~~~el~~~~~~l~~-----~~~~~g~rvaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~l  337 (447)
T TIGR02717       263 DAAFKQAGVIRADSIEELFDLARLLSN-----QPLPKGNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNIL  337 (447)
T ss_pred             HHHHHHCCeEEeCCHHHHHHHHHHHhc-----CCCCCCCeEEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhC
Confidence            368999999888876665 44555554     233445 999999999999999999999999865              


Q ss_pred             -------ceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEc-cCCCCChHHHHHHHHHHHHHcCCcc
Q 016159          320 -------NFLDVGGNASEGQVVEAFKILTSDEKVKAILVNI-FGGIMKCDVIASGIVNAAKQVSALD  378 (394)
Q Consensus       320 -------NflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni-~ggi~~~d~vA~gii~a~~~~~~~~  378 (394)
                             ||+|+++.++++.+.++++++++||+++++++++ +++.+.++.+|+.++++.++..-|+
T Consensus       338 p~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~~~~~~~~~~~~a~~l~~~~~~~~~KP  404 (447)
T TIGR02717       338 PPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEGAKKSNEKP  404 (447)
T ss_pred             ccccccCCCEecCCCCCHHHHHHHHHHHHcCCCCCEEEEEccCCccCCHHHHHHHHHHHHHhcCCCc
Confidence                   9999999999999999999999999999999854 5778889999999999999863334

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=99.25  E-value=2.6e-10  Score=106.69  Aligned_cols=107  Identities=23%  Similarity=0.313  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHcCCCCCCceee--CCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159           32 EYQGAELMAKYGINVPKGLAV--ASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA  108 (394)
Q Consensus        32 E~~aK~lL~~~GIpvp~~~~~--~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~  108 (394)
                      ...+++++++.|+|+|++...  .+.+|+.++|+++|   |||++||..  ||.|+         |.+++ |.+++.+++
T Consensus         2 k~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iG---yPVliKas~--ggGG~---------gm~iv~~~~eL~~~~   67 (211)
T PF02786_consen    2 KIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIG---YPVLIKASA--GGGGR---------GMRIVHNEEELEEAF   67 (211)
T ss_dssp             HHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH----SSEEEEETT--SSTTT---------SEEEESSHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcC---CceEEeecc--ccccc---------ccccccchhhhhhhh
Confidence            457899999999999999998  99999999999999   999999954  55465         68889 999999999


Q ss_pred             HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159          109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC  161 (394)
Q Consensus       109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s  161 (394)
                      ++.......     ..|  -..++||+++...+|+-+-+..|+..  -++.++
T Consensus        68 ~~~~~~s~~-----~fg--~~~v~iek~i~~~reiEvqvi~D~~g--n~~~~~  111 (211)
T PF02786_consen   68 ERAQRESPA-----AFG--DGPVLIEKFIEGAREIEVQVIRDGKG--NVVHLG  111 (211)
T ss_dssp             HHHHHHHHH-----HHS--TS-EEEEE--SSEEEEEEEEEEETTS--EEEEEE
T ss_pred             hhccccCcc-----ccc--cceEEEeeehhhhhhhhhhhhhcccc--ceeeee
Confidence            887654310     012  25899999999889999999999875  344444

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....

>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]

Probab=99.23  E-value=5.4e-11  Score=119.36  Aligned_cols=110  Identities=28%  Similarity=0.312  Sum_probs=94.2

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      ++.=++..+|++|++||||++.+..++++++|.+..++.|   .|+||||+.+++|  |         ||+++ +.+|+.
T Consensus        99 ~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~g---~piVVKadGLaaG--K---------GV~V~~~~eeA~  164 (428)
T COG0151          99 QLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEKG---APIVVKADGLAAG--K---------GVIVAMTLEEAE  164 (428)
T ss_pred             HHHhhHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHcC---CCEEEecccccCC--C---------CeEEcCCHHHHH
Confidence            4667888999999999999999999999999999999998   8999999999874  6         69999 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceee
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPII  158 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi  158 (394)
                      +++++|+....       .|.....|+|||+++ |.|+.+-...|...--|+.
T Consensus       165 ~a~~~~l~~~~-------fg~~g~~VVIEEfL~-GeE~S~~a~~DG~~v~p~p  209 (428)
T COG0151         165 AAVDEMLEGNA-------FGSAGARVVIEEFLD-GEEFSLQAFVDGKTVIPMP  209 (428)
T ss_pred             HHHHHHHhhcc-------ccCCCCcEEEEeccc-ceEEEEEEEEcCCeEEECc
Confidence            99999986542       232335799999999 8999999999987643433

>PRK08654 pyruvate carboxylase subunit A; Validated

Probab=99.17  E-value=1.9e-10  Score=120.56  Aligned_cols=175  Identities=20%  Similarity=0.292  Sum_probs=117.3

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE  103 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~--~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee  103 (394)
                      +..-+++.+|++|+++|||+|++..  +.+.+|+.++++++|   ||+|+||..  ||-|+         |++++ |++|
T Consensus       111 ~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~ig---yPvvIKp~~--GgGG~---------Gv~iv~~~~e  176 (499)
T PRK08654        111 EAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIG---YPVIIKASA--GGGGI---------GMRVVYSEEE  176 (499)
T ss_pred             HHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhC---CCEEEEeCC--CCCCC---------eEEEeCCHHH
Confidence            3446889999999999999999875  689999999999998   999999964  44455         79999 9999


Q ss_pred             HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEe
Q 016159          104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP  183 (394)
Q Consensus       104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~  183 (394)
                      +.++++.......    . ..+  -..++||++++..+|+.+.+..|...  .++.++ .....   +++++ .++... 
T Consensus       177 L~~a~~~~~~~a~----~-~f~--~~~v~vE~~I~~~r~ieVqvl~d~~G--~vv~l~-~recs---iqrr~-qk~ie~-  241 (499)
T PRK08654        177 LEDAIESTQSIAQ----S-AFG--DSTVFIEKYLEKPRHIEIQILADKHG--NVIHLG-DRECS---IQRRH-QKLIEE-  241 (499)
T ss_pred             HHHHHHHHHHHHH----H-hCC--CCeEEEEeCCCCCcEEEEEEEEcCCC--CEEEEe-eeccc---cccCc-cceEEE-
Confidence            9999887643221    0 012  14799999998889999999999754  455443 21222   23344 234333 


Q ss_pred             cCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeecc
Q 016159          184 IDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETS  240 (394)
Q Consensus       184 v~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~  240 (394)
                       .|...++++       .|.++++.+|+.+.-  . .+++      +.+.+..++||||.+..+
T Consensus       242 -~Pa~~l~~~~~~~l~~~A~~l~~algy~g~g--t-VEfl------~~~g~~yflEiNpRlqve  295 (499)
T PRK08654        242 -APSPIMTPELRERMGEAAVKAAKAINYENAG--T-VEFL------YSNGNFYFLEMNTRLQVE  295 (499)
T ss_pred             -CCCCCCCHHHHHHHHHHHHHHHHHcCCCCce--E-EEEE------EECCcEEEEEEECCCCCC
Confidence             232225553       345566777765420  0 0111      124467899999998643

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=99.16  E-value=3.2e-10  Score=128.48  Aligned_cols=167  Identities=22%  Similarity=0.255  Sum_probs=115.2

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      ....+....|++|+++|||+|++..+++.+|+.++++++|   ||+||||....|  |+         |+.++ |++|+.
T Consensus       124 ~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~ig---yPvVVKP~~g~g--G~---------Gv~iv~~~eEL~  189 (1068)
T PRK12815        124 QKGEDRERFRALMKELGEPVPESEIVTSVEEALAFAEKIG---FPIIVRPAYTLG--GT---------GGGIAENLEELE  189 (1068)
T ss_pred             HHhcCHHHHHHHHHHcCcCCCCceeeCCHHHHHHHHHHcC---CCEEEEECcCCC--CC---------ceEEECCHHHHH
Confidence            3446777889999999999999999999999999999998   999999975333  44         46677 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeecc---ccCCCeEEEE
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLA---EKYPNMIVKV  182 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~---~~~pd~i~~~  182 (394)
                      +++++.++..           ....++|||++++.+|+++.+.+|.... .+++..      +|.+.   -.+.+.+   
T Consensus       190 ~a~~~~~~~s-----------~~~~vLVEe~I~G~~E~sv~v~rD~~g~-~~~~~~------~e~~~p~gi~tG~s~---  248 (1068)
T PRK12815        190 QLFKQGLQAS-----------PIHQCLLEESIAGWKEIEYEVMRDRNGN-CITVCN------MENIDPVGIHTGDSI---  248 (1068)
T ss_pred             HHHHHHHhcC-----------CCCeEEEEEccCCCeEEEEEEEEcCCCC-EEEEEe------ceecccccccCCceE---
Confidence            9998876532           1258999999997799999999998654 333332      22221   1112232   


Q ss_pred             ecCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc---CCcceeeecceee
Q 016159          183 PIDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE---SDCTLLEINPLAE  238 (394)
Q Consensus       183 ~v~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e---~d~~~lEINPLvv  238 (394)
                      .+.|...+++.       .+.++++.||+.+...          .+++.+   .+..++||||.+-
T Consensus       249 ~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~----------vef~l~~~~g~~~ViEINPR~~  304 (1068)
T PRK12815        249 VVAPSQTLTDDEYQMLRSASLKIISALGVVGGCN----------IQFALDPKSKQYYLIEVNPRVS  304 (1068)
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceE----------EEEEEECCCCcEEEEEEecCcc
Confidence            23454445554       4455667777643211          123333   2467899999864

>TIGR00877 purD phosphoribosylamine--glycine ligase

Probab=99.15  E-value=9.3e-10  Score=112.72  Aligned_cols=102  Identities=26%  Similarity=0.312  Sum_probs=84.7

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCc-EEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKE-LVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~P-vVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      ..-+++..|++|+++|||+|++..+.+.+|+.++++++|   +| +|+||+...|  |+         ||.++ |.+++.
T Consensus       101 ~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~g---~P~~VvKp~~~~g--g~---------Gv~~v~~~~el~  166 (423)
T TIGR00877       101 LEGSKAFAKDFMKRYGIPTAEYEVFTDPEEALSYIQEKG---APAIVVKADGLAA--GK---------GVIVAKTNEEAI  166 (423)
T ss_pred             HHCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcC---CCeEEEEECCCCC--CC---------CEEEECCHHHHH
Confidence            345888999999999999999999999999999999998   99 9999975443  33         69999 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +++++++....        |.....++|||+++ +.|+++.+..|..
T Consensus       167 ~~~~~~~~~~~--------g~~~~~~lvEe~i~-G~E~sv~~~~dg~  204 (423)
T TIGR00877       167 KAVEEILEQKF--------GDAGERVVIEEFLD-GEEVSLLAFVDGK  204 (423)
T ss_pred             HHHHHHHHHhc--------CCCCCeEEEEECcc-CceEEEEEEEcCC
Confidence            99998865421        22225799999998 6899999998854

This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.

>PLN02257 phosphoribosylamine--glycine ligase

Probab=99.14  E-value=3.8e-09  Score=108.97  Aligned_cols=104  Identities=28%  Similarity=0.233  Sum_probs=85.4

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      ++.-++..+|++|+++|||+|++..+++.+++.+++++++   +|+||||....  .||         ||.++ |.+|+.
T Consensus        98 ~l~~dK~~~K~~l~~~GIptp~~~~~~~~~e~~~~~~~~g---~PvVVKp~~~~--~Gk---------GV~iv~~~~el~  163 (434)
T PLN02257         98 ALEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQG---APIVVKADGLA--AGK---------GVVVAMTLEEAY  163 (434)
T ss_pred             HHHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcC---CCEEEEcCCCC--CCC---------CEEEECCHHHHH
Confidence            4556899999999999999999999999999999999998   99999998543  355         69999 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +++++++....       .|.....++|||+++ +.|+.+.+..|..
T Consensus       164 ~a~~~~~~~~~-------fg~~~~~vlIEefi~-G~E~Sv~~~~dG~  202 (434)
T PLN02257        164 EAVDSMLVKGA-------FGSAGSEVVVEEFLD-GEEASFFALVDGE  202 (434)
T ss_pred             HHHHHHHhhhh-------ccCCCCeEEEEECCC-CCEEEEEEEECCC
Confidence            99998864321       222235799999998 5699998888854

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed

Probab=99.12  E-value=4e-09  Score=103.17  Aligned_cols=109  Identities=17%  Similarity=0.231  Sum_probs=85.6

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      ....+++..|++|+++|||+|++..+.+.+++..++++++   +|+|+||....+  |+         ||..+ |.+++.
T Consensus        94 ~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~~---~P~ivKP~~g~~--s~---------Gv~~v~~~~el~  159 (304)
T PRK01372         94 ALAMDKLRTKLVWQAAGLPTPPWIVLTREEDLLAAIDKLG---LPLVVKPAREGS--SV---------GVSKVKEEDELQ  159 (304)
T ss_pred             HHHhCHHHHHHHHHHCCCCCCCEEEEeCcchHHHHHhhcC---CCEEEeeCCCCC--CC---------CEEEeCCHHHHH
Confidence            3446889999999999999999999999999888999998   999999976332  33         68888 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCC
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGG  165 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GG  165 (394)
                      ++++++...          +   ..++||||++ ++|+.+.+..|...  |++-....++
T Consensus       160 ~~~~~~~~~----------~---~~~lvEe~i~-G~E~~v~vi~~~~~--~~~~~~~~~~  203 (304)
T PRK01372        160 AALELAFKY----------D---DEVLVEKYIK-GRELTVAVLGGKAL--PVIEIVPAGE  203 (304)
T ss_pred             HHHHHHHhc----------C---CcEEEEcccC-CEEEEEEEECCCcc--ceEEEEecCC
Confidence            888776421          1   4799999998 89999999877544  4443332343

>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional

Probab=99.07  E-value=4.5e-09  Score=109.37  Aligned_cols=171  Identities=15%  Similarity=0.169  Sum_probs=112.9

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV  104 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~  104 (394)
                      +.-+++.+|++|+++|||+|++.  .+.+.+|+.++++++|   ||+|+||..  ||-|+         ||+++ |++|+
T Consensus       115 ~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~ig---yPvvvKp~~--gggg~---------Gv~~v~~~~eL  180 (467)
T PRK12833        115 TMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIG---YPLMIKAAA--GGGGR---------GIRVAHDAAQL  180 (467)
T ss_pred             HhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhC---CCEEEEECC--CCCCC---------eEEEECCHHHH
Confidence            44589999999999999999985  8899999999999998   999999965  33355         79999 99999


Q ss_pred             HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEec
Q 016159          105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI  184 (394)
Q Consensus       105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v  184 (394)
                      .++++.......   .  ..+  -..++||+|++.++|+.+.+..|.. + .+.++-..     ..+.+++ +++...  
T Consensus       181 ~~a~~~~~~~~~---~--~~~--~~~vlvEefi~~~~ei~v~v~~dg~-~-~~~~~~~~-----~~~~r~~-~ki~e~--  243 (467)
T PRK12833        181 AAELPLAQREAQ---A--AFG--DGGVYLERFIARARHIEVQILGDGE-R-VVHLFERE-----CSLQRRR-QKILEE--  243 (467)
T ss_pred             HHHHHHHHHHHH---H--hcC--CCcEEEEecCCCCEEEEEEEEeCCC-c-EEEEEEee-----cccccCC-ccEEEE--
Confidence            998877543211   0  012  1469999999888999999998875 2 34333211     1122222 344443  


Q ss_pred             CCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc---CCcceeeecceeec
Q 016159          185 DVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE---SDCTLLEINPLAET  239 (394)
Q Consensus       185 ~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e---~d~~~lEINPLvv~  239 (394)
                      .|...++++       .+.++++.+|+.+.-.          .+++.+   .+..++||||....
T Consensus       244 ~p~~~l~~~~~~~l~~~a~~~~~alg~~G~~~----------vEf~~~~~~g~~~~iEvNpR~~~  298 (467)
T PRK12833        244 APSPSLTPAQRDALCASAVRLARQVGYRGAGT----------LEYLFDDARGEFYFIEMNTRIQV  298 (467)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHcCCcCcce----------EEEEEecCCCCEEEEEEECCCCc
Confidence            222235543       3445566666653100          011212   34789999998753

>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]

Probab=99.06  E-value=1.3e-10  Score=123.28  Aligned_cols=118  Identities=23%  Similarity=0.314  Sum_probs=102.3

Q ss_pred             hccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeec-CCCCCCcccCCCcccEEEC-CHHH
Q 016159           26 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILA-GGRGLGTFKSGLKGGVHIV-KKEE  103 (394)
Q Consensus        26 ~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~-ggRgK~~~~~~~~GGV~l~-s~ee  103 (394)
                      +...+.|+++++++.+|||++|++ ++.+++|+.++++.++        |..++. .|  |     +++|||.++ +..+
T Consensus       467 ~~~~~~~~e~~~~l~~~gi~~~~~-~~~~~~ea~~~a~~~~--------Kl~s~~i~h--k-----sev~gv~l~~~~~~  530 (598)
T COG1042         467 GGTTLDEPEAKELLEAYGIPVPAT-IASTLDEAVHIAESIG--------KLRSPDIDH--K-----SEVGGVMLNRTADA  530 (598)
T ss_pred             CccccCchhhhhHHHHhcCccccc-ccCCHHHHHHHHHHhh--------hccCCccch--h-----hhccceeecCcHHH
Confidence            345689999999999999999999 9999999999999983        554332 22  3     378999999 9999


Q ss_pred             HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccc
Q 016159          104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAE  173 (394)
Q Consensus       104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~  173 (394)
                      ++++++.++.+         . ..+.+++||+|..  .|+++++..|+.|+ |++++| .||+.+|.+.+
T Consensus       531 v~~a~~~~~~~---------p-a~i~g~lvq~m~~--~E~~vgv~~dp~fg-p~i~~G-~Gg~~ve~l~d  586 (598)
T COG1042         531 VEKAADDILAR---------P-ARIAGVLVQTMAK--LELIVGVKNDPTFG-PLILFG-EGGIEVEVLKD  586 (598)
T ss_pred             HHHHHHhHhcc---------c-chhhhhhhHhhhh--ccceeeccCCCcch-hHHHhc-CCceEEEeecc
Confidence            99999999865         2 4678999999998  99999999999996 999999 99999999985

>PRK07178 pyruvate carboxylase subunit A; Validated

Probab=99.06  E-value=1.6e-09  Score=112.79  Aligned_cols=173  Identities=17%  Similarity=0.247  Sum_probs=115.1

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE  103 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~--~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee  103 (394)
                      +..-+++.+|++|.++|||+|++..  +.+.+|+.++++++|   ||+||||..  ||-|+         ||.++ |++|
T Consensus       110 ~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~ig---yPvvvKp~~--ggGg~---------Gv~~v~~~~e  175 (472)
T PRK07178        110 RRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIG---YPVMLKATS--GGGGR---------GIRRCNSREE  175 (472)
T ss_pred             HHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcC---CcEEEEeCC--CCCCC---------CceEeCCHHH
Confidence            3446789999999999999998864  789999999999998   999999965  33344         68899 9999


Q ss_pred             HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEe
Q 016159          104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP  183 (394)
Q Consensus       104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~  183 (394)
                      +.++++.......   +  ..+  ...++||++++.++|+.+.+..|.... .+.++.  ....+   .+++ .++... 
T Consensus       176 L~~a~~~~~~~~~---~--~~~--~~~v~iE~~i~~~~eiev~v~~d~~G~-~v~~~e--r~~s~---~~~~-~~~~e~-  240 (472)
T PRK07178        176 LEQNFPRVISEAT---K--AFG--SAEVFLEKCIVNPKHIEVQILADSHGN-VVHLFE--RDCSI---QRRN-QKLIEI-  240 (472)
T ss_pred             HHHHHHHHHHHHH---H--hcC--CCCEEEEEcCCCCeEEEEEEEEECCCC-EEEEEc--cccce---EecC-cceEEE-
Confidence            9998887643321   0  012  136999999988899999999986543 443332  11222   2223 223222 


Q ss_pred             cCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhh--cCCcceeeecceeec
Q 016159          184 IDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFC--ESDCTLLEINPLAET  239 (394)
Q Consensus       184 v~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~--e~d~~~lEINPLvv~  239 (394)
                       .|...++++       .+.++++.+|+.+.-  .        .+++.  +.+..++||||.+..
T Consensus       241 -~P~~~l~~~~~~~i~~~a~~~~~aLg~~g~~--~--------vEf~~d~~g~~y~iEiNpRl~~  294 (472)
T PRK07178        241 -APSPQLTPEQRAYIGDLAVRAAKAVGYENAG--T--------VEFLLDADGEVYFMEMNTRVQV  294 (472)
T ss_pred             -CCCCCCCHHHHHHHHHHHHHHHHHcCCCcee--E--------EEEEEeCCCCEEEEEEeCCcCC
Confidence             232235553       456677777765410  0        12333  335789999999754

>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated

Probab=99.06  E-value=1.6e-09  Score=111.97  Aligned_cols=171  Identities=18%  Similarity=0.210  Sum_probs=111.8

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKG--LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV  104 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~--~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~  104 (394)
                      ..-+++..|++|+++|||+|++  ..+++.+|+.++++++|   ||+||||...  +.|+         ||.++ |.+|+
T Consensus       112 ~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g---~PvvvKP~~g--~gs~---------Gv~iv~~~~el  177 (451)
T PRK08591        112 LMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIG---YPVIIKATAG--GGGR---------GMRVVRTEAEL  177 (451)
T ss_pred             HhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcC---CCEEEEECCC--CCCc---------eEEEECCHHHH
Confidence            3457899999999999999987  47789999999999998   9999999653  3344         79999 99999


Q ss_pred             HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEec
Q 016159          105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI  184 (394)
Q Consensus       105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v  184 (394)
                      .+++++.......     ..+  -..++||||++.++|+.+.+..|...  .++.++   ..+. .....+ .++...  
T Consensus       178 ~~~~~~~~~~~~~-----~~~--~~~vlvEe~i~g~~e~~v~v~~d~~g--~~~~~~---~~~~-~~~~~~-~~~~~~--  241 (451)
T PRK08591        178 EKAFSMARAEAKA-----AFG--NPGVYMEKYLENPRHIEIQVLADGHG--NAIHLG---ERDC-SLQRRH-QKVLEE--  241 (451)
T ss_pred             HHHHHHHHHHHHH-----hcC--CCCEEEEeCCCCCcEEEEEEEEcCCC--CEEEEe---cccc-cceecc-eeEEEE--
Confidence            9999886532210     011  14699999998778999999998754  454443   1111 111111 122222  


Q ss_pred             CCCCCCCH-------HHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc--CCcceeeecceee
Q 016159          185 DVFNGITD-------EDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEINPLAE  238 (394)
Q Consensus       185 ~p~~gl~~-------~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e--~d~~~lEINPLvv  238 (394)
                      .|...++.       ..+.++++.+|+.+...          .+++.+  .+..++||||..-
T Consensus       242 ~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~----------vEf~~~~~g~~~viEINpR~~  294 (451)
T PRK08591        242 APSPAITEELRRKIGEAAVKAAKAIGYRGAGT----------IEFLYEKNGEFYFIEMNTRIQ  294 (451)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHcCCCceEE----------EEEEEcCCCCEEEEEEECCCC
Confidence            23223454       34455667777653100          122333  3477999999874

>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit

Probab=99.05  E-value=1e-08  Score=106.10  Aligned_cols=112  Identities=18%  Similarity=0.194  Sum_probs=86.8

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE  103 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee  103 (394)
                      ++.-+++..|++|+++|||+|++.  ++.+.+|+.++++++|   ||+||||....|  |+         ||+++ |++|
T Consensus       111 ~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig---~PvvvKP~~g~g--s~---------Gv~~v~~~~e  176 (449)
T TIGR00514       111 RLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIG---YPVIIKATAGGG--GR---------GMRVVREPDE  176 (449)
T ss_pred             HHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhC---CCEEEEeCCCCC--CC---------ccEEECCHHH
Confidence            445688999999999999999874  6789999999999998   999999975433  44         68899 9999


Q ss_pred             HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159          104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC  161 (394)
Q Consensus       104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s  161 (394)
                      +.++++.......  .+   .+  ...++||||++.++|+.+.+..|...  .++.++
T Consensus       177 l~~~~~~~~~~~~--~~---~~--~~~vlvEe~i~g~~e~~v~v~~d~~g--~~~~~~  225 (449)
T TIGR00514       177 LVKSISMTRAEAK--AA---FG--NDGVYIEKYIENPRHVEIQVLADKYG--NAIYLG  225 (449)
T ss_pred             HHHHHHHHHHHHH--Hh---CC--CCCEEEEECCCCCeEEEEEEEEcCCC--CEEEEe
Confidence            9999887654221  00   11  24799999998789999999998643  344443

This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.

>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=99.04  E-value=1.8e-09  Score=108.22  Aligned_cols=169  Identities=21%  Similarity=0.235  Sum_probs=114.9

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ..-+..-.|+.|++.|+|+| +.++.+.+++.+.++.+|   +|++|||-.-.||.           |..++ |.+|+.+
T Consensus       113 iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig---~PvIVrP~~~lGG~-----------G~~i~~n~eel~~  177 (400)
T COG0458         113 IAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIG---YPVIVKPSFGLGGS-----------GGGIAYNEEELEE  177 (400)
T ss_pred             hhhhHHHHHHHHHHcCCCCC-ccccccHHHHhhhHhhcC---CCEEEecCcCCCCC-----------ceeEEeCHHHHHH
Confidence            33556678999999999999 779999999999999999   99999997644443           34466 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCC
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV  186 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p  186 (394)
                      .....+...           +++.+|+||++.+++|+...+.+|.... +++.++ .+-.+---+.  +-|++   .+.|
T Consensus       178 ~~~~~l~~s-----------~~~~vl~eesi~G~ke~e~ev~rd~~~n-~ivvc~-men~dp~gvh--tgdsi---~vap  239 (400)
T COG0458         178 IIEEGLRAS-----------PVEEVLIEESIIGWKEFEYEVVRDGKDN-CIVVCN-MENLDPMGVH--TGDSI---TVAP  239 (400)
T ss_pred             HHHhccccC-----------ccccceeeeeecCceEEEEEEEEeCCCC-EEEEEe-CCcccccccc--cccee---eecc
Confidence            888876543           4579999999999999999999999875 555554 4433221111  11333   3445


Q ss_pred             CCCCCH--HHH-----HHHHHhCCCCcccHHHHHHHHHHHHHHhhcC---Ccceeeecceeec
Q 016159          187 FNGITD--EDA-----AKVVDGLAPKVADRNDAIEQVKKLYKLFCES---DCTLLEINPLAET  239 (394)
Q Consensus       187 ~~gl~~--~~a-----~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~---d~~~lEINPLvv~  239 (394)
                      ...+++  ++.     -+.++.+|..+...-          |+..+.   +...+|+||.+-.
T Consensus       240 aqtl~d~eyq~~r~~~~~iir~igi~G~~ni----------Q~av~~~~~~~~viEvNpRvSr  292 (400)
T COG0458         240 AQTLTDKEYQMLRDAAIKVIREIGIEGGCNI----------QFAVDPGGGELYVIEINPRVSR  292 (400)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhcccCCCce----------eEEEcCCCceEEEEEecCCcCc
Confidence            444444  222     234556665432222          222333   4578999999764

>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]

Probab=99.04  E-value=4.3e-11  Score=120.66  Aligned_cols=286  Identities=19%  Similarity=0.119  Sum_probs=194.4

Q ss_pred             CcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCC------Cee
Q 016159           70 KELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL------VNE  142 (394)
Q Consensus        70 ~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~------~~E  142 (394)
                      ...|.|++.+.+.|+|.       |-|.+. +..+..++.+.+.+....  -.+..| +..-..||+++.+      -.|
T Consensus        80 ~rsv~k~~m~~~k~~ki-------~lvAiiAegvpe~~~~kl~~~a~~k--~~~iiG-PaTvggVePg~fkignt~g~~d  149 (600)
T KOG1254|consen   80 TRSVAKPDMLALKRGKI-------GLVAIIAEGVPEADTRKLRAGAEVK--GVGIIG-PATVGGVEPGVFKIGNTGGMMD  149 (600)
T ss_pred             hhhhhcchHHHhhcCcc-------eEEEEEecCCcHHHHHHHHhccccc--cceEEe-eeeeccccCCccccCCCCcchh
Confidence            46789999888889984       778888 666666666666554320  011223 2356788999865      579


Q ss_pred             EEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCCCCCC----CHHHHHHHHHhCCCCcccHHHHHHHHHH
Q 016159          143 MYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGI----TDEDAAKVVDGLAPKVADRNDAIEQVKK  218 (394)
Q Consensus       143 ~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p~~gl----~~~~a~~l~~~lg~~~~~~~~l~~~l~~  218 (394)
                      .|+.+..+|..  .++.||..|||++|+...    +.++.-. |.+++    +.+-..-++.+  ++....+.+.++++.
T Consensus       150 nil~~klyR~G--sv~~vS~sGGmsnE~nn~----isrtt~g-~~egiaiggd~~pgSTl~dh--i~r~q~~~~vk~Iv~  220 (600)
T KOG1254|consen  150 NILNSKLYRPG--SVIYVSRSGGMSNELNNI----ISRTTDG-PYEGIAIGGDRYPGSTLIDH--IPREQHDPLVKFIVV  220 (600)
T ss_pred             hhhhhcccCCc--cEEEEecCCCcchhhhhh----hhheecc-ceeeeeccCCCccCchHhhh--hhhhhccChhheEEe
Confidence            99999999975  799999999999998653    2233211 11110    11222223332  223345678999999


Q ss_pred             HHHHhhcCCcceeeec-------ceeeccCCc---EEEeeceeecCcchhccchhhhc-----cCCC-----CC------
Q 016159          219 LYKLFCESDCTLLEIN-------PLAETSGKQ---LVAADAKLNFDDNAAFRQKEIFA-----LRDP-----TQ------  272 (394)
Q Consensus       219 L~~l~~e~d~~~lEIN-------PLvv~~~G~---~~alDaki~ldd~a~fR~~~~~~-----~~~~-----~~------  272 (394)
                      |+.++-+.+.+.+|+|       |+++-.-|.   .+-+|.....|+.+.|..-+-+.     +++.     ++      
T Consensus       221 Lgevgg~~ey~~~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vpesf~~l~~  300 (600)
T KOG1254|consen  221 LGEVGGDEEYTFLEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVPESFDALGA  300 (600)
T ss_pred             ehhhcccceeehhhhhhcCCccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccccCccchhhhhh
Confidence            9999999999999999       998854442   56788899999887665533221     1100     00      


Q ss_pred             ---------------CCH--------HhHhhhcCCCeEEccCCceeEEecCh-hHHHHHHHHHHHcCC--CccceeecCC
Q 016159          273 ---------------EDP--------REVAAAKADLNYIGLDGEIGCMVNGA-GLAMATMDIIKLHGG--TPANFLDVGG  326 (394)
Q Consensus       273 ---------------~~~--------~e~~a~~~~l~y~~l~G~Ig~~~nGa-Gl~m~t~D~i~~~gg--~~aNflD~gG  326 (394)
                                     ...        -|..+....+..++.+|+||+++.|+ |..+.+.|+....|-  +.+|+-.++|
T Consensus       301 ~i~~~~e~lv~~Grvvp~~Ev~pp~lp~d~saalklgllr~p~~i~t~Ia~~rGaeviYA~~p~~~~~a~elG~gg~~Sl  380 (600)
T KOG1254|consen  301 DIQETYEFLVPFGRVVPKTEVPPPGLPEDTSAALKLGLLRKPGRIWTSIAGGRGAEVIYADVPISLGYASELGNGGVYSL  380 (600)
T ss_pred             hhccchhcccccceecCcccCCCCCCChhhhhHhhhccccCCceEEEEecCCCCceeeecCchhhhhhHhhccccceEcc
Confidence                           000        01122233566788999999999999 999999999988775  6899999999


Q ss_pred             CCCHHHHHH----HHHHHh---cCCCccEEEEEccCCCCChHHHH---HHHHHHHHHcCC
Q 016159          327 NASEGQVVE----AFKILT---SDEKVKAILVNIFGGIMKCDVIA---SGIVNAAKQVSA  376 (394)
Q Consensus       327 ~a~~~~~~~----a~~~~l---~~~~v~~i~vni~ggi~~~d~vA---~gii~a~~~~~~  376 (394)
                      -+...++.+    -+++++   .|-+.++.+  +.|||+++...|   .+|+.++.+.+-
T Consensus       381 lw~~~~lp~Ya~kfie~~~m~~aDhgp~Vsg--a~ntI~~~ra~kdl~sslv~gLltigd  438 (600)
T KOG1254|consen  381 LWFQRRLPQYARKFIEICTMLTADHGPAVSG--AGNTIANFRAGKDLFSSLVRGLLTIGD  438 (600)
T ss_pred             ccccccchHHHHHHHHHHhhccCCCCceeEe--ccCceEEeccHHHHHHHHHHHHhhhhh
Confidence            999777654    466766   244555555  678999877665   889999887654

>PRK13789 phosphoribosylamine--glycine ligase; Provisional

Probab=99.03  E-value=2e-09  Score=110.83  Aligned_cols=104  Identities=15%  Similarity=0.147  Sum_probs=85.9

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      ++.-++..+|++|+++|||+|++..+++.+|+.+++++++   +|+||||....+  ||         ||.++ |.+|+.
T Consensus       104 ~le~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~~~~~~~---~PvVVKp~~~~~--gk---------GV~vv~~~eel~  169 (426)
T PRK13789        104 QVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEM---LPIVIKADGLAA--GK---------GVTVATEKKMAK  169 (426)
T ss_pred             HHHcCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHhcC---CCEEEEeCCCCC--CC---------cEEEECCHHHHH
Confidence            3446899999999999999999999999999999999998   999999986544  45         69999 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +++++++....       .|..-..++|||+++ +.|+.+.+..|..
T Consensus       170 ~a~~~~~~~~~-------~g~~~~~vlIEEfl~-G~E~Sv~~~~dg~  208 (426)
T PRK13789        170 RALKEIFKDKK-------FGQSGNQVVIEEFME-GQEASIFAISDGD  208 (426)
T ss_pred             HHHHHHHhhcc-------ccCCCCeEEEEECcC-CeEEEEEEEECCC
Confidence            99999874321       232224799999998 6899999988754

>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit

Probab=99.01  E-value=2.9e-09  Score=120.68  Aligned_cols=107  Identities=22%  Similarity=0.271  Sum_probs=86.9

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ..-+.+..|++|+++|||+|++..+++.+|+.++++++|   ||+||||..  |+.|+         |+.++ |++|+.+
T Consensus       124 ~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig---yPvIVKP~~--g~gg~---------Gv~iv~~~eeL~~  189 (1050)
T TIGR01369       124 KAEDRELFREAMKEIGEPVPESEIAHSVEEALAAAKEIG---YPVIVRPAF--TLGGT---------GGGIAYNREELKE  189 (1050)
T ss_pred             HhCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHhC---CCeEEECCC--CCCCC---------CeEEECCHHHHHH
Confidence            345778889999999999999999999999999999998   999999974  33344         57788 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC  161 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s  161 (394)
                      ++++.+...           ....++|||++++.+|+.+.+.+|...  .++.++
T Consensus       190 ~~~~~~~~s-----------~~~~vlVEe~I~G~~Eiev~v~rd~~g--~~~~~~  231 (1050)
T TIGR01369       190 IAERALSAS-----------PINQVLVEKSLAGWKEIEYEVMRDSND--NCITVC  231 (1050)
T ss_pred             HHHHHHhcC-----------CCCcEEEEEcccCceEEEEEEEEeCCC--CEEEEe
Confidence            988876432           125799999999779999999999754  344443

In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.

>PLN02735 carbamoyl-phosphate synthase

Probab=99.01  E-value=5e-09  Score=118.86  Aligned_cols=167  Identities=21%  Similarity=0.291  Sum_probs=112.7

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ...+....|++|+++|||+|++..+++.+|+.++++++|  .||+||||....||+           |+.++ |.+|+.+
T Consensus       141 ~~~DK~~~k~~l~~~GIpvp~~~~v~s~eea~~~~~~iG--~yPvVVKP~~~~GG~-----------Gv~iv~n~eEL~~  207 (1102)
T PLN02735        141 KAEDRELFKQAMEKIGLKTPPSGIATTLDECFEIAEDIG--EFPLIIRPAFTLGGT-----------GGGIAYNKEEFET  207 (1102)
T ss_pred             HhcCHHHHHHHHHHCCCCCCCeeEeCCHHHHHHHHHHhC--CCCEEEEeCCCCCCC-----------ceEEECCHHHHHH
Confidence            346778899999999999999999999999999999884  379999997644443           46688 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccc---cCCCeEEEEe
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAE---KYPNMIVKVP  183 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~---~~pd~i~~~~  183 (394)
                      ++++.+...           ....++|||++.+.+|+.+.+.+|....  ++.++.     +|.+..   ..-+.+.   
T Consensus       208 a~~~a~~~s-----------~~~~VLVEe~I~G~kE~ev~Vl~D~~g~--~i~v~~-----ie~~dp~gvh~G~s~~---  266 (1102)
T PLN02735        208 ICKAGLAAS-----------ITSQVLVEKSLLGWKEYELEVMRDLADN--VVIICS-----IENIDPMGVHTGDSIT---  266 (1102)
T ss_pred             HHHHHHhcC-----------CCCeEEEEEecCCCeEEEEEEEEcCCCC--EEEEee-----EEEEcCCccccCCEEE---
Confidence            998865322           1258999999996699999999996543  333331     333210   1113322   


Q ss_pred             cCCCCCCCHH-------HHHHHHHhCCCC-cccHHHHHHHHHHHHHHhhc---CCcceeeecceee
Q 016159          184 IDVFNGITDE-------DAAKVVDGLAPK-VADRNDAIEQVKKLYKLFCE---SDCTLLEINPLAE  238 (394)
Q Consensus       184 v~p~~gl~~~-------~a~~l~~~lg~~-~~~~~~l~~~l~~L~~l~~e---~d~~~lEINPLvv  238 (394)
                      +.|...+++.       .+.++++.||+. +...          .+++.+   .+..++||||.+-
T Consensus       267 vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~n----------Vqf~l~~~~g~~~ViEVNPR~s  322 (1102)
T PLN02735        267 VAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSN----------VQFAVNPVDGEVMIIEMNPRVS  322 (1102)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceE----------EEEEEECCCCcEEEEEecCCCC
Confidence            2343335542       344556777763 3100          123332   3577999999875

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=99.01  E-value=2.3e-08  Score=100.19  Aligned_cols=100  Identities=16%  Similarity=0.208  Sum_probs=81.9

Q ss_pred             hccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159           26 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV  104 (394)
Q Consensus        26 ~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~  104 (394)
                      -+..-+++..|++|+++|||+|++..+.+.+++.++++++|   +|+|+||... |..|+         ||.++ |++|+
T Consensus        93 ~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g---~P~vvKp~~~-g~~g~---------Gv~~v~~~~el  159 (352)
T TIGR01161        93 LAIIQDRLTQKQFLQKLGLPVPPFLVIKDEEELDAALQELG---FPVVLKARTG-GYDGR---------GQYRIRNEADL  159 (352)
T ss_pred             HHHhcCHHHHHHHHHHcCCCCCCccEeCCHHHHHHHHHHcC---CCEEEEeCCC-CCCCC---------CEEEECCHHHH
Confidence            34556888999999999999999999999999999999998   9999999642 11244         68888 99999


Q ss_pred             HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                      .++++++.            .   ..++||||++.+.|+.+.+.++...
T Consensus       160 ~~a~~~~~------------~---~~~lvEe~I~~~~E~sv~~~~~~~G  193 (352)
T TIGR01161       160 PQAAKELG------------D---RECIVEEFVPFERELSVIVARSADG  193 (352)
T ss_pred             HHHHHhcC------------C---CcEEEEecCCCCeEEEEEEEEcCCC
Confidence            98887742            1   2699999999889998888776543

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>COG0439 AccC Biotin carboxylase [Lipid metabolism]

Probab=99.00  E-value=2.8e-09  Score=109.61  Aligned_cols=173  Identities=21%  Similarity=0.263  Sum_probs=115.6

Q ss_pred             CCHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~--~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      =++..+|+++++.|+|++++.-  +.+.+|+.++++++|   |||+|||..  ||-|+         |++++ +.+++.+
T Consensus       114 gdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iG---yPVivKa~~--GgGg~---------G~r~v~~~~el~~  179 (449)
T COG0439         114 GDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIG---YPVIVKAAA--GGGGR---------GMRVVRNEEELEA  179 (449)
T ss_pred             hhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcC---CCEEEEECC--CCCcc---------cEEEECCHHHHHH
Confidence            4688999999999999999873  466799999999998   999999965  44344         79999 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCC
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV  186 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p  186 (394)
                      ++..+.+...     ...|.  ..+++|+++...+-+.+.+.-|...  -+|-.+ +=.+.   +++++...+...|. |
T Consensus       180 a~~~~~~ea~-----~~fg~--~~v~iEk~i~~~rhievqv~gD~~g--~~i~l~-eRdcs---iqrr~qkvieeaps-p  245 (449)
T COG0439         180 AFEAARGEAE-----AAFGN--PRVYLEKFIEGPRHIEVQVLGDGHG--NVIHLG-ERDCS---IQRRHQKVIEEAPS-P  245 (449)
T ss_pred             HHHHHHHHHH-----HhcCC--CcEEeeeeccCCceEEEEEEEcCcc--cEEEEE-eccCC---CcCCccceeeecCC-C
Confidence            9999876542     01232  3599999998777888999999875  344444 22233   35555333333332 2


Q ss_pred             CCCCCHHHHHHH--------HHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccC
Q 016159          187 FNGITDEDAAKV--------VDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG  241 (394)
Q Consensus       187 ~~gl~~~~a~~l--------~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~  241 (394)
                        .+++ +.+..        ++.+|+.+      +.++.-|+..  +.+..++|+||.+....
T Consensus       246 --~~~~-e~r~~i~~~a~~a~~~~gY~g------agtvEfl~~~--~~~~yfiEmN~Rlqveh  297 (449)
T COG0439         246 --LLTE-ELREKIGEAAVRAAKLIGYRG------AGTVEFLYDS--NGEFYFIEMNTRLQVEH  297 (449)
T ss_pred             --CCCH-HHHHHHHHHHHHHHHhcCCCC------CceEEEEEeC--CCCEEEEEEecccccCc
Confidence              2443 33332        33334432      1112222222  35788999999988654

>PRK08462 biotin carboxylase; Validated

Probab=99.00  E-value=5.7e-09  Score=107.77  Aligned_cols=173  Identities=19%  Similarity=0.274  Sum_probs=110.5

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE  103 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee  103 (394)
                      +..-+++..|++|+++|||+|++.  .+.+.+++.++++++|   ||+||||....|  |+         ||.++ |++|
T Consensus       113 ~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g---~PvvvKP~~g~g--s~---------Gv~~v~~~~e  178 (445)
T PRK08462        113 ALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIG---YPVILKAAAGGG--GR---------GMRVVEDESD  178 (445)
T ss_pred             HHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcC---CCEEEEeCCCCC--CC---------CeEEECCHHH
Confidence            344688999999999999999865  6789999999999998   999999965333  44         69899 9999


Q ss_pred             HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEe
Q 016159          104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP  183 (394)
Q Consensus       104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~  183 (394)
                      +.+++........  .+   .+.  ..++|||+++.++|+.+.+..|...  -++.++ .....+   ...++..+ .. 
T Consensus       179 L~~~~~~~~~~~~--~~---~~~--~~vlvEe~i~g~~e~~v~v~~~~~g--~~~~~g-~~~~~~---~~~~~~~~-~~-  243 (445)
T PRK08462        179 LENLYLAAESEAL--SA---FGD--GTMYMEKFINNPRHIEVQILGDKHG--NVIHVG-ERDCSL---QRRHQKLI-EE-  243 (445)
T ss_pred             HHHHHHHHHHHHH--hc---cCC--CcEEEeccCCCCeEEEEEEEECCCC--CEEEEE-eccccc---eecccceE-EE-
Confidence            9988866433211  00   111  3699999998788998999888643  344443 211222   11121121 11 


Q ss_pred             cCCCCCCCH-------HHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc--CCcceeeecceeec
Q 016159          184 IDVFNGITD-------EDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEINPLAET  239 (394)
Q Consensus       184 v~p~~gl~~-------~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e--~d~~~lEINPLvv~  239 (394)
                       .|...+++       ..+.++++.+|+.+...          .+++.+  .+..++||||....
T Consensus       244 -~p~~~l~~~~~~~i~~~a~~~~~alg~~G~~~----------ve~~~~~~g~~~viEiNpR~~~  297 (445)
T PRK08462        244 -SPAVVLDEKTRERLHETAIKAAKAIGYEGAGT----------FEFLLDSNLDFYFMEMNTRLQV  297 (445)
T ss_pred             -cCCCCCCHHHHHHHHHHHHHHHHHcCCCCcce----------EEEEEeCCCCEEEEEEECCcCc
Confidence             23222343       23445566677643100          133333  25779999998753

>PRK14569 D-alanyl-alanine synthetase A; Provisional

Probab=98.99  E-value=1.1e-08  Score=100.18  Aligned_cols=95  Identities=15%  Similarity=0.152  Sum_probs=74.3

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      .+..+++.+|++|+++|||+|++..+.+..   ...+.++   ||+||||..  +|.++         ||.++ |++|+.
T Consensus        94 ~l~~DK~~~k~~l~~~gIptp~~~~~~~~~---~~~~~~~---~P~vVKP~~--ggss~---------Gv~~v~~~~eL~  156 (296)
T PRK14569         94 VITMDKMISKEILMHHRMPTPMAKFLTDKL---VAEDEIS---FPVAVKPSS--GGSSI---------ATFKVKSIQELK  156 (296)
T ss_pred             HHHHCHHHHHHHHHHCCCCCCCeEEEchhh---hhHhhcC---CCEEEEeCC--CCCCc---------CeEEcCCHHHHH
Confidence            355789999999999999999998876422   2346677   999999954  55555         69899 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                      ++.++...              ...++||||++ ++|+.+++..|...
T Consensus       157 ~a~~~~~~--------------~~~~lvEefI~-G~E~tv~vl~~~~~  189 (296)
T PRK14569        157 HAYEEASK--------------YGEVMIEQWVT-GKEITVAIVNDEVY  189 (296)
T ss_pred             HHHHHHHh--------------cCCEEEEcccc-cEEEEEEEECCcCc
Confidence            88877531              13689999998 79999999876543

>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=98.99  E-value=4.4e-09  Score=119.46  Aligned_cols=166  Identities=20%  Similarity=0.292  Sum_probs=112.7

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ...+.+..|++|+++|||+|++..+++.+|+.++++++|   ||+||||..  |..|+         |+.++ |++|+.+
T Consensus       125 ~~~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig---~PvVVKP~~--g~gg~---------Gv~iv~~~eeL~~  190 (1066)
T PRK05294        125 KAEDRELFKEAMKKIGLPVPRSGIAHSMEEALEVAEEIG---YPVIIRPSF--TLGGT---------GGGIAYNEEELEE  190 (1066)
T ss_pred             HhcCHHHHHHHHHHCCcCCCCeeeeCCHHHHHHHHHHcC---CCeEEEcCC--CCCCC---------CeEEECCHHHHHH
Confidence            445778889999999999999999999999999999998   999999974  33344         57788 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEE---Ee
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVK---VP  183 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~---~~  183 (394)
                      ++++.+...           ....++|||++++.+|+.+.+.+|....  ++.+..     +|...   |..++.   ..
T Consensus       191 a~~~~~~~s-----------~~~~vlvEe~I~G~~Eisv~v~rd~~g~--~~~~~~-----~e~~d---p~gih~g~~~~  249 (1066)
T PRK05294        191 IVERGLDLS-----------PVTEVLIEESLLGWKEYEYEVMRDKNDN--CIIVCS-----IENID---PMGVHTGDSIT  249 (1066)
T ss_pred             HHHHHHhhC-----------CCCeEEEEEcccCceEEEEEEEEcCCCC--EEEEee-----eeecc---ccceecCCeEE
Confidence            988765321           1247999999997799999999987643  443331     22221   111110   12


Q ss_pred             cCCCCCCCH-------HHHHHHHHhCCCC-cccHHHHHHHHHHHHHHhhc---CCcceeeecceee
Q 016159          184 IDVFNGITD-------EDAAKVVDGLAPK-VADRNDAIEQVKKLYKLFCE---SDCTLLEINPLAE  238 (394)
Q Consensus       184 v~p~~gl~~-------~~a~~l~~~lg~~-~~~~~~l~~~l~~L~~l~~e---~d~~~lEINPLvv  238 (394)
                      +.|...+++       +.|.++++.||+. +...          .+++.+   .+..++||||.+-
T Consensus       250 ~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~----------vef~~~~~~g~~~viEiNPR~~  305 (1066)
T PRK05294        250 VAPAQTLTDKEYQMLRDASIAIIREIGVETGGCN----------VQFALNPKDGRYIVIEMNPRVS  305 (1066)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceE----------EEEEEECCCCcEEEEEeecCCC
Confidence            234333454       3445667777776 4210          123333   2467899999864

>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis

Probab=98.98  E-value=1.7e-08  Score=91.51  Aligned_cols=111  Identities=17%  Similarity=0.217  Sum_probs=81.4

Q ss_pred             HHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhccccc
Q 016159           39 MAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILV  117 (394)
Q Consensus        39 L~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~  117 (394)
                      |++.|||+|++..+.+.+|+..++.++|   +|+|+|+.. .|+.||         |..+. |.+++.++++.+- .   
T Consensus         1 l~~~gip~~~~~~i~~~~~l~~a~~~iG---~P~vlK~~~-~GYDGk---------Gq~~i~~~~dl~~a~~~~~-~---   63 (172)
T PF02222_consen    1 LDELGIPTAPYATIDSLEDLEEAAESIG---FPAVLKTRR-GGYDGK---------GQFVIRSEEDLEKAWQELG-G---   63 (172)
T ss_dssp             HHHTT--B-EEEEESSHHHHHHHHHHHT---SSEEEEESS-SSCTTT---------TEEEESSGGGHHHHHHHTT-T---
T ss_pred             CcccCCCCCCeEEECCHHHHHHHHHHcC---CCEEEEccC-cCcCCC---------ccEEECCHHHHHHHHHhcC-C---
Confidence            6789999999999999999999999999   999999753 367777         56666 9999999888871 1   


Q ss_pred             ccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCCC
Q 016159          118 TKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF  187 (394)
Q Consensus       118 ~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p~  187 (394)
                                 ..+++|++++..+|+.+-+.+|...  -+..+-.     +|.+.+   +.+....+.|.
T Consensus        64 -----------~~~ilE~~v~f~~EiSvivaR~~~G--~~~~yp~-----~en~~~---~~il~~s~~Pa  112 (172)
T PF02222_consen   64 -----------GPCILEEFVPFDREISVIVARDQDG--EIRFYPP-----VENVHR---DGILHESIAPA  112 (172)
T ss_dssp             -----------SCEEEEE---ESEEEEEEEEEETTS--EEEEEEE-----EEEEEE---TTEEEEEEESC
T ss_pred             -----------CcEEEEeccCCcEEEEEEEEEcCCC--CEEEEcC-----ceEEEE---CCEEEEEECCC
Confidence                       3789999999999999999888764  4666652     455443   45566656664

This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....

>PRK00885 phosphoribosylamine--glycine ligase; Provisional

Probab=98.97  E-value=5.6e-09  Score=107.04  Aligned_cols=103  Identities=25%  Similarity=0.287  Sum_probs=84.8

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ..-+++..|++|+++|||+|++..+.+.+++.+++++++   +|+|+||....|  |+         ||.++ |.+|+.+
T Consensus        99 ~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~---~P~VvKP~~~~g--s~---------Gv~~v~~~~el~~  164 (420)
T PRK00885         99 LEGSKAFAKDFMARYGIPTAAYETFTDAEEALAYLDEKG---APIVVKADGLAA--GK---------GVVVAMTLEEAKA  164 (420)
T ss_pred             HHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcC---CCEEEEeCCCCC--CC---------cEEEeCCHHHHHH
Confidence            446788999999999999999999999999999999998   999999975443  33         69999 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      ++++++....       .+..-..++||||++ +.|+.+.+..|..
T Consensus       165 ~~~~~~~~~~-------~~~~~~~vlvEe~i~-G~E~sv~~~~~g~  202 (420)
T PRK00885        165 AVDDMLAGNK-------FGDAGARVVIEEFLD-GEEASFFAFVDGE  202 (420)
T ss_pred             HHHHHhhccc-------ccCCCCeEEEEEccC-CcEEEEEEEECCC
Confidence            9999865321       122225799999998 6999999998754

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=98.96  E-value=4.8e-08  Score=98.76  Aligned_cols=105  Identities=18%  Similarity=0.199  Sum_probs=84.5

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      +..-+++..|++|+++|||+|++..+.+.+++.++++++|   +|+|+||... |..||         |+.++ |.+|+.
T Consensus        96 ~~~~dK~~~k~~l~~~Gip~p~~~~v~s~~~l~~~~~~~g---~P~vlKp~~~-g~~g~---------Gv~~v~~~~el~  162 (372)
T PRK06019         96 AIAQDRLTEKQFLDKLGIPVAPFAVVDSAEDLEAALADLG---LPAVLKTRRG-GYDGK---------GQWVIRSAEDLE  162 (372)
T ss_pred             HHhcCHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcC---CcEEEEeCCC-CcCCC---------CeEEECCHHHHH
Confidence            4556788899999999999999999999999999999998   9999999632 22345         68888 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC  161 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s  161 (394)
                      ++++.+.            .   ..++||||++.+.|+.+.+.+|...  -++.+.
T Consensus       163 ~a~~~~~------------~---~~~ivEe~I~~~~E~sv~~~~~~~G--~~~~~p  201 (372)
T PRK06019        163 AAWALLG------------S---VPCILEEFVPFEREVSVIVARGRDG--EVVFYP  201 (372)
T ss_pred             HHHHhcC------------C---CCEEEEecCCCCeEEEEEEEECCCC--CEEEeC
Confidence            8887751            1   3689999999889999988887653  344443

>PRK14572 D-alanyl-alanine synthetase A; Provisional

Probab=98.95  E-value=2.2e-08  Score=100.42  Aligned_cols=96  Identities=16%  Similarity=0.159  Sum_probs=76.4

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeC------CHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVA------SVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-   99 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~------s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-   99 (394)
                      .+..+++.+|++|+++|||+|++..+.      +.+++.+..+.++   +|+||||..  +|.++         ||.++ 
T Consensus       126 ~i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~~~~~~~~~~~~~~l~---~PvvVKP~~--ggsS~---------GV~~v~  191 (347)
T PRK14572        126 ALAMDKTRANQIFLQSGQKVAPFFELEKLKYLNSPRKTLLKLESLG---FPQFLKPVE--GGSSV---------STYKIT  191 (347)
T ss_pred             HHHhCHHHHHHHHHHcCCCCCCEEEEEccccccChHHHHHHHHhcC---CCEEEecCC--CCCCC---------CEEEEC
Confidence            455789999999999999999998874      3445555566787   999999954  44444         69889 


Q ss_pred             CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159          100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD  150 (394)
Q Consensus       100 s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D  150 (394)
                      |.+|+.++++.++..          +   ..++||||++ ++|+.+++..+
T Consensus       192 ~~~el~~a~~~~~~~----------~---~~vlVEefI~-G~E~sv~vi~~  228 (347)
T PRK14572        192 NAEQLMTLLALIFES----------D---SKVMSQSFLS-GTEVSCGVLER  228 (347)
T ss_pred             CHHHHHHHHHHHHhc----------C---CCEEEEcCcc-cEEEEEEEEeC
Confidence            999999998887532          1   3689999998 79999999865

>PRK13790 phosphoribosylamine--glycine ligase; Provisional

Probab=98.94  E-value=7.8e-09  Score=104.86  Aligned_cols=100  Identities=21%  Similarity=0.228  Sum_probs=84.4

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      ++.-++..+|++|+++|||+|++..+++.+++.++++++|   +|+|+||....+  ||         ||.++ |.+|+.
T Consensus        63 ~l~~dK~~~k~~l~~~gIptp~~~~~~~~~ea~~~~~~~g---~PvVvKp~~~~~--gk---------GV~iv~~~~el~  128 (379)
T PRK13790         63 QIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCE---LPVVVKKDGLAA--GK---------GVIIADTIEAAR  128 (379)
T ss_pred             HHhCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHhcC---CCEEEEeCCCCC--CC---------CEEEECCHHHHH
Confidence            4567899999999999999999999999999999999998   999999976443  45         69999 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      ++++++++..        ..   ..++|||+++ +.|+.+.+..|..
T Consensus       129 ~a~~~~~~~~--------~~---~~vlvEe~i~-G~E~sv~~~~~g~  163 (379)
T PRK13790        129 SAIEIMYGDE--------EE---GTVVFETFLE-GEEFSLMTFVNGD  163 (379)
T ss_pred             HHHHHHHhcC--------CC---CeEEEEEccc-CceEEEEEEeeCC
Confidence            9999876432        11   3799999998 6899999988854

>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed

Probab=98.94  E-value=1.8e-08  Score=100.41  Aligned_cols=95  Identities=19%  Similarity=0.188  Sum_probs=77.1

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHH----HHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDE----VKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE  102 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~ee----a~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e  102 (394)
                      ...+++.+|++|+++|||+|++..+.+.++    ...+.+.++   +|+||||..  +|.+.         ||.++ +.+
T Consensus       120 l~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~~~---~P~vVKP~~--~gsS~---------Gv~~v~~~~  185 (333)
T PRK01966        120 LSMDKILTKRLLAAAGIPVAPYVVLTRGDWEEASLAEIEAKLG---LPVFVKPAN--LGSSV---------GISKVKNEE  185 (333)
T ss_pred             HHhCHHHHHHHHHHcCCCCCCEEEEeccccchhhHHHHHHhcC---CCEEEEeCC--CCCcc---------CEEEECCHH
Confidence            457899999999999999999999876654    245566787   999999954  44344         79899 999


Q ss_pred             HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159          103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD  150 (394)
Q Consensus       103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D  150 (394)
                      ++.+++++.+..          +   ..++||++++ |+|+.+++..|
T Consensus       186 el~~a~~~~~~~----------~---~~vlvEefI~-G~E~~v~vl~~  219 (333)
T PRK01966        186 ELAAALDLAFEY----------D---RKVLVEQGIK-GREIECAVLGN  219 (333)
T ss_pred             HHHHHHHHHHhc----------C---CcEEEEcCcC-CEEEEEEEECC
Confidence            999999887532          1   4799999998 79999999986

>PLN02735 carbamoyl-phosphate synthase

Probab=98.93  E-value=8.4e-09  Score=117.06  Aligned_cols=103  Identities=15%  Similarity=0.090  Sum_probs=86.0

Q ss_pred             hccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159           26 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV  104 (394)
Q Consensus        26 ~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~  104 (394)
                      -.+.-+....|++|.++|||+|++..+++.+|+.++++++|   ||++|||..  ++-|+         |+.++ |.+|+
T Consensus       697 i~i~~DK~~~k~~l~~~GIp~p~~~~v~s~eea~~~a~~iG---yPvvVKP~~--g~gG~---------G~~iV~~~eeL  762 (1102)
T PLN02735        697 IDAAEDRERFNAILNELKIEQPKGGIARSEADALAIAKRIG---YPVVVRPSY--VLGGR---------AMEIVYSDDKL  762 (1102)
T ss_pred             HHHhcCHHHHHHHHHHcCCCCCCeeEeCCHHHHHHHHHhcC---CCeEEEeCC--CCCCC---------cEEEECCHHHH
Confidence            34557888999999999999999999999999999999998   999999965  33344         68899 99999


Q ss_pred             HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                      .+++++.....        .+   ..++||++++.++|+.+.+..|...
T Consensus       763 ~~al~~a~~~~--------~~---~~vlVEefI~~g~Ei~V~vl~D~~G  800 (1102)
T PLN02735        763 KTYLETAVEVD--------PE---RPVLVDKYLSDATEIDVDALADSEG  800 (1102)
T ss_pred             HHHHHHHHHhc--------CC---CCEEEEEecCCcEEEEEEEEECCCC
Confidence            99988875421        11   3699999998789999999998653

>PRK05586 biotin carboxylase; Validated

Probab=98.93  E-value=5.9e-08  Score=100.40  Aligned_cols=172  Identities=19%  Similarity=0.246  Sum_probs=113.0

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKG--LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE  103 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~--~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee  103 (394)
                      ...-+++..|++|+++|||+|++  ..+.+.+|+.++++++|   ||+||||..  |+.|+         ||.++ |++|
T Consensus       111 ~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~ig---yPvvvKP~~--gggg~---------Gv~~v~~~~e  176 (447)
T PRK05586        111 ELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIG---YPVMVKASA--GGGGR---------GIRIVRSEEE  176 (447)
T ss_pred             HhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcC---CCEEEEECC--CCCCC---------eeEEECCHHH
Confidence            34467899999999999999998  46789999999999998   999999954  43344         68899 9999


Q ss_pred             HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEe
Q 016159          104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP  183 (394)
Q Consensus       104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~  183 (394)
                      +.+++++.......     ..+.  ..++|||+++..+|+.+.+..|...  .++.++ .-...   ...++ .++... 
T Consensus       177 l~~a~~~~~~~~~~-----~~~~--~~vivEe~i~g~~ei~v~v~~d~~G--~~~~~~-~~~~~---~~~~~-~~~~~~-  241 (447)
T PRK05586        177 LIKAFNTAKSEAKA-----AFGD--DSMYIEKFIENPKHIEFQILGDNYG--NVVHLG-ERDCS---LQRRN-QKVLEE-  241 (447)
T ss_pred             HHHHHHHHHHHHHH-----hcCC--CeEEEEecCCCCeEEEEEEEECCCC--CEEEEe-ceecc---eEecc-cceEEE-
Confidence            99988876543210     0121  3699999999778998999988653  455543 21111   12112 223333 


Q ss_pred             cCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc--CCcceeeecceee
Q 016159          184 IDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEINPLAE  238 (394)
Q Consensus       184 v~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e--~d~~~lEINPLvv  238 (394)
                       .|...++++       .+.++++.||+.+.-.          .+++.+  .+..++||||..-
T Consensus       242 -~p~~~l~~~~~~~l~~~a~~i~~aLg~~g~~~----------vEf~~~~~g~~~~iEvNpR~~  294 (447)
T PRK05586        242 -APSPVMTEELRKKMGEIAVKAAKAVNYKNAGT----------IEFLLDKDGNFYFMEMNTRIQ  294 (447)
T ss_pred             -cCCCCCCHHHHHHHHHHHHHHHHHcCCcceeE----------EEEEEcCCCCEEEEEEECCCC
Confidence             232225553       3456667777654210          122332  3467999999974

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=98.91  E-value=7e-08  Score=102.91  Aligned_cols=100  Identities=20%  Similarity=0.256  Sum_probs=82.6

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      .+.-+++..|++|+++|||+|++..+.+.+++.++++++|   ||+|+||... |..|+         |+.++ |.+|+.
T Consensus       117 ~i~~DK~~~K~~l~~~GIptp~~~~v~~~~el~~~~~~ig---~P~VvKP~~g-gs~g~---------Gv~~v~~~~eL~  183 (577)
T PLN02948        117 RIIQDKYAQKVHFSKHGIPLPEFMEIDDLESAEKAGDLFG---YPLMLKSRRL-AYDGR---------GNAVAKTEEDLS  183 (577)
T ss_pred             HHhcCHHHHHHHHHHCCcCCCCeEEeCCHHHHHHHHHhcC---CcEEEEeCCC-CCCCC---------CeEEECCHHHHH
Confidence            4456899999999999999999999999999999999998   9999999642 11345         58788 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      ++++.+...          .   ..++||+|++..+|+.+.+.+|..
T Consensus       184 ~a~~~~~~~----------~---~~vlvEefI~~~~EisV~v~r~~~  217 (577)
T PLN02948        184 SAVAALGGF----------E---RGLYAEKWAPFVKELAVMVARSRD  217 (577)
T ss_pred             HHHHHhhCC----------C---CcEEEEecCCCCeEEEEEEEECCC
Confidence            988886421          1   368999999988999999998754

>PRK08463 acetyl-CoA carboxylase subunit A; Validated

Probab=98.91  E-value=4.3e-08  Score=102.42  Aligned_cols=173  Identities=20%  Similarity=0.273  Sum_probs=111.7

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceee---CCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAV---ASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE  102 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~---~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e  102 (394)
                      +..-+++..|++|.++|||+|++...   .+.+++.++++++|   ||+|+||..  |+-|+         ||+++ |++
T Consensus       110 ~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~ig---yPvvvKP~~--ggGg~---------Gv~iv~~~~  175 (478)
T PRK08463        110 RKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIG---YPVILKASG--GGGGR---------GIRVVHKEE  175 (478)
T ss_pred             HhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhC---CCEEEEeCC--CCCCC---------ceEEeCCHH
Confidence            34467889999999999999886543   57899999999998   999999964  33345         69999 999


Q ss_pred             HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEE
Q 016159          103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKV  182 (394)
Q Consensus       103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~  182 (394)
                      |+.++++.......  ..   .+.  ..++||+|++.++|+.+.+..|...  .++.++ .-...+   .++++. +..+
T Consensus       176 eL~~a~~~~~~~a~--~~---~~~--~~vlvEefI~~~~~iev~v~~d~~g--~v~~~~-er~~s~---~~~~~~-~ie~  241 (478)
T PRK08463        176 DLENAFESCKREAL--AY---FNN--DEVFMEKYVVNPRHIEFQILGDNYG--NIIHLC-ERDCSI---QRRHQK-VIEI  241 (478)
T ss_pred             HHHHHHHHHHHHHH--Hh---cCC--CcEEEEecCCCCeEEEEEEEEcCCC--CEEEEe-ccCCcc---ccccCc-eEEE
Confidence            99998876532111  00   111  4799999998788888888888643  455444 222222   233332 3222


Q ss_pred             ecCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhh--cCCcceeeecceeec
Q 016159          183 PIDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFC--ESDCTLLEINPLAET  239 (394)
Q Consensus       183 ~v~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~--e~d~~~lEINPLvv~  239 (394)
                        .|...+++.       .+.++++.+|+.+.-  .        .+++.  +.+..++||||.+..
T Consensus       242 --~P~~~l~~~~~~~i~~~a~~~~~alg~~g~~--~--------vEf~~~~~~~~y~iEiN~R~~~  295 (478)
T PRK08463        242 --APCPSISDNLRKTMGVTAVAAAKAVGYTNAG--T--------IEFLLDDYNRFYFMEMNTRIQV  295 (478)
T ss_pred             --CCCCCCCHHHHHHHHHHHHHHHHHcCCCCce--e--------EEEEEcCCCCEEEEEEECCcCC
Confidence              333235553       334566677765410  0        12333  235789999999754

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=98.90  E-value=7.2e-08  Score=97.23  Aligned_cols=102  Identities=19%  Similarity=0.211  Sum_probs=80.2

Q ss_pred             cCCCHHHHHHHH-HHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           28 LNIHEYQGAELM-AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        28 m~L~E~~aK~lL-~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      +..+++..|+++ +++|||+|++..+++.+++.++++++|   ||+|+||..  |+.|+         ||.++ |.+++.
T Consensus        97 ~~~dK~~~~~~~~~~~gip~p~~~~~~~~~~~~~~~~~~g---~P~VvKP~~--g~~s~---------gv~~v~~~~el~  162 (380)
T TIGR01142        97 LTMNREGIRRLAAEELGLPTSRYMFADSLDELREAVEKIG---YPCVVKPVM--SSSGK---------GQSVVRGPEDIE  162 (380)
T ss_pred             HhhCHHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcC---CCEEEEECC--CcCCC---------CeEEECCHHHHH
Confidence            445778888875 899999999999999999999999998   999999964  33344         69999 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      ++++.+.....        . .-..++||||++.+.|+.+.+.++..
T Consensus       163 ~~~~~~~~~~~--------~-~~~~~ivEe~i~~~~E~sv~~~~~~~  200 (380)
T TIGR01142       163 KAWEYAQEGAR--------G-GAGRVIVEEFIDFDYEITLLTVRHVD  200 (380)
T ss_pred             HHHHHHHhhcc--------C-CCCCEEEEEecCCCEEEEEEEEEcCC
Confidence            99988753211        0 11479999999977898887776543

This enzyme is an alternative to PurN (TIGR00639)

>TIGR02712 urea_carbox urea carboxylase

Probab=98.90  E-value=3.2e-08  Score=113.13  Aligned_cols=112  Identities=18%  Similarity=0.115  Sum_probs=86.8

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCC-ceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV  104 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~-~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~  104 (394)
                      +..-+++.+|++|+++|||+|+ +.++++.+|+.++++++|   ||+||||...  +-|+         ||.++ |.+|+
T Consensus       110 ~~~~DK~~ar~ll~~~GVPt~p~~~lv~s~dea~~~a~~ig---yPvVVKP~~g--gGG~---------GV~iv~~~eEL  175 (1201)
T TIGR02712       110 RKFGLKHTARELAEAAGVPLLPGTGLLSSLDEALEAAKEIG---YPVMLKSTAG--GGGI---------GMQKCDSAAEL  175 (1201)
T ss_pred             HHhcCHHHHHHHHHHCCCCCCCceeecCCHHHHHHHHHhcC---CeEEEEECCC--CCCC---------CEEEECCHHHH
Confidence            3446889999999999999876 557899999999999998   9999999753  3345         69999 99999


Q ss_pred             HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159          105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC  161 (394)
Q Consensus       105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s  161 (394)
                      .+++++......  .   ..+  -.+++||||++.++|+.+.+..|...  -++.++
T Consensus       176 ~~a~~~~~~~~~--~---~f~--~~~vlVEefI~g~~eveV~v~~Dg~g--~vv~lg  223 (1201)
T TIGR02712       176 AEAFETVKRLGE--S---FFG--DAGVFLERFVENARHVEVQIFGDGKG--KVVALG  223 (1201)
T ss_pred             HHHHHHHHHHHH--H---hcC--CCcEEEEecCCCCEEEEEEEEECCCC--eEEEee
Confidence            998888743221  0   012  14699999998889999999998764  455553

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PRK06524 biotin carboxylase-like protein; Validated

Probab=98.87  E-value=8.5e-08  Score=99.45  Aligned_cols=97  Identities=19%  Similarity=0.259  Sum_probs=79.6

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHH--hCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQD--AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK  101 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~--~~s~eea~~~a~~--lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~  101 (394)
                      .+..++..+|++++++|||+|++..  +.+.+++..+++.  +|   +|+||||.  .|+.|+         |+.++ +.
T Consensus       138 ai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~eel~~~~~~~~IG---yPvVVKP~--~GGSS~---------GV~~Vkn~  203 (493)
T PRK06524        138 HRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDELSALAHGAGLG---DDLVVQTP--YGDSGS---------TTFFVRGQ  203 (493)
T ss_pred             HHhCCHHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHhccCC---CcEEEEEC--CCCCCc---------CEEEeCCH
Confidence            3457899999999999999999988  4677777777765  88   99999997  366676         79899 99


Q ss_pred             HHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       102 ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +|+.++++++.+.              ..++||++++ +.|+.|.+.+|..
T Consensus       204 eELe~a~~~~~~~--------------~~viVEe~I~-GrEitVev~vd~d  239 (493)
T PRK06524        204 RDWDKYAGGIVGQ--------------PEIKVMKRIR-NVEVCIEACVTRH  239 (493)
T ss_pred             HHHHHHHHHhcCC--------------CCEEEEeccC-cEEEEEEEEEeCC
Confidence            9999988776421              4689999997 8999998888864

>PRK10446 ribosomal protein S6 modification protein; Provisional

Probab=98.86  E-value=2.2e-08  Score=98.15  Aligned_cols=99  Identities=20%  Similarity=0.278  Sum_probs=78.2

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh-CCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV  104 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~l-g~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~  104 (394)
                      ++..+++.++++|+++|||+|++.++.+++++.++++++ +   +|+|+||..  |+.|+         ||.+. +.+++
T Consensus        95 ~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~---~P~VvKP~~--g~~g~---------GV~~v~~~~~~  160 (300)
T PRK10446         95 ARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGG---APLVVKLVE--GTQGI---------GVVLAETRQAA  160 (300)
T ss_pred             HhhhcHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHhCC---CCEEEEECC--CCCcc---------cEEEEcCHHHH
Confidence            455688999999999999999999999999998888887 4   899999964  44454         68888 88887


Q ss_pred             HHHHHHHhcccccccccCCCCcccceEEEEeeeC--CCeeEEEEEEEecc
Q 016159          105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLS--LVNEMYFAIMLDRK  152 (394)
Q Consensus       105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~--~~~E~ylgi~~Dr~  152 (394)
                      ..+.+.....          +   ..++||||++  .+.|+.+.+..++.
T Consensus       161 ~~~~~~~~~~----------~---~~~lvQe~I~~~~g~d~rv~vig~~~  197 (300)
T PRK10446        161 ESVIDAFRGL----------N---AHILVQEYIKEAQGCDIRCLVVGDEV  197 (300)
T ss_pred             HHHHHHHHhc----------C---CCEEEEeeeccCCCceEEEEEECCEE
Confidence            7766654211          1   3699999996  47999999875543

>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6

Probab=98.86  E-value=7.5e-08  Score=89.58  Aligned_cols=87  Identities=24%  Similarity=0.320  Sum_probs=66.1

Q ss_pred             HHHHcCCCCCCceeeCCHHHH----HHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHh
Q 016159           38 LMAKYGINVPKGLAVASVDEV----KKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKML  112 (394)
Q Consensus        38 lL~~~GIpvp~~~~~~s~eea----~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l  112 (394)
                      ||+++|||||++.++...+..    .+....++   +|++|||..  +|.+.         ||..+ |.+++.++.++.+
T Consensus         1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~---~P~~VKP~~--~GsS~---------Gi~~v~~~~el~~ai~~~~   66 (203)
T PF07478_consen    1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDLG---FPLFVKPAS--EGSSI---------GISKVHNEEELEEAIEKAF   66 (203)
T ss_dssp             HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHHS---SSEEEEESS--TSTTT---------TEEEESSHHHHHHHHHHHT
T ss_pred             ChhhcCCCCCCEEEEecccccchhHHHHHhhcC---CCEEEEECC--CCccE---------EEEEcCCHHHHHHHHHHHh
Confidence            689999999999999765543    35577888   999999963  55555         69889 9999999998875


Q ss_pred             cccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          113 GQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       113 ~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      ..          +   ..+|||||++ |+|+.+++..+..
T Consensus        67 ~~----------~---~~vlVEefI~-G~E~tv~vl~~~~   92 (203)
T PF07478_consen   67 KY----------D---DDVLVEEFIS-GREFTVGVLGNGE   92 (203)
T ss_dssp             TT----------H---SEEEEEE--S-SEEEEEEEEESSS
T ss_pred             hh----------c---ceEEEEeeec-ccceEEEEEecCC
Confidence            32          1   5899999996 9999999998544

3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=98.84  E-value=1e-07  Score=105.58  Aligned_cols=98  Identities=15%  Similarity=0.155  Sum_probs=78.6

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCC------HH-HHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVAS------VD-EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-   99 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s------~e-ea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-   99 (394)
                      +..+++.+|++|+++|||+|++..++.      .+ +..++.+++|   +|+||||..  +|.++         ||.++ 
T Consensus       565 l~~DK~~~K~~l~~~GIpt~~~~~~~~~~~~~~~~~~~~~~~~~lg---~P~iVKP~~--~GsS~---------Gv~~v~  630 (809)
T PRK14573        565 IAMDKVLTKRFASDVGVPVVPYQPLTLAGWKREPELCLAHIVEAFS---FPMFVKTAH--LGSSI---------GVFEVH  630 (809)
T ss_pred             HHcCHHHHHHHHHHCCCCCCCEEEEechhcccChHHHHHHHHHhcC---CCEEEeeCC--CCCCC---------CEEEEC
Confidence            457899999999999999999988763      22 2345667888   999999964  44444         79999 


Q ss_pred             CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       100 s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +.+|+.+++++.+..          .   ..++|||++..++|+.+++..|..
T Consensus       631 ~~~el~~a~~~a~~~----------~---~~vlVEe~i~~grEi~v~vl~~~~  670 (809)
T PRK14573        631 NVEELRDKISEAFLY----------D---TDVFVEESRLGSREIEVSCLGDGS  670 (809)
T ss_pred             CHHHHHHHHHHHHhc----------C---CcEEEEeccCCCEEEEEEEEeCCC
Confidence            999999999887532          1   469999999878999999998854

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=98.83  E-value=9.3e-08  Score=108.56  Aligned_cols=172  Identities=17%  Similarity=0.235  Sum_probs=112.3

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE  103 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee  103 (394)
                      ++.-+++.+|++++++|||+|++.  .+.+.+|+.++++++|   ||++|||..  ||-|+         |++++ +++|
T Consensus       111 ~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iG---yPvIVKP~~--GGGGr---------G~riV~~~eE  176 (1143)
T TIGR01235       111 DQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIG---YPVIIKASW--GGGGR---------GMRVVRSEAD  176 (1143)
T ss_pred             HHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcC---CCEEEEECC--CCCCC---------ccEEeCCHHH
Confidence            344688999999999999999975  5689999999999998   999999954  44344         68899 9999


Q ss_pred             HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEe
Q 016159          104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP  183 (394)
Q Consensus       104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~  183 (394)
                      +.+++++.......     ..|.  ..++||++++..+|+.+.+..|...  .++.+. .-...   +.+++ .++... 
T Consensus       177 L~~a~~~a~~ea~~-----~fg~--~~vlIEefI~g~reIeVqVlgD~~G--~vv~l~-eRdcs---vqrr~-qk~ie~-  241 (1143)
T TIGR01235       177 VADAFQRAKSEAKA-----AFGN--DEVYVEKLIERPRHIEVQLLGDKHG--NVVHLF-ERDCS---VQRRH-QKVVEV-  241 (1143)
T ss_pred             HHHHHHHHHHHHHH-----hcCC--CcEEEEEcCCCCeEEEEEEEEeCCC--CEEEEE-ecccc---ccccC-ceEEEE-
Confidence            99998876533210     1121  4799999998889999999999753  344332 11122   23333 233222 


Q ss_pred             cCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc--CCcceeeecceee
Q 016159          184 IDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEINPLAE  238 (394)
Q Consensus       184 v~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e--~d~~~lEINPLvv  238 (394)
                       .|...+++.       .|.++++.+|+.+.--          .+++.+  ....++||||...
T Consensus       242 -aPa~~L~~e~r~~I~~~A~kla~aLgy~G~gt----------VEFlvd~dg~~yfIEVNPRiq  294 (1143)
T TIGR01235       242 -APAPYLSREVRDEIAEYAVKLAKAVNYINAGT----------VEFLVDNDGKFYFIEVNPRIQ  294 (1143)
T ss_pred             -eCCCCCCHHHHHHHHHHHHHHHHHcCCcceEE----------EEEEEeCCCcEEEEEeecCCC
Confidence             333234543       3344555666543100          012222  2477999999885

This enzyme plays a role in gluconeogensis but not glycolysis.

>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase

Probab=98.80  E-value=2.7e-07  Score=90.55  Aligned_cols=98  Identities=15%  Similarity=0.221  Sum_probs=75.3

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeC-CHHHHH-----HHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVA-SVDEVK-----KAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-   99 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~-s~eea~-----~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-   99 (394)
                      .+..+++..|++|+++|||+|++.+++ +.++..     .+...++   +|+|+||..  ++.|+         ||.++ 
T Consensus       101 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~---~P~vvKP~~--~~~s~---------Gv~~v~  166 (315)
T TIGR01205       101 ALSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAEPLG---FPVIVKPAR--EGSSV---------GVSKVK  166 (315)
T ss_pred             HHHHCHHHHHHHHHHCCCCCCCEEEEecccccchhhhHHHHHHhcC---CCEEEEeCC--CCCcc---------CEEEEC
Confidence            344689999999999999999999887 544322     3345677   999999964  33344         68888 


Q ss_pred             CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       100 s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      |.+++.++++..+..          +   ..++|||+++ ++|+.+++..+..
T Consensus       167 ~~~el~~~~~~~~~~----------~---~~~lvEe~i~-G~e~~v~vi~~~~  205 (315)
T TIGR01205       167 SEEELQAALDEAFEY----------D---EEVLVEQFIK-GRELEVSILGNEE  205 (315)
T ss_pred             CHHHHHHHHHHHHhc----------C---CcEEEEcCCC-CEEEEEEEECCCC
Confidence            999999988876532          1   3699999998 8999999988543

but a number of antibiotic resistance proteins score above the trusted cutoff of this model.

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.80  E-value=1.6e-07  Score=97.05  Aligned_cols=196  Identities=16%  Similarity=0.257  Sum_probs=134.6

Q ss_pred             CHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159           31 HEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL  107 (394)
Q Consensus        31 ~E~~aK~lL~~~GIpvp~~~~--~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a  107 (394)
                      .+..||.++.+.|+|+.|++.  +.+.+++...|+++|   |||.+|+.  +||-||         |.+++ +++|+.++
T Consensus       115 dK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiG---yPVlIKAs--aGGGGK---------GMRvv~~~~e~~e~  180 (645)
T COG4770         115 DKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIG---YPVLIKAS--AGGGGK---------GMRVVETPEEFAEA  180 (645)
T ss_pred             cHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcC---CcEEEEec--cCCCCC---------ceEeecCHHHHHHH
Confidence            567899999999999988865  678999999999999   99999995  577687         79999 99999988


Q ss_pred             HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCCC
Q 016159          108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF  187 (394)
Q Consensus       108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p~  187 (394)
                      ++.-....     +...|.  ..++||+|+...+.+-+.+.-|...  -++..+ +=.+++   +++| +|+.....+| 
T Consensus       181 l~sarrEA-----~asFGd--drv~iEkyl~~PRHIEiQV~aD~HG--Nvv~Lg-ERdCSl---QRRh-QKVIEEAPaP-  245 (645)
T COG4770         181 LESARREA-----KASFGD--DRVFIEKYLDKPRHIEIQVFADQHG--NVVHLG-ERDCSL---QRRH-QKVIEEAPAP-  245 (645)
T ss_pred             HHHHHHHH-----HhhcCC--ceEehhhhcCCCceEEEEEEecCCC--CEEEee-ccccch---hhhc-chhhhcCCCC-
Confidence            87764332     123453  5899999998889999999999865  466666 555665   6666 6776665555 


Q ss_pred             CCCCHHH-------HHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccC---CcEEEee-----ceee
Q 016159          188 NGITDED-------AAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG---KQLVAAD-----AKLN  252 (394)
Q Consensus       188 ~gl~~~~-------a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~---G~~~alD-----aki~  252 (394)
                       ++++++       |.++++..|+.+.      -+++.|..  .+..+..+|.|-.+.-++   ..++-+|     -|+.
T Consensus       246 -~l~~~~R~amg~aAv~~a~avgY~gA------GTVEFivd--~~~~f~FlEMNTRLQVEHPVTE~iTGiDLVewqiRVA  316 (645)
T COG4770         246 -FLTEETREAMGEAAVAAAKAVGYVGA------GTVEFIVD--ADGNFYFLEMNTRLQVEHPVTELITGIDLVEWQIRVA  316 (645)
T ss_pred             -CCCHHHHHHHHHHHHHHHHhcCCCcC------ceEEEEEc--CCCcEEEEEeecceeccccchhhhhhhHHHHHHHHHh
Confidence             477753       3444555565431      01110000  123477899998776543   1255566     3344


Q ss_pred             cCcchhccchhh
Q 016159          253 FDDNAAFRQKEI  264 (394)
Q Consensus       253 ldd~a~fR~~~~  264 (394)
                      -.+.-.|.|.++
T Consensus       317 ~GekL~~~Q~di  328 (645)
T COG4770         317 SGEKLPFTQDDI  328 (645)
T ss_pred             cCCcCCcccccc
Confidence            444456666665

>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit

Probab=98.78  E-value=1.5e-07  Score=106.91  Aligned_cols=97  Identities=21%  Similarity=0.216  Sum_probs=81.9

Q ss_pred             CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA  108 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~  108 (394)
                      -+.+..+++|+++|||+|++..+++.+|+.++++++|   ||+||||....||  +         ||.++ |++|+.+++
T Consensus       668 ~DK~~f~~lL~~~GIp~P~~~~v~s~ee~~~~~~~ig---yPvIVKP~~~~Gg--~---------gv~iv~~~eeL~~~l  733 (1050)
T TIGR01369       668 EDREKFSELLDELGIPQPKWKTATSVEEAVEFASEIG---YPVLVRPSYVLGG--R---------AMEIVYNEEELRRYL  733 (1050)
T ss_pred             CCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHhcC---CCEEEEECCCCCC--C---------CeEEECCHHHHHHHH
Confidence            4567789999999999999999999999999999998   9999999654343  3         68889 999999999


Q ss_pred             HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                      ++.....        .+   ..++||||++.+.|+.+.+..|.
T Consensus       734 ~~a~~~s--------~~---~~vlVeefI~~G~E~~Vd~l~d~  765 (1050)
T TIGR01369       734 EEAVEVS--------PE---HPVLIDKYLEDAVEVDVDAVSDG  765 (1050)
T ss_pred             HHHHHhC--------CC---CCEEEeecCCCCeEEEEEEEEeC
Confidence            9875432        11   46999999988999999999885

In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.

>PRK12999 pyruvate carboxylase; Reviewed

Probab=98.78  E-value=1.5e-07  Score=107.15  Aligned_cols=173  Identities=20%  Similarity=0.304  Sum_probs=114.1

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE  103 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee  103 (394)
                      ++.-+++.+|+++.++|||+|++.  .+.+.+|+.++++++|   ||+|+||..  |+-|+         ||+++ |++|
T Consensus       115 ~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iG---yPvVVKP~~--GgGGr---------Gv~vV~~~eE  180 (1146)
T PRK12999        115 RLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIG---YPIMLKASA--GGGGR---------GMRIVRSEEE  180 (1146)
T ss_pred             HHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhC---CCEEEEECC--CCCCC---------CeEEeCCHHH
Confidence            344678999999999999998876  4899999999999998   999999964  33344         69999 9999


Q ss_pred             HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEe
Q 016159          104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP  183 (394)
Q Consensus       104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~  183 (394)
                      +.+++++......   .  ..|.  ..++||+|++..+|+.+.+..|...  -++.+. .....+   .+++ .++..  
T Consensus       181 L~~a~~~a~~ea~---~--~fg~--~~vlVEefI~g~~~ieVqvl~D~~G--~vv~l~-erdcsv---qrr~-qk~ie--  244 (1146)
T PRK12999        181 LEEAFERAKREAK---A--AFGN--DEVYLEKYVENPRHIEVQILGDKHG--NVVHLY-ERDCSV---QRRH-QKVVE--  244 (1146)
T ss_pred             HHHHHHHHHHHHH---h--hcCC--CcEEEecCCCCCeEEEEEEEEECCC--CEEEEE-ccccce---eecC-ccEEE--
Confidence            9999887653321   0  0121  4799999998778888999988654  344443 222222   3333 23322  


Q ss_pred             cCCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc--CCcceeeecceeec
Q 016159          184 IDVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEINPLAET  239 (394)
Q Consensus       184 v~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e--~d~~~lEINPLvv~  239 (394)
                      ..|...+++.       .+.++++.+|+.+.--          .+++.+  .+..++||||.+..
T Consensus       245 ~aP~~~L~~~~~~~l~~~A~kl~~algy~G~gt----------VEflvd~dg~~yfIEINpRlqv  299 (1146)
T PRK12999        245 IAPAPGLSEELRERICEAAVKLARAVGYVNAGT----------VEFLVDADGNFYFIEVNPRIQV  299 (1146)
T ss_pred             EcCCCCCCHHHHHHHHHHHHHHHHHcCCCceEE----------EEEEEECCCCEEEEEEECCCCC
Confidence            2443345543       3455566666653100          112222  25789999998753

>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A

Probab=98.76  E-value=9.9e-08  Score=85.45  Aligned_cols=96  Identities=28%  Similarity=0.274  Sum_probs=72.1

Q ss_pred             CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHH
Q 016159           31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAG  109 (394)
Q Consensus        31 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~  109 (394)
                      +++..+++++++|||+|++..+.+.+++.+.+..++   +|+||||....+  |+         ||.+. |++++.++++
T Consensus         4 dK~~~~~~~~~~gv~~P~~~~~~~~~~~~~~~~~~~---~p~vvKp~~g~g--s~---------gv~~~~~~~~l~~~~~   69 (184)
T PF13535_consen    4 DKYRMRELLKKAGVPVPKTRIVDSEEELRAFAEDLG---FPFVVKPVDGSG--SR---------GVFIVHSPEELEAALA   69 (184)
T ss_dssp             CHHHHHHHHHHHTS----EEEECSHHHHHHHHHHSS---SSEEEEESS-ST--TT---------T-EEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcC---CCEEEEcCcccc--CC---------CEEEeCCHHHHHHHHH
Confidence            577889999999999999999999999999999998   999999976443  23         68888 9999999988


Q ss_pred             HHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159          110 KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD  150 (394)
Q Consensus       110 ~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D  150 (394)
                      ++....-         .....++|||+++ +.|+.+-+..+
T Consensus        70 ~~~~~~~---------~~~~~~ivqe~i~-g~e~~~~~~~~  100 (184)
T PF13535_consen   70 EIREDSP---------LGNGPVIVQEYIP-GDEYSVDGVVD  100 (184)
T ss_dssp             HHHHHHS----------HSSSEEEEE----SEEEEEEEEEE
T ss_pred             HHHHhcc---------cCCccEEEEEeee-eeeEEEEEEEE
Confidence            8854420         1125899999999 79999988887

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=98.76  E-value=7.5e-08  Score=109.43  Aligned_cols=95  Identities=14%  Similarity=0.170  Sum_probs=79.3

Q ss_pred             CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA  108 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~  108 (394)
                      -+.+.-+++|.++|||+|++..+++.+|+.++++++|   ||+|+||....|  |+         |+.++ |.+|+++++
T Consensus       669 ~DK~~f~~ll~~~GIp~P~~~~~~s~ee~~~~~~~ig---yPvVVKP~~~~G--g~---------gv~iv~~~eeL~~~l  734 (1068)
T PRK12815        669 EDRDRFYQLLDELGLPHVPGLTATDEEEAFAFAKRIG---YPVLIRPSYVIG--GQ---------GMAVVYDEPALEAYL  734 (1068)
T ss_pred             cCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHhcC---CCEEEEeCCCCC--CC---------CEEEECCHHHHHHHH
Confidence            4667789999999999999999999999999999998   999999965433  33         68899 999999988


Q ss_pred             HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      ++...          ..   ..++||||++ +.|+.+.+..|..
T Consensus       735 ~~~~s----------~~---~~vlIeefI~-G~E~~Vd~i~dg~  764 (1068)
T PRK12815        735 AENAS----------QL---YPILIDQFID-GKEYEVDAISDGE  764 (1068)
T ss_pred             HHhhc----------CC---CCEEEEEeec-CceEEEEEEEcCC
Confidence            87611          11   4799999996 7899999998864

>PRK06395 phosphoribosylamine--glycine ligase; Provisional

Probab=98.76  E-value=1.9e-07  Score=96.42  Aligned_cols=99  Identities=21%  Similarity=0.214  Sum_probs=73.5

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCC-ceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-C----
Q 016159           27 RLNIHEYQGAELMAKYGINVPK-GLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-K----  100 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~-~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s----  100 (394)
                      ++.-+++.+|++|.++|||+|+ +..+.+.+|+..++.+++   +|+||||...+||  |         ||.++ +    
T Consensus       101 ~~e~dK~~~k~~l~~~gIptp~~~~~~~~~~e~~~~~~~~~---~PvVVKP~~~sgg--k---------GV~v~~~~~~~  166 (435)
T PRK06395        101 MIETSKMFMRYLMERHNIPGNINFNACFSEKDAARDYITSM---KDVAVKPIGLTGG--K---------GVKVTGEQLNS  166 (435)
T ss_pred             HHhhCHHHHHHHHHHCCcCCCcccceeCChHHHHHHHHhhC---CCEEEEeCCCCCC--C---------CeEEecCchhh
Confidence            3556788899999999999974 457777888888888887   9999999877764  4         58776 3    


Q ss_pred             HHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          101 KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       101 ~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                      .+++.+++.++...          +   ..++||||+. |.|+.+-+..|...
T Consensus       167 ~~ea~~~~~~~~~~----------~---~~viIEEfl~-G~E~Svd~~~dg~~  205 (435)
T PRK06395        167 VDEAIRYAIEILDR----------D---GVVLIEKKMT-GEEFSLQAFSDGKH  205 (435)
T ss_pred             HHHHHHHHHHHhCC----------C---CcEEEEeecC-CceEEEEEEEcCCe
Confidence            23444444443211          1   4699999998 78999999988654

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=98.75  E-value=8.1e-08  Score=97.34  Aligned_cols=103  Identities=19%  Similarity=0.184  Sum_probs=82.5

Q ss_pred             ccCCCHHHHHHHHH-HcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159           27 RLNIHEYQGAELMA-KYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV  104 (394)
Q Consensus        27 ~m~L~E~~aK~lL~-~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~  104 (394)
                      ++.-+++..|++|. ++|||+|++..+++.+++.++++++|   ||+|+||....  .|+         ||.++ |.+|+
T Consensus       109 ~~~~dK~~~k~~l~~~~gip~p~~~~~~s~~~l~~~~~~~g---~P~VvKP~~g~--~s~---------Gv~~v~~~~el  174 (395)
T PRK09288        109 RLTMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEIG---YPCVVKPVMSS--SGK---------GQSVVRSPEDI  174 (395)
T ss_pred             HHHhCHHHHHHHHHHhCCCCCCCceEECCHHHHHHHHHhcC---CCEEEEeCCCc--CCC---------CeEEECCHHHH
Confidence            34456778889884 79999999999999999999999998   99999997432  244         68899 99999


Q ss_pred             HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      .++++.+.....        + .-..++||||++.+.|+.+.+..|..
T Consensus       175 ~~~~~~~~~~~~--------~-~~~~~lvEefi~~~~E~sv~~~~~~~  213 (395)
T PRK09288        175 EKAWEYAQEGGR--------G-GAGRVIVEEFIDFDYEITLLTVRAVD  213 (395)
T ss_pred             HHHHHHHHhhcc--------c-cCCCEEEEEecCCCEEEEEEEEEcCC
Confidence            999998754321        0 01479999999988999998888765

>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=98.75  E-value=8.4e-08  Score=109.11  Aligned_cols=99  Identities=20%  Similarity=0.231  Sum_probs=81.6

Q ss_pred             CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159           29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL  107 (394)
Q Consensus        29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a  107 (394)
                      .-+.+..+++|+++|||+|++..+.+.+|+.++++++|   ||+||||....|  |+         ||.++ |.+|+.++
T Consensus       667 ~~DK~~~~~~L~~~GIp~P~~~~~~s~ee~~~~~~~ig---yPvvVKP~~~~G--g~---------Gv~iv~~~eeL~~~  732 (1066)
T PRK05294        667 AEDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEIG---YPVLVRPSYVLG--GR---------AMEIVYDEEELERY  732 (1066)
T ss_pred             hCCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhcC---CCeEEEeCCCCC--CC---------cEEEECCHHHHHHH
Confidence            34677789999999999999999999999999999998   999999965433  33         68899 99999999


Q ss_pred             HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +++.....        .+   ..++||||+++..|+.+.+..|..
T Consensus       733 ~~~a~~~s--------~~---~~vlIEefI~G~~E~sV~~v~dg~  766 (1066)
T PRK05294        733 MREAVKVS--------PD---HPVLIDKFLEGAIEVDVDAICDGE  766 (1066)
T ss_pred             HHHHHhhC--------CC---CcEEEEecCCCCEEEEEEEEecCC
Confidence            88875432        11   469999999865699999988754

>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated

Probab=98.75  E-value=4.7e-07  Score=93.45  Aligned_cols=106  Identities=13%  Similarity=0.182  Sum_probs=82.3

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKG--LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE  103 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~--~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee  103 (394)
                      +..-+++..|++|+++|||+|++  ..+.+.+|+.++++++|   ||+||||....|  |+         ||.++ |.+|
T Consensus       111 ~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~---~P~VvKP~~g~g--s~---------Gv~iv~~~~e  176 (450)
T PRK06111        111 AKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIG---YPVMLKASAGGG--GI---------GMQLVETEQE  176 (450)
T ss_pred             HHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhC---CCEEEEeCCCCC--Cc---------eEEEECCHHH
Confidence            45568999999999999999986  55689999999999998   999999975433  44         69999 9999


Q ss_pred             HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                      +.++++.......   .  ..+  -..++|||++++.+|+.+.+..|...
T Consensus       177 l~~a~~~~~~~~~---~--~~~--~~~~lvEe~i~g~~e~~v~v~~~~~g  219 (450)
T PRK06111        177 LTKAFESNKKRAA---N--FFG--NGEMYIEKYIEDPRHIEIQLLADTHG  219 (450)
T ss_pred             HHHHHHHHHHHHH---H--hcC--CCcEEEEcccCCCcEEEEEEEEcCCC
Confidence            9999887643210   0  011  13699999999778888989888653

>PRK14016 cyanophycin synthetase; Provisional

Probab=98.74  E-value=6.2e-08  Score=105.94  Aligned_cols=95  Identities=22%  Similarity=0.301  Sum_probs=79.2

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE-C-CHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI-V-KKEEVE  105 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l-~-s~ee~~  105 (394)
                      ..-++..+|++|+++|||+|++..+.+++++.++++++|   ||+|+||..  |+.|+         ||.+ . |++++.
T Consensus       211 i~~DK~~tk~lL~~~GIPvP~~~~v~s~~~a~~~a~~iG---~PvVVKP~~--G~~G~---------GV~~~v~~~~el~  276 (727)
T PRK14016        211 IACDKELTKRLLAAAGVPVPEGRVVTSAEDAWEAAEEIG---YPVVVKPLD--GNHGR---------GVTVNITTREEIE  276 (727)
T ss_pred             HhCCHHHHHHHHHHCCcCCCCeeEeCCHHHHHHHHHHcC---CCEEEEECC--CCCCC---------ceEEecCCHHHHH
Confidence            346788999999999999999999999999999999998   999999964  44454         7988 6 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD  150 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D  150 (394)
                      ++++.+...          +   ..++||||++ +.|+.+.+..+
T Consensus       277 ~a~~~a~~~----------~---~~viVEe~I~-G~d~Rv~Vvgg  307 (727)
T PRK14016        277 AAYAVASKE----------S---SDVIVERYIP-GKDHRLLVVGG  307 (727)
T ss_pred             HHHHHHHHh----------C---CeEEEEEecC-CceEEEEEECC
Confidence            998876432          1   4799999998 78988876543

>TIGR02068 cya_phycin_syn cyanophycin synthetase

Probab=98.71  E-value=7.8e-08  Score=107.06  Aligned_cols=95  Identities=22%  Similarity=0.324  Sum_probs=79.1

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE-C-CHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI-V-KKEEVE  105 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l-~-s~ee~~  105 (394)
                      ..-+++.+|++|+++|||+|++..+.+++++.++++++|   +|+|+||..  |+.|+         ||.+ . |++++.
T Consensus       210 ia~DK~~tk~lL~~~GIpvP~~~~~~s~~ea~~~~~~ig---~PvVVKP~~--g~~G~---------GV~l~v~s~~el~  275 (864)
T TIGR02068       210 IACDKDLTKEILSDAGVPVPEGTVVQSAEDAWEAAQDLG---YPVVIKPYD--GNHGR---------GVTINILTRDEIE  275 (864)
T ss_pred             HHcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcC---CCEEEEECC--CCCcc---------CEEEEeCCHHHHH
Confidence            346788999999999999999999999999999999998   999999975  33344         6888 5 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD  150 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D  150 (394)
                      ++++.+...          +   ..++||+|++ +.|+.+.+..+
T Consensus       276 ~a~~~a~~~----------~---~~vlVEefI~-G~e~rvlVv~~  306 (864)
T TIGR02068       276 SAYEAAVEE----------S---SGVIVERFIT-GRDHRLLVVGG  306 (864)
T ss_pred             HHHHHHHhh----------C---CcEEEEEecc-CCEEEEEEECC
Confidence            998887432          1   4799999998 79998877543

Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=98.69  E-value=6.3e-07  Score=89.17  Aligned_cols=121  Identities=19%  Similarity=0.176  Sum_probs=88.6

Q ss_pred             CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA  108 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~  108 (394)
                      -+.+.=|++|++.|||||++.++.+.+|+..+++++|   +|.|+|..- .|+.||         |..+. +++++.+.+
T Consensus        98 qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g---~p~VlKtr~-gGYDGk---------GQ~~i~~~~~~~~~~  164 (375)
T COG0026          98 QDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLG---FPAVLKTRR-GGYDGK---------GQWRIRSDADLELRA  164 (375)
T ss_pred             hhHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcC---CceEEEecc-ccccCC---------CeEEeeCcccchhhH
Confidence            3455569999999999999999999999999999998   999999964 377888         45555 777766654


Q ss_pred             HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCCC
Q 016159          109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF  187 (394)
Q Consensus       109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p~  187 (394)
                      ......              ...++|+|++..+|+.+=+.+++.  |-+..+=.     +|.+.+   +-|.+..+.|.
T Consensus       165 ~~~~~~--------------~~~vlE~fV~F~~EiSvi~aR~~~--G~~~~yP~-----~eN~h~---~gIl~~siaPa  219 (375)
T COG0026         165 AGLAEG--------------GVPVLEEFVPFEREISVIVARSND--GEVAFYPV-----AENVHR---NGILRTSIAPA  219 (375)
T ss_pred             hhhhcc--------------CceeEEeecccceEEEEEEEEcCC--CCEEEecc-----cceeee---cCEEEEEEecC
Confidence            443211              122899999999997776666654  35666642     566654   55777777774

>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]

Probab=98.67  E-value=1.1e-07  Score=98.39  Aligned_cols=116  Identities=27%  Similarity=0.289  Sum_probs=95.3

Q ss_pred             hhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159           24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE  102 (394)
Q Consensus        24 ~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e  102 (394)
                      |.-++.-++..+|++|.+||||+.++..++++++|....+..+  ..++|+|++.++.|  |         ||.+. |.+
T Consensus       101 ~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~~--~~~~ViKAdGLAAG--K---------GViv~~~~~  167 (788)
T KOG0237|consen  101 QAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSAT--DKALVIKADGLAAG--K---------GVIVAKSKE  167 (788)
T ss_pred             HHHHhhhhHHHHHHHHHhcCCCcceeeeeCCHHHHHHHHHhCC--CcceEEeecccccC--C---------ceEeeccHH
Confidence            4446778889999999999999999999999999999999874  35799999998864  5         69999 999


Q ss_pred             HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeee
Q 016159          103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG  160 (394)
Q Consensus       103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~  160 (394)
                      |+-+++++|+....       .|..-..|.|||+++ +.|+.+-...|...-.|+...
T Consensus       168 EA~eAv~sIl~~~~-------fg~AG~tvViEE~LE-GeEvS~laftDG~s~~~mp~a  217 (788)
T KOG0237|consen  168 EAFEAVDSILVKKV-------FGSAGKTVVIEELLE-GEEVSFLAFTDGYSVRPLPPA  217 (788)
T ss_pred             HHHHHHHHHHhhhh-------hccccceEehhhhcC-cceEEEEEEecCcccccCCcc
Confidence            99999999987653       343347899999999 889888888886655565543

>PRK14571 D-alanyl-alanine synthetase A; Provisional

Probab=98.66  E-value=7.7e-07  Score=87.17  Aligned_cols=91  Identities=18%  Similarity=0.200  Sum_probs=71.1

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ...+++.+|++|+ .|||+|++..+.+.+    .++.++   +|+|+||..  ++-++         ||.++ |.+++.+
T Consensus        92 i~~DK~~~k~~l~-~~ip~p~~~~~~~~~----~~~~l~---~P~vvKP~~--g~~s~---------Gv~~v~~~~el~~  152 (299)
T PRK14571         92 ICFDKLLTYRFLK-GTVEIPDFVEIKEFM----KTSPLG---YPCVVKPRR--EGSSI---------GVFICESDEEFQH  152 (299)
T ss_pred             HHcCHHHHHHHHh-cCCCCCCEEEEechh----hhhhcC---CCEEEecCC--CCCcC---------CEEEECCHHHHHH
Confidence            4467888999998 589999999886532    235677   999999964  33344         68899 9999998


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                      ++++.+...             ..++||||++ ++|+.+++..+.
T Consensus       153 ~~~~~~~~~-------------~~vlVEeyI~-G~E~sv~vl~~~  183 (299)
T PRK14571        153 ALKEDLPRY-------------GSVIVQEYIP-GREMTVSILETE  183 (299)
T ss_pred             HHHHHHhhC-------------CcEEEEcccc-ceEEEEEEEcCC
Confidence            887765321             3699999998 899999999874

>PRK05784 phosphoribosylamine--glycine ligase; Provisional

Probab=98.65  E-value=2.2e-07  Score=97.20  Aligned_cols=104  Identities=21%  Similarity=0.246  Sum_probs=77.9

Q ss_pred             ccCCCHHHHHHHHHHcCCCCC-CceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH-
Q 016159           27 RLNIHEYQGAELMAKYGINVP-KGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE-  103 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp-~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee-  103 (394)
                      +..-++..+|++|+++|||+| ++..+++.+|+.++++.+    +|+||||...+++  |         ||.++ |+++ 
T Consensus       105 ~le~dK~~~K~~l~~~gIpt~~~~~~~~~~~ea~~~~~~~----~PvVVKP~~~agg--k---------GV~iv~~~~e~  169 (486)
T PRK05784        105 RIEKSKVWARELMWKYSIPGRLRYKVFYDVEEAAKFIEYG----GSVAIKPARQAGG--K---------GVKVIADLQAY  169 (486)
T ss_pred             HHhcCHHHHHHHHHHcCcCCCccceEeCCHHHHHHHHhhc----CCEEEeeCCCCCC--C---------CEEEECChhHh
Confidence            455788899999999999997 788889999999888665    6999999876653  4         69999 8762 


Q ss_pred             ----HH----HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          104 ----VE----DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       104 ----~~----~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                          +.    +++++++....      ..|..-..|+||||+. |.|+.+.+..|..
T Consensus       170 ~~~~~~ea~~~a~~~~~~~~~------~~g~~~~~VlIEEfL~-G~E~SV~al~dG~  219 (486)
T PRK05784        170 LSQEKREALTKSVNDIKEGSA------YYKDVEPKILVEEKVD-GVEYTLQVLTDGE  219 (486)
T ss_pred             cchhHHHHHHHHHHHHHHhHh------hccCCCCeEEEEEccC-CeEEEEEEEECCC
Confidence                22    44455543210      1232235899999999 7899999998754

>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type

Probab=98.65  E-value=1.8e-07  Score=101.49  Aligned_cols=95  Identities=24%  Similarity=0.292  Sum_probs=75.7

Q ss_pred             CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC----CHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV----KKEEVE  105 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~----s~ee~~  105 (394)
                      -++..+|++|+++|||||++.++++.+++.++...++  .+|+||||..  ++.|+         ||.+.    +.+++.
T Consensus       474 ~DK~~TK~iL~~aGIPVP~g~~~~~~~~a~~~~~~~~--g~PVVVKP~~--g~~G~---------GVsi~~~~~~~eel~  540 (737)
T TIGR01435       474 ENKVVTKKVLAEAGFRVPFGDEFSSQALALEAFSLFE--NKAIVVKPKS--TNYGL---------GITIFKNGFTLEDFQ  540 (737)
T ss_pred             cCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHhc--CCCEEEeeCC--CCCcC---------CeEEecCcCCHHHHH
Confidence            4788999999999999999999999988888877772  2899999965  44555         67775    478888


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                      ++++..+..          +   +.|+|||+++ |.|+.+.|..+.
T Consensus       541 ~Al~~A~~~----------~---~~VLVEefI~-G~EyRv~VIg~k  572 (737)
T TIGR01435       541 EALNIAFSE----------D---SSVIIEEFLP-GTEYRFFVLNDK  572 (737)
T ss_pred             HHHHHHHhc----------C---CeEEEEeccc-CCEEEEEEECCe
Confidence            887765421          1   4799999998 899999888653

gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=98.64  E-value=8.6e-07  Score=92.88  Aligned_cols=276  Identities=19%  Similarity=0.306  Sum_probs=171.0

Q ss_pred             CHHHHHHHHHHcCCCCCCcee--eCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159           31 HEYQGAELMAKYGINVPKGLA--VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL  107 (394)
Q Consensus        31 ~E~~aK~lL~~~GIpvp~~~~--~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a  107 (394)
                      .+-.|+.+--++|+|+.++.-  +++.+||.+.+++.|   +|+++|+..  ||-|.         |.+++ +.|+++++
T Consensus       147 DKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG---~PvI~KAAy--GGGGR---------GmRvVr~~e~vee~  212 (1176)
T KOG0369|consen  147 DKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYG---LPVIIKAAY--GGGGR---------GMRVVRSGEDVEEA  212 (1176)
T ss_pred             hHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcC---CcEEEeecc--cCCCc---------ceEEeechhhHHHH
Confidence            455788888999999987754  689999999999999   999999975  44343         68889 99999999


Q ss_pred             HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCCC
Q 016159          108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF  187 (394)
Q Consensus       108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p~  187 (394)
                      +++.....+.     ..|.  -.++||+|++..+.+.+.+.-|.... .+.++  +-.+.|   +++| +++..  +.|.
T Consensus       213 f~Ra~SEA~a-----aFGn--G~~FvEkF~ekPrHIEvQllgD~~GN-vvHLy--ERDCSv---QRRH-QKVVE--iAPA  276 (1176)
T KOG0369|consen  213 FQRAYSEALA-----AFGN--GTLFVEKFLEKPRHIEVQLLGDKHGN-VVHLY--ERDCSV---QRRH-QKVVE--IAPA  276 (1176)
T ss_pred             HHHHHHHHHH-----hcCC--ceeeHHhhhcCcceeEEEEecccCCC-EEEEe--ecccch---hhhh-cceeE--eccc
Confidence            8887544431     2342  36889999988888889999997654 55565  445665   5555 55544  4555


Q ss_pred             CCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccC---CcEEEee---ceeecC
Q 016159          188 NGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG---KQLVAAD---AKLNFD  254 (394)
Q Consensus       188 ~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~---G~~~alD---aki~ld  254 (394)
                      ..++++       +|.++++..|+..+-      +.+.|.+  ....-..+||||.+..++   ..+.-+|   |-+.+.
T Consensus       277 ~~Lp~~vR~~~~~davklAk~vgY~NAG------TvEFLvD--~~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~vA  348 (1176)
T KOG0369|consen  277 KTLPPEVRDAILTDAVKLAKHVGYENAG------TVEFLVD--QKGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHVA  348 (1176)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHhCcccCC------ceEEEEc--cCCCEEEEEecCceeeeeeeeeeeccchhhhhhhhhh
Confidence            556653       455666777765420      1111000  122456899999987543   2355555   334443


Q ss_pred             cch-----hccchhhhc------cCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceee
Q 016159          255 DNA-----AFRQKEIFA------LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLD  323 (394)
Q Consensus       255 d~a-----~fR~~~~~~------~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD  323 (394)
                      ..+     .++|..+..      .| .+.+||..        .+.+-.|+|-+.-.|.|.++           ++    |
T Consensus       349 eG~tLp~lgl~QdkI~trG~aIQCR-vTTEDPa~--------~FqPdtGriEVfRSgeGmGi-----------RL----D  404 (1176)
T KOG0369|consen  349 EGASLPDLGLTQDKITTRGFAIQCR-VTTEDPAK--------GFQPDTGRIEVFRSGEGMGI-----------RL----D  404 (1176)
T ss_pred             cCCCcccccccccceeecceEEEEE-EeccCccc--------cCCCCCceEEEEEeCCCceE-----------ee----c
Confidence            221     234433310      01 11122211        24555688988888888543           11    1


Q ss_pred             cCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc
Q 016159          324 VGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL  377 (394)
Q Consensus       324 ~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~  377 (394)
                       |++|.        .--.=.|.-+.++|-....-.+-...|+.|++|+.|..+.
T Consensus       405 -~asaf--------aGavIsPhYDSllVK~i~h~~~~~~~a~KMiRaL~eFRiR  449 (1176)
T KOG0369|consen  405 -GASAF--------AGAVISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRIR  449 (1176)
T ss_pred             -Ccccc--------ccccccccccceEEEEEecCCccHHHHHHHHHHHHHHhhc
Confidence             11111        1011248888888844444455677889999999996544

>PRK07206 hypothetical protein; Provisional

Probab=98.62  E-value=3.5e-07  Score=93.44  Aligned_cols=99  Identities=19%  Similarity=0.213  Sum_probs=80.1

Q ss_pred             CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCC---cEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK---ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~---PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      -+++..+++|.++|||+|++..+.+.+|+.++++++|   +   |+||||....|  ++         ||.++ |.+|++
T Consensus       107 ~dK~~~r~~l~~~gi~~p~~~~~~~~~e~~~~~~~~g---~~~~P~VvKP~~g~g--s~---------gv~~v~~~~el~  172 (416)
T PRK07206        107 RNKAEMINALAEAGLPAARQINTADWEEAEAWLRENG---LIDRPVVIKPLESAG--SD---------GVFICPAKGDWK  172 (416)
T ss_pred             hCHHHHHHHHHHcCCCcccEEecCCHHHHHHHHHhcC---CCCCCEEEeCCCCCC--CC---------CEEEeCCHHHHH
Confidence            5788899999999999999999999999999999987   6   99999965333  23         69999 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEE
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIML  149 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~  149 (394)
                      ++++++++..-   +   .+.....++||||++ |.|+.+.+..
T Consensus       173 ~~~~~~~~~~~---~---~~~~~~~~lvEe~i~-G~E~sv~~~~  209 (416)
T PRK07206        173 HAFNAILGKAN---K---LGLVNETVLVQEYLI-GTEYVVNFVS  209 (416)
T ss_pred             HHHHHHHhccc---c---CCCCCCeEEEEEccc-cEEEEEEEEE
Confidence            99999865321   1   122225899999998 7899888775

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=98.60  E-value=3e-07  Score=97.94  Aligned_cols=281  Identities=16%  Similarity=0.222  Sum_probs=170.5

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE  103 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee  103 (394)
                      +|.=++-.|+.+-.+.|+||-++.  .+.+.||+.+.+++.|   ||+.+|+..  ||-|+         |.+++ ++++
T Consensus       117 d~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~g---yPvmiKA~~--GGGGR---------GMR~vr~~~~  182 (1149)
T COG1038         117 DMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYG---YPVMIKAAA--GGGGR---------GMRVVRSEAD  182 (1149)
T ss_pred             HHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcC---CcEEEEEcc--CCCcc---------ceeeecCHHH
Confidence            343467789999999999986654  4678999999999999   999999964  44454         69999 9999


Q ss_pred             HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEe
Q 016159          104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVP  183 (394)
Q Consensus       104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~  183 (394)
                      +.+++++.-....     ...|.  ..|+||+++...+.+.+.+.-|.... -|.+|-  =.++|   +++| +++..  
T Consensus       183 l~~~~~~AksEAk-----aAFG~--~eVyvEk~ve~pkHIEVQiLgD~~Gn-vvHLfE--RDCSv---QRRh-QKVVE--  246 (1149)
T COG1038         183 LAEAFERAKSEAK-----AAFGN--DEVYVEKLVENPKHIEVQILGDTHGN-VVHLFE--RDCSV---QRRH-QKVVE--  246 (1149)
T ss_pred             HHHHHHHHHHHHH-----HhcCC--CcEEhhhhhcCcceeEEEEeecCCCC-EEEEee--cccch---hhcc-ceeEE--
Confidence            9998888643321     12453  58999999988889999999998764 777774  45665   5666 56644  


Q ss_pred             cCCCCCCCHHHH-------HHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccC---CcEEEee---ce
Q 016159          184 IDVFNGITDEDA-------AKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG---KQLVAAD---AK  250 (394)
Q Consensus       184 v~p~~gl~~~~a-------~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~---G~~~alD---ak  250 (394)
                      +.|...+++++-       .+++++.++.++      -+++.|-.  .+.....+|+||.+.-++   ..++-+|   +-
T Consensus       247 ~APa~~L~~~~R~~ic~~Avkla~~~~Y~~A------GTvEFLvd--~~~~fyFIEvNPRiQVEHTiTE~vTgiDIV~aQ  318 (1149)
T COG1038         247 VAPAPYLSPELRDEICDDAVKLARNIGYINA------GTVEFLVD--EDGKFYFIEVNPRIQVEHTITEEITGIDIVKAQ  318 (1149)
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHHHHcCCccc------ceEEEEEc--CCCcEEEEEecCceeeEEeeeeeeechhHHHHH
Confidence            466666887543       344555565431      11111100  122567899999988554   2355556   33


Q ss_pred             eecCcc--------hhccchhhhccC-----CCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCC
Q 016159          251 LNFDDN--------AAFRQKEIFALR-----DPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGT  317 (394)
Q Consensus       251 i~ldd~--------a~fR~~~~~~~~-----~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~  317 (394)
                      +.+-+-        ...+|+++.-..     ..+-+||..        ++.+--|+|-..=.++|.++            
T Consensus       319 i~ia~G~~l~~~e~glp~q~dI~~~G~AiQcRITTEDP~n--------~F~PDtGrI~aYRs~gGfGV------------  378 (1149)
T COG1038         319 IHIAAGATLHTPELGLPQQKDIRTHGYAIQCRITTEDPEN--------GFIPDTGRITAYRSAGGFGV------------  378 (1149)
T ss_pred             HHHhccCccCCcccCCCccccccccceEEEEEeeccCccc--------CCCCCCceEEEEecCCCceE------------
Confidence            333332        233344331100     011122222        25566688877767776543            


Q ss_pred             ccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCc
Q 016159          318 PANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSAL  377 (394)
Q Consensus       318 ~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~  377 (394)
                         =||.|-+-....+         .|--+.+||-...--..+.+..+-++++++|..+.
T Consensus       379 ---RLD~Gn~~~GavI---------tpyyDslLVK~t~~~~t~e~a~~km~RaL~EfrIr  426 (1149)
T COG1038         379 ---RLDGGNAYAGAVI---------TPYYDSLLVKVTCWGSTFEEAIRKMIRALREFRIR  426 (1149)
T ss_pred             ---EecCCccccccee---------ccccccceeeEeecCCCHHHHHHHHHHHHHHheec
Confidence               1332222111111         24556666633332244556666778888885443

>PRK14570 D-alanyl-alanine synthetase A; Provisional

Probab=98.59  E-value=2.8e-07  Score=93.06  Aligned_cols=96  Identities=14%  Similarity=0.249  Sum_probs=75.4

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeC------CHHHHHHH-HHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVA------SVDEVKKA-IQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-   99 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~------s~eea~~~-a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-   99 (394)
                      ...+++.+|++|+++|||||++..++      +.+++.+. .+.+|   +|++|||..  +|.+.         ||.++ 
T Consensus       126 l~~DK~~tK~~l~~~GIpt~p~~~~~~~~~~~~~~~~~~~~~~~lg---~PviVKP~~--~GsS~---------Gv~~v~  191 (364)
T PRK14570        126 ISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKEVLG---YPVIVKPAV--LGSSI---------GINVAY  191 (364)
T ss_pred             HHHCHHHHHHHHHHcCCCCCCEEEEeccccccchHHHHHHHHHhcC---CCEEEEeCC--CCCCC---------cEEEeC
Confidence            45679999999999999999987664      34555443 45687   999999954  44344         68899 


Q ss_pred             CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       100 s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                      |.+|+.+++++.+..          +   ..++|||+++ ++|+.+++..|.
T Consensus       192 ~~~el~~al~~a~~~----------~---~~vlVEefI~-GrEi~v~Vlg~~  229 (364)
T PRK14570        192 NENQIEKCIEEAFKY----------D---LTVVIEKFIE-AREIECSVIGNE  229 (364)
T ss_pred             CHHHHHHHHHHHHhC----------C---CCEEEECCcC-CEEEEEEEECCC
Confidence            999999999887632          1   4699999998 899999998664

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=98.58  E-value=9e-07  Score=90.40  Aligned_cols=196  Identities=16%  Similarity=0.228  Sum_probs=128.4

Q ss_pred             CHHHHHHHHHHcCCCCCCc--eeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159           31 HEYQGAELMAKYGINVPKG--LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL  107 (394)
Q Consensus        31 ~E~~aK~lL~~~GIpvp~~--~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a  107 (394)
                      .+..+|+++++.|+|+-++  -...|.|++.+.|+++|   |||.+|+.  +||-||         |.+++ +++|.++.
T Consensus       111 ~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIg---yPvMiKa~--~GGGGk---------GMria~~~~ef~~~  176 (670)
T KOG0238|consen  111 DKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIG---YPVMIKAT--AGGGGK---------GMRIAWSEEEFEEG  176 (670)
T ss_pred             chHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcC---CcEEEEec--cCCCCc---------ceEeecChHHHHHH
Confidence            4678999999999998777  45688999999999999   99999995  466677         79999 99998887


Q ss_pred             HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCCC
Q 016159          108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVF  187 (394)
Q Consensus       108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p~  187 (394)
                      ++......-     ...|.  +++|+|+|++..+.+.+.+.-|...  -.+-++ +=.+.|   ++++ +++.....+| 
T Consensus       177 ~~~ak~Ea~-----~sFGd--d~~llEkfi~npRHiEvQv~gD~hG--nav~l~-ERdCSv---QRRn-QKiiEEaPap-  241 (670)
T KOG0238|consen  177 LESAKQEAA-----KSFGD--DGMLLEKFIDNPRHIEVQVFGDKHG--NAVHLG-ERDCSV---QRRN-QKIIEEAPAP-  241 (670)
T ss_pred             HHHHHHHHH-----hhcCc--chhhHHHhccCCceEEEEEEecCCC--cEEEec-ccccch---hhhh-hhhhhcCCCC-
Confidence            766532211     12342  6899999999889999999999753  567666 666765   5565 6666664444 


Q ss_pred             CCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccC---CcEEEee-----ceee
Q 016159          188 NGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG---KQLVAAD-----AKLN  252 (394)
Q Consensus       188 ~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~---G~~~alD-----aki~  252 (394)
                       .++.+       .|.++++.+|+.++      -+++.+.+  ....+..+|.|-.+.-++   ..++.+|     -|+.
T Consensus       242 -~l~~e~R~~lgeaAv~aa~avgY~~a------GTVEFi~D--~~~~FyFmEmNTRLQVEHPvTEmItg~DLVewqiRvA  312 (670)
T KOG0238|consen  242 -NLPEETRRALGEAAVRAAKAVGYVGA------GTVEFIVD--SKDNFYFMEMNTRLQVEHPVTEMITGTDLVEWQIRVA  312 (670)
T ss_pred             -CCCHHHHHHHHHHHHHHHHhhCCccc------ceEEEEEc--CCCcEEEEEeeceeeecccchhhccchHHHHHHHHHh
Confidence             35543       22333344443221      01111111  122567889998776543   1255566     3344


Q ss_pred             cCcchhccchhh
Q 016159          253 FDDNAAFRQKEI  264 (394)
Q Consensus       253 ldd~a~fR~~~~  264 (394)
                      -.+.-.+.|.++
T Consensus       313 ~ge~lp~~q~ei  324 (670)
T KOG0238|consen  313 AGEPLPLKQEEI  324 (670)
T ss_pred             cCCCCCCCccee
Confidence            444445566554

>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional

Probab=98.58  E-value=3.2e-07  Score=100.45  Aligned_cols=92  Identities=24%  Similarity=0.267  Sum_probs=74.6

Q ss_pred             CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh-CCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC----CHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV----KKEEV  104 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~l-g~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~----s~ee~  104 (394)
                      -+++.+|++|+++|||||++.++.+.+++.++++++ |   +|+||||..  |+.|+         ||.+.    +.+++
T Consensus       487 ~DK~~tk~lL~~~GIpvP~~~~~~~~e~a~~~~~~~~g---~PvVVKP~~--g~~G~---------GV~~~~~~~~~eel  552 (752)
T PRK02471        487 ENKVVTKKILAEAGFPVPAGDEFTSLEEALADYSLFAD---KAIVVKPKS--TNFGL---------GISIFKEPASLEDY  552 (752)
T ss_pred             hCHHHHHHHHHHCCcCCCCEEEEcCHHHHHHHHHHhcC---CCEEEEECC--CCCcC---------CeEEecCcCCHHHH
Confidence            488999999999999999999999999998888775 5   899999975  44455         57653    78888


Q ss_pred             HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEE
Q 016159          105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIML  149 (394)
Q Consensus       105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~  149 (394)
                      .++++..+..          +   ..++||||++ |+|+.+.+..
T Consensus       553 ~~A~~~a~~~----------~---~~vlVEEfI~-G~E~Rv~Vig  583 (752)
T PRK02471        553 EKALEIAFRE----------D---SSVLVEEFIV-GTEYRFFVLD  583 (752)
T ss_pred             HHHHHHHHhc----------C---CcEEEEeccc-CCEEEEEEEC
Confidence            8888776422          1   4799999997 8999988763

>PRK14568 vanB D-alanine--D-lactate ligase; Provisional

Probab=98.58  E-value=2.5e-07  Score=92.62  Aligned_cols=95  Identities=19%  Similarity=0.171  Sum_probs=75.1

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ...++..+|++|+++|||+|++..+++.++..  .+.++   +|+||||..  +|.++         ||.++ |.+|+.+
T Consensus       129 i~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~--~~~l~---~P~iVKP~~--~gsS~---------Gv~~v~~~~eL~~  192 (343)
T PRK14568        129 LCMDKSLAYIVAKNAGIATPAFWTVTADERPD--AATLT---YPVFVKPAR--SGSSF---------GVSKVNSADELDY  192 (343)
T ss_pred             HHhCHHHHHHHHHHcCcCcCCEEEEECCchhh--hhhcC---CCEEEEeCC--CCCCC---------CEEEeCCHHHHHH
Confidence            44678899999999999999999988765432  34677   999999964  34344         79999 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      ++++....          +   ..++|||+++ ++|+.+++..|+.
T Consensus       193 a~~~a~~~----------~---~~vlVEe~I~-G~E~sv~vl~~~~  224 (343)
T PRK14568        193 AIESARQY----------D---SKVLIEEAVV-GSEVGCAVLGNGA  224 (343)
T ss_pred             HHHHHHhc----------C---CcEEEECCcC-CEEEEEEEEcCCC
Confidence            98876422          1   4799999998 7999999987643

>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional

Probab=98.47  E-value=4.4e-06  Score=84.15  Aligned_cols=101  Identities=18%  Similarity=0.229  Sum_probs=74.1

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ..-+...-|++|+++|||+|+.  +.++++       ++   +|+||||....  .||         ||.++ |.+|+.+
T Consensus       120 ~e~dK~~~k~~L~~aGIp~p~~--~~~~~~-------i~---~PvIVKp~~g~--ggk---------Gv~i~~s~~El~~  176 (358)
T PRK13278        120 WEADRDKERKLLEEAGIRIPRK--YESPED-------ID---RPVIVKLPGAK--GGR---------GYFIAKSPEEFKE  176 (358)
T ss_pred             HhcCHHHHHHHHHHcCCCCCCE--eCCHHH-------cC---CCEEEEeCCCC--CCC---------CeEEeCCHHHHHH
Confidence            4455777899999999999985  566654       45   89999995433  344         69999 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC  161 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s  161 (394)
                      ++++++++..       .+. .+.++||||+. |.|+++-+...+-.+ -+-++|
T Consensus       177 ~~~~l~~~~~-------~~~-~~~~iIEEfI~-G~e~sv~~f~s~~~~-~~e~l~  221 (358)
T PRK13278        177 KIDKLIERGL-------ITE-VEEAIIQEYVV-GVPYYFHYFYSPIKN-RLELLG  221 (358)
T ss_pred             HHHHHHhccc-------cCC-CCeEEEEecCC-CcEEEEEEEEeccCC-eEEEEe
Confidence            9999875432       122 36899999998 889999988764322 344444

>PRK12767 carbamoyl phosphate synthase-like protein; Provisional

Probab=98.45  E-value=1.4e-06  Score=85.94  Aligned_cols=101  Identities=25%  Similarity=0.275  Sum_probs=78.5

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHH--HHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKK--AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV  104 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~--~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~  104 (394)
                      ..-+++..+++|.++|||+|++..+++.+++.+  ..++++   +|+|+||..  |..|+         ||.++ |.+++
T Consensus       108 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~---~P~viKP~~--g~~s~---------gv~~v~~~~el  173 (326)
T PRK12767        108 ICNDKWLTYEFLKENGIPTPKSYLPESLEDFKAALAKGELQ---FPLFVKPRD--GSASI---------GVFKVNDKEEL  173 (326)
T ss_pred             HHhcHHHHHHHHHHcCCCCCCEEcccCHHHHHhhhhcccCC---CCEEEEeCC--CCCcc---------CeEEeCCHHHH
Confidence            335778899999999999999999999999887  456677   999999954  32233         68888 99998


Q ss_pred             HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159          105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC  161 (394)
Q Consensus       105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s  161 (394)
                      .+++++.                 ..++|||+++ +.|+.+.+..|... .++..+.
T Consensus       174 ~~~~~~~-----------------~~~lvqeyi~-G~e~~v~~~~~~~G-~~~~~~~  211 (326)
T PRK12767        174 EFLLEYV-----------------PNLIIQEFIE-GQEYTVDVLCDLNG-EVISIVP  211 (326)
T ss_pred             HHHHHhC-----------------CCeEEEeccC-CceEEEEEEEcCCC-CEEEEEE
Confidence            8776542                 2789999996 89999999988543 3554443

>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []

Probab=98.45  E-value=5.8e-07  Score=82.49  Aligned_cols=94  Identities=22%  Similarity=0.304  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh-CCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHH
Q 016159           32 EYQGAELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAG  109 (394)
Q Consensus        32 E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~l-g~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~  109 (394)
                      +.-...+|+++|||+|++.++.+++++.++.+++ +   +|+|+||..  |++|+         ||.+. +++++.+..+
T Consensus         4 K~~~~~~l~~~gipvP~t~~~~~~~~~~~~~~~~~~---~p~ViKp~~--g~~G~---------gV~~i~~~~~~~~~l~   69 (190)
T PF08443_consen    4 KLLTLQLLAKAGIPVPETRVTNSPEEAKEFIEELGG---FPVVIKPLR--GSSGR---------GVFLINSPDELESLLD   69 (190)
T ss_dssp             HHHHHHHHHHTT-----EEEESSHHHHHHHHHHH-----SSEEEE-SB------------------EEEESHCHHHHHHH
T ss_pred             HHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcC---CCEEEeeCC--CCCCC---------EEEEecCHHHHHHHHH
Confidence            4567889999999999999999999999999999 6   899999954  55565         68888 9999887765


Q ss_pred             HHhcccccccccCCCCcccceEEEEeeeCCC--eeEEEEEEEecc
Q 016159          110 KMLGQILVTKQTGPQGKIVSKVYLCEKLSLV--NEMYFAIMLDRK  152 (394)
Q Consensus       110 ~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~--~E~ylgi~~Dr~  152 (394)
                      .....          .   ..+++|||++..  +++.+-+.-+.-
T Consensus        70 ~~~~~----------~---~~~~~Q~fI~~~~g~d~Rv~Vig~~v  101 (190)
T PF08443_consen   70 AFKRL----------E---NPILVQEFIPKDGGRDLRVYVIGGKV  101 (190)
T ss_dssp             ---------------T---TT-EEEE----SS---EEEEEETTEE
T ss_pred             HHHhc----------c---CcceEeccccCCCCcEEEEEEECCEE
Confidence            53211          1   367999999754  477776655443

It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.

>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103

Probab=98.44  E-value=1.4e-06  Score=92.47  Aligned_cols=93  Identities=17%  Similarity=0.237  Sum_probs=76.3

Q ss_pred             CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE-C-CHHHHHH
Q 016159           29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI-V-KKEEVED  106 (394)
Q Consensus        29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l-~-s~ee~~~  106 (394)
                      .-++..+|++|++.|||||++..+.+++++.++++++|    |+||||..  |+.|+         ||.+ . |++++.+
T Consensus       295 ~~DK~~tk~lL~~aGIpVP~~~~~~~~~~~~~~~~~~G----~vVVKP~~--G~~G~---------Gv~v~v~~~~eL~~  359 (547)
T TIGR03103       295 CDDKRLTRRLVSEAGLQVPEQQLAGNGEAVEAFLAEHG----AVVVKPVR--GEQGK---------GISVDVRTPDDLEA  359 (547)
T ss_pred             hcCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHhC----CEEEEECC--CCCCc---------CeEEecCCHHHHHH
Confidence            35789999999999999999999999999999999995    69999954  55555         6887 5 9999998


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD  150 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D  150 (394)
                      +++.....          +   ..++||++++ +.|+.+.|..+
T Consensus       360 a~~~a~~~----------~---~~vlvEe~i~-G~d~Rv~Vigg  389 (547)
T TIGR03103       360 AIAKARQF----------C---DRVLLERYVP-GEDLRLVVIDF  389 (547)
T ss_pred             HHHHHHhc----------C---CcEEEEEecc-CCeEEEEEECC
Confidence            88876422          1   4799999997 78888876544

Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.

>PRK02186 argininosuccinate lyase; Provisional

Probab=98.43  E-value=1.8e-06  Score=96.66  Aligned_cols=98  Identities=16%  Similarity=0.157  Sum_probs=81.0

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ..-+++..|++|+++|||+|++..+++.+|+.+++++++   ||+||||....|  |+         ||.++ |.+|+.+
T Consensus       104 ~~~dK~~~r~~L~~~GIp~P~~~~v~~~~e~~~~~~~~~---~PvVVKP~~g~g--S~---------GV~~v~~~~el~~  169 (887)
T PRK02186        104 TCRDKKRLARTLRDHGIDVPRTHALALRAVALDALDGLT---YPVVVKPRMGSG--SV---------GVRLCASVAEAAA  169 (887)
T ss_pred             HhcCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHhCC---CCEEEEeCCCCC--CC---------CeEEECCHHHHHH
Confidence            346788899999999999999999999999999998998   999999965333  33         69999 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +++++....            -..++||||++ |.|+.+.+..+..
T Consensus       170 a~~~~~~~~------------~~~~lvEEfI~-G~E~sVe~i~~~g  202 (887)
T PRK02186        170 HCAALRRAG------------TRAALVQAYVE-GDEYSVETLTVAR  202 (887)
T ss_pred             HHHHHHhcC------------CCcEEEeeccc-CCcEEEEEEEECC
Confidence            988875321            14799999998 6899998887753

>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX

Probab=98.37  E-value=2.7e-06  Score=82.04  Aligned_cols=101  Identities=17%  Similarity=0.085  Sum_probs=74.5

Q ss_pred             hccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159           26 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV  104 (394)
Q Consensus        26 ~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~  104 (394)
                      -+...++...+++|+++|||+|++..+.+++++.++...++   +|+|+||..-.+  |+         ||.+. +.+++
T Consensus        82 ~~~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~---~P~vvKP~~g~~--g~---------gv~~v~~~~~l  147 (280)
T TIGR02144        82 IEACGDKIFTYLKLAKAGVPTPRTYLAFDREAALKLAEALG---YPVVLKPVIGSW--GR---------LVALIRDKDEL  147 (280)
T ss_pred             HHHHhhHHHHHHHHHHCCcCCCCeEeeCCHHHHHHHHHHcC---CCEEEEECcCCC--cC---------CEEEECCHHHH
Confidence            34557788899999999999999999999999998888888   999999965322  33         58888 98888


Q ss_pred             HHHHHHHhcccccccccCCCCcccceEEEEeeeCC-CeeEEEEEEE
Q 016159          105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIML  149 (394)
Q Consensus       105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~-~~E~ylgi~~  149 (394)
                      .++.+......         +..-..+++|||++. +.|+.+.+..
T Consensus       148 ~~~~~~~~~~~---------~~~~~~~ivQefI~~~~~d~~v~vig  184 (280)
T TIGR02144       148 ESLLEHKEVLG---------GSQHKLFYIQEYINKPGRDIRVFVIG  184 (280)
T ss_pred             HHHHHHHHhhc---------CCcCCeEEEEcccCCCCCceEEEEEC
Confidence            87654321100         001146899999974 6787776653

The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.

>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family

Probab=98.31  E-value=5.1e-06  Score=79.54  Aligned_cols=97  Identities=19%  Similarity=0.160  Sum_probs=72.6

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      +...+++..+++|+++|||+|++..+.+++++.+..++++   +|+|+||..-.  .|+         ||.+. +.+++.
T Consensus        84 ~~~~dK~~~~~~l~~~gi~~P~t~~~~~~~~~~~~~~~~~---~p~vvKP~~g~--~g~---------gv~~i~~~~~l~  149 (277)
T TIGR00768        84 LNAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEIG---FPVVLKPVFGS--WGR---------LVSLARDKQAAE  149 (277)
T ss_pred             HHHhhHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHhcC---CCEEEEECcCC--CCC---------ceEEEcCHHHHH
Confidence            3457788889999999999999999999999999999997   89999997533  243         68888 999888


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCC--eeEEEEE
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLV--NEMYFAI  147 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~--~E~ylgi  147 (394)
                      +.++.+....          ..-..++|||+++..  .|+.+-+
T Consensus       150 ~~~~~~~~~~----------~~~~~~lvQe~I~~~~~~~~rv~v  183 (277)
T TIGR00768       150 TLLEHFEQLN----------GPQNLFYVQEYIKKPGGRDIRVFV  183 (277)
T ss_pred             HHHHHHHHhc----------ccCCcEEEEeeecCCCCceEEEEE
Confidence            7766542111          011479999999853  3544443

This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).

>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon

Probab=98.27  E-value=3.2e-06  Score=84.08  Aligned_cols=163  Identities=23%  Similarity=0.211  Sum_probs=102.1

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC--CHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KKEEVE  105 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~--s~ee~~  105 (394)
                      +.-+++...+.+++.|||+|++..++|.+|.+++.++++....|+.|||..-.||+|           +++.  +.+++.
T Consensus       104 ~~~dK~~~y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~G-----------Fr~l~~~~~~l~  172 (329)
T PF15632_consen  104 LADDKAAFYEFMEANGIPVPPYWRVRTADELKAAYEELRFPGQPLCVKPAVGIGGRG-----------FRVLDESRDELD  172 (329)
T ss_pred             HHhhHHHHHHHHHhCCCCCCCEEEeCCHHHHHHHHHhcCCCCceEEEecccCCCcce-----------EEEEccCcchHH
Confidence            335677888899999999999999999999999999987233569999987666543           4444  444433


Q ss_pred             HHHH------------HHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceee-eecc-CCCcceeec
Q 016159          106 DLAG------------KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPII-IGCS-KGGTSIEDL  171 (394)
Q Consensus       106 ~a~~------------~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi-~~s~-~GGv~iE~~  171 (394)
                      ...+            ++++.          ...+...+|.||++ |.|+.|-+..+.  | -++ .+.+ ..|. .   
T Consensus       173 ~l~~~~~~~i~~~~~~~~l~~----------~~~~~~llvMeyL~-G~EySVD~l~~~--G-~viaaV~R~K~G~-~---  234 (329)
T PF15632_consen  173 ALFEPDSRRISLDELLAALQR----------SEEFPPLLVMEYLP-GPEYSVDCLADE--G-RVIAAVPRRKLGR-R---  234 (329)
T ss_pred             HhcCCCcceeCHHHHHHHHhc----------cCCCCCcEEecCCC-CCeEEEEEEecC--C-EEEEEEEEEecCc-e---
Confidence            3222            11211          12347899999999 899999999987  3 343 3331 1221 1   


Q ss_pred             cccCCCeEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceee
Q 016159          172 AEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAE  238 (394)
Q Consensus       172 ~~~~pd~i~~~~v~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv  238 (394)
                              ..+--++   --.+.|+++++.+|+.+.-.-|+.        .-.+....+|||||..-
T Consensus       235 --------q~l~~~~---~l~e~a~~l~~~~~l~g~~NiQ~r--------~d~~g~p~LLEINpR~s  282 (329)
T PF15632_consen  235 --------QVLENDE---ELIELARRLAEAFGLDGLFNIQFR--------YDEDGNPKLLEINPRPS  282 (329)
T ss_pred             --------eEEEECH---HHHHHHHHHHHHhCCCceEEEEEE--------EcCCCCEEEEEeCCCCc
Confidence                    1111111   012567788888887542111111        00123467999999865

>PRK06849 hypothetical protein; Provisional

Probab=98.27  E-value=3.1e-06  Score=85.96  Aligned_cols=93  Identities=15%  Similarity=0.151  Sum_probs=65.2

Q ss_pred             hhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHh-CCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159           25 LRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE  102 (394)
Q Consensus        25 ~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~l-g~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e  102 (394)
                      .-.+..+++..++++++.|||+|++..+.+++++.+++.+. +   +|+|+||....+  |         .||.+. +.+
T Consensus       110 ~~~~~~DK~~~~~~~~~~GipvP~t~~v~~~~~l~~~~~~~~~---~P~vlKP~~~~~--~---------~~v~~~~~~~  175 (389)
T PRK06849        110 LLLLLHNKWEFAEQARSLGLSVPKTYLITDPEAIRNFMFKTPH---TPYVLKPIYSRF--V---------RRVDLLPKEA  175 (389)
T ss_pred             HHHHhhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHhhcCCC---CcEEEEeCcccC--C---------CeEEEecCHH
Confidence            33455788999999999999999999999999998887775 5   899999965322  1         367777 733


Q ss_pred             HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEE
Q 016159          103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIM  148 (394)
Q Consensus       103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~  148 (394)
                      ++.    .+   ..        . .-..++|||+++ |.|+.+-..
T Consensus       176 ~l~----~~---~~--------~-~~~~~ivQe~I~-G~e~~~~~~  204 (389)
T PRK06849        176 ALK----EL---PI--------S-KDNPWVMQEFIQ-GKEYCSYSI  204 (389)
T ss_pred             Hhc----cc---cc--------C-CCCCeEEEEEec-CCeEEEEEE
Confidence            221    11   00        0 113689999999 567644433

>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]

Probab=98.21  E-value=1e-05  Score=80.40  Aligned_cols=105  Identities=21%  Similarity=0.213  Sum_probs=76.1

Q ss_pred             HHhhhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHH-HhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC
Q 016159           21 QQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQ-DAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV   99 (394)
Q Consensus        21 ~~~~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~-~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~   99 (394)
                      |..|.-+..-.+..+-++|.+.|+|+|++.++.+++++....+ .+|   +|+|+||-.  |..|+         ||.++
T Consensus       109 N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~g---~pvVlKp~~--Gs~G~---------gV~~v  174 (318)
T COG0189         109 NDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHLG---FPVVLKPLD--GSGGR---------GVFLV  174 (318)
T ss_pred             CCHHHHHhhhhHHHHHHHHHhcCCCCCCEEEEcCHHHHHHHHHHhcC---CCEEEeeCC--CCCcc---------ceEEe
Confidence            3344445556778889999999999999999999866655554 556   899999954  43444         68888


Q ss_pred             -CHH-HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          100 -KKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       100 -s~e-e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                       |.+ ++.+..+.+.+..            .+.+++|||++.....+..+....
T Consensus       175 ~~~d~~l~~~~e~~~~~~------------~~~~ivQeyi~~~~~~~rrivv~~  216 (318)
T COG0189         175 EDADPELLSLLETLTQEG------------RKLIIVQEYIPKAKRDDRRVLVGG  216 (318)
T ss_pred             cCCChhHHHHHHHHhccc------------cceEehhhhcCcccCCcEEEEEeC
Confidence             887 7777766664321            136899999987776666666553

>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]

Probab=98.13  E-value=1.7e-05  Score=77.16  Aligned_cols=86  Identities=21%  Similarity=0.200  Sum_probs=67.6

Q ss_pred             cCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccc
Q 016159           42 YGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQ  120 (394)
Q Consensus        42 ~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q  120 (394)
                      .|+|+.++..+.|.+|..++++++|   ||+|+||.....|+|           =.++ ++|++.++|+.......    
T Consensus       125 LglpTs~Y~fa~s~~e~~~a~~~iG---fPcvvKPvMSSSGkG-----------qsvv~~~e~ve~AW~~A~~g~R----  186 (394)
T COG0027         125 LGLPTSKYRFADSLEELRAAVEKIG---FPCVVKPVMSSSGKG-----------QSVVRSPEDVEKAWEYAQQGGR----  186 (394)
T ss_pred             hCCCCccccccccHHHHHHHHHHcC---CCeecccccccCCCC-----------ceeecCHHHHHHHHHHHHhcCC----
Confidence            5999999999999999999999999   999999977654433           2345 99999999998753321    


Q ss_pred             cCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159          121 TGPQGKIVSKVYLCEKLSLVNEMYFAIMLD  150 (394)
Q Consensus       121 ~~~~g~~v~~vlVee~v~~~~E~ylgi~~D  150 (394)
                          |. -..|+||++++...|+.+-..+.
T Consensus       187 ----~~-~~RVIVE~fv~fd~EiTlLtvr~  211 (394)
T COG0027         187 ----GG-SGRVIVEEFVKFDFEITLLTVRA  211 (394)
T ss_pred             ----CC-CCcEEEEEEecceEEEEEEEEEE
Confidence                21 25899999999888876655443

>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional

Probab=98.13  E-value=3.5e-05  Score=77.28  Aligned_cols=101  Identities=13%  Similarity=0.098  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHH
Q 016159           32 EYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGK  110 (394)
Q Consensus        32 E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~  110 (394)
                      ++...++|.++||++|+...  +++       ++.   +||+|||....|.=|+         |+.++ |++|+...+++
T Consensus       127 Kk~~yk~L~~aGI~~Pk~~~--~p~-------eId---~PVIVKp~~asG~~sr---------G~f~a~s~eEl~~~a~~  185 (366)
T PRK13277        127 EKNYYWLLEKAGIPYPKLFK--DPE-------EID---RPVIVKLPEAKRRLER---------GFFTASSYEDFYEKSEE  185 (366)
T ss_pred             HHHHHHHHHHcCCCCceeec--Ccc-------ccC---ccEEEEECCCCCcccc---------CeEeeCCHHHHHHHHHh
Confidence            34444599999999998765  443       455   8999999754431123         68888 99999988888


Q ss_pred             HhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159          111 MLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC  161 (394)
Q Consensus       111 ~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s  161 (394)
                      +.....++.      ...+..+||||+. |.|+++-+..|+-.+ -+.++|
T Consensus       186 l~~~g~I~~------~~~~~~iIQEyI~-G~ey~~d~F~s~l~g-~ve~l~  228 (366)
T PRK13277        186 LIKAGVIDR------EDLKNARIEEYVI-GAHFNFNYFYSPIRD-RLELLG  228 (366)
T ss_pred             hhhcCcccc------cccccceeEeccC-CCEEEEEEEEeccCC-cEEEEE
Confidence            754332221      1236789999998 899999999997544 355554

>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]

Probab=97.75  E-value=0.00042  Score=68.86  Aligned_cols=97  Identities=13%  Similarity=0.072  Sum_probs=72.3

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCC----HHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVAS----VDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE  102 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s----~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e  102 (394)
                      .......+|.+++..|+|++++...+.    .....+....++   +|++|||.-.  |..-         |+..+ +.+
T Consensus       100 ~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~---~p~~Vkp~~~--gSSv---------g~~~v~~~~  165 (317)
T COG1181         100 GAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLG---FPLFVKPARE--GSSV---------GRSPVNVEG  165 (317)
T ss_pred             hcccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhhcccC---CCEEEEcCCc--ccee---------eEEEeeecc
Confidence            345678899999999999999988764    233445555666   9999999642  2222         56667 788


Q ss_pred             HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +.+++.+..+...             +.+++|+++. ++|+.+++..+..
T Consensus       166 d~~~~~e~a~~~d-------------~~vl~e~~~~-~rei~v~vl~~~~  201 (317)
T COG1181         166 DLQSALELAFKYD-------------RDVLREQGIT-GREIEVGVLGNDY  201 (317)
T ss_pred             chHHHHHHHHHhC-------------CceeeccCCC-cceEEEEecCCcc
Confidence            8888666665432             5899999999 9999999998855

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=97.67  E-value=6.2e-05  Score=84.78  Aligned_cols=151  Identities=19%  Similarity=0.293  Sum_probs=98.8

Q ss_pred             eCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCCCcccce
Q 016159           52 VASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSK  130 (394)
Q Consensus        52 ~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~  130 (394)
                      +++++|..++|+.+|   ||+.+|+.  -||-||         |++-+ +.|+.+..+++..+..        +|   +.
T Consensus       225 v~~~eegLeaae~IG---fPvMIKAS--EGGGGK---------GIRkv~n~ddF~~lf~qv~~Ev--------PG---SP  279 (2196)
T KOG0368|consen  225 VRNVEEGLEAAEKIG---FPVMIKAS--EGGGGK---------GIRKVENEDDFKALFKQVQNEV--------PG---SP  279 (2196)
T ss_pred             cCCHHHHHHHHHhcC---CceEEEec--cCCCCc---------ceeeccchHHHHHHHHHHHhhC--------CC---Cc
Confidence            578999999999999   99999994  366688         79999 9999999999986543        45   67


Q ss_pred             EEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEE-ecCCCCCCC----HHHHHHHHHhCCCC
Q 016159          131 VYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKV-PIDVFNGIT----DEDAAKVVDGLAPK  205 (394)
Q Consensus       131 vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~-~v~p~~gl~----~~~a~~l~~~lg~~  205 (394)
                      ++|.+-.+..+.+.+.+..|.-.  -+|... .=.+.|   +++| ++|... |+.....-+    +..|.++++..|+-
T Consensus       280 IFlMK~a~~ARHlEVQlLaDqYG--n~IsLf-gRDCSi---QRRh-QKIIEEAPatIap~etf~~Me~~AvrLak~VGYv  352 (2196)
T KOG0368|consen  280 IFLMKLADQARHLEVQLLADQYG--NVISLF-GRDCSI---QRRH-QKIIEEAPATIAPPETFKKMEQAAVRLAKLVGYV  352 (2196)
T ss_pred             eeeeecccCcceeeeehhhhhcC--CEeEee-cccchH---HHHH-HHHHhhCCcccCCHHHHHHHHHHHHHHHHhhcce
Confidence            89999999899999999999754  455443 224554   5555 555543 322210000    02334444444542


Q ss_pred             cccHHHHHHHHHHHHHHhhcCCcceeeecceeeccC
Q 016159          206 VADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSG  241 (394)
Q Consensus       206 ~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~  241 (394)
                      .      +.+++-||.. .+.....||+||...-++
T Consensus       353 S------AGTVEYLYsp-~d~~fyFLELNPRLQVEH  381 (2196)
T KOG0368|consen  353 S------AGTVEYLYSP-DDGEYYFLELNPRLQVEH  381 (2196)
T ss_pred             e------cceEEEEEec-CCCcEEEEecCccccccC
Confidence            2      1222222322 134567899999988654

>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []

Probab=97.19  E-value=0.0008  Score=60.09  Aligned_cols=82  Identities=20%  Similarity=0.269  Sum_probs=37.0

Q ss_pred             CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHH
Q 016159           31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAG  109 (394)
Q Consensus        31 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~  109 (394)
                      +++...++|++.|||+|.......++.       ..   +|+|+||..-.||  .         |+.+. +.+++.....
T Consensus         3 dK~~~~~~L~~~gi~~P~~~~~~~~~~-------~~---~~~viKp~~G~Gg--~---------~i~~~~~~~~~~~~~~   61 (161)
T PF02655_consen    3 DKLKTYKFLKELGIPVPTTLRDSEPEP-------ID---GPWVIKPRDGAGG--E---------GIRIVDSEDELEEFLN   61 (161)
T ss_dssp             SHHHHHHHHTTT-S--------EESS---------S---SSEEEEESS------------------B--SS--TTE----
T ss_pred             CHHHHHHHHHccCCCCCCccccccccc-------cC---CcEEEEeCCCCCC--C---------CeEEECCchhhccccc
Confidence            567889999999999993222221111       12   7999999643332  2         45555 5544332111


Q ss_pred             HHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          110 KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       110 ~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                                         ...++||+++ |.++.+.+..+...
T Consensus        62 -------------------~~~i~Qe~i~-G~~~Sv~~l~~~~~   85 (161)
T PF02655_consen   62 -------------------KLRIVQEFIE-GEPYSVSFLASGGG   85 (161)
T ss_dssp             ----------------------EEEE----SEEEEEEEEE-SSS
T ss_pred             -------------------cceEEeeeeC-CEEeEEEEEEeCCc
Confidence                               1128999998 89999999888654

This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=97.15  E-value=0.00028  Score=76.92  Aligned_cols=133  Identities=21%  Similarity=0.312  Sum_probs=98.5

Q ss_pred             HHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhccccc
Q 016159           39 MAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILV  117 (394)
Q Consensus        39 L~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~  117 (394)
                      |.+.+.++.++..+.+.|||.++++++|   |||++.+...-||-|.         |  ++ +.+|+.+.+..-+..+  
T Consensus       506 m~ei~e~ia~s~a~~sie~al~aae~l~---ypvivRaayalgglgS---------g--fa~n~eeL~~l~~~a~a~s--  569 (1435)
T KOG0370|consen  506 LNEINEKIAPSEAVSTIEEALEAAERLG---YPVIVRAAYALGGLGS---------G--FANNEEELQDLAAQALALS--  569 (1435)
T ss_pred             HHhhcccccchhhHhHHHHHHHHHHhcC---cHHHHHHHHHhcCccc---------c--ccccHHHHHHHHhhccccC--
Confidence            3456899999999999999999999998   9999998766676553         2  56 8999988877766543  


Q ss_pred             ccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEE---EecCCCCCCCHHH
Q 016159          118 TKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVK---VPIDVFNGITDED  194 (394)
Q Consensus       118 ~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~---~~v~p~~gl~~~~  194 (394)
                                 .++|||+.+.+++|...-+.+|...  -+|.++.     .|.++   |--+++   +-+.|...+++++
T Consensus       570 -----------~QilvekSlkGwkevEyevvrDa~~--nciTvcn-----men~D---plgihtGdSiVvapsqtlsd~e  628 (1435)
T KOG0370|consen  570 -----------PQILVEKSLKGWKEVEYEVVRDAYD--NCITVCN-----MENFD---PLGIHTGDSIVVAPSQTLSDEE  628 (1435)
T ss_pred             -----------ceeeehhhhccccceEEEEEecccc--chhhhcC-----CcccC---cceeeccceEEEeeccccChHH
Confidence                       5899999999999999999999876  4777774     34443   333333   3467887787743


Q ss_pred             H-------HHHHHhCCCCccc
Q 016159          195 A-------AKVVDGLAPKVAD  208 (394)
Q Consensus       195 a-------~~l~~~lg~~~~~  208 (394)
                      -       .+++++||..++.
T Consensus       629 y~mlrttaikVirhlgvvGEc  649 (1435)
T KOG0370|consen  629 YQMLRTTAIKVIRHLGVVGEC  649 (1435)
T ss_pred             HHHHHhcchhheeccCCcccc
Confidence            2       3446777766543

>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein

Probab=96.97  E-value=0.0048  Score=61.26  Aligned_cols=73  Identities=22%  Similarity=0.300  Sum_probs=51.7

Q ss_pred             hcccccchhhHHhhhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCC
Q 016159           11 SRSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGL   85 (394)
Q Consensus        11 ~~~~~~~~~~~~~~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK   85 (394)
                      .|++.++-++|+.....+.=+++.+..+|+++|||+|+...+.+.+.+.+...++-.+..|||+||..  |..|+
T Consensus        17 ~~~~~~~~~~N~r~~~~~~~DK~~t~~lL~~aglpvP~T~~~~s~~~~~~~l~~~~~~~~~VVVKPl~--Gs~Gr   89 (317)
T TIGR02291        17 KRNADYILRYNKRSLYPLVDDKLKTKIIAQAAGITVPELYGVIHNQAEVKTIHNIVKDHPDFVIKPAQ--GSGGK   89 (317)
T ss_pred             cchHHHHHhcCCchhccccccHHHHHHHHHHcCCCCCCEEEecCchhhHHHHHHHHccCCCEEEEECC--CCCcc
Confidence            35566667776666656666788999999999999999998888775555555441011379999965  54555

Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.

>PLN02941 inositol-tetrakisphosphate 1-kinase

Probab=96.96  E-value=0.0038  Score=62.36  Aligned_cols=91  Identities=18%  Similarity=0.144  Sum_probs=62.9

Q ss_pred             CCHHHHHHHHHHcC-------CCCCCceeeCCHHHHH---HHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC
Q 016159           30 IHEYQGAELMAKYG-------INVPKGLAVASVDEVK---KAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV   99 (394)
Q Consensus        30 L~E~~aK~lL~~~G-------Ipvp~~~~~~s~eea~---~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~   99 (394)
                      .+....-.+|++.|       ||+|+..++.+.+.+.   ....+++   +|+|+||..-+ |..++       .++.+.
T Consensus       106 ~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~---~P~V~KPl~g~-Gss~g-------h~m~lv  174 (328)
T PLN02941        106 HNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLK---FPLVAKPLVAD-GSAKS-------HKMSLA  174 (328)
T ss_pred             HHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCC---CCEEEeecccC-CCccc-------cceEEe
Confidence            55667778899999       9999999999987755   3334566   99999997643 23332       478888


Q ss_pred             -CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCC-CeeEEEEEEEec
Q 016159          100 -KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLDR  151 (394)
Q Consensus       100 -s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~-~~E~ylgi~~Dr  151 (394)
                       +++++..         +        +   ..+++|||+.+ ++-+-+=+.-|+
T Consensus       175 ~~~~~L~~---------l--------~---~p~~lQEfVnh~g~d~RVfVvGd~  208 (328)
T PLN02941        175 YDQEGLSK---------L--------E---PPLVLQEFVNHGGVLFKVYVVGDY  208 (328)
T ss_pred             cCHHHHHh---------c--------C---CcEEEEEecCCCCEEEEEEEECCE
Confidence             8877664         1        1   14899999976 444444444443

>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]

Probab=96.78  E-value=0.0057  Score=60.02  Aligned_cols=89  Identities=24%  Similarity=0.339  Sum_probs=67.4

Q ss_pred             HHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcc
Q 016159           36 AELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQ  114 (394)
Q Consensus        36 K~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~  114 (394)
                      ..||.+.||+.|+  ...+|||.       .   .||+||.+...|  |+         |..++ |++|..+.+++++..
T Consensus       129 ~~lLekAgi~~P~--~~~~PeeI-------d---r~VIVK~pgAkg--gR---------GyFiA~s~eef~ek~e~l~~~  185 (361)
T COG1759         129 YKLLEKAGLRIPK--KYKSPEEI-------D---RPVIVKLPGAKG--GR---------GYFIASSPEEFYEKAERLLKR  185 (361)
T ss_pred             HHHHHHcCCCCCc--ccCChHHc-------C---CceEEecCCccC--Cc---------eEEEEcCHHHHHHHHHHHHHc
Confidence            5799999999997  56788874       3   699999976545  33         57788 999999999999876


Q ss_pred             cccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCC
Q 016159          115 ILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTA  154 (394)
Q Consensus       115 ~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~  154 (394)
                      -.++.      +-.+...||||+- |.-+|+-....+-.+
T Consensus       186 gvi~~------edlkna~IeEYv~-G~~f~~~yFyS~i~~  218 (361)
T COG1759         186 GVITE------EDLKNARIEEYVV-GAPFYFHYFYSPIKD  218 (361)
T ss_pred             CCcch------hhhhhceeeEEee-ccceeeeeeeccccC
Confidence            55432      2346889999986 667777766655543

>PRK12458 glutathione synthetase; Provisional

Probab=95.84  E-value=0.039  Score=55.33  Aligned_cols=93  Identities=13%  Similarity=0.163  Sum_probs=57.5

Q ss_pred             hhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCC-cEEEEEeeecCCCCCCcccCCCcccEEEC-CH
Q 016159           24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK-ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK  101 (394)
Q Consensus        24 ~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~-PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~  101 (394)
                      +.-+..-++.....+++   +++|+..+..+++++.+..++++   + |+|+||..-.||+           ||.+. +.
T Consensus       122 ~~i~~~~dK~~~~~l~~---~~vP~T~v~~~~~~~~~~~~~~~---~~pvVvKPl~G~gG~-----------gV~~v~~~  184 (338)
T PRK12458        122 DGLRIANNKLYFQSFPE---EVRPTTHISRNKEYIREFLEESP---GDKMILKPLQGSGGQ-----------GVFLIEKS  184 (338)
T ss_pred             HHHHhccCHHHHHhhcc---CCCCCEEEeCCHHHHHHHHHHcC---CCeEEEEECCCCCcc-----------CeEEEecC
Confidence            33344455555555444   68999999999999999988885   4 5999996544433           46555 33


Q ss_pred             H--HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCC--CeeEEEEE
Q 016159          102 E--EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL--VNEMYFAI  147 (394)
Q Consensus       102 e--e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~--~~E~ylgi  147 (394)
                      +  .+.+..+.+..           .   ..+++|||++.  +.|+.+-+
T Consensus       185 ~~~~~~~ile~~~~-----------~---~~~ivQeyI~~~~~gDiRv~v  220 (338)
T PRK12458        185 AQSNLNQILEFYSG-----------D---GYVIAQEYLPGAEEGDVRILL  220 (338)
T ss_pred             ChhhHHHHHHHHhh-----------C---CCEEEEEcccCCCCCCEEEEE
Confidence            3  23333332211           1   36899999973  34554443

>COG3919 Predicted ATP-grasp enzyme [General function prediction only]

Probab=95.83  E-value=0.025  Score=55.27  Aligned_cols=96  Identities=18%  Similarity=0.199  Sum_probs=61.9

Q ss_pred             HHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeee----cCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHh
Q 016159           38 LMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQIL----AGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKML  112 (394)
Q Consensus        38 lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~----~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l  112 (394)
                      ...++|+|+|+.+.++|..++  .+.++-   +|+++||..-    .-+|.|          +... |.||.+.++...-
T Consensus       121 ra~elgl~~P~Ty~v~S~~d~--~~~el~---FPvILKP~mgg~~~~~araK----------a~~a~d~ee~k~a~~~a~  185 (415)
T COG3919         121 RAEELGLPYPKTYLVNSEIDT--LVDELT---FPVILKPGMGGSVHFEARAK----------AFTAADNEEMKLALHRAY  185 (415)
T ss_pred             HHHHhCCCCcceEEecchhhh--hhhhee---eeEEecCCCCCcceeehhhh----------eeeccCHHHHHHHHHHHH
Confidence            345689999999999975554  445664   8999999541    112222          3344 8888887766653


Q ss_pred             cccccccccCCCCcccceEEEEeeeCCCee--EEEEEEEeccCCceeeeec
Q 016159          113 GQILVTKQTGPQGKIVSKVYLCEKLSLVNE--MYFAIMLDRKTAGPIIIGC  161 (394)
Q Consensus       113 ~~~l~~~q~~~~g~~v~~vlVee~v~~~~E--~ylgi~~Dr~~~~Pvi~~s  161 (394)
                      +.-         |  .+.++||||+++|.|  +......|.  +.||.+|.
T Consensus       186 eei---------g--pDnvvvQe~IPGGgE~qfsyaAlw~~--g~pvaeft  223 (415)
T COG3919         186 EEI---------G--PDNVVVQEFIPGGGENQFSYAALWDK--GHPVAEFT  223 (415)
T ss_pred             Hhc---------C--CCceEEEEecCCCCcccchHHHHHhC--CCchhhhh
Confidence            321         2  268999999998766  334444454  34776664

>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp

Probab=95.13  E-value=0.06  Score=52.76  Aligned_cols=70  Identities=19%  Similarity=0.345  Sum_probs=48.9

Q ss_pred             cccccchhhHHhhhhccCCCHHHHHHHHHHcCCCCCCcee-----------eCCHHHHHHHHHHhCCCCCcEEEEEeeec
Q 016159           12 RSLTVAGQWQQQQLRRLNIHEYQGAELMAKYGINVPKGLA-----------VASVDEVKKAIQDAFPDHKELVVKSQILA   80 (394)
Q Consensus        12 ~~~~~~~~~~~~~~~~m~L~E~~aK~lL~~~GIpvp~~~~-----------~~s~eea~~~a~~lg~~~~PvVvK~q~~~   80 (394)
                      ++...+.++|+.....+.=++...++++.++|||+|+...           ..+.++..+..+...  ..++|+||..  
T Consensus         7 ~~~~~~~~~N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~viKP~~--   82 (285)
T PF14397_consen    7 RNFDYIKRYNPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHA--PDRFVIKPAN--   82 (285)
T ss_pred             HHHHHHHhcCchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhcc--CCcEEEEeCC--
Confidence            4455667776665556666799999999999999999321           235667777776651  1589999965  


Q ss_pred             CCCCC
Q 016159           81 GGRGL   85 (394)
Q Consensus        81 ggRgK   85 (394)
                      |..|+
T Consensus        83 G~~G~   87 (285)
T PF14397_consen   83 GSGGK   87 (285)
T ss_pred             CCCcc
Confidence            33355

>TIGR01380 glut_syn glutathione synthetase, prokaryotic

Probab=94.15  E-value=0.27  Score=48.61  Aligned_cols=81  Identities=15%  Similarity=0.248  Sum_probs=50.8

Q ss_pred             HcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC--CHHHHHHHHHHHhcccccc
Q 016159           41 KYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KKEEVEDLAGKMLGQILVT  118 (394)
Q Consensus        41 ~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~--s~ee~~~a~~~~l~~~l~~  118 (394)
                      .+..++|+..+..+++++.+..++.|    |+|+||..-.+  |+         ||...  +..++....+ .+..    
T Consensus       129 ~~~~~vP~T~v~~~~~~~~~~~~~~g----~vVvKPl~G~~--G~---------gv~~v~~~~~~~~~~~~-~~~~----  188 (312)
T TIGR01380       129 QFPKVIPPTLVTRDKAEIRAFLAEHG----DIVLKPLDGMG--GE---------GIFRLDPGDPNFNSILE-TMTQ----  188 (312)
T ss_pred             hCcCCCCCEEEeCCHHHHHHHHHHcC----CEEEEECCCCC--Cc---------eEEEEcCCCccHHHHHH-HHHh----
Confidence            34458999999899999999999884    89999976433  43         45433  3323322222 2111    


Q ss_pred             cccCCCCcccceEEEEeeeCC--CeeEEEEEE
Q 016159          119 KQTGPQGKIVSKVYLCEKLSL--VNEMYFAIM  148 (394)
Q Consensus       119 ~q~~~~g~~v~~vlVee~v~~--~~E~ylgi~  148 (394)
                           .+.  ..+++|||++.  +.++.+-+.
T Consensus       189 -----~~~--~~~~vQ~yI~~~~~~D~Rv~vv  213 (312)
T TIGR01380       189 -----RGR--EPVMAQRYLPEIKEGDKRILLI  213 (312)
T ss_pred             -----ccC--CcEEEEeccccccCCCEEEEEE
Confidence                 011  47999999973  457666554

This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.

>PRK05246 glutathione synthetase; Provisional

Probab=94.12  E-value=0.26  Score=48.83  Aligned_cols=77  Identities=14%  Similarity=0.194  Sum_probs=49.6

Q ss_pred             CCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC--CHHHHHHHHHHHhcccccccccC
Q 016159           45 NVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KKEEVEDLAGKMLGQILVTKQTG  122 (394)
Q Consensus        45 pvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~--s~ee~~~a~~~~l~~~l~~~q~~  122 (394)
                      ++|+..+..+++++.+..++.+    |+|+||..-.+  |+         ||...  +..++....+.+ ...       
T Consensus       134 ~vP~T~~~~~~~~~~~~~~~~~----~vVlKP~~G~~--G~---------gV~~i~~~~~~~~~~~~~l-~~~-------  190 (316)
T PRK05246        134 LMPPTLVTRDKAEIRAFRAEHG----DIILKPLDGMG--GA---------GIFRVKADDPNLGSILETL-TEH-------  190 (316)
T ss_pred             cCCCEEEeCCHHHHHHHHHHCC----CEEEEECCCCC--cc---------ceEEEeCCCccHHHHHHHH-HHc-------
Confidence            7999999999999999998884    89999976443  43         35444  333333222222 110       


Q ss_pred             CCCcccceEEEEeeeCC--CeeEEEEEE
Q 016159          123 PQGKIVSKVYLCEKLSL--VNEMYFAIM  148 (394)
Q Consensus       123 ~~g~~v~~vlVee~v~~--~~E~ylgi~  148 (394)
                        +  -..+++|++++.  +.++.+-+.
T Consensus       191 --~--~~~~lvQ~~I~~~~~~D~Rv~vv  214 (316)
T PRK05246        191 --G--REPVMAQRYLPEIKEGDKRILLV  214 (316)
T ss_pred             --c--CCeEEEEeccccCCCCCEEEEEE
Confidence              1  147999999964  456665554

>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A

Probab=93.99  E-value=0.28  Score=42.95  Aligned_cols=79  Identities=19%  Similarity=0.305  Sum_probs=56.0

Q ss_pred             CCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHH
Q 016159          291 DGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNA  370 (394)
Q Consensus       291 ~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a  370 (394)
                      +|+|++++.-|+++...+|.+...|--..-++-+|..++. .+.+.++.+..||++++|++.+= ++.+.    +...++
T Consensus         1 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv-~~~d~l~~~~~D~~t~~I~ly~E-~~~d~----~~f~~~   74 (138)
T PF13607_consen    1 PGGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADV-DFADLLEYLAEDPDTRVIVLYLE-GIGDG----RRFLEA   74 (138)
T ss_dssp             E-SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS--HHHHHHHHCT-SS--EEEEEES---S-H----HHHHHH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccC-CHHHHHHHHhcCCCCCEEEEEcc-CCCCH----HHHHHH
Confidence            4899999999999999999999999888889999998874 67889999999999999998775 34554    455556


Q ss_pred             HHHcC
Q 016159          371 AKQVS  375 (394)
Q Consensus       371 ~~~~~  375 (394)
                      .++..
T Consensus        75 ~~~a~   79 (138)
T PF13607_consen   75 ARRAA   79 (138)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            56553

>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6

Probab=92.16  E-value=0.47  Score=43.13  Aligned_cols=67  Identities=21%  Similarity=0.337  Sum_probs=37.9

Q ss_pred             CCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCC
Q 016159           46 VPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQ  124 (394)
Q Consensus        46 vp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~  124 (394)
                      +|+..+.++.+++.+..++.+   . +|+||....||+|-          .++. +.....+..+.+...          
T Consensus        12 ~P~T~vs~~~~~i~~f~~~~~---~-~VlKPl~g~gG~gV----------~~i~~~~~n~~~i~e~~~~~----------   67 (173)
T PF02955_consen   12 IPPTLVSRDKEEIRAFIEEHG---D-IVLKPLDGMGGRGV----------FRISRDDPNLNSILETLTKN----------   67 (173)
T ss_dssp             S--EEEES-HHHHHHHHHHHS---S-EEEEESS--TTTT-----------EEE-TT-TTHHHHHHHHTTT----------
T ss_pred             CcCEEEECCHHHHHHHHHHCC---C-EEEEECCCCCCcCE----------EEEcCCCCCHHHHHHHHHhc----------
Confidence            588999999999999999996   4 99999776665542          3333 433344433333222          


Q ss_pred             CcccceEEEEeeeC
Q 016159          125 GKIVSKVYLCEKLS  138 (394)
Q Consensus       125 g~~v~~vlVee~v~  138 (394)
                      +  -..+++|+|++
T Consensus        68 ~--~~~~mvQ~flp   79 (173)
T PF02955_consen   68 G--ERPVMVQPFLP   79 (173)
T ss_dssp             T--TS-EEEEE--G
T ss_pred             C--CccEEEEeccc
Confidence            1  15799999997

3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=91.90  E-value=1.3  Score=49.48  Aligned_cols=87  Identities=13%  Similarity=0.230  Sum_probs=66.4

Q ss_pred             HHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcc
Q 016159           36 AELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQ  114 (394)
Q Consensus        36 K~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~  114 (394)
                      -++|.+.||..|+|.-.++.+||...|++.|   ||+.+.|...-.  |-         ...++ +.++++...++.-.-
T Consensus      1038 S~~Ld~i~v~Qp~Wkelt~~~eA~~F~~~Vg---YP~lvRPSYVLS--Ga---------AMnv~~~~~dl~~~L~~A~~v 1103 (1435)
T KOG0370|consen 1038 SRMLDSIGVDQPAWKELTSLEEAKKFAEKVG---YPVLVRPSYVLS--GA---------AMNVVYSESDLKSYLEQASAV 1103 (1435)
T ss_pred             HHHHHHcCCCchhhhhhccHHHHHHHHHhcC---CceEecccceec--ch---------hhhhhhcHHHHHHHHHHHhhc
Confidence            4688899999999999999999999999999   999999954321  22         24456 888888776665321


Q ss_pred             cccccccCCCCcccceEEEEeeeCCCeeEEEEE
Q 016159          115 ILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI  147 (394)
Q Consensus       115 ~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi  147 (394)
                      .        +.   +.|.+.+|+...+|+-+-.
T Consensus      1104 s--------~d---hPVVisKfie~AkEidvDA 1125 (1435)
T KOG0370|consen 1104 S--------PD---HPVVISKFIEGAKEIDVDA 1125 (1435)
T ss_pred             C--------CC---CCEEhHHhhcccceechhh
Confidence            1        11   5789999999889976643

>PRK06091 membrane protein FdrA; Validated

Probab=91.00  E-value=1.5  Score=46.77  Aligned_cols=80  Identities=23%  Similarity=0.304  Sum_probs=67.3

Q ss_pred             CCceeEEecChhHHHHHHHHHHHcCCCccceeecCCC-----CCHHHHHHHHHHHhcCCCccEEEEEc-cCCCCChHHHH
Q 016159          291 DGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN-----ASEGQVVEAFKILTSDEKVKAILVNI-FGGIMKCDVIA  364 (394)
Q Consensus       291 ~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~-----a~~~~~~~a~~~~l~~~~v~~i~vni-~ggi~~~d~vA  364 (394)
                      +|+||+++--|+++...++++...|.-...++-+||.     +..-.+..+++.+..||++++|.+.+ +    +...+.
T Consensus       193 ~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kp----paE~v~  268 (555)
T PRK06091        193 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKP----PAEAVR  268 (555)
T ss_pred             CCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEec----CchHHH
Confidence            7999999999999999999999999999999999988     32345788999999999999999755 2    235666


Q ss_pred             HHHHHHHHHc
Q 016159          365 SGIVNAAKQV  374 (394)
Q Consensus       365 ~gii~a~~~~  374 (394)
                      +.++++++..
T Consensus       269 ~~fl~aar~~  278 (555)
T PRK06091        269 LKIINAMKAT  278 (555)
T ss_pred             HHHHHHHhhC
Confidence            7888888876

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=90.10  E-value=1.2  Score=44.32  Aligned_cols=66  Identities=15%  Similarity=0.280  Sum_probs=58.6

Q ss_pred             cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCC-CHHHHHHHHHHHhcCCCccEEEEEccC
Q 016159          290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNA-SEGQVVEAFKILTSDEKVKAILVNIFG  355 (394)
Q Consensus       290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a-~~~~~~~a~~~~l~~~~v~~i~vni~g  355 (394)
                      .+|+||+++--|+++...++.+...|.--.-++-+||++ ..-.+.+.++.+.+||+.++|++..=+
T Consensus       168 ~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~  234 (317)
T PTZ00187        168 KKGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEI  234 (317)
T ss_pred             CCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEec
Confidence            479999999999999999999999998889999999998 335688899999999999999974443

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=89.82  E-value=1.4  Score=43.21  Aligned_cols=67  Identities=15%  Similarity=0.279  Sum_probs=58.8

Q ss_pred             cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEccCC
Q 016159          290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFGG  356 (394)
Q Consensus       290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~vni~gg  356 (394)
                      .+|+|++++-.|+++...+|+....|--..-++-+|+.+. .-.+.+.++.+.+||++++|++.+=++
T Consensus       142 ~~G~ValiSQSG~l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~  209 (286)
T TIGR01019       142 KPGNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIG  209 (286)
T ss_pred             CCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecC
Confidence            3799999999999999999999999988889999999964 246778899999999999999866543

ATP citrate lyases appear to form an outgroup.

>PLN02522 ATP citrate (pro-S)-lyase

Probab=89.80  E-value=1.3  Score=47.97  Aligned_cols=88  Identities=16%  Similarity=0.134  Sum_probs=67.8

Q ss_pred             cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHH
Q 016159          290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV  368 (394)
Q Consensus       290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii  368 (394)
                      .+|+||+++-.|+++...+|.+...|---.-++-+||++. ...+.+.++.+.+||++++|++..==|+.+-...    +
T Consensus       166 ~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f----~  241 (608)
T PLN02522        166 RPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSL----V  241 (608)
T ss_pred             CCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHH----H
Confidence            4799999999999999999999999988888999999986 3567889999999999999997544133444444    4


Q ss_pred             HHHHHcCC-cceEE
Q 016159          369 NAAKQVSA-LDCFG  381 (394)
Q Consensus       369 ~a~~~~~~-~~~~~  381 (394)
                      +++++... |++..
T Consensus       242 ea~~~a~~~KPVVa  255 (608)
T PLN02522        242 EALKQGKVSKPVVA  255 (608)
T ss_pred             HHHHHhcCCCCEEE
Confidence            45555433 33443

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=88.84  E-value=1.4  Score=43.52  Aligned_cols=66  Identities=17%  Similarity=0.252  Sum_probs=58.8

Q ss_pred             cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCC--CCHHHHHHHHHHHhcCCCccEEEEEccCC
Q 016159          290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN--ASEGQVVEAFKILTSDEKVKAILVNIFGG  356 (394)
Q Consensus       290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~--a~~~~~~~a~~~~l~~~~v~~i~vni~gg  356 (394)
                      .+|+|++++--|++++..+|+....|--..-++-+|+.  ++ -.+...++.+.+||++++|++.+=+|
T Consensus       149 ~~G~ValiSQSG~l~~~l~~~~~~~giG~S~~VS~Gn~~~ad-v~~~d~L~yl~~Dp~T~~I~ly~E~~  216 (300)
T PLN00125        149 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNG-TNFVDCLEKFVKDPQTEGIILIGEIG  216 (300)
T ss_pred             CCCcEEEEeCCccHHHHHHHHHHHcCCCeEEEEEeCCCCCCC-CCHHHHHHHHhhCCCCcEEEEEeccC
Confidence            37999999999999999999999999889999999999  77 35677899999999999999877654

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=88.58  E-value=1.9  Score=42.46  Aligned_cols=67  Identities=15%  Similarity=0.277  Sum_probs=58.4

Q ss_pred             cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCH-HHHHHHHHHHhcCCCccEEEEEccCC
Q 016159          290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASE-GQVVEAFKILTSDEKVKAILVNIFGG  356 (394)
Q Consensus       290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~-~~~~~a~~~~l~~~~v~~i~vni~gg  356 (394)
                      .+|+|++++-.|+++...+|+....|--..-++-+|+.++. -.....++.+..||++++|++.+=+.
T Consensus       144 ~~G~valiSQSGal~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~  211 (291)
T PRK05678        144 KKGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIG  211 (291)
T ss_pred             CCCCEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecC
Confidence            37999999999999999999999999888999999998542 45667899999999999999877643

>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria

Probab=86.69  E-value=2.6  Score=42.19  Aligned_cols=89  Identities=18%  Similarity=0.191  Sum_probs=63.3

Q ss_pred             HHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEECCHHHHHHHHHHHhccccccc
Q 016159           40 AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTK  119 (394)
Q Consensus        40 ~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~s~ee~~~a~~~~l~~~l~~~  119 (394)
                      .+-.=-|.++..+.|.++|..+++.+= ...||=+|+-...||||.          ..+.|.+++..+...+-...+   
T Consensus       108 ~~~~~~vL~G~tvFs~~DA~~A~~~LL-~~G~VRlKp~~a~gG~GQ----------~vv~~~~~Ld~~L~~~~~~~l---  173 (355)
T PF11379_consen  108 ERVRDAVLPGYTVFSREDARRAARRLL-RDGPVRLKPVHATGGRGQ----------QVVADADELDAALAALDDAEL---  173 (355)
T ss_pred             HHHhhhccCCccccCHHHHHHHHHHHh-ccCCeeeccCcccCCCCc----------eEecCHHHHHHHHHcCCHHHH---
Confidence            333334678888999999999999873 447999999877787764          433388999888887754443   


Q ss_pred             ccCCCCcccceEEEEeeeCCCeeEEEEEEE
Q 016159          120 QTGPQGKIVSKVYLCEKLSLVNEMYFAIML  149 (394)
Q Consensus       120 q~~~~g~~v~~vlVee~v~~~~E~ylgi~~  149 (394)
                             .-.++.+|+-+..-.-+.||-.+
T Consensus       174 -------~~~GlVLE~~L~~~~T~SVGqv~  196 (355)
T PF11379_consen  174 -------ARHGLVLEEDLEEVVTYSVGQVR  196 (355)
T ss_pred             -------HhCCEEEecccCCCceeeEEEEE
Confidence                   12578888888655666666543

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=85.95  E-value=3.2  Score=41.35  Aligned_cols=57  Identities=23%  Similarity=0.239  Sum_probs=39.1

Q ss_pred             CCCHHHHHHHHHHHhcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCc-ceEEeecce
Q 016159          327 NASEGQVVEAFKILTSDEKVKAILV--NIFGGIMKCDVIASGIVNAAKQVSAL-DCFGFHSNY  386 (394)
Q Consensus       327 ~a~~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~~d~vA~gii~a~~~~~~~-~~~~~~~~~  386 (394)
                      ..+.+.+.+.++.+..||++|+|++  |.|||.+-..+   -|.++++++.-+ ++..+=++|
T Consensus        79 ~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~---~i~~~l~~l~~~~PV~v~v~~~  138 (317)
T COG0616          79 FIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASE---LIARALKRLRAKKPVVVSVGGY  138 (317)
T ss_pred             cccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHH---HHHHHHHHHhhcCCEEEEECCe
Confidence            6678899999999999999999777  99999876443   333333333322 444444444

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=85.55  E-value=3.9  Score=42.62  Aligned_cols=73  Identities=22%  Similarity=0.291  Sum_probs=62.3

Q ss_pred             cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHH
Q 016159          290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIA  364 (394)
Q Consensus       290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA  364 (394)
                      .+|+|++++-.|+++...+|.....|--..-++-+|+.++ -.+...++.+..||++++|++.+= ++.+.....
T Consensus       149 ~~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~d-~~~~d~l~~l~~D~~t~~I~ly~E-~~~~~~~f~  221 (447)
T TIGR02717       149 KKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKAD-IDESDLLEYLADDPDTKVILLYLE-GIKDGRKFL  221 (447)
T ss_pred             CCCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCchhh-CCHHHHHHHHhhCCCCCEEEEEec-CCCCHHHHH
Confidence            3699999999999999999999999999999999999987 467789999999999999998765 355554433

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues []

Probab=85.54  E-value=2  Score=28.86  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=28.1

Q ss_pred             CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD   64 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~   64 (394)
                      -++.+-++.|.++||++|+..  .+.|++.+.+++
T Consensus         4 Ws~~~L~~wL~~~gi~~~~~~--~~rd~Ll~~~k~   36 (38)
T PF10281_consen    4 WSDSDLKSWLKSHGIPVPKSA--KTRDELLKLAKK   36 (38)
T ss_pred             CCHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHH
Confidence            456788999999999999987  788999888775

>PRK10727 DNA-binding transcriptional regulator GalR; Provisional

Probab=85.39  E-value=3.6  Score=40.39  Aligned_cols=90  Identities=17%  Similarity=0.182  Sum_probs=58.8

Q ss_pred             CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHH
Q 016159          292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA  364 (394)
Q Consensus       292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA  364 (394)
                      ++|+++....+..      -...+++..+|..+...+-.-++.+.+.-+++++-+++ .+..++||       ...|.+|
T Consensus       177 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~nD~~A  249 (343)
T PRK10727        177 TRIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFGEPDESGGEQAMTELLGRGRNFTAVA-------CYNDSMA  249 (343)
T ss_pred             ccEEEEeCCccccchHHHHHHHHHHHHHCCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEE-------EcCcHHH
Confidence            4788875332211      22457777777654322222355565665666665554 56788988       4568999


Q ss_pred             HHHHHHHHHcCCcc-----eEEeecceEE
Q 016159          365 SGIVNAAKQVSALD-----CFGFHSNYFC  388 (394)
Q Consensus       365 ~gii~a~~~~~~~~-----~~~~~~~~~~  388 (394)
                      -|++++++++++++     +.+|-++.+|
T Consensus       250 ~g~~~al~~~G~~vP~disVigfD~~~~~  278 (343)
T PRK10727        250 AGAMGVLNDNGIDVPGEISLIGFDDVLVS  278 (343)
T ss_pred             HHHHHHHHHcCCCCCcceeEEeecCcHHH
Confidence            99999999999864     7888877654

>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]

Probab=83.43  E-value=2.7  Score=41.96  Aligned_cols=31  Identities=6%  Similarity=-0.018  Sum_probs=23.6

Q ss_pred             ceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159          129 SKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC  161 (394)
Q Consensus       129 ~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s  161 (394)
                      .+++.|||++ |+-+.+++..+.+.- -++.+.
T Consensus       176 ~~~i~Qefi~-G~p~Svs~is~g~~a-~~la~N  206 (389)
T COG2232         176 PGFIFQEFIE-GRPVSVSFISNGSDA-LTLAVN  206 (389)
T ss_pred             cceehhhhcC-CceeEEEEEecCcce-EEEEEe
Confidence            5899999998 888899998887653 444444

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=83.11  E-value=4  Score=41.66  Aligned_cols=63  Identities=29%  Similarity=0.456  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHcCCCccceeecC---CCCCHHHHHHHHHHHhcCCCccEEEE-EccCCCCChHHHHHHHHHHHHHcCC
Q 016159          304 AMATMDIIKLHGGTPANFLDVG---GNASEGQVVEAFKILTSDEKVKAILV-NIFGGIMKCDVIASGIVNAAKQVSA  376 (394)
Q Consensus       304 ~m~t~D~i~~~gg~~aNflD~g---G~a~~~~~~~a~~~~l~~~~v~~i~v-ni~ggi~~~d~vA~gii~a~~~~~~  376 (394)
                      =++|.-.+...|.+|- |+|+=   .+-+++.+.+++.     |+.|+|+. |++|-.  ||+  +.|.+..+++++
T Consensus        84 fvATan~i~~~Ga~PV-FvDid~~T~nid~~~ie~aIt-----~~tKAIipVhl~G~~--~dm--~~i~~la~~~~l  150 (374)
T COG0399          84 FVATANAVLLVGAKPV-FVDIDPDTLNIDPDLIEAAIT-----PRTKAIIPVHLAGQP--CDM--DAIMALAKRHGL  150 (374)
T ss_pred             hHHHHHHHHHcCCeEE-EEecCCcccCCCHHHHHHHcc-----cCCeEEEEehhccCC--CCH--HHHHHHHHHcCC
Confidence            3578888888898885 88876   6678888888764     44889776 999854  555  556666666554

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=82.88  E-value=7.7  Score=37.97  Aligned_cols=82  Identities=20%  Similarity=0.359  Sum_probs=61.2

Q ss_pred             EEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEE-EccCCCCChHHHH
Q 016159          287 YIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILV-NIFGGIMKCDVIA  364 (394)
Q Consensus       287 y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~v-ni~ggi~~~d~vA  364 (394)
                      ++..+|+||+++--+.|+==..-.+...|.=-.--+-+||++- ...+..+|+++..||+.++|++ -=.||  +.++.|
T Consensus       141 ~i~~~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG--~aEe~A  218 (293)
T COG0074         141 NIYKPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGG--PAEEEA  218 (293)
T ss_pred             hhccCCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCC--cHHHHH
Confidence            4556899999999999988888888888876666778888875 4567789999999999999774 22333  245555


Q ss_pred             HHHHHH
Q 016159          365 SGIVNA  370 (394)
Q Consensus       365 ~gii~a  370 (394)
                      .-.|+.
T Consensus       219 A~~i~~  224 (293)
T COG0074         219 AEYIKA  224 (293)
T ss_pred             HHHHHH
Confidence            444444

>PRK09526 lacI lac repressor; Reviewed

Probab=82.78  E-value=9.2  Score=37.27  Aligned_cols=89  Identities=13%  Similarity=0.080  Sum_probs=57.0

Q ss_pred             CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHH
Q 016159          292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA  364 (394)
Q Consensus       292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA  364 (394)
                      ++|+++.+-.+..      ....+.+..+|.++...  ..++-+.+.-+++++-++ ..+.+++||       +..|.+|
T Consensus       182 ~~I~~l~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~A  252 (342)
T PRK09526        182 QRIALLAGPESSVSARLRLAGWLEYLTDYQLQPIAV--REGDWSAMSGYQQTLQMLREGPVPSAIL-------VANDQMA  252 (342)
T ss_pred             CeEEEEeCCCccccHHHHHHHHHHHHHHcCCCcceE--EeCCCchHHHHHHHHHHhcCCCCCcEEE-------EcCcHHH
Confidence            4888886433221      23456777777654322  224444444444444444 457789999       4568899


Q ss_pred             HHHHHHHHHcCCcc-----eEEeecceEEE
Q 016159          365 SGIVNAAKQVSALD-----CFGFHSNYFCL  389 (394)
Q Consensus       365 ~gii~a~~~~~~~~-----~~~~~~~~~~~  389 (394)
                      .|++++++++++++     +.+|-++.+|.
T Consensus       253 ~g~~~al~~~g~~vP~disvig~d~~~~~~  282 (342)
T PRK09526        253 LGVLRALHESGLRVPGQISVIGYDDTEDSS  282 (342)
T ss_pred             HHHHHHHHHcCCCCCCceEEEeeCCCchhc
Confidence            99999999999864     78887776554

>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp

Probab=82.73  E-value=47  Score=31.97  Aligned_cols=188  Identities=14%  Similarity=0.214  Sum_probs=97.3

Q ss_pred             CCCHHHHHHHHHHcC-CC--CCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCccc-CCCcccEEE------
Q 016159           29 NIHEYQGAELMAKYG-IN--VPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFK-SGLKGGVHI------   98 (394)
Q Consensus        29 ~L~E~~aK~lL~~~G-Ip--vp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~-~~~~GGV~l------   98 (394)
                      .+++++.-++|..+. +.  .|+..+.++++++.+...+.    .-|.|||..  |.+|+++.. .-..++..+      
T Consensus        16 ~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~~~l~~~L~~y----~~vylKP~~--Gs~G~gI~ri~~~~~~~~~~~~~~~   89 (262)
T PF14398_consen   16 FFDKWEVYKALSRDPELRPYLPETELLTSFEDLREMLNKY----KSVYLKPDN--GSKGKGIIRIEKKGGGYRIQYRNKK   89 (262)
T ss_pred             CCCHHHHHHHHHcCCcchhhCCCceEcCCHHHHHHHHHHC----CEEEEEeCC--CCCCccEEEEEEeCCEEEEEEccCC
Confidence            366777778888764 33  68998999999999998887    378999976  555666531 000012222      


Q ss_pred             ------C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCC------CeeEEEEEEEeccCCceeeeeccCCC
Q 016159           99 ------V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL------VNEMYFAIMLDRKTAGPIIIGCSKGG  165 (394)
Q Consensus        99 ------~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~------~~E~ylgi~~Dr~~~~Pvi~~s~~GG  165 (394)
                            . +.+++.....+.++.              +.++||+.++.      ...+.+-+..|...  ..-+.|    
T Consensus        90 ~~~~~~~~~~~~l~~~l~~~~~~--------------~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G--~W~vtg----  149 (262)
T PF14398_consen   90 KNVRRTFSSLEELEQFLKELLGK--------------RRYIIQQGIPLATYDGRPFDFRVLVQKNGSG--KWQVTG----  149 (262)
T ss_pred             ceeEEEeCCHHHHHHHHHHhcCC--------------CcEEEeCCccccccCCCeEEEEEEEEECCCC--CEEEEE----
Confidence                  2 567777666665433              35666666532      23455555554432  222222    


Q ss_pred             cceeeccccCCCeEEEEecCCCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcC-C--cceeeecceeeccCC
Q 016159          166 TSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCES-D--CTLLEINPLAETSGK  242 (394)
Q Consensus       166 v~iE~~~~~~pd~i~~~~v~p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~-d--~~~lEINPLvv~~~G  242 (394)
                      +-+-. +  .|+.+.+   +...|=+.....+++....-.....+.+.++...+.+...+. +  +-++=|+ +.++.+|
T Consensus       150 ~~~Rv-a--~~~~ivT---N~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGiD-l~iD~~g  222 (262)
T PF14398_consen  150 IVARV-A--KPGSIVT---NLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGID-LGIDKNG  222 (262)
T ss_pred             EEEEE-c--CCCCcee---ccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEEE-EEEcCCC
Confidence            00000 0  0111111   111111111111222211111233455556666666655443 3  3466666 7888899


Q ss_pred             cEEEeec
Q 016159          243 QLVAADA  249 (394)
Q Consensus       243 ~~~alDa  249 (394)
                      +++.+.+
T Consensus       223 ~iWliEv  229 (262)
T PF14398_consen  223 KIWLIEV  229 (262)
T ss_pred             CEEEEEE
Confidence            9888876

>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species

Probab=80.76  E-value=7.9  Score=35.88  Aligned_cols=55  Identities=20%  Similarity=0.208  Sum_probs=40.1

Q ss_pred             CCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEEeecceEE
Q 016159          327 NASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFGFHSNYFC  388 (394)
Q Consensus       327 ~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~~~~~~~~  388 (394)
                      ..+.+...++++-++. .|+.++|+       ...|.+|.++++++++.+.++     +.+|.++.++
T Consensus       156 ~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~~~~~~l~~~g~~ip~di~v~g~d~~~~~  216 (260)
T cd06286         156 CFTIEDGERIGHQLLKMKDRPDAIF-------TGSDEVAAGIITEAKKQGIRVPEDLAIIGFDNQPIS  216 (260)
T ss_pred             CCCHHHHHHHHHHHHcCCCCCCEEE-------EcchHHHHHHHHHHHHcCCCCCcceEEEeecCcccc
Confidence            3344555566666665 47888888       445678999999999999753     8888887654

This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.

>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism

Probab=80.74  E-value=5.9  Score=36.99  Aligned_cols=73  Identities=19%  Similarity=0.219  Sum_probs=46.3

Q ss_pred             HHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEE
Q 016159          308 MDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFG  381 (394)
Q Consensus       308 ~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~  381 (394)
                      .+.+..+|.+.-...-+.++.+.+..+++++-++ ++|.+++||       +..|.+|.|+++++++.+.++     +++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~g~~~~l~~~g~~ip~di~v~g  211 (268)
T cd06270         139 RDALAEAGIALDESLIIEGDFTEEGGYAAMQELLARGAPFTAVF-------CANDEMAAGAISALREHGISVPQDVSIIG  211 (268)
T ss_pred             HHHHHHcCCCCCcceEEECCCCHHHHHHHHHHHHhCCCCCCEEE-------EcCcHHHHHHHHHHHHcCCCCCCceeEEE
Confidence            3455555544322222344555566666665555 567899999       445789999999999998753     677


Q ss_pred             eecceE
Q 016159          382 FHSNYF  387 (394)
Q Consensus       382 ~~~~~~  387 (394)
                      |-++.+
T Consensus       212 ~d~~~~  217 (268)
T cd06270         212 FDDVLL  217 (268)
T ss_pred             ecCchH
Confidence            665543

Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi

>cd07014 S49_SppA Signal peptide peptidase A

Probab=80.71  E-value=6.2  Score=35.46  Aligned_cols=62  Identities=29%  Similarity=0.292  Sum_probs=40.3

Q ss_pred             ecCCCCCHHHHHHHHHHHhcCCCccEEEE--EccCCCCC-hHHHHHHHHHHHHHcCCcceEEeecc
Q 016159          323 DVGGNASEGQVVEAFKILTSDEKVKAILV--NIFGGIMK-CDVIASGIVNAAKQVSALDCFGFHSN  385 (394)
Q Consensus       323 D~gG~a~~~~~~~a~~~~l~~~~v~~i~v--ni~ggi~~-~d~vA~gii~a~~~~~~~~~~~~~~~  385 (394)
                      |..|..+.+.+.++++-+.+||++++|++  |.+||-.. ..++. .+++.+++.+-.+.--+||.
T Consensus        17 ~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~-~~i~~~~~~~kpVia~v~G~   81 (177)
T cd07014          17 DTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIR-AELAAARAAGKPVVASGGGN   81 (177)
T ss_pred             CCCCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHH-HHHHHHHhCCCCEEEEECCc
Confidence            66778889999999999999999999998  54555322 22222 23445554433334445654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	394
2fp4_B	395	Crystal Structure Of Pig Gtp-Specific Succinyl-Coa		4e-92
1eud_B	396	Crystal Structure Of Phosphorylated Pig Heart, Gtp-		1e-90
1euc_B	396	Crystal Structure Of Dephosphorylated Pig Heart, Gt		1e-90
1scu_B	388	The Crystal Structure Of Succinyl-Coa Synthetase Fr		1e-75
1cqi_B	385	Crystal Structure Of The Complex Of Adp And Mg2+ Wi		2e-75
1jll_B	388	Crystal Structure Analysis Of The E197betaa Mutant		7e-75
3ufx_B	397	Thermus Aquaticus Succinyl-coa Synthetase In Comple		1e-52

>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 395

Iteration: 1
 Score =  334 bits (857), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 175/348 (50%), Positives = 234/348 (67%), Gaps = 3/348 (0%)
Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
           +N+ EYQ  +LM+  G+ V +     + +E  +A +    + KE+V+K+QILAGGRG G 
Sbjct: 1   MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGV 58
Query: 88  FKSGLKGGVHIVKKEEV-EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
           F SGLKGGVH+ K  EV   LA +M+G  L TKQT  +G  V+KV + E L +  E Y A
Sbjct: 59  FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 118
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
           I++DR   GP+++G  +GG  IE++A   P +I K  ID+  GI D  A ++ + L    
Sbjct: 119 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 178
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266
             +N A +Q+KKLY LF + D T +E+NP  ET   Q+V  DAK+NFDDNA FRQK+IFA
Sbjct: 179 PLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 238
Query: 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG 326
           + D ++ +P E  AAK DL YIGLDG I C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 239 MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 298
Query: 327 NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
              E QV +AFK+LT+D KV+AILVNIFGGI+ C +IA+GI  A +++
Sbjct: 299 GVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACREL 346

>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart, Gtp-Specific Succinyl-Coa Synthetase Length = 396

Iteration: 1
 Score =  330 bits (845), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 174/348 (50%), Positives = 233/348 (66%), Gaps = 3/348 (0%)
Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
           +N+ EYQ  +LM+  G+ V +     + +E  +A +    + KE+V+K+QILAGGRG G 
Sbjct: 2   VNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGV 59
Query: 88  FKSGLKGGVHIVKKEEV-EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
           F SGLKGGVH+ K  EV   LA +M+G  L TKQT  +G  V+KV + E L +  E Y A
Sbjct: 60  FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 119
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
           I++DR   GP+++G  +GG  IE++A   P +I K  ID+  GI D  A ++ + L    
Sbjct: 120 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 179
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266
             +N A +Q+KKLY LF + D T +E+NP  ET   Q+V  DAK+NFDDNA FRQK+IFA
Sbjct: 180 PLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 239
Query: 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG 326
           + D ++ +P E  AAK DL YIGLDG I C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 240 MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 299
Query: 327 NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
              E QV +AFK+LT+D KV+AILVNIFGGI+   +IA+GI  A +++
Sbjct: 300 GVKESQVYQAFKLLTADPKVEAILVNIFGGIVNXAIIANGITKAXREL 347

>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 396

Iteration: 1
 Score =  329 bits (844), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 174/348 (50%), Positives = 233/348 (66%), Gaps = 3/348 (0%)
Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
           +N+ EYQ  +LM+  G+ V +     + +E  +A +    + KE+V+K+QILAGGRG G 
Sbjct: 2   VNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGV 59
Query: 88  FKSGLKGGVHIVKKEEV-EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
           F SGLKGGVH+ K  EV   LA +M+G  L TKQT  +G  V+KV + E L +  E Y A
Sbjct: 60  FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 119
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
           I++DR   GP+++G  +GG  IE++A   P +I K  ID+  GI D  A ++ + L    
Sbjct: 120 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 179
Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266
             +N A +Q+KKLY LF + D T +E+NP  ET   Q+V  DAK+NFDDNA FRQK+IFA
Sbjct: 180 PLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 239
Query: 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG 326
           + D ++ +P E  AAK DL YIGLDG I C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 240 MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 299
Query: 327 NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
              E QV +AFK+LT+D KV+AILVNIFGGI+   +IA+GI  A +++
Sbjct: 300 GVKESQVYQAFKLLTADPKVEAILVNIFGGIVNXAIIANGITKACREL 347

>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From Escherichia Coli At 2.5 Angstroms Resolution Length = 388

Iteration: 1
 Score =  280 bits (715), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 156/353 (44%), Positives = 216/353 (61%), Gaps = 22/353 (6%)
Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD--AFPDHKELVVKSQILAGGRGL 85
           +N+HEYQ  +L A+YG+  P G A  +  E ++A     A P     VVK Q+ AGGRG 
Sbjct: 1   MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGP----WVVKCQVHAGGRGK 56
Query: 86  GTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144
                   GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y
Sbjct: 57  A-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELY 109
Query: 145 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAP 204
              ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA 
Sbjct: 110 LGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAF 165
Query: 205 KVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 260
           K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FR
Sbjct: 166 KLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFR 225
Query: 261 QKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPAN 320
           Q ++  +RD +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PAN
Sbjct: 226 QPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPAN 285
Query: 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQ 373
           FLDVGG A++ +V EAFKI+ SD+KVKA+LVNIFGGI++CD+IA GI+ A  +
Sbjct: 286 FLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAE 338

>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With Dephosphorylated E. Coli Succinyl-Coa Synthetase Length = 385

Iteration: 1
 Score =  279 bits (714), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 156/353 (44%), Positives = 216/353 (61%), Gaps = 22/353 (6%)
Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD--AFPDHKELVVKSQILAGGRGL 85
           +N+HEYQ  +L A+YG+  P G A  +  E ++A     A P     VVK Q+ AGGRG 
Sbjct: 1   MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGP----WVVKCQVHAGGRGK 56
Query: 86  GTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144
                   GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y
Sbjct: 57  A-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELY 109
Query: 145 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAP 204
              ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA 
Sbjct: 110 LGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAF 165
Query: 205 KVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 260
           K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FR
Sbjct: 166 KLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFR 225
Query: 261 QKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPAN 320
           Q ++  +RD +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PAN
Sbjct: 226 QPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPAN 285
Query: 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQ 373
           FLDVGG A++ +V EAFKI+ SD+KVKA+LVNIFGGI++CD+IA GI+ A  +
Sbjct: 286 FLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAE 338

>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E. Coli Scs Length = 388

Iteration: 1
 Score =  277 bits (709), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 155/353 (43%), Positives = 215/353 (60%), Gaps = 22/353 (6%)
Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD--AFPDHKELVVKSQILAGGRGL 85
           +N+HEYQ  +L A+YG+  P G A  +  E ++A     A P     VVK Q+ AGGRG 
Sbjct: 1   MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGP----WVVKCQVHAGGRGK 56
Query: 86  GTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144
                   GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y
Sbjct: 57  A-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELY 109
Query: 145 FAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAP 204
              ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA 
Sbjct: 110 LGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAF 165
Query: 205 KVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 260
           K+      ++Q  K++     +F E D  L+ INPL  T    L+  D KL  D NA FR
Sbjct: 166 KLGLEGKLVQQFTKIFMGLATIFLERDLALIAINPLVITKQGDLICLDGKLGADGNALFR 225
Query: 261 QKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPAN 320
           Q ++  +RD +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PAN
Sbjct: 226 QPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPAN 285
Query: 321 FLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQ 373
           FLDVGG A++ +V EAFKI+ SD+KVKA+LVNIFGGI++CD+IA GI+ A  +
Sbjct: 286 FLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAE 338

>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With Gdp-mn2+ Length = 397

Iteration: 1
 Score =  203 bits (517), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 128/349 (36%), Positives = 190/349 (54%), Gaps = 23/349 (6%)
Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
           +N+HEYQ  E++A+YG+ VP G  VA   E  K I + F   K +V+K+Q+  GGRG   
Sbjct: 1   MNLHEYQAKEILARYGVPVPPG-KVAYTPEEAKRIAEEF--GKRVVIKAQVHVGGRGKA- 56
Query: 88  FKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
                 GGV +    +E  + A  +LG  +       +G  V KV + E + +  E Y  
Sbjct: 57  ------GGVKLADTPQEAYEKAQAILGMNI-------KGLTVKKVLVAEAVDIAKEYYAG 103
Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAP 204
           ++LDR     +++   +GG  IE++A + P  I K  ID   G    +A ++V   GL  
Sbjct: 104 LILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGFRPFEAREMVKRAGLE- 162
Query: 205 KVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEI 264
              + N   + +  LY+ +   D ++ EINPL  T+   +VAADAK+  DDNA FR  ++
Sbjct: 163 --GNLNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPDL 220
Query: 265 FALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDV 324
             LR+   E P EV A+     Y+ LDG IG + NGAGL M T+D++   GG PANFLD+
Sbjct: 221 AELREVEAEHPLEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGKPANFLDI 280
Query: 325 GGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQ 373
           GG A    V  A K++  D  VK + +NIFGGI + D +A G++ A ++
Sbjct: 281 GGGAKADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAKGVIRALEE 329

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	394
2fp4_B	395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	0.0
2nu8_B	388	SCS-beta, succinyl-COA synthetase beta chain; citr	0.0
3ufx_B	397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	1e-167
3mwd_A	425	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	1e-135
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	7e-40
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1wr2_A	238	Hypothetical protein PH1789; structural genomics,	5e-04
4dim_A	403	Phosphoribosylglycinamide synthetase; structural g	6e-04

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* Length = 395

 Score =  572 bits (1478), Expect = 0.0
 Identities = 175/349 (50%), Positives = 234/349 (67%), Gaps = 3/349 (0%)

Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
           +N+ EYQ  +LM+  G+ V +     + +E  +A +    + KE+V+K+QILAGGRG G 
Sbjct: 1   MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRL--NAKEIVLKAQILAGGRGKGV 58

Query: 88  FKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
           F SGLKGGVH+ K  E V  LA +M+G  L TKQT  +G  V+KV + E L +  E Y A
Sbjct: 59  FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 118

Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
           I++DR   GP+++G  +GG  IE++A   P +I K  ID+  GI D  A ++ + L    
Sbjct: 119 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 178

Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266
             +N A +Q+KKLY LF + D T +E+NP  ET   Q+V  DAK+NFDDNA FRQK+IFA
Sbjct: 179 PLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 238

Query: 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG 326
           + D ++ +P E  AAK DL YIGLDG I C VNGAGLAMAT DII L+GG PANFLD+GG
Sbjct: 239 MDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGG 298

Query: 327 NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVS 375
              E QV +AFK+LT+D KV+AILVNIFGGI+ C +IA+GI  A +++ 
Sbjct: 299 GVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELE 347

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* Length = 388

 Score =  547 bits (1411), Expect = 0.0
 Identities = 152/349 (43%), Positives = 210/349 (60%), Gaps = 10/349 (2%)

Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
           +N+HEYQ  +L A+YG+  P G A  +  E ++A           VVK Q+ AGGRG   
Sbjct: 1   MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKI--GAGPWVVKCQVHAGGRGKA- 57

Query: 88  FKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
                 GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y  
Sbjct: 58  ------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLG 111

Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
            ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       ++   L  + 
Sbjct: 112 AVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEG 171

Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266
                  +    L  +F E D  L+EINPL  T    L+  D KL  D NA FRQ ++  
Sbjct: 172 KLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLRE 231

Query: 267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGG 326
           +RD +QEDPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG
Sbjct: 232 MRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGG 291

Query: 327 NASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVS 375
            A++ +V EAFKI+ SD+KVKA+LVNIFGGI++CD+IA GI+ A  +V 
Sbjct: 292 GATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVG 340

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Length = 397

 Score =  471 bits (1215), Expect = e-167
 Identities = 122/348 (35%), Positives = 188/348 (54%), Gaps = 19/348 (5%)

Query: 29  NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTF 88
           N+HEYQ  E++A+YG+ VP G    + +E K+  ++     K +V+K+Q+  GGRG    
Sbjct: 2   NLHEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEF---GKRVVIKAQVHVGGRGKA-- 56

Query: 89  KSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI 147
                GGV +    +E  + A  +LG  +       +G  V KV + E + +  E Y  +
Sbjct: 57  -----GGVKLADTPQEAYEKAQAILGMNI-------KGLTVKKVLVAEAVDIAKEYYAGL 104

Query: 148 MLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVA 207
           +LDR     +++   +GG  IE++A + P  I K  ID   G    +A ++V     +  
Sbjct: 105 ILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGFRPFEAREMVKRAGLE-G 163

Query: 208 DRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFAL 267
           + N   + +  LY+ +   D ++ EINPL  T+   +VAADAK+  DDNA FR  ++  L
Sbjct: 164 NLNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPDLAEL 223

Query: 268 RDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN 327
           R+   E P EV A+     Y+ LDG IG + NGAGL M T+D++   GG PANFLD+GG 
Sbjct: 224 REVEAEHPLEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGKPANFLDIGGG 283

Query: 328 ASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVS 375
           A    V  A K++  D  VK + +NIFGGI + D +A G++ A ++  
Sbjct: 284 AKADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAKGVIRALEEGL 331

>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A* Length = 425

 Score =  392 bits (1009), Expect = e-135
 Identities = 79/379 (20%), Positives = 125/379 (32%), Gaps = 50/379 (13%)

Query: 30  IHEYQGAELMAKYGINVPKG------LAVASVDEVKKAIQDA-FPDHKELVVKSQILAGG 82
           I E  G EL+ K+               V    +  + +QD  +   + LVVK   L   
Sbjct: 6   ISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKR 65

Query: 83  RGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL--SL 139
           RG         G V +    + V+      LGQ       G     +    +   +  S 
Sbjct: 66  RGKL-------GLVGVNLTLDGVKSWLKPRLGQ---EATVGKATGFLKNFLIEPFVPHSQ 115

Query: 140 VNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV 199
             E Y  I   R   G  ++   +GG  + D+  K   ++V   +D      D     +V
Sbjct: 116 AEEFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLV--GVDEKLNPEDIKKHLLV 171

Query: 200 DGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAF 259
                    +      +  L+  + +   T LEINPL  T    +   D     D  A +
Sbjct: 172 HAPE---DKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATADY 227

Query: 260 RQKEIFAL-------------RDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMA 306
             K  +                +    D    + A   L  +   G I  MV G G ++ 
Sbjct: 228 ICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVV 287

Query: 307 TMDIIKLHGGT--PANFLDVGGNASEGQVVEAFKI----LTSDEKVKAILVNIFGGIMKC 360
             D I   GG    AN+ +  G  SE Q  +  K     +T ++     ++ I G I   
Sbjct: 288 YSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANF 347

Query: 361 DVIAS---GIVNAAKQVSA 376
             +A+   GIV A +    
Sbjct: 348 TNVAATFKGIVRAIRDYQG 366

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829

 Score =  150 bits (379), Expect = 7e-40
 Identities = 90/377 (23%), Positives = 139/377 (36%), Gaps = 52/377 (13%)

Query: 30  IHEYQGAELMAKY-----GINVPKGLAVASVDEVKKAIQDAFP--DHKELVVKSQILAGG 82
           I E  G EL+ K+      I      A  + D     +    P    + LVVK   L   
Sbjct: 6   ISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKR 65

Query: 83  RGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLG-QILVTKQTGPQGKIVSKVYLCEKLSLV 140
           RG    K GL   V +    + V+      LG +  V K TG     + + ++    +  
Sbjct: 66  RG----KLGL---VGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQA-- 116

Query: 141 NEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD 200
            E Y  I   R+  G  ++   +GG  + D+  K      K+ + V   +  ED  K + 
Sbjct: 117 EEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAK----AQKLLVGVDEKLNPEDIKKHLL 170

Query: 201 GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 260
             AP+   +      +  L+  + +   T LEINPL  T     V  D     D  A + 
Sbjct: 171 VHAPE-DKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVL-DLAAKVDATADYI 228

Query: 261 QKEIFAL--------RDPTQE-------DPREVAAAKADLNYIGLDGEIGCMVNGAGLAM 305
            K  +          R+   E       D +  A+ K  L  +   G I  MV G G ++
Sbjct: 229 CKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLK--LTLLNPKGRIWTMVAGGGASV 286

Query: 306 ATMDIIKLHGGTP--ANFLDVGGNASEGQVVE----AFKILTSDEKVKAILVNIFGGIMK 359
              D I   GG    AN+ +  G  SE Q  +       ++T ++     ++ I G I  
Sbjct: 287 VYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIAN 346

Query: 360 C-DVIA--SGIVNAAKQ 373
             +V A   GIV A + 
Sbjct: 347 FTNVAATFKGIVRAIRD 363

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 50/285 (17%), Positives = 87/285 (30%), Gaps = 76/285 (26%)

Query: 98  IVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVY-----LCEKLSLVNEMYFAIMLDRK 152
           I+ KEE++         I+++K        VS        L  K   + + +   +L   
Sbjct: 45  ILSKEEIDH--------IIMSKDA------VSGTLRLFWTLLSKQEEMVQKFVEEVLR-- 88

Query: 153 TAGPIIIGCSKGGTSIEDLAEKY------PNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
                         + + L          P+M+ ++ I+  + + ++         A   
Sbjct: 89  -------------INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-----NQVFAKYN 130

Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAET-------SGKQLVAADAKLNFDDNAAF 259
             R     ++++           LLE+ P           SGK  VA D  L++      
Sbjct: 131 VSRLQPYLKLRQ----------ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 260 RQKEIFALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIK------L 313
              +IF L       P  V      L Y  +D       + +      +  I+      L
Sbjct: 181 -DFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 314 HGGTPANFLDVGGNASEGQVVEAF----KIL--TSDEKVKAILVN 352
                 N L V  N    +   AF    KIL  T  ++V   L  
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 52/349 (14%), Positives = 105/349 (30%), Gaps = 130/349 (37%)

Query: 7   NKLVSRSLTVAGQWQ-QQQLRRLNIHEYQGAELMAKYGINVPKG-----------LAVAS 54
            K V+  L+ A           + +   +   L+ KY ++                 ++ 
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSI 332

Query: 55  V-------------------DEVKKAIQDAF-----PDHKELVVKSQILAGGRGLGTFKS 90
           +                   D++   I+ +       +++++  +         L  F  
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR---------LSVFPP 383

Query: 91  GLKGGVHI-----------VKKEEVEDLAGKMLGQILVTKQTGPQGKIVS--KVYLCEKL 137
                 HI           V K +V  +  K+    LV KQ  P+   +S   +YL  K+
Sbjct: 384 S----AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ--PKESTISIPSIYLELKV 437

Query: 138 SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKY-PNMIVKVPID--VFNGI---- 190
            L NE      L R      I+           + + +  + ++   +D   ++ I    
Sbjct: 438 KLENEYA----LHRS-----IVDHYN-------IPKTFDSDDLIPPYLDQYFYSHIGHHL 481

Query: 191 -----TDEDA-------------AKVV-DGLA-PKVADRNDAIEQVKKLYKLF-CESD-- 227
                 +                 K+  D  A        + ++Q+K  YK + C++D  
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-YKPYICDNDPK 540

Query: 228 -----CTLLEINPLAETSGKQLVAADAK------LNFDDNA----AFRQ 261
                  +L+  P  E     L+ +         L  +D A    A +Q
Sbjct: 541 YERLVNAILDFLPKIEE---NLICSKYTDLLRIALMAEDEAIFEEAHKQ 586

>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} Length = 238

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 48/245 (19%), Positives = 101/245 (41%), Gaps = 47/245 (19%)

Query: 26  RRLNIHEYQGAELMAKYGINVPKGLAVASVDE-VKKAIQDAFPDHKELVVKSQILAGGRG 84
            R  + EY+  +++  YG+ VP+     ++DE ++ A +  +P    +V+K         
Sbjct: 16  GRTAMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIGYP----VVLK----LMSPQ 67

Query: 85  LGTFKSGLKGGVH--IVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNE 142
           +   KS     V   I  +EE++    ++       K+  P  +I+  V +   L    E
Sbjct: 68  I-LHKSDA-KVVMLNIKNEEELKKKWEEIHENA---KKYRPDAEILG-VLVAPMLKPGRE 121

Query: 143 MYFAIMLDRKTAGPIIIGCSKGGTSIE---DLAEKYPNMIVKVPIDVFNGITDEDAAKVV 199
           +   +  D    G  I+    GG  +E   D+         ++       IT++DA K++
Sbjct: 122 VIIGVTED-PQFGHAIM-FGLGGIFVEILKDVT-------FRLV-----PITEKDARKMI 167

Query: 200 DGL--AP--------KVADRNDAIEQVKKLYKLFCESDCTL--LEINPL-AETSGKQLVA 246
             +   P        + AD +  ++ + K+ KL  +    +  +++NP+     G+  V 
Sbjct: 168 QEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVI 227

Query: 247 ADAKL 251
            D+++
Sbjct: 228 VDSRI 232

>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Length = 403

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 37  ELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRG 84
           E   KY +N  +   V + +E+K A+++   P    ++VK+  L G +G
Sbjct: 115 EAFKKYNVNTARHFVVRNENELKNALENLKLP----VIVKATDLQGSKG 159

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	394
2fp4_B	395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	100.0
2nu8_B	388	SCS-beta, succinyl-COA synthetase beta chain; citr	100.0
3ufx_B	397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	100.0
3mwd_A	425	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	100.0
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	100.0
1wr2_A	238	Hypothetical protein PH1789; structural genomics,	100.0
2csu_A	457	457AA long hypothetical protein; structural genomi	99.68
3lp8_A	442	Phosphoribosylamine-glycine ligase; ssgcid, NIH, n	99.27
3aw8_A	369	PURK, phosphoribosylaminoimidazole carboxylase, AT	99.24
4eg0_A	317	D-alanine--D-alanine ligase; structural genomics,	99.22
3e5n_A	386	D-alanine-D-alanine ligase A; bacterial blight; 2.	99.22
3jrx_A	587	Acetyl-COA carboxylase 2; BC domain, soraphen A, a	99.21
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	99.2
3glk_A	540	Acetyl-COA carboxylase 2; ATP binding, alternative	99.19
2cqy_A	108	Propionyl-COA carboxylase alpha chain, mitochondri	99.17
1vkz_A	412	Phosphoribosylamine--glycine ligase; TM1250, struc	99.17
3ouz_A	446	Biotin carboxylase; structural genomics, center fo	99.17
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	99.15
1a9x_A	1073	Carbamoyl phosphate synthetase (large chain); amid	99.15
3i12_A	364	D-alanine-D-alanine ligase A; D-alanyl-alanine syn	99.14
3tqt_A	372	D-alanine--D-alanine ligase; cell envelope; 1.88A	99.1
3mjf_A	431	Phosphoribosylamine--glycine ligase; structural ge	99.09
1w96_A	554	ACC, acetyl-coenzyme A carboxylase; ligase, obesit	99.08
4fu0_A	357	D-alanine--D-alanine ligase 7; vancomycin resistan	99.07
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	99.07
2dzd_A	461	Pyruvate carboxylase; biotin carboxylase, ligase;	99.05
3k3p_A	383	D-alanine--D-alanine ligase; D-alanyl-alanine synt	99.04
2dwc_A	433	PH0318, 433AA long hypothetical phosphoribosylglyc	99.01
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	98.97
3eth_A	355	Phosphoribosylaminoimidazole carboxylase ATPase su	98.96
2xcl_A	422	Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-	98.94
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	98.92
2yw2_A	424	Phosphoribosylamine--glycine ligase; glycinamide r	98.92
2yrx_A	451	Phosphoribosylglycinamide synthetase; glycinamide	98.92
1a9x_A	1073	Carbamoyl phosphate synthetase (large chain); amid	98.91
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.91
3ln6_A	750	Glutathione biosynthesis bifunctional protein GSH;	98.89
3se7_A	346	VANA; alpha-beta structure, D-alanine-D-lactate li	98.88
2qk4_A	452	Trifunctional purine biosynthetic protein adenosi;	98.87
1ulz_A	451	Pyruvate carboxylase N-terminal domain; biotin car	98.87
2ip4_A	417	PURD, phosphoribosylamine--glycine ligase; GAR syn	98.86
3vmm_A	474	Alanine-anticapsin ligase BACD; ATP-grAsp domain,	98.85
1ehi_A	377	LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g	98.84
2vpq_A	451	Acetyl-COA carboxylase; bacteria, ATP-grAsp domain	98.83
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	98.83
2z04_A	365	Phosphoribosylaminoimidazole carboxylase ATPase su	98.82
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	98.82
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	98.82
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	98.81
2w70_A	449	Biotin carboxylase; ligase, ATP-binding, fatty aci	98.81
3r5x_A	307	D-alanine--D-alanine ligase; alpha-beta structure,	98.78
4dim_A	403	Phosphoribosylglycinamide synthetase; structural g	98.77
2i87_A	364	D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco	98.75
3vot_A	425	L-amino acid ligase, BL00235; ATP-grAsp motif, ATP	98.71
3lwb_A	373	D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan	98.68
1iow_A	306	DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho	98.66
3ln7_A	757	Glutathione biosynthesis bifunctional protein GSH;	98.62
1uc8_A	280	LYSX, lysine biosynthesis enzyme; alpha-aminoadipa	98.61
1e4e_A	343	Vancomycin/teicoplanin A-type resistance protein;	98.58
2fb9_A	322	D-alanine:D-alanine ligase; 1.90A {Thermus caldoph	98.51
2pvp_A	367	D-alanine-D-alanine ligase; 2.40A {Helicobacter py	98.49
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	98.48
2pn1_A	331	Carbamoylphosphate synthase large subunit; ZP_0053	98.48
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	98.45
2r7k_A	361	5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib	98.2
2r85_A	334	PURP protein PF1517; ATP-grAsp superfamily, unknow	98.05
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	97.98
1z2n_X	324	Inositol 1,3,4-trisphosphate 5/6-kinase; inositol	97.91
1i7n_A	309	Synapsin II; synapse, phosphorylation, neuropeptid	97.36
2p0a_A	344	Synapsin-3, synapsin III; neurotransmitter release	97.13
1gsa_A	316	Glutathione synthetase; ligase; HET: ADP GSH; 2.00	97.09
2q7d_A	346	Inositol-tetrakisphosphate 1-kinase; inositol kina	97.01
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	96.92
3df7_A	305	Putative ATP-grAsp superfamily protein; putative p	96.87
2pbz_A	320	Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt	96.81
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	92.89
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	92.65
3dbi_A	338	Sugar-binding transcriptional regulator, LACI FAM;	90.45
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	90.2
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	90.13
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	89.59
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	89.02
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	88.94
3qk7_A	294	Transcriptional regulators; structural genomics, N	87.8
3d8u_A	275	PURR transcriptional regulator; APC91343.1, vibrio	87.38
1qpz_A	340	PURA, protein (purine nucleotide synthesis repress	87.33
3brq_A	296	HTH-type transcriptional regulator ASCG; transcrip	86.98
2fep_A	289	Catabolite control protein A; CCPA, transcriptiona	86.82
3bbl_A	287	Regulatory protein of LACI family; protein structu	86.73
1dbq_A	289	Purine repressor; transcription regulation, DNA-bi	86.59
3k4h_A	292	Putative transcriptional regulator; structural gen	85.35
2rgy_A	290	Transcriptional regulator, LACI family; 11011J, NY	85.17
2csu_A	457	457AA long hypothetical protein; structural genomi	84.06
2hsg_A	332	Glucose-resistance amylase regulator; CCPA, transc	83.79
3kke_A	303	LACI family transcriptional regulator; structural	82.93
3kjx_A	344	Transcriptional regulator, LACI family; LACL famil	82.75
3clk_A	290	Transcription regulator; 11017J, PSI-II, NYSGXRC,	82.58
3gv0_A	288	Transcriptional regulator, LACI family; transcript	81.58
3h75_A	350	Periplasmic sugar-binding domain protein; protein	81.27
3k9c_A	289	Transcriptional regulator, LACI family protein; PS	80.92
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	80.87
1jye_A	349	Lactose operon repressor; gene regulation, protein	80.29
2iks_A	293	DNA-binding transcriptional dual regulator; escher	80.28
3g85_A	289	Transcriptional regulator (LACI family); transcrip	80.07

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*

Probab=100.00  E-value=1e-89  Score=693.86  Aligned_cols=356  Identities=49%  Similarity=0.792  Sum_probs=342.9

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCC-cEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK-ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~-PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      |+|+||++|++|++||||+|++.+++|++|+.++++++|   + |+|||||+++|||||++|+++.+|||+++ |++|++
T Consensus         1 m~l~E~~aK~lL~~~GIpvp~~~~~~s~~ea~~~a~~lg---~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~   77 (395)
T 2fp4_B            1 MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLN---AKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVG   77 (395)
T ss_dssp             CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHT---CSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHH
T ss_pred             CCCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHHcC---CCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHH
Confidence            889999999999999999999999999999999999998   8 89999999999999999988666999999 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecC
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID  185 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~  185 (394)
                      +++++++++.++++|+++.|.++++|+||||+++++|+|+++.+||.+++|++++|.+||++||+++.++||+++++|++
T Consensus        78 ~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~id  157 (395)
T 2fp4_B           78 QLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQID  157 (395)
T ss_dssp             HHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECC
T ss_pred             HHHHHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecC
Confidence            99999999988888988889888999999999999999999999999988999999999999999998999999999999


Q ss_pred             CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcchhccchhhh
Q 016159          186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIF  265 (394)
Q Consensus       186 p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a~fR~~~~~  265 (394)
                      |..++++++|++|++.+|+++.+.+++++++.+||++|.++|++++|||||+++++|+++|+|||+.+||||.|||++++
T Consensus       158 p~~~l~~~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~~~d~~~lEINPl~~~~~g~~~alDaki~~ddnA~~r~~~~~  237 (395)
T 2fp4_B          158 IIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIF  237 (395)
T ss_dssp             TTTCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGGGGCHHHH
T ss_pred             CCCCCCHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhhCCeEEEEeeeEEEcCCCCEEEEEeEEEecccccccCcchh
Confidence            99999999999999999999999999999999999999999999999999999999889999999999999999999999


Q ss_pred             ccCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCC
Q 016159          266 ALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEK  345 (394)
Q Consensus       266 ~~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~  345 (394)
                      +|++.+++++.|.+|++++|+|++++||||||+||||++|+|||+|+.+||+||||+|+||+|+.++++++++++++||+
T Consensus       238 ~~~d~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~Gg~paNflDvgG~a~~e~~~~al~~il~d~~  317 (395)
T 2fp4_B          238 AMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPK  317 (395)
T ss_dssp             TTCCCTTSCHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSSCCHHHHHHHHHHHHHCTT
T ss_pred             hhcCCCccChhhhhHHHcCCceeccCCeEEEEecCchHHHHHHHHHHHcCCCcCCcEEECCCCCHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecce
Q 016159          346 VKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNY  386 (394)
Q Consensus       346 v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~  386 (394)
                      ||+|||||||||++||+||+||++|+++++.++  +.+.-||.
T Consensus       318 v~~ilvni~ggi~~~d~vA~gii~a~~~~~~~~Pivvrl~G~n  360 (395)
T 2fp4_B          318 VEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTN  360 (395)
T ss_dssp             CCEEEEEEEESSSCHHHHHHHHHHHHHHHTCCSCEEEEEEETT
T ss_pred             CCEEEEEecCCccCcHHHHHHHHHHHHhcCCCCeEEEEcCCCC
Confidence            999999999999999999999999999976554  77777764

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*

Probab=100.00  E-value=6.3e-87  Score=672.65  Aligned_cols=349  Identities=44%  Similarity=0.707  Sum_probs=336.7

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCc-EEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKE-LVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~P-vVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      |+|+||++|++|++||||+|++.+++|++|+.++++++|   +| +||||+.+.|||||+       |||+++ |++|++
T Consensus         1 m~l~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG---~P~vVvK~~~~~ggrg~~-------gGV~l~~s~eel~   70 (388)
T 2nu8_B            1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIG---AGPWVVKCQVHAGGRGKA-------GGVKVVNSKEDIR   70 (388)
T ss_dssp             CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHC---SSCEEEEECCSSSCTTTT-------TCEEEECSHHHHH
T ss_pred             CCCCHHHHHHHHHHCCcCCCCeeEECCHHHHHHHHHHhC---CCeEEEEEecCCCCCCcc-------CCEEEECCHHHHH
Confidence            899999999999999999999999999999999999998   99 999999988999985       999999 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecC
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID  185 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~  185 (394)
                      +++++++++.++|+|+++.|..+++++||||+++++|+|+++.+|+.+++|++++|.+||++||.+++++||++.+++++
T Consensus        71 ~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~  150 (388)
T 2nu8_B           71 AFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALD  150 (388)
T ss_dssp             HHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECB
T ss_pred             HHHHHHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecC
Confidence            99999999887888988888888999999999989999999999999977999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcchhccchhhh
Q 016159          186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIF  265 (394)
Q Consensus       186 p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a~fR~~~~~  265 (394)
                      |..+++++++++|++.+|+++.+++++++++.+||++|.++|++++|||||+++++|+++|+|||+.+||||.|||+++.
T Consensus       151 P~~gl~~~~a~~~~~~lG~~~~~~~~~~~~l~~l~~~~~~~d~~~lEINPl~~~~~g~~~alDaki~~dd~a~~r~~~~~  230 (388)
T 2nu8_B          151 PLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLR  230 (388)
T ss_dssp             TTTBCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCEEEEEecceEEcCCCCEEEEeeEEEeCCchhccCcchh
Confidence            99999999999999999999999999999999999999999999999999999999889999999999999999999999


Q ss_pred             ccCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCC
Q 016159          266 ALRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEK  345 (394)
Q Consensus       266 ~~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~  345 (394)
                      ++++++++++.|.+|++++|+|++++||||||+||||++|+|||+|+.+||+||||+|+||+|+.++++++++++++||+
T Consensus       231 ~~~~~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGl~m~t~D~i~~~Gg~~aNflD~gG~a~~~~~~~~~~~il~d~~  310 (388)
T 2nu8_B          231 EMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDK  310 (388)
T ss_dssp             HHCCGGGSCHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSCCCHHHHHHHHHHHHTSTT
T ss_pred             hhcCccccChhHHHHHHhcCCccCCCCEEEEEeCCCchhhhhhHHHHHcCCCcCceeEecCCCCHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecce
Q 016159          346 VKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNY  386 (394)
Q Consensus       346 v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~  386 (394)
                      ||+|||||||||++||.||+||++|+++++.++  +.++.||.
T Consensus       311 v~~ilvni~ggi~~~~~vA~gii~a~~~~~~~~pivvrl~G~n  353 (388)
T 2nu8_B          311 VKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNN  353 (388)
T ss_dssp             CCEEEEEEESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTT
T ss_pred             CCEEEEEecCCcCCchHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            999999999999999999999999999965554  77999974

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}

Probab=100.00  E-value=1e-83  Score=650.71  Aligned_cols=340  Identities=36%  Similarity=0.606  Sum_probs=325.7

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      |+|+||++|++|++||||||++.+++|++|+.++++++|   +|||||+|++.+||||+       |||+++ |++|+++
T Consensus         1 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG---~PvVvKa~~~~ggkg~~-------GGV~l~~s~ee~~~   70 (397)
T 3ufx_B            1 MNLHEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEFG---KRVVIKAQVHVGGRGKA-------GGVKLADTPQEAYE   70 (397)
T ss_dssp             CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHT---SCEEEEECCSSSCTTTT-------TCEEEESSHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHcC---CCEEEEEccccCCCCcc-------ceEEEeCCHHHHHH
Confidence            899999999999999999999999999999999999998   99999999988999885       999999 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCC
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV  186 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p  186 (394)
                      ++++++++.+       .|..+++++||||+++++|+|+++.+||.|++|+|++|.+||++||++++++||++++++++|
T Consensus        71 a~~~~~~~~~-------~g~~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~~s~~GGv~iE~~a~~~pd~i~~~~i~~  143 (397)
T 3ufx_B           71 KAQAILGMNI-------KGLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDP  143 (397)
T ss_dssp             HHHHHTTCEE-------TTEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCCSSCHHHHHHHCGGGCEEEECBT
T ss_pred             HHHHhhhhhc-------cCCccceEEEEEeecCCeeEEEEEEecCCCCCcEEEEeCCCCccHhhhcccCccceEEEecCC
Confidence            9999998753       466778999999999999999999999999889999998999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcchhccchhhhc
Q 016159          187 FNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA  266 (394)
Q Consensus       187 ~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a~fR~~~~~~  266 (394)
                      ..++++++|++|++++|+++. ++++++++.+||++|.++|++++|||||+++++|+++|+|||+.+||||.|||+++..
T Consensus       144 ~~~l~~~~a~~~~~~lG~~g~-~~~l~~~l~~l~~l~~~~~~~~lEINPL~~~~~g~~~alDaki~~ddnA~~r~~~~~~  222 (397)
T 3ufx_B          144 HKGFRPFEAREMVKRAGLEGN-LNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPDLAE  222 (397)
T ss_dssp             TTBCCHHHHHHHHHHHTCCSC-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESSCEEEECGGGGGGCHHHHT
T ss_pred             CCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHcCCccEEEeeceEECCCCCEEEEEeEEEecCcchhcchhhhh
Confidence            999999999999999999988 9999999999999999999999999999999998899999999999999999999999


Q ss_pred             cCCCCCCCHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCc
Q 016159          267 LRDPTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKV  346 (394)
Q Consensus       267 ~~~~~~~~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v  346 (394)
                      +++++++++.|.+|++++|+|++++||||||+||||++|+|||+|..+||+||||+|+||+|+++++++|++++++||+|
T Consensus       223 ~~~~~~~~~~e~~a~~~~l~yv~l~g~I~ii~Ng~Gl~~~t~D~i~~~G~~~aN~lD~gG~a~~e~~~~al~~~l~d~~v  302 (397)
T 3ufx_B          223 LREVEAEHPLEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGKPANFLDIGGGAKADVVYNALKVVLKDPDV  302 (397)
T ss_dssp             THHHHCSSHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBSEEEECCSCCCHHHHHHHHHHHHTCTTC
T ss_pred             hcCcccCCHhHHHHHHcCCCcccCCCcEEEEecCccHHHHHHHHHHHcCCCcCCcEecCCCCCHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--eEEeecc
Q 016159          347 KAILVNIFGGIMKCDVIASGIVNAAKQVSALD--CFGFHSN  385 (394)
Q Consensus       347 ~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~  385 (394)
                      |+|||||||||++||+||++|++|+++.+.++  +.++-||
T Consensus       303 ~~ilv~i~ggi~~~~~vA~~i~~a~~~~~~~kPvvv~~~G~  343 (397)
T 3ufx_B          303 KGVFINIFGGITRADEVAKGVIRALEEGLLTKPVVMRVAGT  343 (397)
T ss_dssp             CEEEEEEEEEEEESHHHHHHHHHHHTTTCCCSCEEEEEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHhhCCCCcEEEEccCC
Confidence            99999999999999999999999999985444  7677775

>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*

Probab=100.00  E-value=5.1e-80  Score=626.22  Aligned_cols=338  Identities=23%  Similarity=0.268  Sum_probs=296.0

Q ss_pred             cCCCHHHHHHHHHHcCC---C---CCCceeeCCH---HHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE
Q 016159           28 LNIHEYQGAELMAKYGI---N---VPKGLAVASV---DEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI   98 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GI---p---vp~~~~~~s~---eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l   98 (394)
                      ..|+|||+|+||++||+   |   .+++.+++++   +||.++++++|  ++|||||+|+++|||||+       |||++
T Consensus         4 k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~a~~lg--~~pvVvKaqv~~ggRgk~-------GGV~l   74 (425)
T 3mwd_A            4 KAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLL--SQNLVVKPDQLIKRRGKL-------GLVGV   74 (425)
T ss_dssp             EEECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCGGGG--TSCEEEEECSSCSCTTTT-------TCCEE
T ss_pred             hhHhHHHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHHHHHHhC--CCCEEEEeccccCCCCcC-------CeEEE
Confidence            45899999999999999   4   2347777655   89999999995  379999999999999995       99999


Q ss_pred             C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCC--CeeEEEEEEEeccCCceeeeeccCCCcceeeccccC
Q 016159           99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL--VNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKY  175 (394)
Q Consensus        99 ~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~--~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~  175 (394)
                      + |++|+++++++|+++.+   +++.++..+++|+||+|+++  ++|+|+|+++||.  +|+|++|.+||++||++++++
T Consensus        75 ~~s~eev~~aa~~ml~~~~---~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~--gpvI~~s~~GGv~IE~vad~~  149 (425)
T 3mwd_A           75 NLTLDGVKSWLKPRLGQEA---TVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAKA  149 (425)
T ss_dssp             EECHHHHHHHHTTTTTCEE---EETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT--EEEEEEESSCSTTCCSHHHHS
T ss_pred             ECCHHHHHHHHHHHHhhhh---hccCCCceEEEEEEEecccCCCCceEEEEEEecCC--CCEEEEECCCCccHhHhhccc
Confidence            9 99999999999998875   23234556789999999975  5999999999999  599999999999999998765


Q ss_pred             CCeEEEEecCCCCCCCHHHHH-HHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecC
Q 016159          176 PNMIVKVPIDVFNGITDEDAA-KVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFD  254 (394)
Q Consensus       176 pd~i~~~~v~p~~gl~~~~a~-~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ld  254 (394)
                          .+++++|..+++.++++ +++.  |+++.+++++++++.+||++|.++|++++|||||+++++| ++|+|||+.+|
T Consensus       150 ----~~~~i~~~~~l~~~~~~~~ll~--g~~~~d~~~la~~l~~L~~lf~d~d~~~lEINPLvvt~~g-v~AlDAki~lD  222 (425)
T 3mwd_A          150 ----QKLLVGVDEKLNPEDIKKHLLV--HAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVD  222 (425)
T ss_dssp             ----EEEEEETTCCCCHHHHHHTTTT--TSCTTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCEEEEEE
T ss_pred             ----ceEecCCccccCHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHhCCccEEEeeeeEEcCCc-eEEEeceeecc
Confidence                46778887788888774 3433  5788899999999999999999999999999999999987 99999999999


Q ss_pred             cchhccchhhhc-cCCC----CCCCHHhHhhh--------cCCCeEEccCCceeEEecChhHHHHHHHHHHHcCC--Ccc
Q 016159          255 DNAAFRQKEIFA-LRDP----TQEDPREVAAA--------KADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGG--TPA  319 (394)
Q Consensus       255 d~a~fR~~~~~~-~~~~----~~~~~~e~~a~--------~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg--~~a  319 (394)
                      |||.|||++.+. ++++    .++++.|.++.        +++|+|++|+||||||+|||||+|+|||+|+++||  +||
T Consensus       223 DnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~a~~~~~~~l~yv~ldG~Ig~mvNGaGlamat~D~i~~~Gg~~~pA  302 (425)
T 3mwd_A          223 ATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELA  302 (425)
T ss_dssp             GGGHHHHHHHHCSCCCCCCSSSCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHTTCGGGBC
T ss_pred             cchhhhChhhhhhhhccccccccCChhhhhhhhhhhhhhhccCccEEecCCeEEEEecCchHHHHHHHHHHHcCCCcCCc
Confidence            999999987654 3444    45688876553        57899999999999999999999999999999999  799


Q ss_pred             ceeecCCCCCHHHHHHH----HHHHhcCCCccEEEEEccCCCCChHHHH---HHHHHHHHHc-----CCcc--eEEeecc
Q 016159          320 NFLDVGGNASEGQVVEA----FKILTSDEKVKAILVNIFGGIMKCDVIA---SGIVNAAKQV-----SALD--CFGFHSN  385 (394)
Q Consensus       320 NflD~gG~a~~~~~~~a----~~~~l~~~~v~~i~vni~ggi~~~d~vA---~gii~a~~~~-----~~~~--~~~~~~~  385 (394)
                      ||||+||+|+.++++++    |+++++||+||+|||||||||++||+||   +|||+|++++     +.++  +.+..||
T Consensus       303 NflD~gG~a~~e~v~~~~~~~l~ii~~d~~vk~i~vnIfGGI~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivVRl~Gt  382 (425)
T 3mwd_A          303 NYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGP  382 (425)
T ss_dssp             EEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBST
T ss_pred             ceEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCcccHHHHHHHHhHHHHHHHHhhhccccCCCcEEEECCcC
Confidence            99999999999999985    9999999999999999999999999999   9999999986     3444  8888887


Q ss_pred             e
Q 016159          386 Y  386 (394)
Q Consensus       386 ~  386 (394)
                      -
T Consensus       383 n  383 (425)
T 3mwd_A          383 N  383 (425)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.5e-77  Score=641.11  Aligned_cols=337  Identities=23%  Similarity=0.265  Sum_probs=298.5

Q ss_pred             cCCCHHHHHHHHHHcCCC------CCCceeeCCH---HHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE
Q 016159           28 LNIHEYQGAELMAKYGIN------VPKGLAVASV---DEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI   98 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIp------vp~~~~~~s~---eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l   98 (394)
                      ..|+|||+|+||++|++|      .+++.+++++   +||.++++++|  .+|||||+|+++|||||+       |||++
T Consensus         4 k~i~Ey~aK~ll~~~~~~~~~~~~~~~~~~v~~~~~~~eA~~aa~~lg--~~pvVvKaQv~~GgRGKa-------GGVkL   74 (829)
T 3pff_A            4 KAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLL--SQNLVVKPDQLIKRRGKL-------GLVGV   74 (829)
T ss_dssp             EEECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCTHHH--HSCEEEEECSSCSCTTTT-------TCCEE
T ss_pred             hhHhHHHHHHHHHHhCccccccccCCceEEeCCCCCHHHHHHHHHHhC--CCCEEEEecccccCCCcC-------CeEEE
Confidence            458999999999999999      5678788765   88888888884  379999999999999996       99999


Q ss_pred             C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCC--CeeEEEEEEEeccCCceeeeeccCCCcceeeccccC
Q 016159           99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL--VNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKY  175 (394)
Q Consensus        99 ~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~--~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~  175 (394)
                      + |++|+++++++|+++.+.   ++.++..+++|+||+|+++  ++|+|+|+++||.  +|+|++|.+|||+||+++++.
T Consensus        75 ~~s~eEa~~aa~~iLg~~~~---~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~--gpvIm~s~eGGvdIE~vad~~  149 (829)
T 3pff_A           75 NLTLDGVKSWLKPRLGQEAT---VGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAKA  149 (829)
T ss_dssp             EECHHHHHHHHTTTTTCEEE---ETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT--EEEEEEESSCSTTCCCHHHHS
T ss_pred             ECCHHHHHHHHHHHHHHHHh---hcCCCceEEEEEEEecccCCCccEEEEEEEecCC--CCEEEEECCCCcchhhhhhhc
Confidence            9 999999999999998752   2234556899999999975  5999999999999  599999999999999998653


Q ss_pred             CCeEEEEecCCCCCCCHHHH-HHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecC
Q 016159          176 PNMIVKVPIDVFNGITDEDA-AKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFD  254 (394)
Q Consensus       176 pd~i~~~~v~p~~gl~~~~a-~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ld  254 (394)
                          ++++++|..+++.+++ ++++.  |+++.++++++++|.+||++|.++|++++|||||+++++| ++|+|||+.+|
T Consensus       150 ----~~~~I~p~~gl~~~~a~~~ll~--g~~~~d~~ala~~L~~Ly~lf~d~d~t~lEINPLvvt~dg-v~ALDAKi~lD  222 (829)
T 3pff_A          150 ----QKLLVGVDEKLNPEDIKKHLLV--HAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVD  222 (829)
T ss_dssp             ----EEEEEETTCCCCHHHHHHTTTT--TSCGGGHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCCEEEEE
T ss_pred             ----eEEecCCccccCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHhCCccEEEeeceEecCCc-eEEEeceeeec
Confidence                6788999999999998 44443  5788999999999999999999999999999999999988 99999999999


Q ss_pred             cchhccchhhhcc-CCC----CCCCHHhHhhh--------cCCCeEEccCCceeEEecChhHHHHHHHHHHHcCC--Ccc
Q 016159          255 DNAAFRQKEIFAL-RDP----TQEDPREVAAA--------KADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGG--TPA  319 (394)
Q Consensus       255 d~a~fR~~~~~~~-~~~----~~~~~~e~~a~--------~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg--~~a  319 (394)
                      |||.|||++.+.. +++    .++++.|.++.        +++|+|++|+||||||+|||||+|+|||+|+++||  +||
T Consensus       223 DnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~ak~~a~~~l~yv~ldG~Ig~mvNGaGlamaTmD~I~~~Gg~~~pA  302 (829)
T 3pff_A          223 ATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELA  302 (829)
T ss_dssp             GGGHHHHHHHHCSCCCCCCSSCCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHTTCTTTBC
T ss_pred             cchhhhCchhhhhhhccccccccCChhhhhhhhhhhhhccccCccEEecCCeEEeeccCchHHHHHHHHHHHcCCCCCCc
Confidence            9999999876543 443    46688876543        47899999999999999999999999999999999  799


Q ss_pred             ceeecCCCCCHHHHHHH----HHHHhcCCCccEEEEEccCCCCChHHHH---HHHHHHHHHc-----CCcc--eEEeecc
Q 016159          320 NFLDVGGNASEGQVVEA----FKILTSDEKVKAILVNIFGGIMKCDVIA---SGIVNAAKQV-----SALD--CFGFHSN  385 (394)
Q Consensus       320 NflD~gG~a~~~~~~~a----~~~~l~~~~v~~i~vni~ggi~~~d~vA---~gii~a~~~~-----~~~~--~~~~~~~  385 (394)
                      ||||+||+|+.++++++    |+++++||+||+|||||||||+|||+||   +|||+|++++     ++++  +.+..||
T Consensus       303 NFlDvGGga~~e~v~~~~~~~l~ii~~d~~vk~ilvNIfGGI~~cd~VA~tf~GIi~A~k~~~~~~~~~~vPiVVRl~Gt  382 (829)
T 3pff_A          303 NYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGP  382 (829)
T ss_dssp             EEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSCCHHHHHHHHHHHHHHHHHHHHHTTEEEEEECBST
T ss_pred             eeEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCccchHHHHHHHhHHHHHHHHhhhhcccCCceEEEECCCC
Confidence            99999999999999987    9999999999999999999999999999   9999999996     3444  7788887

>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}

Probab=100.00  E-value=8.3e-36  Score=280.98  Aligned_cols=209  Identities=18%  Similarity=0.233  Sum_probs=180.8

Q ss_pred             hhhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeee-cCCCCCCcccCCCcccEEE-C-C
Q 016159           24 QLRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQIL-AGGRGLGTFKSGLKGGVHI-V-K  100 (394)
Q Consensus        24 ~~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~-~ggRgK~~~~~~~~GGV~l-~-s  100 (394)
                      +.+++.++|+++|++|++||||+|++.++++++|+.++++++|   ||+||||+.. .+|||++       |||.+ . |
T Consensus        14 ~~~~~~l~k~~~k~ll~~~GIp~p~~~~~~~~~ea~~~a~~lg---~PvvvKp~~~~~~~r~~~-------gGv~~~v~~   83 (238)
T 1wr2_A           14 KQGRTAMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIG---YPVVLKLMSPQILHKSDA-------KVVMLNIKN   83 (238)
T ss_dssp             HTTCCEECHHHHHHHHHTTTCCCCCCEEESSHHHHHHHHHHHC---SSEEEEEECTTCCCHHHH-------TCEEEEECS
T ss_pred             hcCcCCCCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHHhC---CCEEEEEccCCCCcCCcc-------CCEEEeCCC
Confidence            3467899999999999999999999999999999999999998   9999999987 6777764       89999 5 9


Q ss_pred             HHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEE
Q 016159          101 KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIV  180 (394)
Q Consensus       101 ~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~  180 (394)
                      ++|+.++++++++....+    ..+..+.+++||||+++++|+++++..|+.+ +|++++| .||+++|.+.+    .  
T Consensus        84 ~~el~~a~~~~~~~~~~~----~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~-g~v~~~~-~Gg~~iE~~~d----~--  151 (238)
T 1wr2_A           84 EEELKKKWEEIHENAKKY----RPDAEILGVLVAPMLKPGREVIIGVTEDPQF-GHAIMFG-LGGIFVEILKD----V--  151 (238)
T ss_dssp             HHHHHHHHHHHHHHHHHH----CTTCCCCEEEEEECCCCCEEEEEEEEEETTT-EEEEEEE-ECSTTHHHHCC----C--
T ss_pred             HHHHHHHHHHHHHhhhhh----CCCCccceEEEEECCCCCeEEEEEEEeCCCC-CcEEEEe-cCCceeeeecc----e--
Confidence            999999999998764321    2344567999999999899999999999986 5999999 89999998754    2  


Q ss_pred             EEecCCCCCCCHHHHHHHHHhC-------CCCc---ccHHHHHHHHHHHHHHhhcCC--cceeeecceeeccCC-cEEEe
Q 016159          181 KVPIDVFNGITDEDAAKVVDGL-------APKV---ADRNDAIEQVKKLYKLFCESD--CTLLEINPLAETSGK-QLVAA  247 (394)
Q Consensus       181 ~~~v~p~~gl~~~~a~~l~~~l-------g~~~---~~~~~l~~~l~~L~~l~~e~d--~~~lEINPLvv~~~G-~~~al  247 (394)
                      .+.++|   ++++++++|.+.+       |+++   .|++++++++.+||++|.+.+  +.++|||||+++++| +++|+
T Consensus       152 ~~~~~P---l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~~~~~g~~~~al  228 (238)
T 1wr2_A          152 TFRLVP---ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVIV  228 (238)
T ss_dssp             EEEESS---CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEECBTTSCEEEC
T ss_pred             eeecCC---CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeEEeCCCCcEEEE
Confidence            244567   7999999998887       6654   799999999999999999986  899999999999986 69999


Q ss_pred             eceeecCcch
Q 016159          248 DAKLNFDDNA  257 (394)
Q Consensus       248 Daki~ldd~a  257 (394)
                      ||++.+|||.
T Consensus       229 Da~~~~~~~~  238 (238)
T 1wr2_A          229 DSRIILKPKD  238 (238)
T ss_dssp             CEEEEECCC-
T ss_pred             EEEEEeCCCC
Confidence            9999999973

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=99.68  E-value=8.8e-17  Score=164.93  Aligned_cols=202  Identities=17%  Similarity=0.193  Sum_probs=137.0

Q ss_pred             ceeeeeccCCCcceeeccc--cCCCe-EEEEecCCCCCCCHHHHHHHHHhCC--------CCc-ccHHHHHHHHHHHHHH
Q 016159          155 GPIIIGCSKGGTSIEDLAE--KYPNM-IVKVPIDVFNGITDEDAAKVVDGLA--------PKV-ADRNDAIEQVKKLYKL  222 (394)
Q Consensus       155 ~Pvi~~s~~GGv~iE~~~~--~~pd~-i~~~~v~p~~gl~~~~a~~l~~~lg--------~~~-~~~~~l~~~l~~L~~l  222 (394)
                      |++=++|..|.+-.|.+..  +.--- ..-+.+--..+++..+..+.+..=.        +.. .+-..+.+.+.++.  
T Consensus       150 G~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~d~l~~~~~D~~t~~I~l~~E~i~~~~~f~~~a~~~~--  227 (457)
T 2csu_A          150 GNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADVDFAELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKRVT--  227 (457)
T ss_dssp             CSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCSSCHHHHHHHHTTCSSCCEEEEEESCCSCHHHHHHHHHHHH--
T ss_pred             CCEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcCCCCHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHHHHHhc--
Confidence            5899999778776665421  11000 0112232223456655555543210        111 23455555555542  


Q ss_pred             hhcCCcceeeecceeeccCCcEEEeece--------eecCc---chhccchhhhccCCCCCCCHHhHhhhcCCCeEEcc-
Q 016159          223 FCESDCTLLEINPLAETSGKQLVAADAK--------LNFDD---NAAFRQKEIFALRDPTQEDPREVAAAKADLNYIGL-  290 (394)
Q Consensus       223 ~~e~d~~~lEINPLvv~~~G~~~alDak--------i~ldd---~a~fR~~~~~~~~~~~~~~~~e~~a~~~~l~y~~l-  290 (394)
                       .        -.|+++..-|+--. -.+        +.=++   ++.|||+++.++++     +.|..+....+.| ++ 
T Consensus       228 -~--------~KPVv~~k~G~~~~-g~~aa~~Htgalag~~~~~~AafRqaGv~~v~~-----~~El~~~~~~l~~-~~~  291 (457)
T 2csu_A          228 -K--------KKPIIALKAGKSES-GARAASSHTGSLAGSWKIYEAAFKQSGVLVANT-----IDEMLSMARAFSQ-PLP  291 (457)
T ss_dssp             -H--------HSCEEEEECC-------------------CHHHHHHHHHHTTCEEESS-----HHHHHHHHTTTTS-CCC
T ss_pred             -C--------CCCEEEEEcCCCcc-ccchhhcccCccCCcHHHHHHHHHhCCCeEECC-----HHHHHHHHHHhcC-CCC
Confidence             2        24888766553211 111        11122   57899999877664     4666666667778 66 


Q ss_pred             -CCceeEEecChhHHHHHHHHHHHcCCC---------------------ccceeecCCCCCHHHHHHHHHHHhcCCCccE
Q 016159          291 -DGEIGCMVNGAGLAMATMDIIKLHGGT---------------------PANFLDVGGNASEGQVVEAFKILTSDEKVKA  348 (394)
Q Consensus       291 -~G~Ig~~~nGaGl~m~t~D~i~~~gg~---------------------~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~  348 (394)
                       .++|+||+||||++|+++|++..+|++                     ++||+|++|+++++++.++++++++||++++
T Consensus       292 ~g~rvaiitngGG~~~laaD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~al~~~l~dp~vd~  371 (457)
T 2csu_A          292 RGNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDM  371 (457)
T ss_dssp             SSSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHSTTCSE
T ss_pred             CCCcEEEEECCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHHHHHHhcCCCCCE
Confidence             579999999999999999999999998                     7899999999999999999999999999999


Q ss_pred             EEEEc----cCCCCChHHHHHHHHHHHHHcC
Q 016159          349 ILVNI----FGGIMKCDVIASGIVNAAKQVS  375 (394)
Q Consensus       349 i~vni----~ggi~~~d~vA~gii~a~~~~~  375 (394)
                      ||||+    +||++ |+.+|+++++++++..
T Consensus       372 vlv~~~~~~~Gg~~-~~~~a~~i~~al~~~~  401 (457)
T 2csu_A          372 LIAICVVPTFAGMT-LTEHAEGIIRAVKEVN  401 (457)
T ss_dssp             EEEEEECCCSTTCC-SSHHHHHHHHHHHHHC
T ss_pred             EEEEccccccccCC-chhHHHHHHHHHHHhc
Confidence            99988    66676 9999999999999954

>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}

Probab=99.27  E-value=6.3e-11  Score=120.72  Aligned_cols=104  Identities=28%  Similarity=0.259  Sum_probs=87.0

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      +..-+++.+|++|+++|||+|++..+++.+|+.+++++++   +|+||||....+  ||         ||.++ |++|+.
T Consensus       119 ~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~ea~~~~~~~g---~PvVvKp~~~~g--g~---------GV~iv~~~eel~  184 (442)
T 3lp8_A          119 RLESSKGFTKELCMRYGIPTAKYGYFVDTNSAYKFIDKHK---LPLVVKADGLAQ--GK---------GTVICHTHEEAY  184 (442)
T ss_dssp             HHHHCHHHHHHHHHHHTCCBCCEEEESSHHHHHHHHHHSC---SSEEEEESSCCT--TT---------SEEEESSHHHHH
T ss_pred             HHhhCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHcC---CcEEEeECCCCC--CC---------eEEEeCCHHHHH
Confidence            3446889999999999999999999999999999999998   999999986544  34         68888 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +++++++....       .|..-..++||||++ +.|+.+.+..|..
T Consensus       185 ~a~~~~~~~~~-------~g~~~~~vlvEe~i~-G~E~sv~~~~dg~  223 (442)
T 3lp8_A          185 NAVDAMLVHHK-------FGEAGCAIIIEEFLE-GKEISFFTLVDGS  223 (442)
T ss_dssp             HHHHHHHTSCT-------TGGGGSSEEEEECCC-SEEEEEEEEEESS
T ss_pred             HHHHHHHhhcc-------cCCCCCeEEEEEeec-CcEEEEEEEECCC
Confidence            99999874321       222235799999999 8999999998865

>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}

Probab=99.24  E-value=3.5e-11  Score=118.99  Aligned_cols=104  Identities=12%  Similarity=0.124  Sum_probs=84.0

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeec-CCCCCCcccCCCcccEEEC-CHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILA-GGRGLGTFKSGLKGGVHIV-KKEEV  104 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~-ggRgK~~~~~~~~GGV~l~-s~ee~  104 (394)
                      +..-+++.+|++|+++|||+|++..+++++|+.++++++|   +|+|+||.... +  |+         ||.++ |++|+
T Consensus        92 ~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g---~P~vvKp~~~~~~--g~---------Gv~~v~~~~el  157 (369)
T 3aw8_A           92 EVAQDRLREKTFFQGLGVPTPPFHPVDGPEDLEEGLKRVG---LPALLKTRRGGYD--GK---------GQALVRTEEEA  157 (369)
T ss_dssp             HHHTCHHHHHHHHHHHTCCCCCEEEESSHHHHHHHHTTTC---SSEEEEECCC-----------------EEEECSHHHH
T ss_pred             HHhcCHHHHHHHHHHCCCCCCCceeeCCHHHHHHHHHHcC---CCEEEEEcCCCCC--cc---------eEEEECCHHHH
Confidence            3457899999999999999999999999999999999998   99999997643 3  44         69899 99999


Q ss_pred             HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159          105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC  161 (394)
Q Consensus       105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s  161 (394)
                      .++++++.               -..++||||++.+.|+.+.+..|+..  .++.++
T Consensus       158 ~~~~~~~~---------------~~~~lvEe~i~~g~e~sv~~~~d~~G--~~~~~~  197 (369)
T 3aw8_A          158 LEALKALG---------------GRGLILEGFVPFDREVSLLAVRGRTG--EVAFYP  197 (369)
T ss_dssp             HHHHTTTC---------------SSSEEEEECCCCSEEEEEEEEECTTS--CEEECC
T ss_pred             HHHHHhcC---------------CCcEEEEEcCCCCEEEEEEEEECCCC--CEEEEC
Confidence            88876641               14799999999889999999999753  444444

>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A

Probab=99.22  E-value=1.1e-10  Score=113.12  Aligned_cols=105  Identities=15%  Similarity=0.094  Sum_probs=82.9

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHH----HHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAI----QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE  102 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a----~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e  102 (394)
                      ...+++..|++|+++|||+|++.++.+.+++.+++    +++|   +|+||||....  .|+         ||.++ |++
T Consensus       104 ~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~g---~PvvvKP~~~~--~s~---------Gv~~v~~~~  169 (317)
T 4eg0_A          104 LGLDKFRTKLVWQQTGVPTPPFETVMRGDDYAARATDIVAKLG---LPLFVKPASEG--SSV---------AVLKVKTAD  169 (317)
T ss_dssp             HHHCHHHHHHHHHHTTCCCCCEEEEETTSCHHHHHHHHHHHHC---SCEEEEECC----------------CCEEECSGG
T ss_pred             HHhCHHHHHHHHHHCCcCCCCEEEEECchhHHHHHHHHHHhcC---CCEEEEeCCCC--CCC---------CEEEECCHH
Confidence            34689999999999999999999999988887777    7888   99999997533  233         57788 999


Q ss_pred             HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159          103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC  161 (394)
Q Consensus       103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s  161 (394)
                      ++.+++++....             -..++||||++.++|+.+++..|+..  |++...
T Consensus       170 el~~a~~~~~~~-------------~~~~lvEe~i~~G~E~~v~vl~~~~~--~~~~i~  213 (317)
T 4eg0_A          170 ALPAALSEAATH-------------DKIVIVEKSIEGGGEYTACIAGDLDL--PLIKIV  213 (317)
T ss_dssp             GHHHHHHHHTTT-------------CSEEEEEECCCSSEEEEEEEETTCCC--CCEEEE
T ss_pred             HHHHHHHHHHhC-------------CCeEEEEcCCCCCcEEEEEEECCccc--ceEEEe
Confidence            999998876422             15899999998789999999988644  555554

>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*

Probab=99.22  E-value=1.5e-10  Score=115.98  Aligned_cols=103  Identities=15%  Similarity=0.128  Sum_probs=84.4

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHH----HHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVD----EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE  102 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~e----ea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e  102 (394)
                      ...+++.+|++|+++|||+|++.++.+.+    ++.++++++|   +|+||||...  +.++         ||.++ |++
T Consensus       156 ~~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~lg---~PvvVKP~~g--gss~---------Gv~~v~~~~  221 (386)
T 3e5n_A          156 VAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLG---LPLFVKPANQ--GSSV---------GVSQVRTAD  221 (386)
T ss_dssp             HHHBHHHHHHHHHHTTCCBCCEEEEEHHHHTTCCHHHHHHHHC---SSEEEEESBS--CSST---------TCEEECSGG
T ss_pred             HHhCHHHHHHHHHHCCCCCCCEEEEeCcccchhhHHHHHHhcC---CCEEEEECCC--CcCC---------CEEEECCHH
Confidence            33578999999999999999999999888    7888889998   9999999753  3344         68888 999


Q ss_pred             HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeee
Q 016159          103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG  160 (394)
Q Consensus       103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~  160 (394)
                      |+.+++++++..          +   ..++|||+++ ++|+.+++..|+.  .+++..
T Consensus       222 el~~a~~~a~~~----------~---~~vlVEe~I~-G~E~~v~vl~~~~--~~~~~~  263 (386)
T 3e5n_A          222 AFAAALALALAY----------D---HKVLVEAAVA-GREIECAVLGNAV--PHASVC  263 (386)
T ss_dssp             GHHHHHHHHTTT----------C---SEEEEEECCC-SEEEEEEEECSSS--CEEEEE
T ss_pred             HHHHHHHHHHhC----------C---CcEEEEcCCC-CeEEEEEEEeCCC--ceEEEe
Confidence            999998887532          1   4799999999 6999999998865  245443

>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*

Probab=99.21  E-value=2.3e-10  Score=120.59  Aligned_cols=105  Identities=18%  Similarity=0.186  Sum_probs=87.3

Q ss_pred             CCHHHHHHHHHHcCCCCCCcee-----------------------------eCCHHHHHHHHHHhCCCCCcEEEEEeeec
Q 016159           30 IHEYQGAELMAKYGINVPKGLA-----------------------------VASVDEVKKAIQDAFPDHKELVVKSQILA   80 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~-----------------------------~~s~eea~~~a~~lg~~~~PvVvK~q~~~   80 (394)
                      -++..+|++|+++|||+|++..                             +.+.+|+.++++++|   ||+||||..  
T Consensus       179 ~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iG---yPvVVKp~~--  253 (587)
T 3jrx_A          179 GDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIG---FPLMIKASE--  253 (587)
T ss_dssp             CSHHHHHHHHHHTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHC---SSEEEEETT--
T ss_pred             CCHHHHHHHHHHcCCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcC---CeEEEEeCC--
Confidence            5889999999999999999987                             889999999999998   999999965  


Q ss_pred             CCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeee
Q 016159           81 GGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIII  159 (394)
Q Consensus        81 ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~  159 (394)
                      |+-||         ||+++ |++|+.++++++....        .+   ..++||+|++..+|+.+.+..|...  .++.
T Consensus       254 GgGGk---------Gv~iV~s~eEL~~a~~~a~~~~--------~~---~~vlVEeyI~g~rei~V~vl~D~~G--~vv~  311 (587)
T 3jrx_A          254 GGGGK---------GIRKAESAEDFPILFRQVQSEI--------PG---SPIFLMKLAQHARHLEVQILADQYG--NAVS  311 (587)
T ss_dssp             CCSSS---------SEEEECSTTTHHHHHHHHHHHS--------TT---CCEEEEECCCSCEEEEEEEEECSSS--CEEE
T ss_pred             CCCCC---------CeEEeCCHHHHHHHHHHHHhhc--------cC---CCEEEEEecCCCcEEEEEEEEcCCC--CEEE
Confidence            33355         69999 9999999998876432        11   4799999999779999999999753  5555


Q ss_pred             ec
Q 016159          160 GC  161 (394)
Q Consensus       160 ~s  161 (394)
                      ++
T Consensus       312 l~  313 (587)
T 3jrx_A          312 LF  313 (587)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=99.20  E-value=8.5e-11  Score=118.30  Aligned_cols=97  Identities=16%  Similarity=0.223  Sum_probs=82.8

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeC--CHHHHHHHHHHhCCCCCcEEEEEeeecCC-CCCCcccCCCcccEEEC-CHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVA--SVDEVKKAIQDAFPDHKELVVKSQILAGG-RGLGTFKSGLKGGVHIV-KKE  102 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~--s~eea~~~a~~lg~~~~PvVvK~q~~~gg-RgK~~~~~~~~GGV~l~-s~e  102 (394)
                      +...+++..|++|+++|||+|++..+.  +.+++.++++++|   +|+||||..  ++ .||         ||.++ |++
T Consensus       119 ~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~g---~P~VvKp~~--gg~~g~---------Gv~~v~~~~  184 (403)
T 3k5i_A          119 RTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLG---YPLMLKSKT--MAYDGR---------GNFRVNSQD  184 (403)
T ss_dssp             HHHTSHHHHHHHHHTTTCCBCCEEEESSCCHHHHHHHHHHHC---SSEEEEESS--SCCTTT---------TEEEECSTT
T ss_pred             HHhcCHHHHHHHHHHCCcCCCCEEEEcCCCHHHHHHHHHHhC---CCEEEEeCC--CCcCCC---------CEEEECCHH
Confidence            445789999999999999999999999  9999999999998   999999964  32 355         68888 999


Q ss_pred             HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      |+.++++.+.            +   ..++||||++.+.|+.+.+.+|+.
T Consensus       185 el~~a~~~~~------------~---~~~lvEe~i~~~~E~sv~v~~~~~  219 (403)
T 3k5i_A          185 DIPEALEALK------------D---RPLYAEKWAYFKMELAVIVVKTKD  219 (403)
T ss_dssp             SHHHHHHHTT------------T---SCEEEEECCCEEEEEEEEEEECSS
T ss_pred             HHHHHHHhcC------------C---CcEEEecCCCCCeEEEEEEEEcCC
Confidence            9998887641            1   479999999978999999999864

>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A

Probab=99.19  E-value=2.1e-10  Score=119.91  Aligned_cols=107  Identities=18%  Similarity=0.175  Sum_probs=84.9

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCcee-----------------------------eCCHHHHHHHHHHhCCCCCcEEEEEee
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLA-----------------------------VASVDEVKKAIQDAFPDHKELVVKSQI   78 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~-----------------------------~~s~eea~~~a~~lg~~~~PvVvK~q~   78 (394)
                      ..-++..+|++|+++|||+|++..                             +.+.+|+.++++++|   ||+||||..
T Consensus       161 ~~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~ig---yPvVVKp~~  237 (540)
T 3glk_A          161 ALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIG---FPLMIKASE  237 (540)
T ss_dssp             ---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHC---SSEEEEETT
T ss_pred             HhCCHHHHHHHHHHcCCCCCCcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcC---CcEEEEECC
Confidence            345899999999999999999987                             889999999999998   999999965


Q ss_pred             ecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCcee
Q 016159           79 LAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPI  157 (394)
Q Consensus        79 ~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pv  157 (394)
                        |+-|+         ||+++ |++|+.++++++....        .+   ..++||||++..+|+.+.+..|+. + .+
T Consensus       238 --ggGG~---------Gv~iv~~~~eL~~a~~~~~~~~--------~~---~~vlVEe~I~g~rei~V~vl~d~~-G-~v  293 (540)
T 3glk_A          238 --GGGGK---------GIRKAESAEDFPILFRQVQSEI--------PG---SPIFLMKLAQHARHLEVQILADQY-G-NA  293 (540)
T ss_dssp             --CC-------------EEEECSTTTHHHHHHHHHHHS--------TT---CCEEEEECCSSEEEEEEEEEECTT-S-CE
T ss_pred             --CCCCC---------CEEEECCHHHHHHHHHHHHhhc--------cC---CCEEEEEecCCCcEEEEEEEEcCC-C-CE
Confidence              33344         69999 9999999998876432        11   479999999966999999999975 3 56


Q ss_pred             eeec
Q 016159          158 IIGC  161 (394)
Q Consensus       158 i~~s  161 (394)
                      +.++
T Consensus       294 v~l~  297 (540)
T 3glk_A          294 VSLF  297 (540)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5554

>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=2.8e-12  Score=104.38  Aligned_cols=97  Identities=16%  Similarity=0.175  Sum_probs=76.1

Q ss_pred             CCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      .+++.+|++|+++|||+|++.  .+.+++++.++++++|   +|+|+||..  ++.|+         ||.++ |++++.+
T Consensus         7 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~---~P~vvKp~~--~~~~~---------gv~~v~~~~el~~   72 (108)
T 2cqy_A            7 GDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIG---YPVMIKASA--GGGGK---------GMRIAWDDEETRD   72 (108)
T ss_dssp             CCCCCSTTCCCSSCCCCCSCCCSCBSSHHHHHHHHHHHC---SSEEEEETT--SCCTT---------TCEEESSHHHHHH
T ss_pred             cCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcC---CCEEEEECC--CCCCc---------cEEEeCCHHHHHH
Confidence            456677889999999999998  8899999999999998   999999975  33344         68888 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEE
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI  147 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi  147 (394)
                      ++++++.....  +   .+  -..++||||+++..|+.+++
T Consensus        73 ~~~~~~~~~~~--~---~~--~~~~lvee~i~g~~E~~v~v  106 (108)
T 2cqy_A           73 GFRLSSQEAAS--S---FG--DDRLLIEKFIDNPRHISGPS  106 (108)
T ss_dssp             HHHHHHHHHHH--H---TS--SCCEEEEECCSSSSCCCSCC
T ss_pred             HHHHHHHHHHh--h---cC--CCcEEEeeccCCCcEEEEEe
Confidence            99988643210  0   11  15799999999667887654

>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2

Probab=99.17  E-value=3.4e-10  Score=113.96  Aligned_cols=104  Identities=27%  Similarity=0.322  Sum_probs=85.1

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      +..-+++.+|++|+++|||+|++..+++.+|+.++++++|   +|+||||....+  |+         ||.++ |++|+.
T Consensus       102 ~~~~dK~~~k~~l~~~gip~p~~~~~~~~~e~~~~~~~~g---~PvvvKp~~~~g--g~---------Gv~~v~~~~el~  167 (412)
T 1vkz_A          102 RLEGSKVYAKRFMKKYGIRTARFEVAETPEELREKIKKFS---PPYVIKADGLAR--GK---------GVLILDSKEETI  167 (412)
T ss_dssp             HHHHCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHTTSC---SSEEEEESSCCS--SC---------CEEEESSHHHHH
T ss_pred             HHhcCHHHHHHHHHHcCCCCCCEEEECCHHHHHHHHHhcC---CCEEEEeCCCCC--CC---------CEEEECCHHHHH
Confidence            3446889999999999999999999999999999999998   999999976443  44         69999 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +++++++....      ..|.. ..++||||++ +.|+.+.+..|.+
T Consensus       168 ~a~~~~~~~~~------~~g~~-~~vlvEe~i~-G~E~sv~~~~dg~  206 (412)
T 1vkz_A          168 EKGSKLIIGEL------IKGVK-GPVVIDEFLA-GNELSAMAVVNGR  206 (412)
T ss_dssp             HHHHHHHHTSS------STTCC-SCEEEEECCC-SEEEEEEEEEETT
T ss_pred             HHHHHHHhhcc------ccCCC-CeEEEEECCc-CcEEEEEEEECCC
Confidence            99998864310      01211 3799999999 8999999998754

>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*

Probab=99.17  E-value=4.1e-10  Score=114.32  Aligned_cols=169  Identities=15%  Similarity=0.251  Sum_probs=113.4

Q ss_pred             CCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      -+++..|++|+++|||+|++.  .+.+++|+.++++++|   ||+||||..  |+.|+         ||.++ |++++.+
T Consensus       118 ~dK~~~~~~l~~~Gip~p~~~~~~~~~~~e~~~~~~~~g---~PvvvKp~~--g~gg~---------Gv~~v~~~~el~~  183 (446)
T 3ouz_A          118 SDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIG---YPVILKAAA--GGGGR---------GMRVVENEKDLEK  183 (446)
T ss_dssp             HSHHHHHHHHHHTTCCBCSBCSSSCCSHHHHHHHHHHHC---SSEEEEETT--CCTTC---------SEEEECSGGGHHH
T ss_pred             CCHHHHHHHHHHcCCCcCCCcccCCCCHHHHHHHHHHhC---CCEEEEECC--CCCCC---------CEEEECCHHHHHH
Confidence            578899999999999999997  8899999999999998   999999974  33344         69999 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCC
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV  186 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p  186 (394)
                      +++++.......     .+  -..++||||+++.+|+.+.+..|...  .++.++ .....+   .+.+ .++..  ..|
T Consensus       184 ~~~~~~~~~~~~-----~~--~~~~lvEe~i~g~~e~~v~v~~d~~g--~~~~~~-~~~~~~---~~~~-~~~~~--~~p  247 (446)
T 3ouz_A          184 AYWSAESEAMTA-----FG--DGTMYMEKYIQNPRHIEVQVIGDSFG--NVIHVG-ERDCSM---QRRH-QKLIE--ESP  247 (446)
T ss_dssp             HHHHHHHHHHHH-----HS--CCCEEEEECCSSCEEEEEEEEECTTS--CEEEEE-EEEEEE---EETT-EEEEE--EES
T ss_pred             HHHHHHHHHHHh-----cC--CCCEEEEeCCCCCcEEEEEEEEcCCC--CEEEEe-eceeee---eecC-ceEEE--ECC
Confidence            998876442100     01  14799999999779999999999753  555554 212222   2222 22222  233


Q ss_pred             CCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcC--Ccceeeecceee
Q 016159          187 FNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCES--DCTLLEINPLAE  238 (394)
Q Consensus       187 ~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~--d~~~lEINPLvv  238 (394)
                      ...++..       .+.++++.+|+.+..-          .+++.+.  +..++||||..-
T Consensus       248 ~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~----------ve~~~~~~g~~~~iEiNpR~~  298 (446)
T 3ouz_A          248 AILLDEKTRTRLHETAIKAAKAIGYEGAGT----------FEFLVDKNLDFYFIEMNTRLQ  298 (446)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHTTCCEEEE----------EEEEECTTCCEEEEEEESSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCCCceE----------EEEEEeCCCCEEEEEeECCCC
Confidence            3235553       3344555666653100          1122232  477899999864

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=99.15  E-value=1.4e-10  Score=117.50  Aligned_cols=104  Identities=16%  Similarity=0.136  Sum_probs=84.1

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHH----hCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQD----AFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK  101 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~----lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~  101 (394)
                      +..-+++..|++|+++|||+|++..+.+.+|+.+++++    +    +|+||||.. .|+.||         ||.++ |+
T Consensus       129 ~~~~dK~~~k~~l~~~Gip~p~~~~v~~~~e~~~~~~~~~~~~----~P~VvKp~~-~g~~G~---------Gv~~v~~~  194 (419)
T 4e4t_A          129 AVAQDRIAEKRFIEASGVPVAPHVVIESAAALAALDDAALDAV----LPGILKTAR-LGYDGK---------GQVRVSTA  194 (419)
T ss_dssp             HHHTCHHHHHHHHHHTTCCBCCEEEECSHHHHHTSCHHHHHTT----CSEEEEESS-SCCTTT---------TEEEECSH
T ss_pred             HHhcCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhhcccc----CCEEEEecC-CCCCCC---------ceEEECCH
Confidence            34468899999999999999999999999999888777    6    699999951 344455         68899 99


Q ss_pred             HHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159          102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC  161 (394)
Q Consensus       102 ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s  161 (394)
                      +|+.++++.+ +           +   ..++||||++.++|+.+.+.+|...  -++.+.
T Consensus       195 ~el~~a~~~~-~-----------~---~~~lvEe~i~~~~Eisv~v~~~~~G--~~~~~~  237 (419)
T 4e4t_A          195 REARDAHAAL-G-----------G---VPCVLEKRLPLKYEVSALIARGADG--RSAAFP  237 (419)
T ss_dssp             HHHHHHHHHT-T-----------T---CCEEEEECCCEEEEEEEEEEECTTS--CEEECC
T ss_pred             HHHHHHHHhc-C-----------C---CcEEEeecCCCCeEEEEEEEEcCCC--CEEEEe
Confidence            9999988764 1           1   4799999999889999999998763  344444

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*

Probab=99.15  E-value=1.3e-10  Score=130.43  Aligned_cols=99  Identities=17%  Similarity=0.214  Sum_probs=84.5

Q ss_pred             CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA  108 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~  108 (394)
                      -+++..|++|+++|||+|++..+.+.+|+.++++++|   ||+||||....|  |+         ||.++ |++|+.+++
T Consensus       127 ~DK~~~k~~l~~~Gipvp~~~~v~~~~ea~~~~~~ig---~PvVvKp~~~~G--g~---------Gv~iv~~~eel~~~~  192 (1073)
T 1a9x_A          127 EDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVG---FPCIIRPSFTMG--GS---------GGGIAYNREEFEEIC  192 (1073)
T ss_dssp             HSHHHHHHHHHHTTCCCCSEEEESSHHHHHHHHHHHC---SSEEEEETTCCT--TT---------TCEEESSHHHHHHHH
T ss_pred             hCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHcC---CCEEEEECCCCC--CC---------ceEEeCCHHHHHHHH
Confidence            5888999999999999999999999999999999998   999999976444  33         57788 999999999


Q ss_pred             HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                      ++.+...           ....++|||++++.+|+.+.+.+|+..
T Consensus       193 ~~~~~~~-----------~~~~vlvEe~I~G~~E~~v~v~~d~~g  226 (1073)
T 1a9x_A          193 ARGLDLS-----------PTKELLIDESLIGWKEYEMEVVRDKND  226 (1073)
T ss_dssp             HHHHHHC-----------TTSCEEEEECCTTSEEEEEEEEECTTC
T ss_pred             HHHHhhC-----------CCCcEEEEEccCCCeEEEEEEEEeCCC
Confidence            8876432           124899999999778999999999754

>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*

Probab=99.14  E-value=3.9e-10  Score=111.92  Aligned_cols=97  Identities=14%  Similarity=0.164  Sum_probs=82.0

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHH----HHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVD----EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE  102 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~e----ea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e  102 (394)
                      ...+++.+|++|+++|||+|++..+++.+    ++.++++++|   +|+||||..  ++.|+         ||.++ |++
T Consensus       137 ~~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~lg---~PvvVKP~~--ggss~---------Gv~~v~~~~  202 (364)
T 3i12_A          137 ACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLG---LPLFVKPAN--QGSSV---------GVSKVANEA  202 (364)
T ss_dssp             HHHCHHHHHHHHHHTTCCBCCEEEEETTTGGGCCHHHHHHHHC---SSEEEEETT--CCTTT---------TCEEESSHH
T ss_pred             HHHCHHHHHHHHHHCCCCCCCEEEEEccccchhhHHHHHHhcC---CCEEEEECC--CCCCc---------CeEEeCCHH
Confidence            34689999999999999999999999887    8888889998   999999974  44444         68888 999


Q ss_pred             HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      |+.+++++++...             ..++||||++ ++|+.+++..|+.
T Consensus       203 el~~a~~~a~~~~-------------~~vlVEe~I~-G~E~~v~vl~~~~  238 (364)
T 3i12_A          203 QYQQAVALAFEFD-------------HKVVVEQGIK-GREIECAVLGNDN  238 (364)
T ss_dssp             HHHHHHHHHHHHC-------------SEEEEEECCC-SEEEEEEEEESSS
T ss_pred             HHHHHHHHHHhcC-------------CcEEEEcCcC-CeEEEEEEEeCCC
Confidence            9999988875421             4899999999 5999999998864

>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}

Probab=99.10  E-value=7.2e-10  Score=110.61  Aligned_cols=96  Identities=13%  Similarity=0.132  Sum_probs=76.3

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHH----HHHHHHHhCCCCCc-EEEEEeeecCCCCCCcccCCCcccEEEC-CH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDE----VKKAIQDAFPDHKE-LVVKSQILAGGRGLGTFKSGLKGGVHIV-KK  101 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~ee----a~~~a~~lg~~~~P-vVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~  101 (394)
                      ...+++.+|++|+++|||+|++..+.+.++    +.++++++|   +| +||||..  ++.|+         ||.++ |+
T Consensus       137 ~~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~lg---~P~vvVKP~~--ggss~---------Gv~~v~~~  202 (372)
T 3tqt_A          137 VCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWG---TSELFVKAVS--LGSSV---------ATLPVKTE  202 (372)
T ss_dssp             HHHSHHHHHHHHHHTTCCBCCCEEECTTSCCTTHHHHHHHHC------CEEEEESS--CCSGG---------GEEEECSH
T ss_pred             HHhCHHHHHHHHHHCCcCCCCEEEEechhhhhhHHHHHHHhcC---CCeEEEEECC--CCCCC---------CEEEECCH
Confidence            345788999999999999999999987764    456778888   99 9999964  44444         79899 99


Q ss_pred             HHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       102 ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                      +|+.+++++.+..          +   ..++|||+++ ++|+.+++..|+
T Consensus       203 ~eL~~a~~~a~~~----------~---~~vlVEe~I~-G~E~~v~vl~~~  238 (372)
T 3tqt_A          203 TEFTKAVKEVFRY----------D---DRLMVEPRIR-GREIECAVLGNG  238 (372)
T ss_dssp             HHHHHHHHHHTTT----------C---SCEEEEECCC-SEEEEEEEEESS
T ss_pred             HHHHHHHHHHHhc----------C---CCEEEECCCC-CEEEEEEEEeCC
Confidence            9999998876432          1   4799999999 899999999886

>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A

Probab=99.09  E-value=4.3e-10  Score=114.19  Aligned_cols=103  Identities=22%  Similarity=0.273  Sum_probs=86.0

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ...+++.+|++|+++|||+|++..+++.+++.++++++|   +|+||||....+  ||         ||.++ |++|+.+
T Consensus       104 ~~~dK~~~k~~l~~~GIptp~~~~~~~~~ea~~~~~~~g---~PvVvKp~~~~g--g~---------GV~iv~~~~el~~  169 (431)
T 3mjf_A          104 LEGSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQKG---APIVIKADGLAA--GK---------GVIVAMTQEEAET  169 (431)
T ss_dssp             HHHCHHHHHHHHHHTTCSBCCEEEESCHHHHHHHHHHHC---SSEEEEESSSCT--TC---------SEEEECSHHHHHH
T ss_pred             HhhCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHHcC---CeEEEEECCCCC--CC---------cEEEeCCHHHHHH
Confidence            446889999999999999999999999999999999998   999999986544  44         68889 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      ++++++.....       |..-..++||||++ +.|+.+.+..|..
T Consensus       170 a~~~~~~~~~~-------g~~~~~vlvEe~i~-G~E~sv~~~~dg~  207 (431)
T 3mjf_A          170 AVNDMLAGNAF-------GDAGHRIVVEEFLD-GEEASFIVMVDGE  207 (431)
T ss_dssp             HHHHHHTTHHH-------HCCCCCEEEEECCC-SEEEEEEEEEESS
T ss_pred             HHHHHHhhccc-------cCCCCeEEEEEeeC-CcEEEEEEEEcCC
Confidence            99998743211       11125899999999 7999999998864

>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A

Probab=99.08  E-value=2.2e-09  Score=112.22  Aligned_cols=101  Identities=13%  Similarity=0.142  Sum_probs=84.1

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceee--------------------------CCHHHHHHHHHHhCCCCCcEEEEEeeec
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAV--------------------------ASVDEVKKAIQDAFPDHKELVVKSQILA   80 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~--------------------------~s~eea~~~a~~lg~~~~PvVvK~q~~~   80 (394)
                      +..-+++.+|++|+++|||+|++..+                          .+++|+.++++++|   +|+||||....
T Consensus       169 ~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g---~PvVvKp~~g~  245 (554)
T 1w96_A          169 RSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIG---FPVMIKASEGG  245 (554)
T ss_dssp             HHSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHC---SSEEEEETTCC
T ss_pred             HHHhCHHHHHHHHHHCCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHHHHcC---CCEEEEECCCC
Confidence            34568899999999999999998764                          78999999999998   99999997644


Q ss_pred             CCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159           81 GGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus        81 ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      |  |+         ||.++ |++|+.++++++....        .+   ..++||||++.++|+.+.+..|..
T Consensus       246 g--g~---------Gv~~v~~~~el~~a~~~~~~~~--------~~---~~vlvEe~i~g~~e~sv~vl~d~~  296 (554)
T 1w96_A          246 G--GK---------GIRQVEREEDFIALYHQAANEI--------PG---SPIFIMKLAGRARHLEVQLLADQY  296 (554)
T ss_dssp             T--TT---------TEEEECSHHHHHHHHHHHHHHS--------TT---CCEEEEECCCSCEEEEEEEEECTT
T ss_pred             C--Cc---------eEEEECCHHHHHHHHHHHHhhc--------cC---CCEEEEEecCCCcEEEEEEEEcCC
Confidence            3  44         68889 9999999998876432        12   479999999977999999999874

>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}

Probab=99.07  E-value=1.3e-09  Score=107.78  Aligned_cols=96  Identities=19%  Similarity=0.270  Sum_probs=77.0

Q ss_pred             CCCHHHHHHHHHHcCCCCCCceeeCCHH---HHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159           29 NIHEYQGAELMAKYGINVPKGLAVASVD---EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV  104 (394)
Q Consensus        29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~e---ea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~  104 (394)
                      ..+++.+|++|+++|||+|++..+.+.+   ++.++++++|   ||+||||..  ++.|+         ||.++ |++++
T Consensus       137 ~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~lg---~PvvVKP~~--gg~s~---------Gv~~v~~~~el  202 (357)
T 4fu0_A          137 CMDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLT---YPLFIKPVR--AGSSF---------GITKVIEKQEL  202 (357)
T ss_dssp             HHCHHHHHHHHHHTTCBCCCEEEEEGGGHHHHHHHHHHHCC---SSEEEEETT--CSSST---------TCEEESSHHHH
T ss_pred             HhCHHHHHHHHHHCCCCCCCEEeecCCChHHHHHHHHHhcC---CCEEEEECC--CCCCC---------ceEEeccHHhH
Confidence            3678999999999999999999886543   3456677898   999999954  44454         68888 99999


Q ss_pred             HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      .++++.....          +   ..++||++++ ++|+.+++..|..
T Consensus       203 ~~~~~~a~~~----------~---~~vlvE~~i~-G~e~~v~vl~~~~  236 (357)
T 4fu0_A          203 DAAIELAFEH----------D---TEVIVEETIN-GFEVGCAVLGIDE  236 (357)
T ss_dssp             HHHHHHHTTT----------C---SEEEEEECCC-SEEEEEEEEESSS
T ss_pred             HHHHHHHhcc----------C---CeEEEEEecC-CEEEEEEEEecCC
Confidence            9988876432          2   5799999997 8999999988754

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=99.07  E-value=6.1e-09  Score=103.79  Aligned_cols=99  Identities=14%  Similarity=0.175  Sum_probs=83.3

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      ....+++..|++|+++|||+|++..+.+.+|+.++++++|   ||+||||... ++.|+         ||.++ |++++.
T Consensus       108 ~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~g---~P~vvKp~~~-~~~g~---------Gv~~v~~~~el~  174 (389)
T 3q2o_A          108 SKTQNRFTEKNAIEKAGLPVATYRLVQNQEQLTEAIAELS---YPSVLKTTTG-GYDGK---------GQVVLRSEADVD  174 (389)
T ss_dssp             HHTTSHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHC---SSEEEEESSC-CSSSC---------CEEEESSGGGHH
T ss_pred             HHhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcC---CCEEEEeCCC-CCCCC---------CeEEECCHHHHH
Confidence            4457899999999999999999999999999999999998   9999999642 12245         68888 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                      ++++.+..               ..++||||++.+.|+.+.+..|...
T Consensus       175 ~~~~~~~~---------------~~~lvEe~i~g~~E~~v~~~~~~~G  207 (389)
T 3q2o_A          175 EARKLANA---------------AECILEKWVPFEKEVSVIVIRSVSG  207 (389)
T ss_dssp             HHHHHHHH---------------SCEEEEECCCCSEEEEEEEEECTTC
T ss_pred             HHHHhcCC---------------CCEEEEecccCceEEEEEEEEcCCC
Confidence            88876521               4799999999779999999998653

>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}

Probab=99.05  E-value=2.8e-09  Score=108.48  Aligned_cols=106  Identities=19%  Similarity=0.249  Sum_probs=85.3

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE  103 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee  103 (394)
                      +..-+++.+|++|+++|||+|++.  .+++.+|+.++++++|   +|+||||....|  |+         ||.++ |++|
T Consensus       116 ~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~g---~PvvvKp~~g~g--g~---------Gv~~v~~~~e  181 (461)
T 2dzd_A          116 DMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHG---YPIIIKAALGGG--GR---------GMRIVRSKSE  181 (461)
T ss_dssp             HHTTSHHHHHHHHHHTTCCBCCBCSSCCSSHHHHHHHHHHHC---SCEEEEESTTCS--SS---------SEEEECCGGG
T ss_pred             HHhhCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHhcC---CcEEEEeCCCCC--CC---------CEEEeCCHHH
Confidence            345688999999999999999997  7899999999999998   999999976433  44         68889 9999


Q ss_pred             HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                      +.+++++++.....     ..|.  ..++||||+++.+|+.+.+..|...
T Consensus       182 l~~~~~~~~~~~~~-----~~~~--~~~lvEe~i~g~~e~~v~v~~~~~G  224 (461)
T 2dzd_A          182 VKEAFERAKSEAKA-----AFGS--DEVYVEKLIENPKHIEVQILGDYEG  224 (461)
T ss_dssp             HHHHHHHHHHHHHH-----HTSC--CCEEEEECCCSCEEEEEEEEECTTC
T ss_pred             HHHHHHHHHHHHHh-----hcCC--CcEEEEECCCCCeEEEEEEEEcCCC
Confidence            99998887643210     0121  4799999999778999999998653

>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}

Probab=99.04  E-value=1.8e-09  Score=108.16  Aligned_cols=95  Identities=12%  Similarity=0.159  Sum_probs=76.6

Q ss_pred             CCCHHHHHHHHHHcC-CCCCCceeeCCH----HHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHH
Q 016159           29 NIHEYQGAELMAKYG-INVPKGLAVASV----DEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKE  102 (394)
Q Consensus        29 ~L~E~~aK~lL~~~G-Ipvp~~~~~~s~----eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~e  102 (394)
                      ..+++.+|++|+++| ||+|++..+.+.    +++.++++++|   +|+||||..  ++.++         ||.++ |++
T Consensus       159 ~~DK~~~k~~l~~~G~Ipvp~~~~~~~~~~~~~~~~~~~~~lg---~PvvVKP~~--ggss~---------GV~~v~~~~  224 (383)
T 3k3p_A          159 AMDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLI---YPVFVKPAN--MGSSV---------GISKAENRT  224 (383)
T ss_dssp             HHCHHHHHHHHHHHCCCCBCCEEEEETTSCHHHHHHHHHHHCC---SSEEEEECC-----------------CEEESSHH
T ss_pred             HhCHHHHHHHHHhCCCcCCCCEEEEeCccchhHHHHHHHHhcC---CCEEEEeCC--CCCCC---------CEEEECCHH
Confidence            357899999999999 999999999876    57778888998   999999975  33344         68888 999


Q ss_pred             HHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          103 EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       103 e~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                      |+.+++++.+...             ..++||||++ ++|+.+++..|.
T Consensus       225 el~~al~~a~~~~-------------~~vlVEe~I~-G~E~~v~vl~d~  259 (383)
T 3k3p_A          225 DLKQAIALALKYD-------------SRVLIEQGVD-AREIEVGILGNT  259 (383)
T ss_dssp             HHHHHHHHHHHHC-------------SEEEEEECCC-SEEEEEEEEESS
T ss_pred             HHHHHHHHHHhCC-------------CeEEEEcCCC-CeEEEEEEEeCC
Confidence            9999988875321             4899999998 899999999874

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*

Probab=99.01  E-value=4.6e-09  Score=105.97  Aligned_cols=101  Identities=14%  Similarity=0.119  Sum_probs=76.7

Q ss_pred             cCCCHHHHHHHH-HHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           28 LNIHEYQGAELM-AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        28 m~L~E~~aK~lL-~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      ..-+++..|++| +++|||+|++..+++.+++.++++++|   +|+|+||...  +.|+         ||.++ |++|+.
T Consensus       117 ~~~dK~~~k~~l~~~~gip~p~~~~~~~~~~~~~~~~~~g---~P~vvKp~~g--~gg~---------Gv~~v~~~~el~  182 (433)
T 2dwc_A          117 IAMHRERLRETLVKEAKVPTSRYMYATTLDELYEACEKIG---YPCHTKAIMS--SSGK---------GSYFVKGPEDIP  182 (433)
T ss_dssp             HHHCHHHHHHHHHHTSCCCCCCEEEESSHHHHHHHHHHHC---SSEEEEECCC-----------------EEECSGGGHH
T ss_pred             HhhCHHHHHHHHHHhcCCCCCCeeEeCCHHHHHHHHHhcC---CCEEEEECCC--cCCC---------CeEEECCHHHHH
Confidence            345788899999 899999999999999999999999998   9999999753  3344         68888 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                      +++++++....        + .-..++||||++.+.|+.+.+..|.
T Consensus       183 ~~~~~~~~~~~--------~-~~~~~lvEe~i~~g~E~sv~~~~~~  219 (433)
T 2dwc_A          183 KAWEEAKTKAR--------G-SAEKIIVEEHIDFDVEVTELAVRHF  219 (433)
T ss_dssp             HHHHC------------------CCEEEEECCCCSEEEEECCEEEE
T ss_pred             HHHHHHHhhcc--------c-CCCCEEEEccCCCCeeEEEEEEecc
Confidence            98887754321        1 1147999999988899999988875

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=98.97  E-value=7e-10  Score=118.92  Aligned_cols=171  Identities=12%  Similarity=0.152  Sum_probs=65.5

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV  104 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~  104 (394)
                      ..-+++.+|++|+++|||+|++.  .+.+++++.++++++|   ||+|+||...  +-||         ||+++ |++|+
T Consensus       112 ~~~dK~~~k~~l~~~GVPvpp~~~~~~~s~~e~~~~a~~ig---yPvVvKp~~g--gggk---------Gv~iv~~~~el  177 (681)
T 3n6r_A          112 AMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIG---YPVMIKASAG--GGGK---------GMRIAWNDQEA  177 (681)
T ss_dssp             HTTSHHHHHHHHHTTTCCCCCC----------------------------------------------------------
T ss_pred             HhCCHHHHHHHHHHcCcCcCCccccCcCCHHHHHHHHHhcC---CcEEEEECCC--CCCC---------CEEEECCHHHH
Confidence            44689999999999999999985  7889999999999998   9999999753  3344         68899 99999


Q ss_pred             HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEec
Q 016159          105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPI  184 (394)
Q Consensus       105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v  184 (394)
                      .++++++.....     ...|  -..++||||++..+|+.+.+..|...  .++.++ ...+.   +.+.+ .++...  
T Consensus       178 ~~a~~~~~~ea~-----~~fg--~~~vlvEe~I~g~rei~V~v~~d~~G--~vv~l~-~rd~s---~qr~~-~k~~e~--  241 (681)
T 3n6r_A          178 REGFQSSKNEAA-----NSFG--DDRIFIEKFVTQPRHIEIQVLCDSHG--NGIYLG-ERECS---IQRRN-QKVVEE--  241 (681)
T ss_dssp             --------------------------------CCSCEEEEEEEECCSSS--CCEEEE-EEECC---CEETT-EECEEE--
T ss_pred             HHHHHHHHHHHH-----HhCC--CCcEEEEeccCCCcEEEEEEEEeCCC--CEEEEe-eeecc---eeccC-ccEEEe--
Confidence            999888754321     0112  15799999999779999999999753  556554 21122   22233 233333  


Q ss_pred             CCCCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc--CCcceeeecceee
Q 016159          185 DVFNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE--SDCTLLEINPLAE  238 (394)
Q Consensus       185 ~p~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e--~d~~~lEINPLvv  238 (394)
                      .|...++++       .+.++++.+|+.+.--          .+++.+  .+..++|+||..-
T Consensus       242 ~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~----------vEf~~d~dg~~~~lEiNpR~~  294 (681)
T 3n6r_A          242 APSPFLDEATRRAMGEQAVALAKAVGYASAGT----------VEFIVDGQKNFYFLEMNTRLQ  294 (681)
T ss_dssp             ESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEE----------EEEEECTTSCCCCCEEECSCC
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHcCCCceEE----------EEEEEeCCCCEEEEecccccC
Confidence            333335553       3455566677653210          012222  2478999999973

>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*

Probab=98.96  E-value=3.8e-09  Score=104.82  Aligned_cols=94  Identities=13%  Similarity=0.086  Sum_probs=77.6

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-C--HHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-K--KEEV  104 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s--~ee~  104 (394)
                      ..-++...|++|+++|||+|++..+++.+|+.++++++|   ||+||||... |..||         |+.++ |  ++|+
T Consensus        76 ~~~DK~~~k~~l~~~GIptp~~~~v~~~~e~~~~~~~~G---~P~VvKp~~~-G~~Gk---------Gv~~v~~~~~~el  142 (355)
T 3eth_A           76 IIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLG---ELAIVKRRTG-GYDGR---------GQWRLRANETEQL  142 (355)
T ss_dssp             HHHSHHHHHHHHHHTTCCBCCEEEECCGGGHHHHHHHHC---SEEEEEESSS-CCTTT---------TEEEEETTCGGGS
T ss_pred             HhcCHHHHHHHHHHCccCCCCEEEECCHHHHHHHHHHcC---CCEEEEecCC-CCCCC---------eEEEEcCCCHHHH
Confidence            345788899999999999999999999999999999998   9999999642 23455         68888 8  8887


Q ss_pred             HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                      .+++       +        +    .++||+|++.++|+.+.+.+|...
T Consensus       143 ~~a~-------~--------~----~vivEe~I~~~~Eisv~v~~~~~G  172 (355)
T 3eth_A          143 PAEC-------Y--------G----ECIVEQGINFSGEVSLVGARGFDG  172 (355)
T ss_dssp             CGGG-------T--------T----TEEEEECCCCSEEEEEEEEECTTS
T ss_pred             HHHh-------h--------C----CEEEEEccCCCcEEEEEEEEcCCC
Confidence            6521       1        2    599999999889999999988753

>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*

Probab=98.94  E-value=5.3e-09  Score=105.07  Aligned_cols=102  Identities=25%  Similarity=0.275  Sum_probs=84.2

Q ss_pred             CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159           29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL  107 (394)
Q Consensus        29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a  107 (394)
                      .-+++..|++|+++|||+|++..+++.+|+.+++++++   +|+|+||....+  |+         ||.++ |++|+.++
T Consensus       100 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~---~P~vvKp~~~~~--g~---------Gv~~v~~~~el~~~  165 (422)
T 2xcl_A          100 EGSKQFAKDLMKKYDIPTAEYETFTSFDEAKAYVQEKG---APIVIKADGLAA--GK---------GVTVAMTEEEAIAC  165 (422)
T ss_dssp             HHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHC---SSEEEEESSCGG--GT---------CEEEESSHHHHHHH
T ss_pred             hcCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhcC---CCEEEEeCCCCC--CC---------cEEEECCHHHHHHH
Confidence            34888999999999999999999999999999999998   999999975433  44         69899 99999999


Q ss_pred             HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +++++....       .|..-..++||||++ +.|+.+.+..|..
T Consensus       166 ~~~~~~~~~-------~g~~~~~~lvEe~i~-g~E~sv~~~~dG~  202 (422)
T 2xcl_A          166 LHDFLEDEK-------FGDASASVVIEEYLS-GEEFSLMAFVKGE  202 (422)
T ss_dssp             HHHHHTSCT-------TGGGGSSEEEEECCC-SEEEEEEEEEETT
T ss_pred             HHHHHhhhh-------ccCCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence            998865321       122225799999999 8999999988743

>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A

Probab=98.92  E-value=7.5e-09  Score=104.03  Aligned_cols=100  Identities=22%  Similarity=0.305  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA  108 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~  108 (394)
                      -+++..|++|+++|||+|++..+++.+++.++++++|   +|+|+||....+  |+         ||.++ |++|+.+++
T Consensus       101 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~---~PvvvKp~~g~g--g~---------Gv~~v~~~~el~~~~  166 (424)
T 2yw2_A          101 GSKAFAKTFMKKYGIPTARYEVFTDFEKAKEYVEKVG---APIVVKADGLAA--GK---------GAVVCETVEKAIETL  166 (424)
T ss_dssp             HCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHC---SSEEEEESSCCT--TC---------SEEEESSHHHHHHHH
T ss_pred             hCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHcC---CcEEEEeCCCCC--CC---------CEEEECCHHHHHHHH
Confidence            4888999999999999999999999999999999998   999999975433  44         68899 999999999


Q ss_pred             HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                      ++++....       .|..-..++||||++ +.|+.+.+..|.
T Consensus       167 ~~~~~~~~-------~g~~~~~~lvEe~i~-g~E~sv~~~~~G  201 (424)
T 2yw2_A          167 DRFLNKKI-------FGKSSERVVIEEFLE-GEEASYIVMING  201 (424)
T ss_dssp             HHHHTSCT-------TGGGGSSEEEEECCC-SEEEEEEEEEET
T ss_pred             HHHHhhhh-------ccCCCCeEEEEECCC-CcEEEEEEEEcC
Confidence            98865321       222225799999999 899999988864

>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A

Probab=98.92  E-value=6.3e-09  Score=105.80  Aligned_cols=102  Identities=29%  Similarity=0.294  Sum_probs=82.4

Q ss_pred             CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159           29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL  107 (394)
Q Consensus        29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a  107 (394)
                      ..+++..|++|+++|||+|++..+++++|+.+++++++   +|+||||....+  |+         ||.++ |++|+.++
T Consensus       121 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~---~PvVvKp~~~~g--g~---------Gv~~v~~~~el~~~  186 (451)
T 2yrx_A          121 EGSKAFAKELMKKYGIPTADHAAFTSYEEAKAYIEQKG---APIVIKADGLAA--GK---------GVTVAQTVEEALAA  186 (451)
T ss_dssp             HHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHC---SSEEEEECC------C---------CEEEESSHHHHHHH
T ss_pred             hhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhcC---CcEEEEeCCCCC--CC---------cEEEECCHHHHHHH
Confidence            34788999999999999999999999999999999998   999999976443  44         68899 99999999


Q ss_pred             HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +++++....       .|.....++||||++ +.|+.+.+..|.+
T Consensus       187 ~~~~~~~~~-------~g~~~~~~lvEe~i~-G~E~sv~~~~dG~  223 (451)
T 2yrx_A          187 AKAALVDGQ-------FGTAGSQVVIEEYLE-GEEFSFMAFVNGE  223 (451)
T ss_dssp             HHHHHHHSC-------CBTTBCCEEEEECCC-SEEEEEEEEEETT
T ss_pred             HHHHHhccc-------cCCCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence            988865321       122225899999999 8999999988743

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*

Probab=98.91  E-value=1.1e-08  Score=114.88  Aligned_cols=98  Identities=14%  Similarity=0.154  Sum_probs=76.0

Q ss_pred             CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA  108 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~  108 (394)
                      -+++..+++|+++|||+|++..+++.+|+.++++++|   ||+||||....|  |+         ||.++ |++++.+++
T Consensus       673 ~DK~~~~~ll~~~GIp~P~~~~~~s~eea~~~~~~ig---~PvvVKP~~~~g--G~---------Gv~iv~~~~el~~~~  738 (1073)
T 1a9x_A          673 EDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIG---YPLVVRASYVLG--GR---------AMEIVYDEADLRRYF  738 (1073)
T ss_dssp             HSHHHHHHHHHHHTCCCCCEEECCSHHHHHHHHHHHC---SSEEEEC------------------CEEEECSHHHHHHHH
T ss_pred             hCHHHHHHHHHHcCcCCCCceEECCHHHHHHHHHHcC---CCEEEEECCCCC--CC---------CeEEECCHHHHHHHH
Confidence            5678889999999999999999999999999999998   999999976544  33         68899 999999998


Q ss_pred             HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      ++++...           .-..++||+|+++.+|+.+.+..|+.
T Consensus       739 ~~a~~~~-----------~~~~vlvEefI~g~~E~~V~~l~d~~  771 (1073)
T 1a9x_A          739 QTAVSVS-----------NDAPVLLDHFLDDAVEVDVDAICDGE  771 (1073)
T ss_dssp             HHCC-------------------EEEBCCTTCEEEEEEEEECSS
T ss_pred             HHHHhhC-----------CCCcEEEEEccCCCcEEEEEEEEECC
Confidence            8764321           11479999999966699999999874

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.91  E-value=8.2e-10  Score=124.58  Aligned_cols=169  Identities=13%  Similarity=0.153  Sum_probs=63.5

Q ss_pred             CCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      -+++.+|++|+++|||+|++.  .+.+++|+.++++++|   ||+||||....|  |+         ||+++ |++|+.+
T Consensus       133 ~DK~~~k~~l~~~GIPvp~~~~~~v~s~eea~~~a~~ig---yPvVVKp~~g~G--G~---------Gv~iv~s~eEL~~  198 (1165)
T 2qf7_A          133 GNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIG---YPVMLKASWGGG--GR---------GMRVIRSEADLAK  198 (1165)
T ss_dssp             HSHHHHHHHHHHTTCCBC--------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHcCCCCCCeeCcCCCCHHHHHHHHHhcC---CCEEEEeCCCCC--CC---------CEEEECCHHHHHH
Confidence            578899999999999999998  7889999999999998   999999976443  44         68899 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCC
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV  186 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p  186 (394)
                      +++++.....     ...|  -..++||||++.++|+.+.+..|+..  .++.+...    ...+.+.+ .+.  ....|
T Consensus       199 a~~~~~~~a~-----~~fg--~~~vlVEefI~gg~EisV~vl~D~~G--~vv~l~~r----~~s~~r~~-~~~--~e~~P  262 (1165)
T 2qf7_A          199 EVTEAKREAM-----AAFG--KDEVYLEKLVERARHVESQILGDTHG--NVVHLFER----DCSVQRRN-QKV--VERAP  262 (1165)
T ss_dssp             ----------------------------CCCSSEEEEEEEEEECTTS--CEEEEEEE----EEEEEETT-EEE--EEEES
T ss_pred             HHHHHHHHHH-----hhcC--CCcEEEEEeccCCcEEEEEEEEcCCC--cEEEEEee----cccceecc-cce--EEecc
Confidence            8888754321     0012  15799999999889999999999764  34433211    11222222 122  22334


Q ss_pred             CCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc---CCcceeeecceee
Q 016159          187 FNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE---SDCTLLEINPLAE  238 (394)
Q Consensus       187 ~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e---~d~~~lEINPLvv  238 (394)
                      ...++++       .++++++.+|+.+..-          .+++.+   .+..++||||..-
T Consensus       263 a~~l~~~~~~~i~~~a~~i~~alg~~G~~~----------vEf~vd~~dg~~~~iEiNpR~~  314 (1165)
T 2qf7_A          263 APYLSEAQRQELAAYSLKIAGATNYIGAGT----------VEYLMDADTGKFYFIEVNPRIQ  314 (1165)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHTTCCEEEE----------EEEEEETTTTEEEEEEEECSCC
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcCCCccee----------EEEEEECCCCCEEEEEEEcCCC
Confidence            3335653       4455666777654210          122333   2478999999865

>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}

Probab=98.89  E-value=1.7e-09  Score=116.85  Aligned_cols=114  Identities=18%  Similarity=0.176  Sum_probs=89.9

Q ss_pred             CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHH-HHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC----CHHHHH
Q 016159           31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAI-QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV----KKEEVE  105 (394)
Q Consensus        31 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a-~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~----s~ee~~  105 (394)
                      ++..+|++|+++|||+|++.++.+++++.+++ +.+|   +|+||||..  |+.|+         ||.++    |.+++.
T Consensus       484 DK~~tk~lL~~~GIPvP~~~~~~~~~ea~~~~~~~~g---~PvVVKP~~--G~~G~---------GV~iv~~~~s~eel~  549 (750)
T 3ln6_A          484 NKVVTKKILDEKHFPTPFGDEFTDRKEALNYFSQIQD---KPIVVKPKS--TNFGL---------GISIFKTSANLASYE  549 (750)
T ss_dssp             TSHHHHHHHHHTTCCCCCCCCEETTTTHHHHHHHSSS---SCEEEEETT--CCSSS---------SCEEESSCCCHHHHH
T ss_pred             CHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcC---CcEEEEeCC--CCCCC---------CEEEEeCCCCHHHHH
Confidence            78899999999999999999999999998877 6677   999999954  55566         57763    799999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCC----ceeeeeccCCCcceeeccc
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTA----GPIIIGCSKGGTSIEDLAE  173 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~----~Pvi~~s~~GGv~iE~~~~  173 (394)
                      ++++.++..          +   ..++||||++ |.|+.+.+..|+...    -|..+.| .|+..|+++-+
T Consensus       550 ~a~~~~~~~----------~---~~vlVEefI~-G~E~~v~Vvgg~vvaa~~r~p~~v~G-dG~~tI~eLI~  606 (750)
T 3ln6_A          550 KAIDIAFTE----------D---SAILVEEYIE-GTEYRFFVLEGDCIAVLLRVAANVVG-DGIHTISQLVK  606 (750)
T ss_dssp             HHHHHHHHH----------C---SEEEEEECCC-SEEEEEEEETTEEEEEEEEECCEEEC-CTTCCHHHHHH
T ss_pred             HHHHHHHhh----------C---CcEEEEeccC-CCEEEEEEECCEEEEEEEEecceEec-CCccCHHHHHH
Confidence            999887632          1   5899999999 899999998776542    1223344 78888887654

>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}

Probab=98.88  E-value=1e-08  Score=100.74  Aligned_cols=94  Identities=21%  Similarity=0.205  Sum_probs=76.0

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ...+++..|++|+++|||+|++.++++.+  ...++++|   +|+||||...  +.++         ||.++ |++++.+
T Consensus       129 ~~~dK~~~k~~l~~~Gip~p~~~~~~~~~--~~~~~~lg---~PvvvKP~~~--~~s~---------Gv~~v~~~~el~~  192 (346)
T 3se7_A          129 LCMDKSLTYLVARSAGIATPNFWTVTADE--KIPTDQLT---YPVFVKPARS--GSSF---------GVSKVAREEDLQG  192 (346)
T ss_dssp             HHHSHHHHHHHHHHTTCBCCCEEEEETTS--CCCTTTCC---SSEEEEESSC--CTTT---------TCEEECSHHHHHH
T ss_pred             HHhCHHHHHHHHHHcCcCcCCEEEEcCcH--HHHHHhcC---CCEEEEeCCC--CCCc---------CEEEECCHHHHHH
Confidence            34688999999999999999999998765  33455677   9999999753  3344         68888 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                      ++++++..          +   ..++||||++ ++|+.+++..|.
T Consensus       193 a~~~~~~~----------~---~~vlvEe~I~-G~E~~v~vl~~~  223 (346)
T 3se7_A          193 AVEAAREY----------D---SKVLIEEAVI-GTEIGCAVMGNG  223 (346)
T ss_dssp             HHHHHTTT----------C---SEEEEEECCC-SEEEEEEEEEET
T ss_pred             HHHHHHhC----------C---CcEEEEeCcC-CEEEEEEEEecC
Confidence            98887532          1   5899999999 899999999885

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}

Probab=98.87  E-value=1.1e-08  Score=103.95  Aligned_cols=101  Identities=26%  Similarity=0.219  Sum_probs=80.6

Q ss_pred             CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCc-EEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKE-LVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL  107 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~P-vVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a  107 (394)
                      -+++..|++|+++|||+|++..+++.+++.++++++|   +| +||||....+  |+         ||.++ |++|+.++
T Consensus       127 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g---~P~vvvKp~~~~g--g~---------Gv~~v~~~~el~~~  192 (452)
T 2qk4_A          127 SSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSAD---FPALVVKASGLAA--GK---------GVIVAKSKEEACKA  192 (452)
T ss_dssp             HBHHHHHHHHHHTTCCBCCEEEESSHHHHHHHHHHCS---SCEEEEEESBC-----C---------CEEECSSHHHHHHH
T ss_pred             cCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhCC---CCeEEEEeCCCCC--CC---------CEEEeCCHHHHHHH
Confidence            5788999999999999999999999999999999998   99 9999976433  44         69999 99999999


Q ss_pred             HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +++++....       .|..-..++||||++ +.|+.+.+..|.+
T Consensus       193 ~~~~~~~~~-------~g~~~~~~lvEe~i~-G~E~sv~~~~dG~  229 (452)
T 2qk4_A          193 VQEIMQEKA-------FGAAGETIVIEELLD-GEEVSCLCFTDGK  229 (452)
T ss_dssp             HHHHTTC--------------CCEEEEECCC-SEEEEEEEEECSS
T ss_pred             HHHHHhhhh-------ccCCCCeEEEEECCC-CCeEEEEEEECCC
Confidence            998865321       122225799999999 8999998887643

>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2

Probab=98.87  E-value=1.5e-08  Score=102.83  Aligned_cols=108  Identities=19%  Similarity=0.252  Sum_probs=85.7

Q ss_pred             CCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      -+++..|++|+++|||+|++.  .+++++++.++++++|   +|+||||....+  |+         ||.++ |++|+.+
T Consensus       113 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g---~PvvvKp~~g~g--g~---------Gv~~v~~~~el~~  178 (451)
T 1ulz_A          113 GDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIG---YPVLLKATAGGG--GR---------GIRICRNEEELVK  178 (451)
T ss_dssp             HSHHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHC---SSEEEEECSSSS--CC---------SCEEESSHHHHHH
T ss_pred             cCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcC---CCEEEEECCCCC--Cc---------cEEEeCCHHHHHH
Confidence            578899999999999999998  7899999999999998   999999976443  44         68888 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeee
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG  160 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~  160 (394)
                      ++++++....   .  ..|.  ..++|||++++++|+.+.+..|...  .++.+
T Consensus       179 ~~~~~~~~~~---~--~~~~--~~~lvEe~i~g~~e~~v~v~~~~~G--~~~~~  223 (451)
T 1ulz_A          179 NYEQASREAE---K--AFGR--GDLLLEKFIENPKHIEYQVLGDKHG--NVIHL  223 (451)
T ss_dssp             HHHHHHHHHH---H--TTSC--CCEEEEECCCSCEEEEEEEEECTTS--CEEEE
T ss_pred             HHHHHHHHHH---H--hcCC--CeEEEEEcccCCeEEEEEEEEcCCC--CEEEE
Confidence            9988764311   0  0121  4799999999778999999998743  34443

>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}

Probab=98.86  E-value=1.1e-08  Score=102.77  Aligned_cols=99  Identities=21%  Similarity=0.256  Sum_probs=82.4

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ..-+++..|++|+++|||+|++..+++.+|+.+++++++   +|+|+||....+  |+         ||.++ |++|+.+
T Consensus        98 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~---~P~vvKp~~~~g--g~---------Gv~~v~~~~el~~  163 (417)
T 2ip4_A           98 IEGSKAFAKGLMERYGIPTARYRVFREPLEALAYLEEVG---VPVVVKDSGLAA--GK---------GVTVAFDLHQAKQ  163 (417)
T ss_dssp             HHHCHHHHHHHHHHTCCCBCCEEEESSHHHHHHHHHHHC---SSEEEECTTSCS--ST---------TCEEESCHHHHHH
T ss_pred             HHcCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHcC---CCEEEEECCCCC--CC---------CEEEeCCHHHHHH
Confidence            335888999999999999999999999999999999998   999999965333  44         68888 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      ++++++...        .+   ..++||||++ +.|+.+.+..|.+
T Consensus       164 ~~~~~~~~~--------~~---~~~lvEe~i~-g~E~sv~~~~~G~  197 (417)
T 2ip4_A          164 AVANILNRA--------EG---GEVVVEEYLE-GEEATVLALTDGE  197 (417)
T ss_dssp             HHHHHTTSS--------SC---CCEEEEECCC-SCEEEEEEEESSS
T ss_pred             HHHHHHhhc--------cC---CeEEEEECcc-CcEEEEEEEEeCC
Confidence            998886321        22   5799999999 8899998887643

>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}

Probab=98.85  E-value=4.9e-08  Score=100.33  Aligned_cols=102  Identities=16%  Similarity=0.180  Sum_probs=76.2

Q ss_pred             hhccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159           25 LRRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE  103 (394)
Q Consensus        25 ~~~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee  103 (394)
                      .-++..+++.+|++|+++|||+|++..+++.+|+.++++++|   +|+||||....|  |+         ||.++ |++|
T Consensus       133 ai~~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~lg---~PvVVKP~~g~g--g~---------Gv~iv~~~ee  198 (474)
T 3vmm_A          133 AAENARDKNKMRDAFNKAGVKSIKNKRVTTLEDFRAALEEIG---TPLILKPTYLAS--SI---------GVTLITDTET  198 (474)
T ss_dssp             HHHHTTCHHHHHHHHHHTTSCCCCEEEECSHHHHHHHHHHSC---SSEEEEESSCCT--TT---------TCEEECCTTS
T ss_pred             HHHHhhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHcC---CCEEEEECCCCc--Cc---------eEEEECCHHH
Confidence            334567899999999999999999999999999999999998   999999975333  44         57788 9999


Q ss_pred             HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCee
Q 016159          104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNE  142 (394)
Q Consensus       104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E  142 (394)
                      +.++++++.............. .-..++||||++ +.|
T Consensus       199 l~~a~~~~~~~~~~~~~~~a~~-~~~~vlVEe~I~-G~e  235 (474)
T 3vmm_A          199 AEDEFNRVNDYLKSINVPKAVT-FEAPFIAEEFLQ-GEY  235 (474)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCC-CSCSEEEEECCC-BCH
T ss_pred             HHHHHHHHHHHHhhcccccccc-CCCeEEEEeCCC-Cce
Confidence            9999888754321000000000 116899999998 444

>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1

Probab=98.84  E-value=1.2e-08  Score=101.60  Aligned_cols=97  Identities=19%  Similarity=0.214  Sum_probs=79.2

Q ss_pred             CCCHHHHHHHHHHcCCCCCCceeeCCHHH----HHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159           29 NIHEYQGAELMAKYGINVPKGLAVASVDE----VKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE  103 (394)
Q Consensus        29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~ee----a~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee  103 (394)
                      ..+++..|++|+++|||+|++.++.+.++    +.++++++|   +|+||||...  +.|+         ||.++ |+++
T Consensus       133 ~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~g---~PvvVKP~~~--~~s~---------Gv~~v~~~~e  198 (377)
T 1ehi_A          133 SFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG---NIVFVKAANQ--GSSV---------GISRVTNAEE  198 (377)
T ss_dssp             HHSHHHHHHHHHTTTCCCCCEEEECTTGGGGCCHHHHHHHHC---SCEEEEESSC--CTTT---------TEEEECSHHH
T ss_pred             HcCHHHHHHHHHHcCCCCCCEEEEeccccchHHHHHHHHhcC---CCEEEEeCCC--CCCc---------CEEEeCCHHH
Confidence            35788999999999999999999988765    667778898   9999999753  3344         68889 9999


Q ss_pred             HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +.+++++.+..          +   ..++|||++++.+|+.+++..|+.
T Consensus       199 l~~a~~~~~~~----------~---~~vlvEe~I~G~~E~~v~vl~~~~  234 (377)
T 1ehi_A          199 YTEALSDSFQY----------D---YKVLIEEAVNGARELEVGVIGNDQ  234 (377)
T ss_dssp             HHHHHHHHTTT----------C---SCEEEEECCCCSCEEEEEEEESSS
T ss_pred             HHHHHHHHHhc----------C---CcEEEEcCCCCCceEEEEEEcCCC
Confidence            99998886432          1   479999999843999999998753

>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}

Probab=98.83  E-value=1.9e-08  Score=102.04  Aligned_cols=110  Identities=17%  Similarity=0.135  Sum_probs=86.1

Q ss_pred             CCCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           29 NIHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        29 ~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      .-+++..|++|+++|||+|++.  .+++++++.++++++|   +|+||||....+  |+         ||.++ |++|+.
T Consensus       112 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g---~PvvvKp~~g~g--g~---------Gv~~v~~~~el~  177 (451)
T 2vpq_A          112 MGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIG---YPVIIKATAGGG--GK---------GIRVARDEKELE  177 (451)
T ss_dssp             HHSHHHHHHHHHHTTCCBCSBCSSCBSCHHHHHHHHHHHC---SSEEEEETTCCT--TC---------SEEEESSHHHHH
T ss_pred             hcCHHHHHHHHHHcCCCcCCCcccCcCCHHHHHHHHHhcC---CcEEEEECCCCC--CC---------CEEEeCCHHHHH
Confidence            3578899999999999999987  8899999999999998   999999975433  44         68889 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC  161 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s  161 (394)
                      +++++++.....  .   .+  -..++||||+++.+|+.+.+..|...  .++.++
T Consensus       178 ~~~~~~~~~~~~--~---~~--~~~~lvEe~i~g~~e~~v~v~~~~~G--~~~~~~  224 (451)
T 2vpq_A          178 TGFRMTEQEAQT--A---FG--NGGLYMEKFIENFRHIEIQIVGDSYG--NVIHLG  224 (451)
T ss_dssp             HHHHHHHHHHHH--H---HS--CCCEEEEECCCSEEEEEEEEEECTTS--CEEEEE
T ss_pred             HHHHHHHHHHHh--h---cC--CCcEEEEEecCCCeEEEEEEEEcCCC--CEEEEe
Confidence            999887643110  0   01  14799999999668999999998753  344443

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=98.83  E-value=4.7e-09  Score=118.73  Aligned_cols=109  Identities=17%  Similarity=0.144  Sum_probs=33.1

Q ss_pred             CCHHHHHHHHHHcCCCCCCc-eeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKG-LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL  107 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~-~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a  107 (394)
                      -+++.+|++|+++|||+|++ .++.+.+|+.++++++|   ||+||||....|  ||         ||+++ |++|+.++
T Consensus       143 ~DK~~ak~ll~~aGIPvpp~~~~v~s~eea~~~a~~iG---yPvVVKP~~GgG--Gk---------GV~iv~s~eEL~~a  208 (1236)
T 3va7_A          143 GLKHSAREIAERAKVPLVPGSGLIKDAKEAKEVAKKLE---YPVMVKSTAGGG--GI---------GLQKVDSEDDIERV  208 (1236)
T ss_dssp             HSTTHHHHHHHHTTCCCCC-------------------------------------------------------------
T ss_pred             cCHHHHHHHHHHcCCCCCCeeEecCCHHHHHHHHHHcC---CCEEEEeCCCCC--CC---------CEEEECCHHHHHHH
Confidence            35778999999999999885 67899999999999998   999999975433  44         68889 99999999


Q ss_pred             HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeec
Q 016159          108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGC  161 (394)
Q Consensus       108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s  161 (394)
                      ++++......     ..+  -..++||||++..+|+.+.+..|...  .++.++
T Consensus       209 ~~~~~~~a~~-----~~~--~~~vlVEeyI~G~rEisV~vl~Dg~g--~vv~l~  253 (1236)
T 3va7_A          209 FETVQHQGKS-----YFG--DAGVFMERFVNNARHVEIQMMGDGFG--KAIAIG  253 (1236)
T ss_dssp             -------------------------------CCEEEEEEEEEESSS--CEEEEE
T ss_pred             HHHHHHHHHh-----ccC--CCcEEEeeccCCCeEEEEEEEecCCc--eEEEEe
Confidence            8887643210     011  14799999999779999999999764  455554

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=98.82  E-value=1.2e-08  Score=101.17  Aligned_cols=102  Identities=12%  Similarity=0.031  Sum_probs=82.4

Q ss_pred             cCCCHHHHHHHH-HHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           28 LNIHEYQGAELM-AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        28 m~L~E~~aK~lL-~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      ..-+++..|++| +++|||+|++..+++++++.++++++|   +|+|+||...  +.|+         ||.++ |++|+.
T Consensus       109 ~~~dK~~~~~~l~~~~gip~p~~~~~~~~~~~~~~~~~~g---~P~vvKp~~g--~gg~---------Gv~~v~~~~el~  174 (391)
T 1kjq_A          109 LTMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADIG---YPCIVKPVMS--SSGK---------GQTFIRSAEQLA  174 (391)
T ss_dssp             HHHSHHHHHHHHHTTSCCCBCCEEEESSHHHHHHHHHHHC---SSEEEEESCC-----C---------CCEEECSGGGHH
T ss_pred             HhhCHHHHHHHHHHhCCCCCCCeeeeCCHHHHHHHHHhcC---CCEEEEeCCC--CCCC---------CeEEECCHHHHH
Confidence            345788899999 899999999999999999999999998   9999999753  3344         68888 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +++++++....        + .-..++||||++.+.|+.+.+..|..
T Consensus       175 ~~~~~~~~~~~--------~-~~~~~lvEe~i~~g~E~sv~~~~~~~  212 (391)
T 1kjq_A          175 QAWKYAQQGGR--------A-GAGRVIVEGVVKFDFEITLLTVSAVD  212 (391)
T ss_dssp             HHHHHHHHHSG--------G-GCCCEEEEECCCCSEEEEEEEEEETT
T ss_pred             HHHHHHHhhcc--------c-CCCCEEEEEecCCCeEEEEEEEEeCC
Confidence            99988764321        1 11479999999988999999888854

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=98.82  E-value=6.4e-10  Score=125.25  Aligned_cols=169  Identities=18%  Similarity=0.235  Sum_probs=108.7

Q ss_pred             CCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGL--AVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      -+++.+|++|+++|||+|++.  .+.+.+++.++++++|   ||+||||....|  |+         ||+++ |++|+.+
T Consensus       117 ~DK~~~r~ll~~aGIPvpp~~~~~v~s~eea~~~a~~iG---yPvVVKP~~GgG--g~---------Gv~vv~s~eeL~~  182 (1150)
T 3hbl_A          117 GDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAG---FPLMIKATSGGG--GK---------GMRIVREESELED  182 (1150)
T ss_dssp             HSHHHHHHHHHHTTCCBCCBCSSCBCSSSTTTTTGGGTC---SSEEEECCC------------------CEECCSSSCTH
T ss_pred             CCHHHHHHHHHHcCcCCCCccccCCCCHHHHHHHHHHcC---CCEEEEeCCCCC--CC---------CEEEECCHHHHHH
Confidence            578999999999999999998  7899999999999998   999999975333  44         68888 9999998


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecCC
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDV  186 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~p  186 (394)
                      +++++.....     ...|  -..++||||++..+|+.+.+..|...  .++.+. .....   +.+.+ .++.  ...|
T Consensus       183 a~~~a~~~a~-----~~fg--~~~vlVEeyI~G~reieV~vl~d~~G--~vv~l~-er~~s---~qr~~-~k~~--e~~P  246 (1150)
T 3hbl_A          183 AFHRAKSEAE-----KSFG--NSEVYIERYIDNPKHIEVQVIGDEHG--NIVHLF-ERDCS---VQRRH-QKVV--EVAP  246 (1150)
T ss_dssp             HHHSSSSSCC-------------CBEEECCCSSCEEEEEEEEECSSS--CEEEEE-EEEEE---EESSS-CEEE--EESS
T ss_pred             HHHHHHHHHH-----hhcC--CCcEEEEEccCCCcEEEEEEEEeCCC--CEEEEE-eeccc---eeccC-ceeE--EecC
Confidence            8887654321     0011  25799999999779999999999753  455443 11122   22233 2332  2344


Q ss_pred             CCCCCHH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHhhc-CCcceeeecceee
Q 016159          187 FNGITDE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLFCE-SDCTLLEINPLAE  238 (394)
Q Consensus       187 ~~gl~~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e-~d~~~lEINPLvv  238 (394)
                      ...+++.       .+.++++.+|+.+.-.          .+++.+ .+..++||||..-
T Consensus       247 a~~l~~~~~~~l~~~a~~~~~alG~~G~~~----------vEflvd~d~~y~iEINpR~~  296 (1150)
T 3hbl_A          247 SVGLSPTLRQRICDAAIQLMENIKYVNAGT----------VEFLVSGDEFFFIEVNPRVQ  296 (1150)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHTTCCEEEE----------EEEEEETTEEEEEEEECSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCCCceEE----------EEEEEECCeEEEEEEeCCCC
Confidence            4345653       3344556666654110          011222 2567899999875

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=98.81  E-value=1e-08  Score=102.00  Aligned_cols=102  Identities=18%  Similarity=0.238  Sum_probs=84.3

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCC-CCCCcccCCCcccEEEC-CHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGG-RGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~gg-RgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      ..-+++..|++|+++|||+|++..+.+.+++.++++++|   +|+||||..  ++ .|+         ||.++ |++++.
T Consensus       107 ~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~g---~P~vvKp~~--gg~~g~---------Gv~~v~~~~el~  172 (377)
T 3orq_A          107 LLQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLG---YPFIVKTRF--GGYDGK---------GQVLINNEKDLQ  172 (377)
T ss_dssp             HHHSHHHHHHHHHHTTCCBCCEEEECSSTHHHHHHHHTC---SSEEEEESS--SCCTTT---------TEEEECSTTSHH
T ss_pred             HhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHcC---CCEEEEeCC--CCCCCC---------CeEEECCHHHHH
Confidence            345788999999999999999999999999999999998   999999964  33 355         68888 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeee
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIG  160 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~  160 (394)
                      ++++.+..               ..++||||++...|+.+.+.+|...  .+..+
T Consensus       173 ~a~~~~~~---------------~~~ivEe~i~g~~E~sv~~~~~~~g--~~~~~  210 (377)
T 3orq_A          173 EGFKLIET---------------SECVAEKYLNIKKEVSLTVTRGNNN--QITFF  210 (377)
T ss_dssp             HHHHHHTT---------------SCEEEEECCCEEEEEEEEEEECGGG--CEEEC
T ss_pred             HHHHhcCC---------------CcEEEEccCCCCEEEEEEEEEeCCC--CEEEE
Confidence            98887631               4799999999669999999988653  34444

>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...

Probab=98.81  E-value=1.8e-08  Score=102.03  Aligned_cols=104  Identities=13%  Similarity=0.136  Sum_probs=83.1

Q ss_pred             CCCHHHHHHHHHHcCCCCCCce--eeCCHHHH-HHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHH
Q 016159           29 NIHEYQGAELMAKYGINVPKGL--AVASVDEV-KKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEV  104 (394)
Q Consensus        29 ~L~E~~aK~lL~~~GIpvp~~~--~~~s~eea-~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~  104 (394)
                      .-+++.+|++|+++|||+|++.  .+++++|+ .++++++|   +|+||||....|  |+         ||.++ |++|+
T Consensus       113 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~g---~PvvvKp~~g~g--g~---------Gv~~v~~~~el  178 (449)
T 2w70_A          113 MGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIG---YPVIIKASGGGG--GR---------GMRVVRGDAEL  178 (449)
T ss_dssp             HHSHHHHHHHHHHHTCCBCSBCSSCCCSCHHHHHHHHHHHC---SSEEEEETTCCT--TT---------TCEEECSHHHH
T ss_pred             hcCHHHHHHHHHHcCCCcCCCcccccCCHHHHHHHHHHHhC---CcEEEEECCCCC--CC---------CEEEeCCHHHH
Confidence            3578899999999999999997  88999999 99999998   999999976443  44         68888 99999


Q ss_pred             HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                      .+++++++.....  .   .|  -..++||||+++++|+.+.+..|...
T Consensus       179 ~~~~~~~~~~~~~--~---~~--~~~~lvEe~i~g~~e~~v~~~~~~~G  220 (449)
T 2w70_A          179 AQSISMTRAEAKA--A---FS--NDMVYMEKYLENPRHVEIQVLADGQG  220 (449)
T ss_dssp             HHHHHHHHHHHHH--H---HS--CCCEEEEECCSSCEEEEEEEEECTTS
T ss_pred             HHHHHHHHHHHHh--h---cC--CCcEEEEeccCCCeEEEEEEEEcCCC
Confidence            9998887643110  0   01  14799999999779999999998643

>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*

Probab=98.78  E-value=9.6e-09  Score=98.52  Aligned_cols=95  Identities=18%  Similarity=0.256  Sum_probs=76.3

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHH-HHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKK-AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~-~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      ...+++.+|++|+++|||+|++.++.+.+++.. ++++++   +|+|+||....+  |+         ||.++ |++++.
T Consensus        94 ~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~---~P~vvKP~~~~~--s~---------Gv~~v~~~~el~  159 (307)
T 3r5x_A           94 ICMDKNISKKILRYEGIETPDWIELTKMEDLNFDELDKLG---FPLVVKPNSGGS--SV---------GVKIVYDKDELI  159 (307)
T ss_dssp             HHHCHHHHHHHHHHTTCCCCCEEEEESSSCCCHHHHHHHC---SSEEEEECC------C---------CCEEECSHHHHH
T ss_pred             HHcCHHHHHHHHHHCCCCCCCEEEEeChhhhhHHHHHhcC---CCEEEEeCCCCC--CC---------CEEEeCCHHHHH
Confidence            446889999999999999999999988777654 777888   999999975433  33         68888 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD  150 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D  150 (394)
                      +++++++...             ..++||||++ +.|+.+.+..+
T Consensus       160 ~~~~~~~~~~-------------~~~lvee~i~-G~e~~v~v~~g  190 (307)
T 3r5x_A          160 SMLETVFEWD-------------SEVVIEKYIK-GEEITCSIFDG  190 (307)
T ss_dssp             HHHHHHHHHC-------------SEEEEEECCC-SEEEEEEEETT
T ss_pred             HHHHHHHhcC-------------CCEEEECCcC-CEEEEEEEECC
Confidence            9998875421             4899999999 79999999644

>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}

Probab=98.77  E-value=1.9e-08  Score=100.16  Aligned_cols=97  Identities=22%  Similarity=0.265  Sum_probs=79.3

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ..-+++..|++|+++|||+|++..+.+.+|+.++++++|   +|+|+||....|  |+         ||.++ |++|+.+
T Consensus       106 ~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~g---~P~vvKp~~g~g--g~---------Gv~~v~~~~el~~  171 (403)
T 4dim_A          106 MCGDKYKMKEAFKKYNVNTARHFVVRNENELKNALENLK---LPVIVKATDLQG--SK---------GIYIAKKEEEAID  171 (403)
T ss_dssp             HHHCHHHHHHHHHHHTCCCCCEECCCSHHHHHHHHHTSC---SSEEEECSCC----------------CEEESSHHHHHH
T ss_pred             HHhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHhcCC---CCEEEEECCCCC--CC---------CEEEECCHHHHHH
Confidence            345788999999999999999999999999999999998   999999975433  34         68888 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD  150 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D  150 (394)
                      +++++....        .+   ..++||||++ +.|+.+.+..+
T Consensus       172 ~~~~~~~~~--------~~---~~~lvEe~i~-g~e~sv~~~~~  203 (403)
T 4dim_A          172 GFNETMNLT--------KR---DYCIVEEFIE-GYEFGAQAFVY  203 (403)
T ss_dssp             HHHHHHHHC--------SS---SCCEEEECCC-SEEEEEEEEEE
T ss_pred             HHHHHHhcC--------cC---CcEEEEEccC-CcEEEEEEEEE
Confidence            999886542        11   4799999998 68999988864

>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*

Probab=98.75  E-value=3.7e-08  Score=97.28  Aligned_cols=95  Identities=13%  Similarity=0.162  Sum_probs=77.8

Q ss_pred             CCHHHHHHHHHHcCCCCCCceeeCCHH-------HHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CH
Q 016159           30 IHEYQGAELMAKYGINVPKGLAVASVD-------EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KK  101 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~~~s~e-------ea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~  101 (394)
                      .+++..|++|+++|||+|++..+++.+       ++.++++++|   +|+||||...  +.|+         ||.++ |+
T Consensus       128 ~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~~~~g---~PvvvKP~~g--~~s~---------Gv~~v~~~  193 (364)
T 2i87_A          128 MDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLN---YPVFVKPANL--GSSV---------GISKCNNE  193 (364)
T ss_dssp             HSHHHHHHHHHHHTCCCCCEEEEEHHHHHHHHHHHHHHHHHHCC---SSEEEEESSC--SSCT---------TCEEESSH
T ss_pred             cCHHHHHHHHHHCCCCCCCEEEEechhhcccchhHHHHHHHhcC---CCEEEEeCCC--CCCC---------CEEEECCH
Confidence            578889999999999999999998776       4667777888   9999999653  3344         68888 99


Q ss_pred             HHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          102 EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       102 ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +++.+++++.+..          +   ..++|||+++ ++|+.+.+..|+.
T Consensus       194 ~el~~a~~~~~~~----------~---~~~lvEe~I~-G~E~~v~vl~~~~  230 (364)
T 2i87_A          194 AELKEGIKEAFQF----------D---RKLVIEQGVN-AREIEVAVLGNDY  230 (364)
T ss_dssp             HHHHHHHHHHHTT----------C---SEEEEEECCC-CEEEEEEEEESSS
T ss_pred             HHHHHHHHHHHhc----------C---CeEEEEeCcc-CeEEEEEEEcCCC
Confidence            9999988876532          1   4899999999 7999999998763

>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}

Probab=98.71  E-value=7.1e-08  Score=97.01  Aligned_cols=102  Identities=14%  Similarity=0.081  Sum_probs=74.2

Q ss_pred             CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA  108 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~  108 (394)
                      -+++..|++|+++|||+|++..+++.+|+.+  .++|   ||+||||...  +-|+         ||.++ |++|+.+++
T Consensus       111 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~--~~~g---~P~vvKp~~g--~gs~---------Gv~~v~~~~el~~a~  174 (425)
T 3vot_A          111 RNKNKTRSILQQNGLNTPVFHEFHTLADLEN--RKLS---YPLVVKPVNG--FSSQ---------GVVRVDDRKELEEAV  174 (425)
T ss_dssp             HCHHHHHHHHHHTTCCCCCEEEESSGGGGTT--CCCC---SSEEEEESCC----------------CEEECSHHHHHHHH
T ss_pred             hCHHHHHHHHHHCCCCCCceeccCcHHHHHH--hhcC---CcEEEEECCC--CCCC---------CceEechHHHHHHHH
Confidence            5788999999999999999999999888753  4677   9999999653  3344         68899 999999999


Q ss_pred             HHHhccccc-ccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          109 GKMLGQILV-TKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       109 ~~~l~~~l~-~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                      +++...... ...   .+..-..++||||++ +.|+.+.+..+.
T Consensus       175 ~~~~~~~~~~~~~---~~~~~~~~lvEe~i~-G~e~sv~~~~~~  214 (425)
T 3vot_A          175 RKVEAVNQRDLNR---FVHGKTGIVAEQFID-GPEFAIETLSIQ  214 (425)
T ss_dssp             HHHHHHTTSSHHH---HHTTCCCEEEEECCC-SCEEEEEEEEET
T ss_pred             HHHHhhhhhhhhh---hccCCCcEEEEEEec-CcEEEEEEEEeC
Confidence            887532210 000   001125799999998 789998877663

>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}

Probab=98.68  E-value=2.5e-08  Score=99.32  Aligned_cols=96  Identities=16%  Similarity=0.153  Sum_probs=78.1

Q ss_pred             CCCHHHHHHHHHHcCCCCCCceeeCCHHH--HHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           29 NIHEYQGAELMAKYGINVPKGLAVASVDE--VKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~ee--a~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      ..+++..|++|+++|||+|++..+.+.++  +...++++|   +|+||||..  ++.++         ||.++ |++|+.
T Consensus       149 ~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~lg---~PvvVKP~~--ggss~---------GV~~v~~~~eL~  214 (373)
T 3lwb_A          149 GMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLG---LPVFVKPAR--GGSSI---------GVSRVSSWDQLP  214 (373)
T ss_dssp             HHBHHHHHHHHHHTTCCBCCEEEECTTCCCCCHHHHHHHC---SCEEEEESB--CSTTT---------TCEEECSGGGHH
T ss_pred             HcCHHHHHHHHHHcCcCCCCEEEEECcccchhHHHHHhcC---CCEEEEeCC--CCCCC---------CEEEeCCHHHHH
Confidence            35788999999999999999999988765  234477888   999999965  33344         68888 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +++++.+...             ..++|||+++ ++|+.+++..|+.
T Consensus       215 ~a~~~a~~~~-------------~~vlVEe~I~-G~E~~v~vl~~~~  247 (373)
T 3lwb_A          215 AAVARARRHD-------------PKVIVEAAIS-GRELECGVLEMPD  247 (373)
T ss_dssp             HHHHHHHTTC-------------SSEEEEECCE-EEEEEEEEEECTT
T ss_pred             HHHHHHHhcC-------------CCEEEeCCCC-CeEEEEEEEECCC
Confidence            9988875321             4799999999 8999999998864

>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*

Probab=98.66  E-value=7e-08  Score=91.94  Aligned_cols=93  Identities=19%  Similarity=0.218  Sum_probs=75.2

Q ss_pred             CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHH--------HHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-
Q 016159           29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKK--------AIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-   99 (394)
Q Consensus        29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~--------~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-   99 (394)
                      ..+++..|++|+++|||+|++..+++. ++.+        ++++++   +|+|+||....  .|+         ||.++ 
T Consensus        94 ~~dK~~~~~~l~~~gi~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~---~p~vvKP~~g~--~~~---------gv~~v~  158 (306)
T 1iow_A           94 SMDKLRSKLLWQGAGLPVAPWVALTRA-EFEKGLSDKQLAEISALG---LPVIVKPSREG--SSV---------GMSKVV  158 (306)
T ss_dssp             HHCHHHHHHHHHHTTCCBCCEEEEEHH-HHHHCCCTHHHHHHHTTC---SSEEEEETTCC--TTT---------TCEEES
T ss_pred             HcCHHHHHHHHHHCCCCCCCeEEEchh-hhhccchhhhhhHHhccC---CCEEEEeCCCC--CCC---------CEEEeC
Confidence            357889999999999999999999888 7766        677787   89999996533  343         68888 


Q ss_pred             CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe
Q 016159          100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD  150 (394)
Q Consensus       100 s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D  150 (394)
                      |++++.++++++...          +   ..++|||+++ +.|+.+.+..+
T Consensus       159 ~~~el~~~~~~~~~~----------~---~~~lvee~i~-g~e~~v~~~~g  195 (306)
T 1iow_A          159 AENALQDALRLAFQH----------D---EEVLIEKWLS-GPEFTVAILGE  195 (306)
T ss_dssp             SGGGHHHHHHHHTTT----------C---SEEEEEECCC-CCEEEEEEETT
T ss_pred             CHHHHHHHHHHHHhh----------C---CCEEEEeCcC-CEEEEEEEECC
Confidence            999999988876421          1   5899999999 89999998833

>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}

Probab=98.62  E-value=5.6e-08  Score=105.08  Aligned_cols=95  Identities=19%  Similarity=0.309  Sum_probs=75.9

Q ss_pred             CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHH-HHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-----CHHHH
Q 016159           31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAI-QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-----KKEEV  104 (394)
Q Consensus        31 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a-~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-----s~ee~  104 (394)
                      ++..+|++|+++|||+|++.++.+.+++.+++ +++|   +|+||||...  +.|+         ||.++     |.+++
T Consensus       489 DK~~tk~lL~~~GIPvP~~~~~~~~~ea~~~~~~~~g---~PvVVKP~~g--~~G~---------GV~iv~~~v~~~eel  554 (757)
T 3ln7_A          489 NKVVTKKVLQKAGFNVPQSVEFTSLEKAVASYALFEN---RAVVIKPKST--NYGL---------GITIFQQGVQNREDF  554 (757)
T ss_dssp             HSHHHHHHHHHHTCCCCCEEEESCHHHHHHGGGGSSS---SCEEEEESSC--STTT---------TCEECSSCCCCHHHH
T ss_pred             CHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcC---CCEEEEeCCC--CCCC---------CeEEecCCCCCHHHH
Confidence            56688999999999999999999999997776 6787   9999999763  3355         46553     88999


Q ss_pred             HHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          105 EDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       105 ~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                      .++++.++..          +   ..++||||++ ++|+.+.+..|+..
T Consensus       555 ~~al~~a~~~----------~---~~vlVEefI~-G~Ei~v~Vlggkvv  589 (757)
T 3ln7_A          555 AKALEIAFRE----------D---KEVMVEDYLV-GTEYRFFVLGDETL  589 (757)
T ss_dssp             HHHHHHHHHH----------C---SSEEEEECCC-SEEEEEEEETTEEE
T ss_pred             HHHHHHHHhc----------C---CcEEEEEcCC-CcEEEEEEECCEEE
Confidence            9888776532          1   4799999998 79999998866443

>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*

Probab=98.61  E-value=3e-08  Score=93.03  Aligned_cols=98  Identities=14%  Similarity=0.113  Sum_probs=71.0

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ...+++..+++|+++|||+|++..+.+.+++.+++++++   +|+|+||....+  |+         ||.++ +.+++.+
T Consensus        85 ~~~dK~~~~~~l~~~gi~~p~~~~~~~~~~~~~~~~~~~---~p~vvKp~~g~~--~~---------gv~~v~~~~el~~  150 (280)
T 1uc8_A           85 ACGDKWATSVALAKAGLPQPKTALATDREEALRLMEAFG---YPVVLKPVIGSW--GR---------LLAXXXXXXXXXX  150 (280)
T ss_dssp             HHHBHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHC---SSEEEECSBCCB--CS---------HHHHHHHHHC---
T ss_pred             HhCCHHHHHHHHHHcCcCCCCeEeeCCHHHHHHHHHHhC---CCEEEEECCCCC--cc---------cceecccccccch
Confidence            345788999999999999999999999999999999998   899999975332  33         67778 8888888


Q ss_pred             HHHHH--hcccccccccCCCCcccceEEEEeeeCC-CeeEEEEEEEe
Q 016159          107 LAGKM--LGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLD  150 (394)
Q Consensus       107 a~~~~--l~~~l~~~q~~~~g~~v~~vlVee~v~~-~~E~ylgi~~D  150 (394)
                      +++++  ++..           .-..++|||+++. +.|+.+.+..+
T Consensus       151 ~~~~~~~~~~~-----------~~~~~lvqe~i~~~~~e~~v~v~~~  186 (280)
T 1uc8_A          151 XXXXKEVLGGF-----------QHQLFYIQEYVEKPGRDIRVFVVGE  186 (280)
T ss_dssp             ---------CT-----------TTTCEEEEECCCCSSCCEEEEEETT
T ss_pred             hhhhHhhhccc-----------CCCcEEEEeccCCCCceEEEEEECC
Confidence            77665  2110           1157999999986 78888887643

>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*

Probab=98.58  E-value=5.6e-08  Score=95.18  Aligned_cols=93  Identities=17%  Similarity=0.139  Sum_probs=75.4

Q ss_pred             CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA  108 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~  108 (394)
                      .+++..|++|+++|||+|++..+++.+++..  ++++   +|+||||...  +.|+         ||.++ |++++.+++
T Consensus       131 ~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~--~~~~---~PvvvKP~~~--~~s~---------Gv~~v~~~~el~~a~  194 (343)
T 1e4e_A          131 MDKSLTYIVAKNAGIATPAFWVINKDDRPVA--ATFT---YPVFVKPARS--GSSF---------GVKKVNSADELDYAI  194 (343)
T ss_dssp             HSHHHHHHHHHHTTCBCCCEEEECTTCCCCG--GGSC---SCEEEEESSC--CTTT---------TCEEECSGGGHHHHH
T ss_pred             hCHHHHHHHHHHCCCCcCCEEEEechhhhhh--hccC---CCEEEEeCCC--CCCC---------CEEEeCCHHHHHHHH
Confidence            5788999999999999999999988776532  5677   9999999753  3343         68888 999999988


Q ss_pred             HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      ++.+..          +   ..++|||+++ ++|+.+.+..|+.
T Consensus       195 ~~~~~~----------~---~~~lvEe~I~-G~E~~v~vl~~~~  224 (343)
T 1e4e_A          195 ESARQY----------D---SKILIEQAVS-GCEVGCAVLGNSA  224 (343)
T ss_dssp             HHHTTT----------C---SSEEEEECCC-SEEEEEEEEEETT
T ss_pred             HHHHhc----------C---CcEEEEeCcC-CeEEEEEEEeCCC
Confidence            876432          1   4799999998 8999999998864

>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*

Probab=98.51  E-value=8.9e-08  Score=93.14  Aligned_cols=94  Identities=17%  Similarity=0.176  Sum_probs=74.2

Q ss_pred             CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159           29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL  107 (394)
Q Consensus        29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a  107 (394)
                      ..+++..|++|+++|||+|++..+.+.++.  +. ++|   +|+||||..  ++.|+         ||.++ |++++.++
T Consensus       116 ~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~--~~-~~g---~PvvvKP~~--g~~s~---------Gv~~v~~~~el~~a  178 (322)
T 2fb9_A          116 CMDKDLSKRVLAQAGVPVVPWVAVRKGEPP--VV-PFD---PPFFVKPAN--TGSSV---------GISRVERFQDLEAA  178 (322)
T ss_dssp             HHCHHHHHHHHHHTTCCCCCEEEEETTSCC--CC-CSC---SCEEEEETT--CCTTT---------TCEEESSHHHHHHH
T ss_pred             HcCHHHHHHHHHHCCCCCCCEEEEECchhh--hh-ccC---CCEEEEeCC--CCCCC---------CEEEECCHHHHHHH
Confidence            357889999999999999999999877642  22 566   899999965  33344         68888 99999998


Q ss_pred             HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +++.+..          +   ..++|||++++.+|+.+++..|+.
T Consensus       179 ~~~~~~~----------~---~~vlvEe~I~G~~E~~v~vl~~~~  210 (322)
T 2fb9_A          179 LALAFRY----------D---EKAVVEKALSPVRELEVGVLGNVF  210 (322)
T ss_dssp             HHHHTTT----------C---SEEEEEECCSSCEEEEEEEESSSS
T ss_pred             HHHHHhc----------C---CeEEEEeCCCCCeeEEEEEEeCCC
Confidence            8886532          1   489999999843999999998763

>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}

Probab=98.49  E-value=1.5e-07  Score=93.53  Aligned_cols=88  Identities=16%  Similarity=0.195  Sum_probs=69.6

Q ss_pred             CCCHHHHHHHHHHcCCCCCCceeeCCHH--HHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           29 NIHEYQGAELMAKYGINVPKGLAVASVD--EVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~e--ea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      ..+++..|++|+++|||+|++..+.+.+  ++.+ ++++|   +|+||||..  ++.|+         ||.++ |++|+.
T Consensus       147 ~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~-~~~lg---~PvvVKP~~--g~ss~---------Gv~~v~~~~el~  211 (367)
T 2pvp_A          147 SYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALD-LMNFN---FPFIVKPSN--AGSSL---------GVNVVKEEKELI  211 (367)
T ss_dssp             HHSHHHHHHHHHHHTCBCCCCEEECTTTGGGHHH-HCCSC---SCEEEEESS--CCTTT---------TCEEESSTTSHH
T ss_pred             HcCHHHHHHHHHHCCcCCCCEEEEeCCchHHHHH-HhccC---CCEEEEECC--CCCCC---------CEEEECCHHHHH
Confidence            3578899999999999999999998877  6666 67787   999999965  33344         67888 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEE
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY  144 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~y  144 (394)
                      +++++.+..          +   ..++|||++++.+|+.
T Consensus       212 ~a~~~~~~~----------~---~~vlVEe~I~G~~E~s  237 (367)
T 2pvp_A          212 YALDSAFEY----------S---KEVLIEPFIQGVKEYN  237 (367)
T ss_dssp             HHHHHHTTT----------C---SCEEEEECCTTCEEEE
T ss_pred             HHHHHHHhc----------C---CcEEEEeCCCCCceee
Confidence            988876531          1   4799999998439944

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=98.48  E-value=8.9e-08  Score=98.35  Aligned_cols=126  Identities=11%  Similarity=0.036  Sum_probs=92.7

Q ss_pred             cceeeccCCcEEEeeceeecCcchhccchhhhccCCCCCC-CHHhHhhhcCCC--eEEccCC-ceeEEecChhHHHHHHH
Q 016159          234 NPLAETSGKQLVAADAKLNFDDNAAFRQKEIFALRDPTQE-DPREVAAAKADL--NYIGLDG-EIGCMVNGAGLAMATMD  309 (394)
Q Consensus       234 NPLvv~~~G~~~alDaki~ldd~a~fR~~~~~~~~~~~~~-~~~e~~a~~~~l--~y~~l~G-~Ig~~~nGaGl~m~t~D  309 (394)
                      .|+++..-|+-           .+.|||.++.+.++.+++ +..+.++.....  ....+.| +|++++||||++.+++|
T Consensus       199 KPVV~~k~Grs-----------~~g~r~~Gvirv~~~~el~~~a~~l~~~~~~~~~qp~~~G~rvaivtn~Gg~gvlaaD  267 (480)
T 3dmy_A          199 KPTVALFLGYT-----------PAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAG  267 (480)
T ss_dssp             SCEEEEETTCC-----------CSSSEETTEEEESSHHHHHHHHHHHHHHHHHHHHHCCCSCCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEEeCCC-----------CcccccCCEEEECCHHHHHHHHHHHhcCccccccCCCCCCCeEEEEECCHHHHHHHHH
Confidence            47877666531           112899999888876665 555555541000  0012455 89999999999999999


Q ss_pred             HHHHcCCCc-----------------------------cceeecCCCCCHHHHHHHHHHHhcCCCccEEEE-Ec--cCCC
Q 016159          310 IIKLHGGTP-----------------------------ANFLDVGGNASEGQVVEAFKILTSDEKVKAILV-NI--FGGI  357 (394)
Q Consensus       310 ~i~~~gg~~-----------------------------aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~v-ni--~ggi  357 (394)
                      ++.. |+..                             .|++|+.   +++++.++++.++.||++++|++ .+  +++.
T Consensus       268 ~~~~-gl~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NPvD~~---d~~~~~~al~~~l~D~~vd~vlv~~v~~~~~~  343 (480)
T 3dmy_A          268 LLAG-HLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMI---DPTLRNQLIADLGAKPQVRVLLLDVVIGFGAT  343 (480)
T ss_dssp             HHHH-HTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTT---CCHHHHHHHHHGGGCTTEEEEEEEEECSTTSC
T ss_pred             HHHh-CCCCCCCCHHHHhhhhhhhhccHHHhCcchhhccCCcCCC---CHHHHHHHHHHHhcCCCCCEEEEEeecCCCCC
Confidence            9988 5532                             2566665   78999999999999999999887 33  7888


Q ss_pred             CCh-HHHHHHHHHHHHHc
Q 016159          358 MKC-DVIASGIVNAAKQV  374 (394)
Q Consensus       358 ~~~-d~vA~gii~a~~~~  374 (394)
                      +++ +.+|+.|+++.++.
T Consensus       344 ~d~~~~~a~ai~~~~~~~  361 (480)
T 3dmy_A          344 ADPAASLVSAWQKACAAR  361 (480)
T ss_dssp             SCHHHHHHHHHHHHHHTS
T ss_pred             CChHHHHHHHHHHHHHhc
Confidence            886 99999999998875

>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}

Probab=98.48  E-value=3.9e-07  Score=88.06  Aligned_cols=96  Identities=22%  Similarity=0.221  Sum_probs=59.0

Q ss_pred             CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHH--HHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAI--QDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a--~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      ..+++..|++|+++|||+|++..  +.+++.++.  ++++   +|+|+||....+  |+         ||.++ |++++.
T Consensus       112 ~~dK~~~~~~l~~~gip~p~~~~--~~~~~~~~~~~~~~~---~P~vvKp~~g~g--~~---------gv~~v~~~~el~  175 (331)
T 2pn1_A          112 CFDKYTMYEYCLRQGIAHARTYA--TMASFEEALAAGEVQ---LPVFVKPRNGSA--SI---------EVRRVETVEEVE  175 (331)
T ss_dssp             HHBHHHHHHHHHHHTCCCCCEES--SHHHHHHHHHTTSSC---SCEEEEESBC---------------------------
T ss_pred             hhCHHHHHHHHHHcCCCCCcEEe--cHHHhhhhhhcccCC---CCEEEEeCCCCC--CC---------CeEEeCCHHHHH
Confidence            35788999999999999999865  567776665  3676   899999975433  33         68888 888887


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEe-ccCCceeee
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLD-RKTAGPIII  159 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~D-r~~~~Pvi~  159 (394)
                      ++++.                 ...++||||++ +.|+.+.+..| .. |.++.+
T Consensus       176 ~~~~~-----------------~~~~lvee~i~-G~e~~v~~~~d~~~-G~~~~~  211 (331)
T 2pn1_A          176 QLFSK-----------------NTDLIVQELLV-GQELGVDAYVDLIS-GKVTSI  211 (331)
T ss_dssp             ------------------------CEEEEECCC-SEEEEEEEEECTTT-CCEEEE
T ss_pred             HHHHh-----------------CCCeEEEecCC-CcEEEEEEEEecCC-CeEEEE
Confidence            65432                 13799999999 69999999998 44 334433

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=98.45  E-value=2.1e-07  Score=92.08  Aligned_cols=91  Identities=21%  Similarity=0.315  Sum_probs=70.2

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      +..-+++..|++|+++|||+|++..+++.++   +++++|   +|+|+||.... ..|+         ||.++ |++++.
T Consensus        96 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~---~~~~~~---~P~vvKp~~~~-y~g~---------Gv~~v~~~~el~  159 (380)
T 3ax6_A           96 EIIQDKFVQKEFLKKNGIPVPEYKLVKDLES---DVREFG---FPVVQKARKGG-YDGR---------GVFIIKNEKDLE  159 (380)
T ss_dssp             HHHHSHHHHHHHHHHTTCCCCCEEECSSHHH---HHHTTC---SSEEEEESCCC---------------EEEECSGGGGG
T ss_pred             HHhcCHHHHHHHHHHcCCCCCCeEEeCCHHH---HHHhcC---CCEEEEecCCC-CCCC---------CeEEECCHHHHH
Confidence            3446788999999999999999999999887   566787   99999997533 0344         68888 887754


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      ++++                   ..++|||+++.+.|+.+.+..|..
T Consensus       160 ~~~~-------------------~~~lvEe~i~~g~e~sv~~~~~~~  187 (380)
T 3ax6_A          160 NAIK-------------------GETYLEEFVEIEKELAVMVARNEK  187 (380)
T ss_dssp             GCCC-------------------SSEEEEECCCEEEEEEEEEEECSS
T ss_pred             HHhc-------------------CCEEEEeccCCCeeEEEEEEECCC
Confidence            3211                   479999999878999999998865

>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*

Probab=98.20  E-value=3e-06  Score=84.09  Aligned_cols=86  Identities=19%  Similarity=0.209  Sum_probs=63.3

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ..-+....|++|+++|||+|++  +++++|+       +   +|+||||....+  ||         ||.++ |++|+.+
T Consensus       121 ~e~~k~~~k~~l~~~GIptp~~--~~~~~e~-------~---~PvVVK~~~~a~--Gk---------Gv~v~~s~ee~~~  177 (361)
T 2r7k_A          121 WESERSLEGKLLREAGLRVPKK--YESPEDI-------D---GTVIVKFPGARG--GR---------GYFIASSTEEFYK  177 (361)
T ss_dssp             TTTCHHHHHHHHHHTTCCCCCE--ESSGGGC-------C---SCEEEECSCCCC--------------EEEESSHHHHHH
T ss_pred             HhhhHHHHHHHHHHcCcCCCCE--eCCHHHc-------C---CCEEEeeCCCCC--CC---------CEEEECCHHHHHH
Confidence            3455667889999999999975  6777664       4   899999987654  55         69999 9999999


Q ss_pred             HHHHHhcccccccccCCCCcc-cceEEEEeeeCCCeeEE
Q 016159          107 LAGKMLGQILVTKQTGPQGKI-VSKVYLCEKLSLVNEMY  144 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~-v~~vlVee~v~~~~E~y  144 (394)
                      ++++++....       .|.. ...++||||++ +.|+.
T Consensus       178 a~~~~~~~~~-------~~~~~~~~viIEEfl~-G~e~s  208 (361)
T 2r7k_A          178 KAEDLKKRGI-------LTDEDIANAHIEEYVV-GTNFC  208 (361)
T ss_dssp             HHHHHHHTTS-------CCHHHHHHCEEEECCC-SEEEE
T ss_pred             HHHHHHhccc-------cccCCCCeEEEEeccc-eEEee
Confidence            9999875421       1211 14699999998 78875

>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*

Probab=98.05  E-value=1.4e-05  Score=76.88  Aligned_cols=91  Identities=21%  Similarity=0.238  Sum_probs=65.3

Q ss_pred             CCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159           29 NIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL  107 (394)
Q Consensus        29 ~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a  107 (394)
                      ..+++..|++|+++|||+|++  +.++++       ++   +|+||||....+  |+         ||.++ |++++.++
T Consensus        98 ~~dK~~~~~~l~~~gip~p~~--~~~~~~-------l~---~P~vvKP~~g~~--s~---------Gv~~v~~~~el~~~  154 (334)
T 2r85_A           98 ESDRNLERKWLKKAGIRVPEV--YEDPDD-------IE---KPVIVKPHGAKG--GK---------GYFLAKDPEDFWRK  154 (334)
T ss_dssp             HHSHHHHHHHHHHTTCCCCCB--CSCGGG-------CC---SCEEEEECC------T---------TCEEESSHHHHHHH
T ss_pred             HHhHHHHHHHHHHcCCCCCCc--cCChHH-------cC---CCEEEEeCCCCC--CC---------CEEEECCHHHHHHH
Confidence            356788899999999999998  566553       55   899999975333  44         68888 99999998


Q ss_pred             HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                      ++++.....       .+ ....++||||++ +.|+.+.+..+.
T Consensus       155 ~~~~~~~~~-------~~-~~~~~lvee~i~-G~e~~~~~~~~~  189 (334)
T 2r85_A          155 AEKFLGIKR-------KE-DLKNIQIQEYVL-GVPVYPHYFYSK  189 (334)
T ss_dssp             HHHHHCCCS-------GG-GCCSEEEEECCC-CEEEEEEEEEET
T ss_pred             HHHHHhhcc-------cC-CCCcEEEEeccC-CceeEEEEeecC
Confidence            888764310       00 114799999998 788876655553

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=97.98  E-value=8.3e-06  Score=79.99  Aligned_cols=78  Identities=12%  Similarity=0.232  Sum_probs=55.4

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ..-+++..|++|+++|||+|++..             +|   ||+|+||...  +-|+         ||+++ |.+++..
T Consensus       100 ~~~dK~~~k~~l~~~gip~~~~~~-------------ig---~P~vvKp~~g--~g~~---------gv~~v~~~~~~~~  152 (363)
T 4ffl_A          100 ISRDKKKSKDYFKSIGVPTPQDRP-------------SK---PPYFVKPPCE--SSSV---------GARIIYDDKDLEG  152 (363)
T ss_dssp             HHTSHHHHHHHHHHTTCCCCCBSC-------------SS---SCEEEECSSC--CTTT---------TCEEEC------C
T ss_pred             HhhCHHHHHHHHHhcCCCCCCcee-------------cC---CCEEEEECCC--CCCc---------CeEEeccHHHhhh
Confidence            345889999999999999998753             56   9999999643  2233         67787 7766421


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                                          ....+++|||++ +.|+.+.+..|...
T Consensus       153 --------------------~~~~~~~ee~i~-g~e~sv~~~~d~~~  178 (363)
T 4ffl_A          153 --------------------LEPDTLVEEYVE-GEVVSLEVVGDGSH  178 (363)
T ss_dssp             --------------------CCTTCEEEECCC-SEEEEEEEEEESSC
T ss_pred             --------------------hccchhhhhhcc-CcEEEEEEEEECCe
Confidence                                014678999998 88999999998653

>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*

Probab=97.91  E-value=1.7e-05  Score=76.33  Aligned_cols=94  Identities=18%  Similarity=0.172  Sum_probs=68.9

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ...+++..+++|+++|||+|++.++.+.+++.+++++.+ ..+|+|+||..-.|+.+        .-||.++ +.+++.+
T Consensus        95 ~~~dK~~~~~~l~~~gi~~P~~~~~~~~~~~~~~~~~~~-~~~P~vvKP~~g~g~~~--------s~gv~~v~~~~~l~~  165 (324)
T 1z2n_X           95 MMSSREEINALLIKNNIPIPNSFSVKSKEEVIQLLQSKQ-LILPFIVKPENAQGTFN--------AHQMKIVLEQEGIDD  165 (324)
T ss_dssp             HHTBHHHHHHHHHHTTCCCSCEEEESSHHHHHHHHHTTC-SCSSEEEEESBCSSSSG--------GGEEEEECSGGGGTT
T ss_pred             HHhCHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHHcC-CCCCEEEeeCCCCCCcc--------ceeeEEEeCHHHHhh
Confidence            446788899999999999999999999999988887743 12899999976333211        1368888 7665321


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCC-CeeEEEEEEEe
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLD  150 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~-~~E~ylgi~~D  150 (394)
                              .         .   ..++||||++. +.|+.+.+..+
T Consensus       166 --------~---------~---~~~lvqe~i~~~g~~~~v~v~g~  190 (324)
T 1z2n_X          166 --------I---------H---FPCLCQHYINHNNKIVKVFCIGN  190 (324)
T ss_dssp             --------C---------C---SSEEEEECCCCTTCEEEEEEETT
T ss_pred             --------c---------C---CCEEEEEccCCCCcEEEEEEECC
Confidence                    0         1   47999999975 67888877543

>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*

Probab=97.36  E-value=0.00022  Score=69.25  Aligned_cols=89  Identities=12%  Similarity=0.031  Sum_probs=62.9

Q ss_pred             HHHHHHHHHcCC---CCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159           33 YQGAELMAKYGI---NVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA  108 (394)
Q Consensus        33 ~~aK~lL~~~GI---pvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~  108 (394)
                      .....+|++.|+   |.|+.....+..+   +.+.+|   +|+|+|+-.  |+.|+         ||.++ |++++++..
T Consensus       119 ~~~~~~l~~~gi~~~P~~~~~~~~~~~~---~~~~~g---~PvVvK~~~--Gs~G~---------GV~lv~~~~~~~~~~  181 (309)
T 1i7n_A          119 AQMVAIFKTLGGEKFPLIEQTYYPNHRE---MLTLPT---FPVVVKIGH--AHSGM---------GKVKVENHYDFQDIA  181 (309)
T ss_dssp             HHHHHHHHHHCTTTSCBCCCEEESSGGG---GSSCCC---SSEEEEESS--CSTTT---------TEEEECSHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCCCCEEeeCChhh---hhhccC---CCEEEEeCC--CCcee---------CeEEECCHHHHHHHH
Confidence            455677888998   8656555555443   344566   899999953  55565         68888 999988777


Q ss_pred             HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                      +.+....             ..+++|||++.++.+.+.+.-++
T Consensus       182 ~~~~~~~-------------~~~~vQefI~~g~DiRv~VvGg~  211 (309)
T 1i7n_A          182 SVVALTQ-------------TYATAEPFIDAKYDIRVQKIGNN  211 (309)
T ss_dssp             HHHHHHT-------------CCEEEEECCCEEEEEEEEEETTE
T ss_pred             HHHhccC-------------CeEEEEeecCCCceEEEEEECCE
Confidence            6543211             46889999997888888887554

>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}

Probab=97.13  E-value=0.00039  Score=68.41  Aligned_cols=94  Identities=10%  Similarity=0.023  Sum_probs=64.7

Q ss_pred             cCCCH----HHHHHHHHHcCC---CCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-
Q 016159           28 LNIHE----YQGAELMAKYGI---NVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-   99 (394)
Q Consensus        28 m~L~E----~~aK~lL~~~GI---pvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-   99 (394)
                      ..-++    .....+|++.|+   |.|+.....+..+   +.+.+|   +|+|+|+-.  |+.|+         ||.++ 
T Consensus       127 ~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~~~~~~~---~~~~~g---~PvVvK~~~--Gs~G~---------GV~lve  189 (344)
T 2p0a_A          127 NFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKP---MVTAPH---FPVVVKLGH--AHAGM---------GKIKVE  189 (344)
T ss_dssp             HTTCHHHHHHHHHHHHHHHCTTTSCBCCCEEESSSTT---CCCCSS---SSEEEEESS--CCTTT---------TEEEEC
T ss_pred             hhCCchHHHHHHHHHHHHCCCCCCCCCCEEecCchhh---hhhccC---CCEEEEeCC--CCcee---------CeEEEC
Confidence            33566    556778888898   8655554554433   344566   899999954  55565         68888 


Q ss_pred             CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          100 KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       100 s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                      |.+++++..+.+...          +   ..+++|||++.++.+.+.+.-++
T Consensus       190 ~~~~~~~~~~~~~~~----------~---~~~~vQefI~~g~DiRv~VVGg~  228 (344)
T 2p0a_A          190 NQLDFQDITSVVAMA----------K---TYATTEAFIDSKYDIRIQKIGSN  228 (344)
T ss_dssp             SHHHHHHHHHHHHHH----------T---CCEEEEECCCEEEEEEEEEETTE
T ss_pred             CHHHHHHHHHHHhcc----------C---CeEEEEeccCCCccEEEEEECCE
Confidence            999988777654321          1   36889999997888888887554

>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A

Probab=97.09  E-value=0.00047  Score=65.20  Aligned_cols=88  Identities=13%  Similarity=0.113  Sum_probs=62.6

Q ss_pred             CCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC--CHHHHHHH
Q 016159           30 IHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV--KKEEVEDL  107 (394)
Q Consensus        30 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~--s~ee~~~a  107 (394)
                      .+++..+++|+    |+|++.++.+++++.++++++|    |+|+||..  |+.|+         ||.+.  +.+++.++
T Consensus       123 ~dK~~~~~~l~----~~P~t~~~~~~~~~~~~~~~~~----p~vvKP~~--g~~g~---------Gv~~v~~~~~~l~~~  183 (316)
T 1gsa_A          123 NEKLFTAWFSD----LTPETLVTRNKAQLKAFWEKHS----DIILKPLD--GMGGA---------SIFRVKEGDPNLGVI  183 (316)
T ss_dssp             CTTGGGGGGTT----TSCCEEEESCHHHHHHHHHHHS----SEEEECSS--CCTTT---------TCEEECTTCTTHHHH
T ss_pred             hhHHHHHhhhh----cCCCeEEeCCHHHHHHHHHHcC----CEEEEECC--CCCcc---------cEEEecCChHHHHHH
Confidence            45555666666    9999999999999999888884    99999965  33344         45554  67777776


Q ss_pred             HHHHhcccccccccCCCCcccceEEEEeeeCC--CeeEEEEEE
Q 016159          108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL--VNEMYFAIM  148 (394)
Q Consensus       108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~--~~E~ylgi~  148 (394)
                      ++.+...          +  -..++|||+++.  +.|+.+.+.
T Consensus       184 ~~~~~~~----------~--~~~~lvqe~i~~~~~~~~~v~~~  214 (316)
T 1gsa_A          184 AETLTEH----------G--TRYCMAQNYLPAIKDGDKRVLVV  214 (316)
T ss_dssp             HHHHTTT----------T--TSCEEEEECCGGGGGCEEEEEEE
T ss_pred             HHHHHhc----------C--CceEEEecccCCCCCCCEEEEEE
Confidence            6654211          1  147999999986  577766654

>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X

Probab=97.01  E-value=0.00045  Score=68.00  Aligned_cols=90  Identities=13%  Similarity=0.184  Sum_probs=64.3

Q ss_pred             CCHHHHHHHHHHc-------CCCCCCceeeCC--HHHHHHHHH--HhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEE
Q 016159           30 IHEYQGAELMAKY-------GINVPKGLAVAS--VDEVKKAIQ--DAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHI   98 (394)
Q Consensus        30 L~E~~aK~lL~~~-------GIpvp~~~~~~s--~eea~~~a~--~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l   98 (394)
                      .+....-++|++.       |||+|++.++.+  ++++.+..+  .+|   +|+|+||..-.|..+         -||.+
T Consensus       115 ~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg---~P~VvKP~~g~Gs~s---------~~v~~  182 (346)
T 2q7d_A          115 LDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLT---FPFICKTRVAHGTNS---------HEMAI  182 (346)
T ss_dssp             TBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCC---SSEEEECSBCSSTTC---------CEEEE
T ss_pred             hhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCC---CCEEEEecCCCccee---------eeeEE
Confidence            4677777788886       999999999976  356666654  355   899999965333322         36888


Q ss_pred             C-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCC-CeeEEEEEEEec
Q 016159           99 V-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSL-VNEMYFAIMLDR  151 (394)
Q Consensus        99 ~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~-~~E~ylgi~~Dr  151 (394)
                      + +.+++..         +        +   ..++||||+++ +.|+-+.+.-|+
T Consensus       183 v~~~~~l~~---------~--------~---~~~lvQefI~~~G~dirv~VvG~~  217 (346)
T 2q7d_A          183 VFNQEGLNA---------I--------Q---PPCVVQNFINHNAVLYKVFVVGES  217 (346)
T ss_dssp             ECSGGGTTC----------------------CCEEEEECCCCTTEEEEEEEETTE
T ss_pred             ecCHHHHHh---------c--------C---CCEEEEEeeCCCCeEEEEEEECCE
Confidence            8 8766542         1        1   36999999974 789999887654

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*

Probab=96.92  E-value=0.00087  Score=67.49  Aligned_cols=89  Identities=15%  Similarity=0.083  Sum_probs=61.6

Q ss_pred             HHHHHHHHHcCC---CCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159           33 YQGAELMAKYGI---NVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA  108 (394)
Q Consensus        33 ~~aK~lL~~~GI---pvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~  108 (394)
                      ...-.+|++.|+   |.++.....+..+   +.+.+|   +|+|+|+-.  |+.|+         ||.++ |.+++++..
T Consensus       231 ~~~l~ll~~~gi~~iP~t~~t~~~~~~~---~i~~~g---~PvVvKp~~--GS~G~---------GV~lve~~~~l~~ii  293 (422)
T 1pk8_A          231 AQMVRLHKKLGTEEFPLIDQTFYPNHKE---MLSSTT---YPVVVKMGH--AHSGM---------GKVKVDNQHDFQDIA  293 (422)
T ss_dssp             HHHHHHHHHHCTTTSCBCCCEEESSGGG---CCCCSS---SSEEEEESS--CCTTT---------TEEEECSHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCCCceEecCchhh---hhhccC---CCEEEEeCC--CCcee---------CeEEeCCHHHHHHHH
Confidence            345667888888   8555544444333   334566   899999953  55565         68888 999988877


Q ss_pred             HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                      +.+....             .-+++|||++.++.+.+.+.-++
T Consensus       294 ~~~~~~~-------------~~~~vQEfI~~g~DIRv~VVGg~  323 (422)
T 1pk8_A          294 SVVALTK-------------TYATAEPFIDAKYDVRVQKIGQN  323 (422)
T ss_dssp             HHHHHHT-------------SCEEEEECCCEEEEEEEEEETTE
T ss_pred             HHHhccC-------------ceEEEEeecCCCceEEEEEECCE
Confidence            6543221             46899999997888888887554

>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}

Probab=96.87  E-value=0.00099  Score=64.04  Aligned_cols=72  Identities=8%  Similarity=0.135  Sum_probs=53.6

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      +..-+++..|++|++ |||+|++.+           .+++   +|+|+||..  |+.|+         ||.++ +     
T Consensus       106 ~~~~dK~~~~~~l~~-Gip~p~~~~-----------~~~~---~P~vvKP~~--g~gs~---------Gv~~v~~-----  154 (305)
T 3df7_A          106 AVTSDKWELYKKLRG-EVQVPQTSL-----------RPLD---CKFIIKPRT--ACAGE---------GIGFSDE-----  154 (305)
T ss_dssp             HHHTSHHHHHHHHTT-TSCCCCEES-----------SCCS---SSEEEEESS--CC-------------CBCCSS-----
T ss_pred             HHhcCHHHHHHHHHh-CCCCCCEec-----------ccCC---CCEEEEeCC--CCCCC---------CEEEEec-----
Confidence            344688999999999 999999986           2466   899999965  33333         56666 5     


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                               .         .   ..++||||++ +.|+.+.+..+.
T Consensus       155 ---------~---------~---~~~lvEe~I~-G~e~sv~v~~g~  178 (305)
T 3df7_A          155 ---------V---------P---DGHIAQEFIE-GINLSVSLAVGE  178 (305)
T ss_dssp             ---------C---------C---TTEEEEECCC-SEEEEEEEEESS
T ss_pred             ---------C---------C---CCEEEEeccC-CcEEEEEEEeCC
Confidence                     1         1   4799999999 899999998753

>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9

Probab=96.81  E-value=0.00014  Score=70.96  Aligned_cols=81  Identities=12%  Similarity=0.077  Sum_probs=47.5

Q ss_pred             HHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHH
Q 016159           33 YQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKM  111 (394)
Q Consensus        33 ~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~  111 (394)
                      ..-|++|+++|||+|++.-   ++|+     +++   +|+||||....  .||         |+.++ | +|+.++++.+
T Consensus       100 ~~~~~~l~~~Gip~P~~~~---~ee~-----~i~---~PviVKp~~g~--ggk---------G~~~v~~-eel~~~~~~~  156 (320)
T 2pbz_A          100 ELQDKALEGAGIPRVEVVE---PEDA-----KPD---ELYFVRIEGPR--GGS---------GHFIVEG-SELEERLSTL  156 (320)
T ss_dssp             HHHHHHHHHHTCCBCCBCC---SCCC-----CSS---CCEEEECC-----------------------C-EECSCCCC--
T ss_pred             HHHHHHHHHCCcCCCCeeC---HhHc-----CcC---CcEEEEECCCC--CCC---------CEEEECh-HHHHHHHHhc
Confidence            4446899999999999872   4443     467   99999996533  355         67788 8 7765432221


Q ss_pred             hcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          112 LGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       112 l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                                   +   ..++||||++ +.|++..+..+...
T Consensus       157 -------------~---~~~IiEEfI~-g~~~~~~~f~~~~~  181 (320)
T 2pbz_A          157 -------------E---EPYRVERFIP-GVYLYVHFFYSPIL  181 (320)
T ss_dssp             ------------------CCEEEECCC-SCEEEEEEEEETTT
T ss_pred             -------------C---CCEEEEeeec-eEecceeEEecccc
Confidence                         1   3689999998 67776445555443

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=92.89  E-value=0.5  Score=48.28  Aligned_cols=81  Identities=22%  Similarity=0.291  Sum_probs=69.5

Q ss_pred             CCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCC-----CHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHH
Q 016159          291 DGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNA-----SEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIAS  365 (394)
Q Consensus       291 ~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a-----~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~  365 (394)
                      +|+||+++--|+++...+|.+...|.-...|+-+|+.+     ..-.+...++.+..||++++|++.+=+   ..+.+++
T Consensus       112 ~G~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~---~~e~~~~  188 (480)
T 3dmy_A          112 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKP---PAEAVRL  188 (480)
T ss_dssp             EEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESC---CCHHHHH
T ss_pred             CCCEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEec---CCcHHHH
Confidence            69999999999999999999999999899999999994     557788899999999999999976654   2456777


Q ss_pred             HHHHHHHHc
Q 016159          366 GIVNAAKQV  374 (394)
Q Consensus       366 gii~a~~~~  374 (394)
                      .++++.++.
T Consensus       189 ~f~~~ar~~  197 (480)
T 3dmy_A          189 KIVNAMKAT  197 (480)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            788887753

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*

Probab=92.65  E-value=0.36  Score=47.06  Aligned_cols=84  Identities=17%  Similarity=0.196  Sum_probs=67.4

Q ss_pred             ccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCC--CCHHHHHHHHHHHhcCCCccEEEEE-ccCCCCChHHHHH
Q 016159          289 GLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGN--ASEGQVVEAFKILTSDEKVKAILVN-IFGGIMKCDVIAS  365 (394)
Q Consensus       289 ~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~--a~~~~~~~a~~~~l~~~~v~~i~vn-i~ggi~~~d~vA~  365 (394)
                      ..+|+||+++--|+++...+|.+...|.-..-|+-+||+  ++ -.+...++.+..||++++|++. =.+|+..     +
T Consensus       166 ~~~G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d-~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e-----~  239 (334)
T 3mwd_B          166 YRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPG-STFMDHVLRYQDTPGVKMIVVLGEIGGTEE-----Y  239 (334)
T ss_dssp             TSCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCS-SCHHHHHHHHHTCTTCCEEEEEEESSSSHH-----H
T ss_pred             CCCCCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCC-CCHHHHHHHHhcCCCCCEEEEEEecCChHH-----H
Confidence            356999999999999999999999999888899999999  55 5577899999999999999975 1355532     4


Q ss_pred             HHHHHHHHcCCcc
Q 016159          366 GIVNAAKQVSALD  378 (394)
Q Consensus       366 gii~a~~~~~~~~  378 (394)
                      ..++++++...++
T Consensus       240 ~~~~~~r~~~~~K  252 (334)
T 3mwd_B          240 KICRGIKEGRLTK  252 (334)
T ss_dssp             HHHHHHHTTSCCS
T ss_pred             HHHHHHHhhcCCC
Confidence            5667777744333

>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}

Probab=90.45  E-value=1.1  Score=42.28  Aligned_cols=89  Identities=19%  Similarity=0.213  Sum_probs=62.9

Q ss_pred             CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHH
Q 016159          292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA  364 (394)
Q Consensus       292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA  364 (394)
                      ++|+++..-.+..      -...+.+..+|.++-.-.-..++.+.+.-+++++-++ +.|++++||       ...|.+|
T Consensus       182 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~nd~~A  254 (338)
T 3dbi_A          182 QEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV-------ASNDDMA  254 (338)
T ss_dssp             CSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEE-------ESSHHHH
T ss_pred             CEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-------ECChHHH
Confidence            4888886543322      2356778888765543333456677777777776665 578999999       4558999


Q ss_pred             HHHHHHHHHcCCcc-----eEEeecceE
Q 016159          365 SGIVNAAKQVSALD-----CFGFHSNYF  387 (394)
Q Consensus       365 ~gii~a~~~~~~~~-----~~~~~~~~~  387 (394)
                      -|+++++++.++++     +.+|-++.+
T Consensus       255 ~g~~~al~~~G~~vP~di~vvg~D~~~~  282 (338)
T 3dbi_A          255 IGAMKALHERGVAVPEQVSVIGFDDIAI  282 (338)
T ss_dssp             HHHHHHHHHTTCCTTTTCEEEEESCCTT
T ss_pred             HHHHHHHHHcCCCCCCCeEEEEECChHH
Confidence            99999999999874     777766544

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=90.20  E-value=0.81  Score=43.83  Aligned_cols=83  Identities=14%  Similarity=0.206  Sum_probs=67.2

Q ss_pred             cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHH
Q 016159          290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV  368 (394)
Q Consensus       290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii  368 (394)
                      .+|+||+++--|+++...+|.+...|.-..-|+-+||++. .-.+...++.+..||++++|++.+=++ -+..+-++..+
T Consensus       151 ~~G~va~vSqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~-g~~e~~~~~f~  229 (305)
T 2fp4_A          151 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIG-GNAEENAAEFL  229 (305)
T ss_dssp             CEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESS-SSHHHHHHHHH
T ss_pred             CCCCEEEEecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecC-CchhhHHHHHH
Confidence            4699999999999999999999999988999999999984 467888999999999999999755433 23334456666


Q ss_pred             HHHHH
Q 016159          369 NAAKQ  373 (394)
Q Consensus       369 ~a~~~  373 (394)
                      ++.++
T Consensus       230 ~~~~~  234 (305)
T 2fp4_A          230 KQHNS  234 (305)
T ss_dssp             HHHSC
T ss_pred             HHHHH
Confidence            66554

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=90.13  E-value=0.56  Score=44.53  Aligned_cols=80  Identities=14%  Similarity=0.199  Sum_probs=65.0

Q ss_pred             cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHH
Q 016159          290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV  368 (394)
Q Consensus       290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii  368 (394)
                      .+|+||+++--|+++...+|.+...|.-..-|+-+|+++. .-.+...++.+..||++++|++.+=++ .+....+...+
T Consensus       143 ~~G~va~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~-~~~~~~~~~~~  221 (288)
T 1oi7_A          143 KRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIG-GSDEEEAAAWV  221 (288)
T ss_dssp             CEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSS-SSHHHHHHHHH
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeC-CCHHHHHHHHH
Confidence            4599999999999999999999999988999999999995 356788999999999999999765443 33444444444


Q ss_pred             HH
Q 016159          369 NA  370 (394)
Q Consensus       369 ~a  370 (394)
                      ++
T Consensus       222 ~~  223 (288)
T 1oi7_A          222 KD  223 (288)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=89.59  E-value=0.74  Score=43.87  Aligned_cols=79  Identities=14%  Similarity=0.202  Sum_probs=64.2

Q ss_pred             cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHH
Q 016159          290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV  368 (394)
Q Consensus       290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii  368 (394)
                      .+|+||+++--|+++...+|.+...|.-..-|+-+|+++. .-.+...++.+..||++++|++.+=+ +.+....+...+
T Consensus       150 ~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~-~~~~~~~~~~~~  228 (297)
T 2yv2_A          150 KEGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEI-GGDMEERAAEMI  228 (297)
T ss_dssp             CEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECS-SSSHHHHHHHHH
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEee-CCCHHHHHHHHH
Confidence            4699999999999999999999999988899999999995 25678899999999999999986553 234444444444


Q ss_pred             H
Q 016159          369 N  369 (394)
Q Consensus       369 ~  369 (394)
                      +
T Consensus       229 ~  229 (297)
T 2yv2_A          229 K  229 (297)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=89.02  E-value=0.7  Score=44.00  Aligned_cols=66  Identities=18%  Similarity=0.251  Sum_probs=58.6

Q ss_pred             cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEccC
Q 016159          290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFG  355 (394)
Q Consensus       290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~vni~g  355 (394)
                      .+|+||+++--|+++...+|.+...|.-..-|+-+|+++. .-.+...++.+..||++++|++.+=+
T Consensus       149 ~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~  215 (294)
T 2yv1_A          149 KEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEI  215 (294)
T ss_dssp             CEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEES
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEee
Confidence            4599999999999999999999999988999999999995 25677899999999999999975544

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=88.94  E-value=1.4  Score=41.62  Aligned_cols=80  Identities=14%  Similarity=0.234  Sum_probs=64.9

Q ss_pred             cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHH
Q 016159          290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV  368 (394)
Q Consensus       290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii  368 (394)
                      .+|+||+++--|+++...+|.+...|.-..-++-+||++. .-.+...++.+..||++++|++.+=++ -+....++..+
T Consensus       143 ~~G~i~~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~-~~~~~~~~~~~  221 (288)
T 2nu8_A          143 KPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIG-GSAEEEAAAYI  221 (288)
T ss_dssp             CEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESS-SSHHHHHHHHH
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeC-CCHHHHHHHHH
Confidence            4699999999999999999999999988889999999985 356778999999999999999755433 34445555556


Q ss_pred             HH
Q 016159          369 NA  370 (394)
Q Consensus       369 ~a  370 (394)
                      ++
T Consensus       222 ~~  223 (288)
T 2nu8_A          222 KE  223 (288)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}

Probab=87.80  E-value=1.4  Score=40.60  Aligned_cols=90  Identities=13%  Similarity=0.127  Sum_probs=60.4

Q ss_pred             CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHH
Q 016159          292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA  364 (394)
Q Consensus       292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA  364 (394)
                      .+|+++..-.+..      -...+++..+|..+..-.-.-++.+.+.-+++++-++ +.|++++||       ...|.+|
T Consensus       127 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~nd~~A  199 (294)
T 3qk7_A          127 QRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAII-------TDCNMLG  199 (294)
T ss_dssp             CCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEE-------ESSHHHH
T ss_pred             ceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEE-------ECCHHHH
Confidence            3888886544322      2245677777765432222335566777666666555 468999999       4568999


Q ss_pred             HHHHHHHHHcCCcc-----eEEeecceEE
Q 016159          365 SGIVNAAKQVSALD-----CFGFHSNYFC  388 (394)
Q Consensus       365 ~gii~a~~~~~~~~-----~~~~~~~~~~  388 (394)
                      -|+++++++.++++     +.+|-++.++
T Consensus       200 ~g~~~al~~~G~~vP~di~vig~D~~~~~  228 (294)
T 3qk7_A          200 DGVASALDKAGLLGGEGISLIAYDGLPDD  228 (294)
T ss_dssp             HHHHHHHHHTTCSSTTSCEEEEETCSCTT
T ss_pred             HHHHHHHHHcCCCCCCceEEEeecCccHH
Confidence            99999999999874     7777766543

>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}

Probab=87.38  E-value=4.4  Score=36.39  Aligned_cols=88  Identities=15%  Similarity=0.107  Sum_probs=58.4

Q ss_pred             CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHH
Q 016159          292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA  364 (394)
Q Consensus       292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA  364 (394)
                      .+|+++..-.+..      -...+.+..+|.++....-.-++.+.+..+++++-+++ .|++++||       ...|.+|
T Consensus       121 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a  193 (275)
T 3d8u_A          121 KNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALV-------CSHEEIA  193 (275)
T ss_dssp             CCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEE-------ESSHHHH
T ss_pred             CeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEE-------EcCcHHH
Confidence            4888886543322      12457777787654332223455677777776665554 57899998       3468899


Q ss_pred             HHHHHHHHHcCCcc-----eEEeecce
Q 016159          365 SGIVNAAKQVSALD-----CFGFHSNY  386 (394)
Q Consensus       365 ~gii~a~~~~~~~~-----~~~~~~~~  386 (394)
                      .|+++++++.+.++     +.+|-++.
T Consensus       194 ~g~~~al~~~g~~vP~di~vvg~d~~~  220 (275)
T 3d8u_A          194 IGALFECHRRVLKVPTDIAIICLEGSS  220 (275)
T ss_dssp             HHHHHHHHHTTCCTTTTCEEEESSCCH
T ss_pred             HHHHHHHHHcCCCCCCceEEEecCCch
Confidence            99999999998763     67776553

>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...

Probab=87.33  E-value=2.5  Score=39.76  Aligned_cols=89  Identities=17%  Similarity=0.132  Sum_probs=59.4

Q ss_pred             CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHH
Q 016159          292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA  364 (394)
Q Consensus       292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA  364 (394)
                      .+|+++..-.+..      -...+++..+|.....-.-.-|+-+.+.-+++++-+++ .|++++||       ...|.+|
T Consensus       178 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~nd~~A  250 (340)
T 1qpz_A          178 REIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVF-------CGGDIMA  250 (340)
T ss_dssp             CCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEE-------ESSHHHH
T ss_pred             CEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEE-------ECCHHHH
Confidence            4888885433321      23567788777653322223355577777777666555 57899999       3458899


Q ss_pred             HHHHHHHHHcCCcc-----eEEeecceE
Q 016159          365 SGIVNAAKQVSALD-----CFGFHSNYF  387 (394)
Q Consensus       365 ~gii~a~~~~~~~~-----~~~~~~~~~  387 (394)
                      -|+++++++.++++     +.+|-++.+
T Consensus       251 ~g~~~al~~~G~~vP~disvig~D~~~~  278 (340)
T 1qpz_A          251 MGALCAADEMGLRVPQDVSLIGYDNVRN  278 (340)
T ss_dssp             HHHHHHHHHTTCCTTTTCEEEEEECCTT
T ss_pred             HHHHHHHHHcCCCCCCCeEEEeECCchH
Confidence            99999999999864     777776544

>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}

Probab=86.98  E-value=2.3  Score=38.61  Aligned_cols=89  Identities=19%  Similarity=0.215  Sum_probs=57.8

Q ss_pred             CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHH
Q 016159          292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA  364 (394)
Q Consensus       292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA  364 (394)
                      ++|+++..-.+..      -...+.+..+|.+.....-+-++.+.+..+++++-+++ .|++++||       ...|.+|
T Consensus       140 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a  212 (296)
T 3brq_A          140 QEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV-------ASNDDMA  212 (296)
T ss_dssp             CSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEE-------ESSHHHH
T ss_pred             ceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEE-------ECChHHH
Confidence            5888886543321      12457777777654322122355677777777666654 58899999       3358899


Q ss_pred             HHHHHHHHHcCCcc-----eEEeecceE
Q 016159          365 SGIVNAAKQVSALD-----CFGFHSNYF  387 (394)
Q Consensus       365 ~gii~a~~~~~~~~-----~~~~~~~~~  387 (394)
                      .|+++++++.++++     +.+|-++.+
T Consensus       213 ~g~~~al~~~g~~vP~di~vvg~d~~~~  240 (296)
T 3brq_A          213 IGAMKALHERGVAVPEQVSVIGFDDIAI  240 (296)
T ss_dssp             HHHHHHHHHHTCCTTTTCEEEEESCCTT
T ss_pred             HHHHHHHHHcCCCCCCceEEEeecCchh
Confidence            99999999998763     778777654

>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*

Probab=86.82  E-value=3.4  Score=37.78  Aligned_cols=89  Identities=21%  Similarity=0.192  Sum_probs=59.9

Q ss_pred             CceeEEecCh-hHHH------HHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHH
Q 016159          292 GEIGCMVNGA-GLAM------ATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVI  363 (394)
Q Consensus       292 G~Ig~~~nGa-Gl~m------~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~v  363 (394)
                      ++|+++..-. +...      ...+.+..+|.+...-.-+-++.+.+..+++++-+++ .|++++||       ...|.+
T Consensus       134 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~  206 (289)
T 2fep_A          134 TDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAIL-------SATDEM  206 (289)
T ss_dssp             SSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEE-------ESSHHH
T ss_pred             CeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEE-------ECCHHH
Confidence            5899887543 3221      3567788887654321112345567777777766655 57899999       346889


Q ss_pred             HHHHHHHHHHcCCcc-----eEEeecceE
Q 016159          364 ASGIVNAAKQVSALD-----CFGFHSNYF  387 (394)
Q Consensus       364 A~gii~a~~~~~~~~-----~~~~~~~~~  387 (394)
                      |.|+++++++.++++     +.+|-++..
T Consensus       207 A~g~~~al~~~G~~vP~di~vvg~D~~~~  235 (289)
T 2fep_A          207 ALGIIHAAQDQGLSIPEDLDIIGFDNTRL  235 (289)
T ss_dssp             HHHHHHHHHHTTCCTTTTCEEEEEECCGG
T ss_pred             HHHHHHHHHHcCCCCCCCeEEEEECChHH
Confidence            999999999998763     777776654

>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}

Probab=86.73  E-value=2.9  Score=38.21  Aligned_cols=89  Identities=15%  Similarity=0.110  Sum_probs=59.6

Q ss_pred             CceeEEecChhHH------HHHHHHHHHcCCCcc-ceeecCCCCCHHHHHHHHHHHhc--CC-CccEEEEEccCCCCChH
Q 016159          292 GEIGCMVNGAGLA------MATMDIIKLHGGTPA-NFLDVGGNASEGQVVEAFKILTS--DE-KVKAILVNIFGGIMKCD  361 (394)
Q Consensus       292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~a-NflD~gG~a~~~~~~~a~~~~l~--~~-~v~~i~vni~ggi~~~d  361 (394)
                      ++|+++..-.+..      -...+.+..+|.+.. .++- -++.+.+..+++++-+++  .| ++++||       ...|
T Consensus       126 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-------~~~d  197 (287)
T 3bbl_A          126 RRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYIL-RGEGTFEVGRAMTLHLLDLSPERRPTAIM-------TLND  197 (287)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEE-ECCSSHHHHHHHHHHHHTSCTTTSCSEEE-------ESSH
T ss_pred             CeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEE-eCCCCHHHHHHHHHHHHhhCCCCCCcEEE-------ECCc
Confidence            5888886543321      124577777776543 2222 345567777777666655  57 899999       3458


Q ss_pred             HHHHHHHHHHHHcCCcc-----eEEeecceEE
Q 016159          362 VIASGIVNAAKQVSALD-----CFGFHSNYFC  388 (394)
Q Consensus       362 ~vA~gii~a~~~~~~~~-----~~~~~~~~~~  388 (394)
                      .+|.|+++++++.++++     +.+|-++.++
T Consensus       198 ~~a~g~~~al~~~G~~vP~di~vig~d~~~~~  229 (287)
T 3bbl_A          198 TMAIGAMAAARERGLTIGTDLAIIGFDDAPMV  229 (287)
T ss_dssp             HHHHHHHHHHHHTTCCBTTTBEEEEESCCTTG
T ss_pred             HHHHHHHHHHHHcCCCCCCCEEEEEECCchHh
Confidence            89999999999999863     7788776543

>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A

Probab=86.59  E-value=2.9  Score=37.98  Aligned_cols=89  Identities=17%  Similarity=0.129  Sum_probs=57.0

Q ss_pred             CceeEEecChhH------HHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHH
Q 016159          292 GEIGCMVNGAGL------AMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA  364 (394)
Q Consensus       292 G~Ig~~~nGaGl------~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA  364 (394)
                      ++|+++..-.+.      --...+.+..+|.+...-.-.-++-+.+..+++++-+++ .|++++||       ...|.+|
T Consensus       127 ~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a  199 (289)
T 1dbq_A          127 REIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVF-------CGGDIMA  199 (289)
T ss_dssp             CSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEE-------ESCHHHH
T ss_pred             CeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEE-------ECCcHHH
Confidence            477777543221      123567787787654322222345566666666665554 58899998       3358899


Q ss_pred             HHHHHHHHHcCCcc-----eEEeecceE
Q 016159          365 SGIVNAAKQVSALD-----CFGFHSNYF  387 (394)
Q Consensus       365 ~gii~a~~~~~~~~-----~~~~~~~~~  387 (394)
                      .|+++++++.++++     +.+|-++.+
T Consensus       200 ~g~~~al~~~G~~vP~di~vvg~d~~~~  227 (289)
T 1dbq_A          200 MGALCAADEMGLRVPQDVSLIGYDNVRN  227 (289)
T ss_dssp             HHHHHHHHHTTCCTTTTCEEEEEECCTT
T ss_pred             HHHHHHHHHcCCCCCCceEEEeeCCchH
Confidence            99999999998763     777776654

>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}

Probab=85.35  E-value=5.3  Score=36.17  Aligned_cols=88  Identities=18%  Similarity=0.160  Sum_probs=59.0

Q ss_pred             CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHHH
Q 016159          292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVIA  364 (394)
Q Consensus       292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~vA  364 (394)
                      .+|+++....+..      -...+.+..+|.....-.-.-++.+.+..+++++-++ +.|++++||       ...|.+|
T Consensus       132 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a  204 (292)
T 3k4h_A          132 KQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIM-------ATDDLIG  204 (292)
T ss_dssp             CCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEE-------ESSHHHH
T ss_pred             ceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEE-------EcChHHH
Confidence            3888887554432      2345778777765432222235566777676666555 468999999       4468899


Q ss_pred             HHHHHHHHHcCCcc-----eEEeecce
Q 016159          365 SGIVNAAKQVSALD-----CFGFHSNY  386 (394)
Q Consensus       365 ~gii~a~~~~~~~~-----~~~~~~~~  386 (394)
                      .|+++++++.++++     +.+|-++.
T Consensus       205 ~g~~~al~~~g~~vP~di~vig~d~~~  231 (292)
T 3k4h_A          205 LGVLSALSKKGFVVPKDVSIVSFNNAL  231 (292)
T ss_dssp             HHHHHHHHHTTCCTTTTCEEEEESCCH
T ss_pred             HHHHHHHHHhCCCCCCeEEEEEecCcc
Confidence            99999999999863     67776553

>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}

Probab=85.17  E-value=3.4  Score=37.74  Aligned_cols=88  Identities=15%  Similarity=0.104  Sum_probs=58.0

Q ss_pred             CceeEEecChhHH------HHHHHHHHHcCCCcc-ceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHH
Q 016159          292 GEIGCMVNGAGLA------MATMDIIKLHGGTPA-NFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVI  363 (394)
Q Consensus       292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~a-NflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~v  363 (394)
                      ++|+++..-.+..      -...+.+..+|.+.. .++- -++.+.+..+++++-++ +.|++++||       ...|.+
T Consensus       129 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~  200 (290)
T 2rgy_A          129 RKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLI-ESDFSPEGGYAATCQLLESKAPFTGLF-------CANDTM  200 (290)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEE-ECCSSHHHHHHHHHHHHHHTCCCSEEE-------ESSHHH
T ss_pred             ceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEE-ecCCChhHHHHHHHHHHhCCCCCcEEE-------ECCcHH
Confidence            4898886543321      124567777775432 2222 24556666666665444 568899999       346889


Q ss_pred             HHHHHHHHHHcCCcc-----eEEeecceE
Q 016159          364 ASGIVNAAKQVSALD-----CFGFHSNYF  387 (394)
Q Consensus       364 A~gii~a~~~~~~~~-----~~~~~~~~~  387 (394)
                      |.|+++++++.++++     +.+|-++.+
T Consensus       201 A~g~~~al~~~G~~vP~di~vvg~D~~~~  229 (290)
T 2rgy_A          201 AVSALARFQQLGISVPGDVSVIGYDDDYS  229 (290)
T ss_dssp             HHHHHHHHHHTTCCTTTTCEEEEEECCTT
T ss_pred             HHHHHHHHHHcCCCCCCceEEEEeCCchH
Confidence            999999999999763     777776544

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=84.06  E-value=1.7  Score=43.97  Aligned_cols=62  Identities=21%  Similarity=0.228  Sum_probs=56.9

Q ss_pred             CceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEcc
Q 016159          292 GEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIF  354 (394)
Q Consensus       292 G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~  354 (394)
                      |+||+++--|+++...+|.+...|.-...|+-+|+.++ -.+...++.+..||++++|++.+=
T Consensus       150 G~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~~-~~~~d~l~~~~~D~~t~~I~l~~E  211 (457)
T 2csu_A          150 GNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMAD-VDFAELMEYLADTEEDKAIALYIE  211 (457)
T ss_dssp             CSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCS-SCHHHHHHHHTTCSSCCEEEEEES
T ss_pred             CCEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcCC-CCHHHHHHHHhcCCCCCEEEEEEe
Confidence            99999999999999999999999998899999999996 577889999999999999997543

>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*

Probab=83.79  E-value=4.2  Score=38.01  Aligned_cols=89  Identities=20%  Similarity=0.206  Sum_probs=59.6

Q ss_pred             CceeEEecCh-hHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHh-cCCCccEEEEEccCCCCChHHH
Q 016159          292 GEIGCMVNGA-GLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILT-SDEKVKAILVNIFGGIMKCDVI  363 (394)
Q Consensus       292 G~Ig~~~nGa-Gl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l-~~~~v~~i~vni~ggi~~~d~v  363 (394)
                      .+|+++..-. +..      -...+++..+|.+.....-.-++.+.+.-+++++-++ +.|++++||       ...|.+
T Consensus       178 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~nd~~  250 (332)
T 2hsg_A          178 KNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIF-------VGTDEM  250 (332)
T ss_dssp             SCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEE-------ESSHHH
T ss_pred             CEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-------ECChHH
Confidence            4888886543 322      2356788878765432111234556677666666555 467899999       346889


Q ss_pred             HHHHHHHHHHcCCcc-----eEEeecceE
Q 016159          364 ASGIVNAAKQVSALD-----CFGFHSNYF  387 (394)
Q Consensus       364 A~gii~a~~~~~~~~-----~~~~~~~~~  387 (394)
                      |-|+++++++.++++     +.+|-++.+
T Consensus       251 A~g~~~al~~~G~~vP~disvvg~D~~~~  279 (332)
T 2hsg_A          251 ALGVIHGAQDRGLNVPNDLEIIGFDNTRL  279 (332)
T ss_dssp             HHHHHHHHHHTTCCHHHHCEEEEESCCGG
T ss_pred             HHHHHHHHHHcCCCCCCCeEEEEECChHH
Confidence            999999999999874     777776654

>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}

Probab=82.93  E-value=2.6  Score=38.90  Aligned_cols=73  Identities=12%  Similarity=0.125  Sum_probs=51.9

Q ss_pred             HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHH-----hc-CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc--
Q 016159          307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKIL-----TS-DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD--  378 (394)
Q Consensus       307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~-----l~-~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~--  378 (394)
                      ..+++..+|..+..-.-.-++.+.+..+++++-+     ++ .|++++||       ...|.+|-|+++++++.++++  
T Consensus       153 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~-------~~nd~~A~g~~~al~~~G~~vP~  225 (303)
T 3kke_A          153 YLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVV-------VASVNAAVGALSTALRLGLRVPE  225 (303)
T ss_dssp             HHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEE-------ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred             HHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEE-------ECCHHHHHHHHHHHHHcCCCCCC
Confidence            4577777776554322234566777777766665     54 68899999       446899999999999999874  


Q ss_pred             ---eEEeecce
Q 016159          379 ---CFGFHSNY  386 (394)
Q Consensus       379 ---~~~~~~~~  386 (394)
                         +.+|-++.
T Consensus       226 di~vig~D~~~  236 (303)
T 3kke_A          226 DLSIVGINTTW  236 (303)
T ss_dssp             TCEEEEESCCH
T ss_pred             ceEEEEEcChh
Confidence               77776543

>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}

Probab=82.75  E-value=3.1  Score=39.19  Aligned_cols=88  Identities=14%  Similarity=0.085  Sum_probs=61.5

Q ss_pred             ceeEEecCh--hHH-----HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHH-hcCCCccEEEEEccCCCCChHHHH
Q 016159          293 EIGCMVNGA--GLA-----MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKIL-TSDEKVKAILVNIFGGIMKCDVIA  364 (394)
Q Consensus       293 ~Ig~~~nGa--Gl~-----m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~-l~~~~v~~i~vni~ggi~~~d~vA  364 (394)
                      +|+++....  ...     -...+++..+|..+....-+.++.+.+.-+++++-+ .+.|++++||       ...|.+|
T Consensus       187 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~nd~~A  259 (344)
T 3kjx_A          187 RIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLY-------YSNDMIA  259 (344)
T ss_dssp             SCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEE-------ESSHHHH
T ss_pred             eEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEE-------ECCHHHH
Confidence            788876543  111     235678888887655444455777777777766544 4578999999       4468999


Q ss_pred             HHHHHHHHHcCCcc-----eEEeecceE
Q 016159          365 SGIVNAAKQVSALD-----CFGFHSNYF  387 (394)
Q Consensus       365 ~gii~a~~~~~~~~-----~~~~~~~~~  387 (394)
                      -|+++++++.++++     +.+|-++.+
T Consensus       260 ~g~~~al~~~g~~vP~disvvg~D~~~~  287 (344)
T 3kjx_A          260 AGGLLYLLEQGIDIPGQIGLAGFNNVEL  287 (344)
T ss_dssp             HHHHHHHHHTTCCTTTTCEEECSBCCGG
T ss_pred             HHHHHHHHHcCCCCCCceEEEEECChHH
Confidence            99999999999864     677765543

>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}

Probab=82.58  E-value=3.3  Score=37.75  Aligned_cols=74  Identities=16%  Similarity=0.096  Sum_probs=50.8

Q ss_pred             HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eEE
Q 016159          307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CFG  381 (394)
Q Consensus       307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~~  381 (394)
                      ..+.+..+|.+...-.-.-++.+.+..+++++-+++.|++++||       ...|.+|.|+++++++.++++     +.+
T Consensus       147 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~-------~~~d~~a~g~~~al~~~g~~vP~di~vvg  219 (290)
T 3clk_A          147 YKKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGII-------AASDMTAIGILNQASSFGIEVPKDLSIVS  219 (290)
T ss_dssp             HHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEE-------ESSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred             HHHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEE-------ECCcHHHHHHHHHHHHcCCCCCCceEEEE
Confidence            45677777765432112235556777777766666577899998       345889999999999999763     777


Q ss_pred             eecceE
Q 016159          382 FHSNYF  387 (394)
Q Consensus       382 ~~~~~~  387 (394)
                      |-++.+
T Consensus       220 ~d~~~~  225 (290)
T 3clk_A          220 IDGTEM  225 (290)
T ss_dssp             EECCTH
T ss_pred             eCChHH
Confidence            766543

>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}

Probab=81.58  E-value=2.9  Score=38.18  Aligned_cols=74  Identities=12%  Similarity=-0.019  Sum_probs=52.6

Q ss_pred             HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eE
Q 016159          307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CF  380 (394)
Q Consensus       307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~  380 (394)
                      ..+.+..+|.......-..++.+.+..+++++-+++ .|++++||       ...|.+|.|+++++++.++++     +.
T Consensus       149 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~A~g~~~al~~~g~~vP~di~vi  221 (288)
T 3gv0_A          149 FNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIV-------SISGSSTIALVAGFEAAGVKIGEDVDIV  221 (288)
T ss_dssp             HHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEE-------ESCHHHHHHHHHHHHTTTCCTTTSCEEE
T ss_pred             HHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEE-------EcCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence            456777777644333334566777777777776665 57899999       345889999999999999874     77


Q ss_pred             EeecceE
Q 016159          381 GFHSNYF  387 (394)
Q Consensus       381 ~~~~~~~  387 (394)
                      +|-++.+
T Consensus       222 g~d~~~~  228 (288)
T 3gv0_A          222 SKQSAEF  228 (288)
T ss_dssp             EEESSTT
T ss_pred             EecChHH
Confidence            7766543

>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}

Probab=81.27  E-value=5.7  Score=37.38  Aligned_cols=87  Identities=15%  Similarity=0.035  Sum_probs=56.7

Q ss_pred             CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHH
Q 016159          292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIA  364 (394)
Q Consensus       292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA  364 (394)
                      ++|+++....+..      -...+.+..+|. .-.-.-.-++.+.+..+++++ ++.+.|++++||       +..|.+|
T Consensus       146 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~-------~~~d~~a  217 (350)
T 3h75_A          146 IELLAFSGLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVW-------SANDEMA  217 (350)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEE-------ESSHHHH
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEE-------ECChHHH
Confidence            4677776443322      235677777775 221122345566666666555 555678999998       4468899


Q ss_pred             HHHHHHHHHcCCcc-----eEEeecce
Q 016159          365 SGIVNAAKQVSALD-----CFGFHSNY  386 (394)
Q Consensus       365 ~gii~a~~~~~~~~-----~~~~~~~~  386 (394)
                      .|+++|+++.+.++     +.+|-++.
T Consensus       218 ~g~~~al~~~G~~vP~di~vvg~d~~~  244 (350)
T 3h75_A          218 LGAMQAARELGRKPGTDLLFSGVNSSP  244 (350)
T ss_dssp             HHHHHHHHHTTCCBTTTBEEEEESCCH
T ss_pred             HHHHHHHHHcCCCCCCCeEEEecCCCH
Confidence            99999999999873     67766553

>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}

Probab=80.92  E-value=3.8  Score=37.50  Aligned_cols=73  Identities=16%  Similarity=0.220  Sum_probs=52.2

Q ss_pred             HHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCcc-----eE
Q 016159          307 TMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIASGIVNAAKQVSALD-----CF  380 (394)
Q Consensus       307 t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA~gii~a~~~~~~~~-----~~  380 (394)
                      ..+.+..+|...... -+-++.+.+..+++++-+++ .|++++||       ...|.+|-|+++++++.++++     +.
T Consensus       147 f~~al~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~A~g~~~al~~~g~~vP~di~vi  218 (289)
T 3k9c_A          147 FLAAMDRHGLSASAT-VVTGGTTETEGAEGMHTLLEMPTPPTAVV-------AFNDRCATGVLDLLVRSGRDVPADISVV  218 (289)
T ss_dssp             HHHHHHHTTCGGGEE-EECCCSSHHHHHHHHHHHHTSSSCCSEEE-------ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred             HHHHHHHCCCCCCcc-EEECCCCHHHHHHHHHHHHcCCCCCCEEE-------ECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence            457777777653222 23466777777777665554 68999999       456899999999999999874     77


Q ss_pred             EeecceE
Q 016159          381 GFHSNYF  387 (394)
Q Consensus       381 ~~~~~~~  387 (394)
                      +|-++.+
T Consensus       219 g~D~~~~  225 (289)
T 3k9c_A          219 GYDDSRL  225 (289)
T ss_dssp             EEECCTT
T ss_pred             EECCHHH
Confidence            7766543

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=80.87  E-value=3  Score=45.37  Aligned_cols=64  Identities=16%  Similarity=0.190  Sum_probs=56.4

Q ss_pred             cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCC-CHHHHHHHHHHHhcCCCccEEEEEc
Q 016159          290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNA-SEGQVVEAFKILTSDEKVKAILVNI  353 (394)
Q Consensus       290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a-~~~~~~~a~~~~l~~~~v~~i~vni  353 (394)
                      .+|+||+++--|+++...+|.+...|.--.-++-+||++ ..-.+...++.+..||++++|++.+
T Consensus       653 ~~G~VgiVSqSGal~~~i~~~~~~~g~G~S~~VsiGnd~~~d~~~~D~L~~l~~Dp~T~~Ivly~  717 (829)
T 3pff_A          653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLG  717 (829)
T ss_dssp             SCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEE
T ss_pred             CCCcEEEEechhHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCCHHHHHHHHhhCCCCCEEEEEE
Confidence            569999999999999999999999998788899999986 3356788999999999999998743

>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...

Probab=80.29  E-value=6.1  Score=37.31  Aligned_cols=88  Identities=14%  Similarity=0.071  Sum_probs=58.6

Q ss_pred             CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHH-HHhcCCCccEEEEEccCCCCChHHHH
Q 016159          292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFK-ILTSDEKVKAILVNIFGGIMKCDVIA  364 (394)
Q Consensus       292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~-~~l~~~~v~~i~vni~ggi~~~d~vA  364 (394)
                      ++|+++..-.+..      -...+++..+|.++...  .-|+-+.+.-+++++ ++.+.|++++||       ...|.+|
T Consensus       180 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~ai~-------~~nD~~A  250 (349)
T 1jye_A          180 QQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAE--REGDWSAMSGFQQTMQMLNEGIVPTAML-------VANDQMA  250 (349)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEE--EECCSSHHHHHHHHHHHHHTTCCCSEEE-------ESSHHHH
T ss_pred             CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCcccc--ccCCCChHHHHHHHHHHHhCCCCCCEEE-------ECChHHH
Confidence            5898886543321      23567888887654322  234556666555554 444567899999       3468899


Q ss_pred             HHHHHHHHHcCCcc-----eEEeecceEE
Q 016159          365 SGIVNAAKQVSALD-----CFGFHSNYFC  388 (394)
Q Consensus       365 ~gii~a~~~~~~~~-----~~~~~~~~~~  388 (394)
                      -|+++++++.++++     +.+|-++.++
T Consensus       251 ~g~~~al~~~G~~vP~disvvGfD~~~~~  279 (349)
T 1jye_A          251 LGAMRAITESGLRVGADISVVGYDDTEDS  279 (349)
T ss_dssp             HHHHHHHHHTTCCBTTTBEEECSBCCGGG
T ss_pred             HHHHHHHHHcCCCCCCcEEEEEECCcHHH
Confidence            99999999999864     6777665543

>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}

Probab=80.28  E-value=3.5  Score=37.63  Aligned_cols=87  Identities=10%  Similarity=0.055  Sum_probs=58.0

Q ss_pred             CceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHH
Q 016159          292 GEIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIA  364 (394)
Q Consensus       292 G~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA  364 (394)
                      ++|+++..-.+..      -...+.+..+|.++ .++ ..++.+.+..+++++-+++ .|++++||       ...|.+|
T Consensus       139 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a  209 (293)
T 2iks_A          139 ETVLYLGALPELSVSFLREQGFRTAWKDDPREV-HFL-YANSYEREAAAQLFEKWLETHPMPQALF-------TTSFALL  209 (293)
T ss_dssp             SSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCE-EEE-EESSSCHHHHHHHHHHHTTTSCCCSEEE-------ESSHHHH
T ss_pred             CEEEEEecCcccccHHHHHHHHHHHHHHcCCCc-cEE-EcCCCChhhHHHHHHHHHhcCCCCCEEE-------ECChHHH
Confidence            5899886543322      12456666666532 222 2355677777777666655 57899999       3468899


Q ss_pred             HHHHHHHHHcCCcc-----eEEeecceE
Q 016159          365 SGIVNAAKQVSALD-----CFGFHSNYF  387 (394)
Q Consensus       365 ~gii~a~~~~~~~~-----~~~~~~~~~  387 (394)
                      .|+++++++.++++     +.+|-++.+
T Consensus       210 ~g~~~al~~~g~~vP~di~vvg~d~~~~  237 (293)
T 2iks_A          210 QGVMDVTLRRDGKLPSDLAIATFGDNEL  237 (293)
T ss_dssp             HHHHHHHHHHHSSCCSSCEEEEESCCGG
T ss_pred             HHHHHHHHHcCCCCCCceEEEEECCHHH
Confidence            99999999998763     778877654

>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}

Probab=80.07  E-value=3.8  Score=37.19  Aligned_cols=84  Identities=14%  Similarity=0.096  Sum_probs=56.0

Q ss_pred             ceeEEecChhHH------HHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhc-CCCccEEEEEccCCCCChHHHHH
Q 016159          293 EIGCMVNGAGLA------MATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTS-DEKVKAILVNIFGGIMKCDVIAS  365 (394)
Q Consensus       293 ~Ig~~~nGaGl~------m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~-~~~v~~i~vni~ggi~~~d~vA~  365 (394)
                      +|+++..-.+..      -...+.+..+|..+..-.-+.++.+.+..+++++-+++ .|++++||       ...|.+|.
T Consensus       129 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-------~~~d~~a~  201 (289)
T 3g85_A          129 SAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALF-------CNSDSIAL  201 (289)
T ss_dssp             BCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEE-------ESSHHHHH
T ss_pred             EEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEE-------EcCCHHHH
Confidence            666665433221      13457777777654332223456677777776665554 68899999       44689999


Q ss_pred             HHHHHHHHcCCcc-----eEEee
Q 016159          366 GIVNAAKQVSALD-----CFGFH  383 (394)
Q Consensus       366 gii~a~~~~~~~~-----~~~~~  383 (394)
                      |+++++++.++++     +.+|-
T Consensus       202 g~~~al~~~g~~vP~di~vig~d  224 (289)
T 3g85_A          202 GVISVLNKRQISIPDDIEIVAIG  224 (289)
T ss_dssp             HHHHHHHHTTCCTTTTCEEEEEE
T ss_pred             HHHHHHHHcCCCCCCceEEEEeC
Confidence            9999999999864     66766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	394
d2nu7b2	238	d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-	2e-56
d1eucb2	246	d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-	5e-52
d2nu7b1	150	c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta	4e-36
d1eucb1	148	c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta	4e-36
d2csua3	163	c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chai	1e-08
d1a9xa5	275	d.142.1.2 (A:128-402) Carbamoyl phosphate syntheta	0.003

>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  183 bits (465), Expect = 2e-56
 Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 8/246 (3%)

Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
           +N+HEYQ  +L A+YG+  P G A  +  E ++A           VVK Q+ AGGRG   
Sbjct: 1   MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASK--IGAGPWVVKCQVHAGGRGKA- 57

Query: 88  FKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAI 147
                 G   +  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y   
Sbjct: 58  -----GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGA 112

Query: 148 MLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVA 207
           ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       ++   L  +  
Sbjct: 113 VVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGK 172

Query: 208 DRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFAL 267
                 +    L  +F E D  L+EINPL  T    L+  D KL  D NA FRQ ++  +
Sbjct: 173 LVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREM 232

Query: 268 RDPTQE 273
           RD +QE
Sbjct: 233 RDQSQE 238

>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  172 bits (435), Expect = 5e-52
 Identities = 109/246 (44%), Positives = 155/246 (63%), Gaps = 3/246 (1%)

Query: 28  LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGT 87
           +N+ EYQ  +LM+  G+ V +     + +E  +A +    + KE+V+K+QILAGGRG G 
Sbjct: 2   VNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKR--LNAKEIVLKAQILAGGRGKGV 59

Query: 88  FKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFA 146
           F SGLKGGVH+ K  E V  LA +M+G  L TKQT  +G  V+KV + E L +  E Y A
Sbjct: 60  FSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLA 119

Query: 147 IMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKV 206
           I++DR   GP+++G  +GG  IE++A   P +I K  ID+  GI D  A ++ + L    
Sbjct: 120 ILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLG 179

Query: 207 ADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIFA 266
             +N A +Q+KKLY LF + D T +E+NP  ET   Q+V  DAK+NFDDNA FRQK+IFA
Sbjct: 180 PLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFA 239

Query: 267 LRDPTQ 272
           + D ++
Sbjct: 240 MDDKSE 245

>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 150

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  127 bits (320), Expect = 4e-36
 Identities = 71/101 (70%), Positives = 86/101 (85%)

Query: 274 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQV 333
           DPRE  AA+ +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +V
Sbjct: 1   DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERV 60

Query: 334 VEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
            EAFKI+ SD+KVKA+LVNIFGGI++CD+IA GI+ A  +V
Sbjct: 61  TEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEV 101

>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  127 bits (320), Expect = 4e-36
 Identities = 66/101 (65%), Positives = 79/101 (78%)

Query: 274 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQV 333
           +P E  AAK DL YIGLDG I C VNGAGLAMAT DII L+GG PANFLD+GG   E QV
Sbjct: 1   EPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQV 60

Query: 334 VEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVNAAKQV 374
            +AFK+LT+D KV+AILVNIFGGI+ C +IA+GI  A +++
Sbjct: 61  YQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACREL 101

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 24/106 (22%)

Query: 294 IGCMVNGAGLAMATMDIIKLHGGTPA---------------------NFLDVGGNASEGQ 332
           +  M N  G  + T D +   G   A                     N +D+  +A    
Sbjct: 6   VAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGED 65

Query: 333 VVEAFKILTSDEKVKAILVNIF---GGIMKCDVIASGIVNAAKQVS 375
                K+L  D  V  ++          M     A GI+ A K+V+
Sbjct: 66  YYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVN 111

>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 275

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 37 ELMAKYGINVPKGLAVASVDEVKKAIQDA-FPDHKELVVKSQILAGGRGLG 86
            M K G+   +     +++E      D  FP     +++     GG G G
Sbjct: 7  VAMKKIGLETARSGIAHTMEEALAVAADVGFP----CIIRPSFTMGGSGGG 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	394
d2nu7b2	238	Succinyl-CoA synthetase, beta-chain, N-terminal do	100.0
d1eucb2	246	Succinyl-CoA synthetase, beta-chain, N-terminal do	100.0
d1eucb1	148	Succinyl-CoA synthetase, beta-chain, C-terminal do	100.0
d2nu7b1	150	Succinyl-CoA synthetase, beta-chain, C-terminal do	100.0
d1vkza3	220	Glycinamide ribonucleotide synthetase (GAR-syn), d	99.47
d1ulza3	214	Biotin carboxylase (BC), domain 2 {Aquifex aeolicu	99.39
d1gsoa3	224	Glycinamide ribonucleotide synthetase (GAR-syn), d	99.34
d2j9ga3	216	Biotin carboxylase (BC), domain 2 {Escherichia col	99.33
d1a9xa6	259	Carbamoyl phosphate synthetase (CPS), large subuni	99.31
d1a9xa5	275	Carbamoyl phosphate synthetase (CPS), large subuni	99.2
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	99.14
d1w96a3	267	Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye	99.11
d1iowa2	210	D-ala-D-ala ligase, C-domain {Escherichia coli, ge	99.07
d1ehia2	228	D-alanine:D-lactate ligase VanA, C-domain {Leucono	99.04
d2r7ka2	238	5-formaminoimidazole-4-carboxamide ribonucleotide	98.88
d1e4ea2	211	D-alanine:D-lactate ligase VanA, C-domain {Enteroc	98.75
d2r85a2	235	5-formaminoimidazole-4-carboxamide ribonucleotide	98.73
d3etja3	198	N5-carboxyaminoimidazole ribonucleotide synthetase	98.72
d1kjqa3	206	Glycinamide ribonucleotide transformylase PurT, do	98.62
d1uc8a2	192	Lysine biosynthesis enzyme LysX ATP-binding domain	98.53
d1i7na2	206	Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116	97.12
d2csua2	161	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	95.58
d1gsaa2	192	Prokaryotic glutathione synthetase, C-domain {Esch	92.95
d1oi7a2	167	Succinyl-CoA synthetase, alpha-chain, C-terminal d	90.57
d1euca2	176	Succinyl-CoA synthetase, alpha-chain, C-terminal d	84.41

>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-52  Score=393.86  Aligned_cols=236  Identities=34%  Similarity=0.542  Sum_probs=224.3

Q ss_pred             cCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCC-cEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           28 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHK-ELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        28 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~-PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      |+|+|||||+||++||||||++.+++|++||.++|+++|   | |||+|+|...+||||+       |||+++ +++|+.
T Consensus         1 m~L~E~eaK~lL~~yGIpvp~~~~a~s~~ea~~~a~~iG---~~pvVlKaq~~~~hk~~~-------GGV~~~~~~~e~~   70 (238)
T d2nu7b2           1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIG---AGPWVVKCQVHAGGRGKA-------GGVKVVNSKEDIR   70 (238)
T ss_dssp             CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHC---SSCEEEEECCSSSCTTTT-------TCEEEECSHHHHH
T ss_pred             CchhHHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHhC---CCcEEEEEeecccccccc-------eEEEeccccHHHH
Confidence            899999999999999999999999999999999999997   6 9999999888999985       999999 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecC
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID  185 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~  185 (394)
                      +++.+++++.+.+.|+.+.|..+++++||+|+++++|+|+|+..||.|++++++.|..||+++|++.+.+|..+...+++
T Consensus        71 ~~a~~~~~~~~~~~~~~~~g~~v~~vlve~~~~~~~E~~lg~~~D~~~g~~~l~~s~~GGv~ie~~~~~~~~~~~~~~~~  150 (238)
T d2nu7b2          71 AFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALD  150 (238)
T ss_dssp             HHHHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECC
T ss_pred             HHHHHHhCcceeeeccccCCcccceeeecceeecccceEEEEEEeccCCceEEEEecccceeeEeeeccccccccccccC
Confidence            99999999998899999999999999999999999999999999999986667777789999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcchhccchhhh
Q 016159          186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIF  265 (394)
Q Consensus       186 p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a~fR~~~~~  265 (394)
                      |..++....+.+++..+|+++.+..++++++.++|++|.+.+++++|||||+++++|+++|+|||+.+||||.|||++++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~lEINPLiv~~~G~vvAlDAki~lDdnA~fr~~~~~  230 (238)
T d2nu7b2         151 PLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLR  230 (238)
T ss_dssp             TTTCCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHHHH
T ss_pred             cccccchhhHHHHHHhcCCcchhhHHHHHHHHHhhHhhhcCCceEEeecceEECCCCCEEEEEeEEeecCcchhcChhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCC
Q 016159          266 ALRDPTQE  273 (394)
Q Consensus       266 ~~~~~~~~  273 (394)
                      .++|.+++
T Consensus       231 ~~~d~~~e  238 (238)
T d2nu7b2         231 EMRDQSQE  238 (238)
T ss_dssp             HTCCGGGS
T ss_pred             hhcCcCCC
Confidence            99987653

>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.3e-48  Score=366.86  Aligned_cols=244  Identities=44%  Similarity=0.720  Sum_probs=226.9

Q ss_pred             ccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHH
Q 016159           27 RLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVE  105 (394)
Q Consensus        27 ~m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~  105 (394)
                      .|+|+|||||++|++||||+|++.+++|++||.++|+++|  .+|||+|+|+++|+|||++.+.++.|||+++ |++|+.
T Consensus         1 ~m~L~E~eaK~lL~~yGIpvp~~~~a~s~~ea~~~a~~ig--~~~vVlK~qv~~g~r~~~~~~k~~~GgV~~~~~~ee~~   78 (246)
T d1eucb2           1 MVNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLN--AKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVG   78 (246)
T ss_dssp             CCCCCHHHHHHHHHTTTCCCCCEEEESSHHHHHHHHHHHT--CSSEEEEECCSSSCCTTCEETTSCBCSEEEESCHHHHH
T ss_pred             CccHhHHHHHHHHHHcCCCCCCeeEECCHHHHHHHHHHhC--CCeEEEEEeeccccccccccccCCcceEEEecChhHHH
Confidence            3899999999999999999999999999999999999996  2489999999999999988778889999999 999999


Q ss_pred             HHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccCCCeEEEEecC
Q 016159          106 DLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPID  185 (394)
Q Consensus       106 ~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~pd~i~~~~v~  185 (394)
                      +++++++.+...++++.+.+..+.++++|++++++.|+|+|+..|+.|++++++++..||+++|.+.+..+........+
T Consensus        79 ~~a~~~~~~~~~~~~~~~~~~~v~~vlve~~~~~~~E~~vg~~~D~~~g~~~l~~~~~GGv~ve~~~~~~~~~~~~~~~~  158 (246)
T d1eucb2          79 QLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQID  158 (246)
T ss_dssp             HHHHTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEEGGGTEEEEEEESSCSSCHHHHHHHCGGGCEEEECB
T ss_pred             HHhhhhhcchhhhhhccccccccccceehhcccccceeeeeeeecccccceeEEEeechhhhhhhhhhhccccchhhccc
Confidence            99999998887777777778888999999999999999999999999998888888889999999999888877777788


Q ss_pred             CCCCCCHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcCCcceeeecceeeccCCcEEEeeceeecCcchhccchhhh
Q 016159          186 VFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKEIF  265 (394)
Q Consensus       186 p~~gl~~~~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~~e~d~~~lEINPLvv~~~G~~~alDaki~ldd~a~fR~~~~~  265 (394)
                      +...++......++...+.+..+..++..++..++.+|.+.|++++|||||+++++|+++|+|||+.+||||.||||++.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iEINPLiv~~dG~vvAlDAri~lDdnA~~r~~~~~  238 (246)
T d1eucb2         159 IIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIF  238 (246)
T ss_dssp             TTTBCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTTEEEECCEEEEECGGGGGGCHHHH
T ss_pred             ccccccchHHHHHHHhcCCchhhhHHHHHHHHHHHHHHhcCCccEEeeeceEECCCCCEEEEEeEEeecCcchhcCccHH
Confidence            88888999999999988888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCC
Q 016159          266 ALRDPTQ  272 (394)
Q Consensus       266 ~~~~~~~  272 (394)
                      .++|++|
T Consensus       239 ~~~d~~~  245 (246)
T d1eucb2         239 AMDDKSE  245 (246)
T ss_dssp             HTCCCTT
T ss_pred             HhhCCCC
Confidence            9998775

>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.5e-42  Score=296.78  Aligned_cols=113  Identities=58%  Similarity=0.938  Sum_probs=110.2

Q ss_pred             CHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEc
Q 016159          274 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNI  353 (394)
Q Consensus       274 ~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni  353 (394)
                      ||.|.+|+++||+|++|+||||||+|||||+|+|||+|+++||+||||||+||+|+.+++++||+++++||+||+|||||
T Consensus         1 dp~E~~a~~~~l~yv~LdG~IG~i~NGAGlaMaTmD~i~~~Gg~pANFlDiGGga~~e~v~~al~iil~d~~Vk~IlINI   80 (148)
T d1eucb1           1 EPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNI   80 (148)
T ss_dssp             CHHHHHHHHTTCEEEECSCSEEEEESSHHHHHHHHHHHHHTTCCBSEEEECCSSCCHHHHHHHHHHTTSCTTCCEEEEEE
T ss_pred             ChhhHHHHHcCCcEEEecCcEEEEecCCccchhHHHHHHHcCCCeeeEEecCCCCCHHHHHHHHHHHHCCCCccEEEEEe
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCChHHHHHHHHHHHHHcCCcc--eEEeecce
Q 016159          354 FGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNY  386 (394)
Q Consensus       354 ~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~  386 (394)
                      ||||++||+||+||++|+++.+.++  +.++.||-
T Consensus        81 fGGI~rcD~vA~GIv~A~~e~~~~iPiVVRL~Gtn  115 (148)
T d1eucb1          81 FGGIVNCAIIANGITKACRELELKVPLVVRLEGTN  115 (148)
T ss_dssp             ECSSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTT
T ss_pred             eEeehhHHHHHHHHHHHHHhcCCCccEEEEeccCC
Confidence            9999999999999999999998777  99999983

>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-41  Score=291.45  Aligned_cols=113  Identities=64%  Similarity=1.054  Sum_probs=110.0

Q ss_pred             CHHhHhhhcCCCeEEccCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEc
Q 016159          274 DPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNI  353 (394)
Q Consensus       274 ~~~e~~a~~~~l~y~~l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni  353 (394)
                      ||.|.+|++++|+|++|+|+||||+||||++|+|||+|+++||+||||||+||+|+.+++++||+++++||+||+|||||
T Consensus         1 d~~E~~a~~~~l~yv~LdG~Ig~i~nGAGlamaTmD~i~~~Gg~pANFlDiGG~a~~e~v~~al~lil~d~~vk~IlINi   80 (150)
T d2nu7b1           1 DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNI   80 (150)
T ss_dssp             CHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEE
T ss_pred             CHhHHHHHHcCCcEEEecCcEEEEEcCCccchhhHHHHHHCCCCeeEEEecCCCccHHHHHHHHHHHHcCCCCCEEEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCChHHHHHHHHHHHHHcCCcc--eEEeecce
Q 016159          354 FGGIMKCDVIASGIVNAAKQVSALD--CFGFHSNY  386 (394)
Q Consensus       354 ~ggi~~~d~vA~gii~a~~~~~~~~--~~~~~~~~  386 (394)
                      ||||++||+||+||++|+++.++++  +.+..||-
T Consensus        81 fGGI~rcd~vA~GIv~A~k~~~~~iPiVVRl~Gtn  115 (150)
T d2nu7b1          81 FGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNN  115 (150)
T ss_dssp             ESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTT
T ss_pred             eeeeehhHHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence            9999999999999999999998887  88999983

>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=4.1e-13  Score=121.42  Aligned_cols=101  Identities=25%  Similarity=0.302  Sum_probs=83.6

Q ss_pred             CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHH
Q 016159           31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAG  109 (394)
Q Consensus        31 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~  109 (394)
                      ++..+|++|+++|||+|++..++|.+|+.++++++|   +|+||||....|  |+         ||.++ |.+++.++++
T Consensus         1 sK~~~K~~l~~~gIptp~~~~~~~~~e~~~~~~~ig---~PvVvKP~~~~g--s~---------Gv~~v~~~~el~~a~~   66 (220)
T d1vkza3           1 SKVYAKRFMKKYGIRTARFEVAETPEELREKIKKFS---PPYVIKADGLAR--GK---------GVLILDSKEETIEKGS   66 (220)
T ss_dssp             CHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHTTSC---SSEEEEESSCCS--SC---------CEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCCCCCeEEeCCHHHHHHHHHHcC---CCEEEEeccccc--cc---------cceeeccHHHHHHHhh
Confidence            456899999999999999999999999999999998   999999965333  33         79999 9999999999


Q ss_pred             HHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          110 KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       110 ~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                      +++....       .+..-..++||||+. +.|+.+....|...
T Consensus        67 ~~~~~~~-------~~~~~~~vliEe~i~-g~e~~v~~~~~~~~  102 (220)
T d1vkza3          67 KLIIGEL-------IKGVKGPVVIDEFLA-GNELSAMAVVNGRN  102 (220)
T ss_dssp             HHHHTSS-------STTCCSCEEEEECCC-SEEEEEEEEEETTE
T ss_pred             hhccccc-------cccccceEeeecccc-cccceeEEEEeCCE
Confidence            9865432       222336899999998 89999988887543

>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Biotin carboxylase (BC), domain 2
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.39  E-value=6e-13  Score=120.12  Aligned_cols=101  Identities=17%  Similarity=0.192  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHcCCCCCC-c-eeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHH
Q 016159           32 EYQGAELMAKYGINVPK-G-LAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLA  108 (394)
Q Consensus        32 E~~aK~lL~~~GIpvp~-~-~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~  108 (394)
                      ++.+|++|+++|||+++ + .++.|.+|+.++++++|   ||+||||....+  |+         ||.++ |.+|+..++
T Consensus         1 K~~~k~~~~~aGvP~~p~~~~~v~s~~ea~~~~~~ig---~P~vvKP~~~~~--s~---------gv~~v~~~~el~~a~   66 (214)
T d1ulza3           1 KARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIG---YPVLLKATAGGG--GR---------GIRICRNEEELVKNY   66 (214)
T ss_dssp             HHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHC---SSEEEEECSSSS--CC---------SCEEESSHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCcCCCcCCCCCCHHHHHHHHHHcC---CCEEEeeccccC--Cc---------cceeeeccHHHHHHH
Confidence            35789999999999755 3 46899999999999999   999999975433  33         68888 999999888


Q ss_pred             HHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          109 GKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       109 ~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                      +........       ......++|||++++..+....+..|.+.
T Consensus        67 ~~~~~~~~~-------~~~~~~viiEe~i~G~e~~~~~~~~d~~~  104 (214)
T d1ulza3          67 EQASREAEK-------AFGRGDLLLEKFIENPKHIEYQVLGDKHG  104 (214)
T ss_dssp             HHHHHHHHH-------TTSCCCEEEEECCCSCEEEEEEEEECTTS
T ss_pred             HHHHHHHHH-------hcCCCCceeheeecCcceeeEEEEEcCCC
Confidence            876544321       11125799999999656666777777764

>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.4e-12  Score=119.42  Aligned_cols=101  Identities=22%  Similarity=0.253  Sum_probs=81.9

Q ss_pred             CHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHH
Q 016159           31 HEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAG  109 (394)
Q Consensus        31 ~E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~  109 (394)
                      ++..+|++|++||||+|++..+++.+||.+++++++   +|+||||..+++|  |         ||.++ +.+++.++++
T Consensus         1 SK~f~K~~~~~~~IPt~~~~~~~~~~ea~~~~~~~~---~P~VvK~~~~~~g--k---------Gv~i~~~~~e~~~a~~   66 (224)
T d1gsoa3           1 SKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKG---APIVIKADGLAAG--K---------GVIVAMTLEEAEAAVH   66 (224)
T ss_dssp             CHHHHHHHHHHTTCCBCCEEEESSSSHHHHHHHHHC---SSEEEEC--------C---------CEEEESSHHHHHHHHT
T ss_pred             CHHHHHHHHHHcCCCCCCceEeCCHHHHHHHHHHcC---CCEEEEeCCcccc--c---------ceeeehhHHHHHHHHH
Confidence            356789999999999999999999999999999998   9999999987764  4         59899 9999999998


Q ss_pred             HHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          110 KMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       110 ~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                      .++....       .|..-+.|+|||++. |.|+.+.+..|...
T Consensus        67 ~~~~~~~-------~~~~~~~vliEefl~-G~E~s~~~i~dg~~  102 (224)
T d1gsoa3          67 DMLAGNA-------FGDAGHRIVIEEFLD-GEEASFIVMVDGEH  102 (224)
T ss_dssp             TTTCSCC-------TTCTTCCEEEEECCC-EEEEEEEEEEESSC
T ss_pred             HHHhccc-------ccccCceEEeecccc-cccceeEEEeccCc
Confidence            8875432       233336899999998 89999999998765

>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Biotin carboxylase (BC), domain 2
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.7e-11  Score=111.06  Aligned_cols=102  Identities=15%  Similarity=0.159  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHcCCCCCC---ceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHH
Q 016159           32 EYQGAELMAKYGINVPK---GLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDL  107 (394)
Q Consensus        32 E~~aK~lL~~~GIpvp~---~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a  107 (394)
                      +..+|++|++.|||+.+   +.+++|.||+.++++++|   ||++|||....|+  +         ||.++ |.++++++
T Consensus         2 K~~~~~~~~~~GvP~vp~~~~~~~~s~dea~~~a~~iG---~PvivKp~~~~gg--r---------Gv~~v~~~~el~~a   67 (216)
T d2j9ga3           2 KVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIG---YPVIIKASGGGGG--R---------GMRVVRGDAELAQS   67 (216)
T ss_dssp             HHHHHHHHHHHTCCBCCBCSSCCCSCHHHHHHHHHHHC---SSEEEEEEEEETT--E---------EEEEECSHHHHHHH
T ss_pred             HHHHHHHHHHcCcCCCCCCCCCCCCCHHHHHHHHHHcC---CCEEEecccccCC--c---------eeEeecchhHHHHH
Confidence            45789999999999644   457899999999999999   9999999765443  3         68888 99999999


Q ss_pred             HHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCC
Q 016159          108 AGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTA  154 (394)
Q Consensus       108 ~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~  154 (394)
                      ++..+....       ....-..++||+++++.+|..+.+..|....
T Consensus        68 ~~~~~~ea~-------~~~~~~~vlvE~~i~g~~~~~~~i~~dg~~~  107 (216)
T d2j9ga3          68 ISMTRAEAK-------AAFSNDMVYMEKYLENPRHVEIQVLADGQGN  107 (216)
T ss_dssp             HHHHHHHTC---------CCCCCEEEEECCSSCEEEEEEEEEESSSC
T ss_pred             HHHHHHHHH-------HhcCCCceEeeeeecCcccceeEEEEcCCCC
Confidence            998764321       0111257999999998889999999998864

>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=2.1e-12  Score=120.81  Aligned_cols=158  Identities=16%  Similarity=0.232  Sum_probs=100.5

Q ss_pred             HHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcc
Q 016159           36 AELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQ  114 (394)
Q Consensus        36 K~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~  114 (394)
                      +++|.+.|||+|++..++|.+||.++++++|   ||++|||....|  |+         |+.++ |.+|+.+++++....
T Consensus         3 ~~~l~~lgi~~p~~~~v~s~~ea~~~a~~iG---fPvivKps~~~g--G~---------G~~iv~~~~el~~~~~~a~~~   68 (259)
T d1a9xa6           3 QHAVERLKLKQPANATVTAIEMAVEKAKEIG---YPLVVRASYVLG--GR---------AMEIVYDEADLRRYFQTAVSV   68 (259)
T ss_dssp             HHHHHHHTCCCCCEEECCSHHHHHHHHHHHC---SSEEEEC------------------CEEEECSHHHHHHHHHHCC--
T ss_pred             HHHHHHCCCCCCCceEECCHHHHHHHHHHhC---CCEEEEECCCCC--CC---------ccEeecCHHHHHHHhhhhhcc
Confidence            6899999999999999999999999999999   999999965444  34         58888 999999998876432


Q ss_pred             cccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCCceeeeeccCCCcceeeccccC---CCeEEEEecCCCCCCC
Q 016159          115 ILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKY---PNMIVKVPIDVFNGIT  191 (394)
Q Consensus       115 ~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~~Pvi~~s~~GGv~iE~~~~~~---pd~i~~~~v~p~~gl~  191 (394)
                      .           .-..++||+++...+|+.+-+.+|...   +++.+    + +|.+....   -|.....|.   ..++
T Consensus        69 ~-----------~~~~vlie~~i~~~~Eiev~~i~Dg~~---~~i~~----i-~e~i~~~gvhsgds~~~~p~---~~l~  126 (259)
T d1a9xa6          69 S-----------NDAPVLLDHFLDDAVEVDVDAICDGEM---VLIGG----I-MEHIEQAGVHSGDSACSLPA---YTLS  126 (259)
T ss_dssp             -----------------EEEBCCTTCEEEEEEEEECSSC---EEEEE----E-EEESSCTTSCGGGCCEEESC---SSCC
T ss_pred             c-----------ccchhhhhhhcCCCeEEEEEEEEeCCc---EEEEe----e-eeccccCcceeEeccccccC---ccCC
Confidence            2           124799999999899999999999642   34333    1 33333221   122222322   2356


Q ss_pred             HH-------HHHHHHHhCCCCcccHHHHHHHHHHHHHHh-hcCCcceeeecceeec
Q 016159          192 DE-------DAAKVVDGLAPKVADRNDAIEQVKKLYKLF-CESDCTLLEINPLAET  239 (394)
Q Consensus       192 ~~-------~a~~l~~~lg~~~~~~~~l~~~l~~L~~l~-~e~d~~~lEINPLvv~  239 (394)
                      +.       .++++++.+++.+..-          .+.+ .+.+...+|+||.+-.
T Consensus       127 ~~~~~~l~~~a~kia~~l~~~G~~~----------vef~v~~~~~y~iEvNpR~~~  172 (259)
T d1a9xa6         127 QEIQDVMRQQVQKLAFELQVRGLMN----------VQFAVKNNEVYLIEVNPRAAR  172 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCEEEE----------EEEEECSSCEEEEEEECSCCT
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccee----------EEEEEECCEEEEEEcccccCC
Confidence            53       3445566666543110          0111 2446778999998764

>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=3.4e-10  Score=106.04  Aligned_cols=96  Identities=18%  Similarity=0.237  Sum_probs=80.9

Q ss_pred             HHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHh
Q 016159           34 QGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKML  112 (394)
Q Consensus        34 ~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l  112 (394)
                      ..|++|.+.|||+|++..+.|.+|+.++++++|   ||+||||....|  |+         |+.++ +++++.+++++.+
T Consensus         4 ~~r~~~~~~gip~~~~~~~~~~~ea~~~~~~ig---~PvviKp~~~~g--g~---------G~~~v~~~~el~~~~~~a~   69 (275)
T d1a9xa5           4 RFDVAMKKIGLETARSGIAHTMEEALAVAADVG---FPCIIRPSFTMG--GS---------GGGIAYNREEFEEICARGL   69 (275)
T ss_dssp             HHHHHHHHTTCCCCSEEEESSHHHHHHHHHHHC---SSEEEEETTCCT--TT---------TCEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcC---CCEEEEECCCCC--CC---------ceEEeeCHHHHHHHHHHHH
Confidence            468999999999999999999999999999999   999999965434  44         57888 9999999998865


Q ss_pred             cccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCC
Q 016159          113 GQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTA  154 (394)
Q Consensus       113 ~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~  154 (394)
                      ...        .+   ..++|||+++..+|+.+-+..|....
T Consensus        70 ~~~--------~~---~~v~iEe~l~g~~e~~v~~~~d~~g~  100 (275)
T d1a9xa5          70 DLS--------PT---KELLIDESLIGWKEYEMEVVRDKNDN  100 (275)
T ss_dssp             HHC--------TT---SCEEEEECCTTSEEEEEEEEECTTCC
T ss_pred             hhC--------CC---CcEEEeeecCCchhheeeeEEecCCC
Confidence            432        11   47999999998899999999997653

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=1.2e-10  Score=100.65  Aligned_cols=92  Identities=24%  Similarity=0.290  Sum_probs=76.6

Q ss_pred             CC-ceeEEecChhHHHHHHHHHHHcCCCc---------------------cceeecCCCCCHHHHHHHHHHHhcCCCccE
Q 016159          291 DG-EIGCMVNGAGLAMATMDIIKLHGGTP---------------------ANFLDVGGNASEGQVVEAFKILTSDEKVKA  348 (394)
Q Consensus       291 ~G-~Ig~~~nGaGl~m~t~D~i~~~gg~~---------------------aNflD~gG~a~~~~~~~a~~~~l~~~~v~~  348 (394)
                      .| +|++++|+||.++++.|.+..+|.+.                     .|++|++|+++++.+.++++.+++||++++
T Consensus         2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~~d~~vd~   81 (163)
T d2csua3           2 RGNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDM   81 (163)
T ss_dssp             SSSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHSTTCSE
T ss_pred             CCCeEEEEECChHHHHHHHHHHHHcCCccCCCCHHHHHHHHHhCCCcccCCCcccccCCCCHHHHHHHHHHHHcCCCcCE
Confidence            46 79999999999999999999999863                     599999999999999999999999999999


Q ss_pred             EEEEcc----CCCCChHHHHHHHHHHHHHcCCcc--eEEee
Q 016159          349 ILVNIF----GGIMKCDVIASGIVNAAKQVSALD--CFGFH  383 (394)
Q Consensus       349 i~vni~----ggi~~~d~vA~gii~a~~~~~~~~--~~~~~  383 (394)
                      |++.+.    ++. ...+.++.++++.++.+.++  ++.+.
T Consensus        82 v~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~kpv~~~~~  121 (163)
T d2csua3          82 LIAICVVPTFAGM-TLTEHAEGIIRAVKEVNNEKPVLAMFM  121 (163)
T ss_dssp             EEEEEECCCSTTC-CSSHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred             EEEeeccCCcccc-cHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            887442    333 34567899999999887654  44443

>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Acetyl-CoA carboxylase, BC-M subdomain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=8.2e-10  Score=102.82  Aligned_cols=97  Identities=12%  Similarity=0.162  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHcCCCCCC--------------------------ceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCC
Q 016159           32 EYQGAELMAKYGINVPK--------------------------GLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGL   85 (394)
Q Consensus        32 E~~aK~lL~~~GIpvp~--------------------------~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK   85 (394)
                      +..||++++++|||+-+                          ...++|++|+.++++++|   ||+||||....|  |+
T Consensus         3 K~~ak~lA~~~GVP~vp~s~~~id~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~ig---fPvvVKP~~~~g--s~   77 (267)
T d1w96a3           3 KISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIG---FPVMIKASEGGG--GK   77 (267)
T ss_dssp             HHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHC---SSEEEEETTCCT--TT
T ss_pred             HHHHHHHHHHhCcCCCCCCCCccchHHHHHHhhhhccccccccccccCCHHHHHHHHHhcC---CCEEEEeecccC--Ce
Confidence            45689999999999843                          235789999999999999   999999954333  44


Q ss_pred             CcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159           86 GTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus        86 ~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                               ||.++ +++|+.++++......        ..   +.++||||+++..|..+.+..|...
T Consensus        78 ---------Gv~iv~~~~el~~a~~~a~~~s--------~~---~~vlVEe~I~G~~~~~~~~~~~~~~  126 (267)
T d1w96a3          78 ---------GIRQVEREEDFIALYHQAANEI--------PG---SPIFIMKLAGRARHLEVQLLADQYG  126 (267)
T ss_dssp             ---------TEEEECSHHHHHHHHHHHHHHS--------TT---CCEEEEECCCSCEEEEEEEEECTTS
T ss_pred             ---------eEEeecccchhhhhhhhhhhhc--------cc---chhhhhhhccchhhhhhhheeccCc
Confidence                     69999 9999999998876542        11   4799999999778888888888754

>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-ala-D-ala ligase, C-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=99.07  E-value=9.7e-10  Score=97.52  Aligned_cols=94  Identities=19%  Similarity=0.180  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHcCCCCCCceeeCC-------HHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHH
Q 016159           32 EYQGAELMAKYGINVPKGLAVAS-------VDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEE  103 (394)
Q Consensus        32 E~~aK~lL~~~GIpvp~~~~~~s-------~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee  103 (394)
                      ++.+|++|+++|||||++.++++       .+++..+...++   +|+|+||..  |+.|+         ||.++ |.++
T Consensus         1 K~~tk~~~~~~Giptp~~~~~~~~~~~~~~~~~~~~~~~~l~---~P~vvKP~~--g~~s~---------Gv~~v~~~~e   66 (210)
T d1iowa2           1 KLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG---LPVIVKPSR--EGSSV---------GMSKVVAENA   66 (210)
T ss_dssp             HHHHHHHHHHTTCCBCCEEEEEHHHHHHCCCTHHHHHHHTTC---SSEEEEETT--CCTTT---------TCEEESSGGG
T ss_pred             CHHHHHHHHHcCCCCCCeEEEechhhcccchHHHHHHHHhcC---CCEEEeecc--ccCce---------ecccccchhh
Confidence            35789999999999999999864       345666777888   999999964  44344         68888 9999


Q ss_pred             HHHHHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          104 VEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       104 ~~~a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                      +.++.+.++...             ..+++|++++ +.|+.+.+..|...
T Consensus        67 l~~~~~~~~~~~-------------~~vlve~~i~-g~e~~~~v~~~~~~  102 (210)
T d1iowa2          67 LQDALRLAFQHD-------------EEVLIEKWLS-GPEFTVAILGEEIL  102 (210)
T ss_dssp             HHHHHHHHTTTC-------------SEEEEEECCC-CCEEEEEEETTEEC
T ss_pred             hhHHHHHhhccC-------------cccccccccc-CceeEEEeecCccc
Confidence            999887764321             4799999998 78998888776554

>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-alanine:D-lactate ligase VanA, C-domain
species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]

Probab=99.04  E-value=3.3e-09  Score=95.16  Aligned_cols=93  Identities=19%  Similarity=0.178  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHcCCCCCCceeeCCH----HHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHH
Q 016159           32 EYQGAELMAKYGINVPKGLAVASV----DEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVED  106 (394)
Q Consensus        32 E~~aK~lL~~~GIpvp~~~~~~s~----eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~  106 (394)
                      ++.+|++|+++|||||++.+++..    +++.++++.+|   ||+|+||..  |+.|+         ||.++ |.+|+..
T Consensus         2 K~~~k~~l~~~gi~tp~~~~~~~~~~~~~~~~~~~~~~g---~P~VvKP~~--g~~s~---------GV~~~~~~~el~~   67 (228)
T d1ehia2           2 KALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG---NIVFVKAAN--QGSSV---------GISRVTNAEEYTE   67 (228)
T ss_dssp             HHHHHHHHHTTTCCCCCEEEECTTGGGGCCHHHHHHHHC---SCEEEEESS--CCTTT---------TEEEECSHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCEEEEchhhcChHHHHHHHHHhC---CCEEEEEec--cCCCc---------cceeccccchhhh
Confidence            578999999999999999998643    35667788898   999999964  44344         69899 9999999


Q ss_pred             HHHHHhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          107 LAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       107 a~~~~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                      +.++.....             ..+++||++.+++|+.+++..+.
T Consensus        68 ~~~~~~~~~-------------~~~liee~i~g~~e~~~~~~~~~   99 (228)
T d1ehia2          68 ALSDSFQYD-------------YKVLIEEAVNGARELEVGVIGND   99 (228)
T ss_dssp             HHHHHTTTC-------------SCEEEEECCCCSCEEEEEEEESS
T ss_pred             hhhhhcccc-------------cccccceEEeccceEEEEEeeCC
Confidence            988875432             47999999998889888877654

>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Methanocaldococcus jannaschii [TaxId: 2190]

Probab=98.88  E-value=4e-09  Score=96.01  Aligned_cols=92  Identities=16%  Similarity=0.168  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHH
Q 016159           32 EYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGK  110 (394)
Q Consensus        32 E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~  110 (394)
                      ....|++|+++|||+|+..  .       .++++|   ||+||||...  +.|+         ||.++ |.+++.+++++
T Consensus         2 K~~~k~~l~~~Gip~P~~~--~-------~~~~i~---~PvVVKP~~g--~gs~---------Gv~~v~~~~el~~a~~~   58 (238)
T d2r7ka2           2 RSLEGKLLREAGLRVPKKY--E-------SPEDID---GTVIVKFPGA--RGGR---------GYFIASSTEEFYKKAED   58 (238)
T ss_dssp             HHHHHHHHHHTTCCCCCEE--S-------SGGGCC---SCEEEECSCC--CC------------EEEESSHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCcccc--c-------CHhHCC---CCEEEEECCC--CCCC---------CeEEeCCHHHHHHHHHH
Confidence            3567999999999999743  2       346688   9999999543  3344         69999 99999999998


Q ss_pred             HhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          111 MLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       111 ~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                      +......      ....-..++|||+++ +.|+.+.+..+...
T Consensus        59 ~~~~~~~------~~~~~~~v~vEe~i~-G~e~~v~~~~~~~~   94 (238)
T d2r7ka2          59 LKKRGIL------TDEDIANAHIEEYVV-GTNFCIHYFYSPLK   94 (238)
T ss_dssp             HHHTTSC------CHHHHHHCEEEECCC-SEEEEEEEEEETTT
T ss_pred             HHHHHhh------ccCCCCcEEEEEeec-CceEEEEEeecccc
Confidence            8654321      111225799999998 88888888877544

>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-alanine:D-lactate ligase VanA, C-domain
species: Enterococcus faecium [TaxId: 1352]

Probab=98.75  E-value=3.4e-08  Score=87.30  Aligned_cols=91  Identities=18%  Similarity=0.132  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHH
Q 016159           32 EYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGK  110 (394)
Q Consensus        32 E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~  110 (394)
                      ++.+|.+++++|||||+++++++.+++  .+.+++   ||+|+||..  ||.|+         ||.++ |++++.++++.
T Consensus         2 K~~~~~~~~~~Gi~tP~~~~~~~~~~~--~~~~~~---fP~viKP~~--gg~s~---------Gv~~v~~~~el~~~~~~   65 (211)
T d1e4ea2           2 KSLTYIVAKNAGIATPAFWVINKDDRP--VAATFT---YPVFVKPAR--SGSSF---------GVKKVNSADELDYAIES   65 (211)
T ss_dssp             HHHHHHHHHHTTCBCCCEEEECTTCCC--CGGGSC---SCEEEEESS--CCTTT---------TCEEECSGGGHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCeEEECchhHH--HHHhcC---CCEEEeecc--ccCcc---------hhccccccccchhhccc
Confidence            578999999999999999999865433  346787   999999953  44455         68888 99999999888


Q ss_pred             HhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          111 MLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       111 ~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      +....             ..+++|++++ +.|+.+.+..+..
T Consensus        66 ~~~~~-------------~~~~~e~~~~-~~~~~~~~~~~~~   93 (211)
T d1e4ea2          66 ARQYD-------------SKILIEQAVS-GCEVGCAVLGNSA   93 (211)
T ss_dssp             HTTTC-------------SSEEEEECCC-SEEEEEEEEEETT
T ss_pred             ccccc-------------cccccccccc-cccceeeccCCCc
Confidence            75432             4689999987 7788777776644

>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.73  E-value=5.4e-08  Score=87.62  Aligned_cols=91  Identities=21%  Similarity=0.222  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHH
Q 016159           32 EYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGK  110 (394)
Q Consensus        32 E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~  110 (394)
                      ++-.|++|+++|||+|+..  .       .+++++   +|+||||....|  |+         ||.++ |.+++.+..++
T Consensus         2 K~~~k~~l~~~Gip~P~~~--~-------~~~~i~---~P~IVKP~~g~g--s~---------Gv~~v~~~~e~~~~~~~   58 (235)
T d2r85a2           2 RNLERKWLKKAGIRVPEVY--E-------DPDDIE---KPVIVKPHGAKG--GK---------GYFLAKDPEDFWRKAEK   58 (235)
T ss_dssp             HHHHHHHHHHTTCCCCCBC--S-------CGGGCC---SCEEEEECC------T---------TCEEESSHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCchhh--h-------CHHHcC---CCEEEEECCCCC--CC---------CeEEEechHHHHHHHHH
Confidence            4567999999999999732  2       334687   999999975444  33         58888 99999999888


Q ss_pred             HhcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccCC
Q 016159          111 MLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTA  154 (394)
Q Consensus       111 ~l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~~  154 (394)
                      ......        ......+++|||++ +.|+.+....+....
T Consensus        59 ~~~~~~--------~~~~~~~iiee~i~-G~~~~~~~~~~~~~~   93 (235)
T d2r85a2          59 FLGIKR--------KEDLKNIQIQEYVL-GVPVYPHYFYSKVRE   93 (235)
T ss_dssp             HHCCCS--------GGGCCSEEEEECCC-CEEEEEEEEEETTTT
T ss_pred             HHhhhh--------hCCCcchhHHhhcC-CeEEEEEEeeccccc
Confidence            764421        12236799999998 788888888776543

>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=7.4e-08  Score=83.71  Aligned_cols=93  Identities=13%  Similarity=0.081  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEECCHHHHHHHHHHH
Q 016159           32 EYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKM  111 (394)
Q Consensus        32 E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~s~ee~~~a~~~~  111 (394)
                      ++-.|++|+++|||||++..++|.+|+.++++++|   +|+|+||...  +-|.        ||+++.+.++...++.. 
T Consensus         2 K~~~K~~l~~~GIptp~~~~v~s~~d~~~~~~~ig---~P~vvKp~~~--~~~~--------~~~~v~~~~~~~~~~~~-   67 (198)
T d3etja3           2 RLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLG---ELAIVKRRTG--GYDG--------RGQWRLRANETEQLPAE-   67 (198)
T ss_dssp             HHHHHHHHHHTTCCBCCEEEECCGGGHHHHHHHHC---SCEEEEESSS--CBTT--------BSEEEECGGGGGGSCGG-
T ss_pred             HHHHHHHHHHCCcCCCCceEECCHHHHHHHHHHcC---CCeeeeeccc--cccc--------ceeeecchhhHHHHHhc-
Confidence            45679999999999999999999999999999999   9999999532  2122        46666533332221111 


Q ss_pred             hcccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEeccC
Q 016159          112 LGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKT  153 (394)
Q Consensus       112 l~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~~  153 (394)
                                     .-..+++|+++..+.|+.+.+..+...
T Consensus        68 ---------------~~~~~i~ee~i~~~~~~~~~~~~~~~~   94 (198)
T d3etja3          68 ---------------CYGECIVEQGINFSGEVSLVGARGFDG   94 (198)
T ss_dssp             ---------------GTTTEEEEECCCCSEEEEEEEEECTTS
T ss_pred             ---------------cCceEEEeeeccccccccceeeecccc
Confidence                           114689999998888887877776543

>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide transformylase PurT, domain 2
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=8e-08  Score=84.01  Aligned_cols=95  Identities=13%  Similarity=0.057  Sum_probs=69.4

Q ss_pred             HHHHH-HHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHh
Q 016159           35 GAELM-AKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKML  112 (394)
Q Consensus        35 aK~lL-~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l  112 (394)
                      .++|. ++.|||+|++..+.|.+|+.++++++|   +|+||||....|  |+         ||.++ |.+++.++++...
T Consensus         5 ~rrla~~~~Gip~p~~~~v~s~~dl~~~~~~ig---~PvVvKP~~g~g--s~---------gv~~v~~~~el~~a~~~~~   70 (206)
T d1kjqa3           5 IRRLAAEELQLPTSTYRFADSESLFREAVADIG---YPCIVKPVMSSS--GK---------GQTFIRSAEQLAQAWKYAQ   70 (206)
T ss_dssp             HHHHHHTTSCCCBCCEEEESSHHHHHHHHHHHC---SSEEEEESCC-----C---------CCEEECSGGGHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCeEECCHHHHHHHHHHhC---CCEEEeeccCCc--cC---------CceEEcCHHHHHHHHHHHH
Confidence            35555 468999999999999999999999999   999999965333  33         57777 9999988887764


Q ss_pred             cccccccccCCCCcccceEEEEeeeCCCeeEEEEEEEecc
Q 016159          113 GQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRK  152 (394)
Q Consensus       113 ~~~l~~~q~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr~  152 (394)
                      ....       .+  ...++++++.....|..+....+..
T Consensus        71 ~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~~  101 (206)
T d1kjqa3          71 QGGR-------AG--AGRVIVEGVVKFDFEITLLTVSAVD  101 (206)
T ss_dssp             HHSG-------GG--CCCEEEEECCCCSEEEEEEEEEETT
T ss_pred             hhcc-------cC--cceeeeeeccccceeeeeeeeecCC
Confidence            3221       01  1356777777767787777777653

>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Lysine biosynthesis enzyme LysX ATP-binding domain
domain: Lysine biosynthesis enzyme LysX ATP-binding domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.53  E-value=4.2e-08  Score=84.79  Aligned_cols=44  Identities=20%  Similarity=0.262  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEee
Q 016159           32 EYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQI   78 (394)
Q Consensus        32 E~~aK~lL~~~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~   78 (394)
                      ++..|++|+++|||+|++.++.|++++.++++++|   +|+|+||..
T Consensus         1 K~~~~~~l~~~GipvP~t~~~~~~~~~~~~~~~~g---~P~ivKP~~   44 (192)
T d1uc8a2           1 KWATSVALAKAGLPQPKTALATDREEALRLMEAFG---YPVVLKPVI   44 (192)
T ss_dssp             HHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHC---SSEEEECSB
T ss_pred             CHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHhC---CCEEEECCc
Confidence            36789999999999999999999999999999998   999999965

>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Synapsin C-terminal domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.12  E-value=6.3e-05  Score=65.99  Aligned_cols=80  Identities=10%  Similarity=-0.001  Sum_probs=54.9

Q ss_pred             cCCCCCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccc
Q 016159           42 YGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQ  120 (394)
Q Consensus        42 ~GIpvp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q  120 (394)
                      .++|++......+..   +.....+   +|+|+||..  |+.|+         ||.++ |+++++.+.+.+....     
T Consensus        29 ~~~p~~~~~~~~~~~---~~~~~~~---~PvVvKP~~--g~~g~---------Gv~~v~~~~~l~~~~~~~~~~~-----   86 (206)
T d1i7na2          29 EKFPLIEQTYYPNHR---EMLTLPT---FPVVVKIGH--AHSGM---------GKVKVENHYDFQDIASVVALTQ-----   86 (206)
T ss_dssp             TTSCBCCCEEESSGG---GGSSCCC---SSEEEEESS--CSTTT---------TEEEECSHHHHHHHHHHHHHHT-----
T ss_pred             Cccceeecccccchh---HHhhhcC---CceEEecCC--CCCCC---------CeEEEeecchhhhHHHHHhhcc-----
Confidence            456666554444433   2333344   899999954  55565         68888 9999998887765331     


Q ss_pred             cCCCCcccceEEEEeeeCCCeeEEEEEEEec
Q 016159          121 TGPQGKIVSKVYLCEKLSLVNEMYFAIMLDR  151 (394)
Q Consensus       121 ~~~~g~~v~~vlVee~v~~~~E~ylgi~~Dr  151 (394)
                              ..++||||++...|+.+.+.-+.
T Consensus        87 --------~~~~vqe~I~~~~dirv~vig~~  109 (206)
T d1i7na2          87 --------TYATAEPFIDAKYDIRVQKIGNN  109 (206)
T ss_dssp             --------CCEEEEECCCEEEEEEEEEETTE
T ss_pred             --------CeEEEEEeecccceEEEEEEecc
Confidence                    47999999986778888877443

>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.58  E-value=0.026  Score=47.21  Aligned_cols=81  Identities=19%  Similarity=0.193  Sum_probs=68.8

Q ss_pred             cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHH
Q 016159          290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVN  369 (394)
Q Consensus       290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~  369 (394)
                      .+|.||+++--|+++...++.+...|--..-++-+|+.++. .+..+++.+.+||++++|++.+=+ +.+....++...+
T Consensus        19 ~~G~valiSqSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~-~~~d~l~~l~~D~~t~~i~l~~E~-~~~~~~f~~~~r~   96 (161)
T d2csua2          19 KKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADV-DFAELMEYLADTEEDKAIALYIEG-VRNGKKFMEVAKR   96 (161)
T ss_dssp             EECSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCSS-CHHHHHHHHTTCSSCCEEEEEESC-CSCHHHHHHHHHH
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHhCCCCeeEEEecCCcccc-CHHHHHHHHhcCCCCcEEEEEecC-CcCHHHHHHHHHH
Confidence            36999999999999999999999999999999999999986 588999999999999999987764 4567776666555


Q ss_pred             HHH
Q 016159          370 AAK  372 (394)
Q Consensus       370 a~~  372 (394)
                      +.+
T Consensus        97 ~~~   99 (161)
T d2csua2          97 VTK   99 (161)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            543

>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: Prokaryotic glutathione synthetase, C-domain
species: Escherichia coli [TaxId: 562]

Probab=92.95  E-value=0.24  Score=41.65  Aligned_cols=83  Identities=11%  Similarity=0.100  Sum_probs=51.3

Q ss_pred             CCCceeeCCHHHHHHHHHHhCCCCCcEEEEEeeecCCCCCCcccCCCcccEEEC-CHHHHHHHHHHHhcccccccccCCC
Q 016159           46 VPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQ  124 (394)
Q Consensus        46 vp~~~~~~s~eea~~~a~~lg~~~~PvVvK~q~~~ggRgK~~~~~~~~GGV~l~-s~ee~~~a~~~~l~~~l~~~q~~~~  124 (394)
                      +|+..++.+++++.++.++.|    |+|+||..-.+|+           ||... +.+............          
T Consensus        13 ~P~Tlit~~~~~~~~f~~~~g----~vV~Kpl~gs~G~-----------gv~~~~~~~~~~~~~~~~~~~----------   67 (192)
T d1gsaa2          13 TPETLVTRNKAQLKAFWEKHS----DIILKPLDGMGGA-----------SIFRVKEGDPNLGVIAETLTE----------   67 (192)
T ss_dssp             SCCEEEESCHHHHHHHHHHHS----SEEEECSSCCTTT-----------TCEEECTTCTTHHHHHHHHTT----------
T ss_pred             CCCeEEECCHHHHHHHHHHcC----CeEEEEcCCCeEE-----------EEEEeecCchhhhHHHHHHHh----------
Confidence            699999999999999999984    8999996544443           34443 222222112221111          


Q ss_pred             CcccceEEEEeeeCC--CeeEEEEEEEeccCC
Q 016159          125 GKIVSKVYLCEKLSL--VNEMYFAIMLDRKTA  154 (394)
Q Consensus       125 g~~v~~vlVee~v~~--~~E~ylgi~~Dr~~~  154 (394)
                       .....++++++++.  +.++.+-+..+..++
T Consensus        68 -~~~~~~~~q~~~~~~~~~d~Rv~vv~~~~~~   98 (192)
T d1gsaa2          68 -HGTRYCMAQNYLPAIKDGDKRVLVVDGEPVP   98 (192)
T ss_dssp             -TTTSCEEEEECCGGGGGCEEEEEEETTEECS
T ss_pred             -cCccccccccccccccCceeEEEEECCcceE
Confidence             11146788888753  567777666666554

>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.57  E-value=0.29  Score=40.56  Aligned_cols=78  Identities=13%  Similarity=0.159  Sum_probs=62.8

Q ss_pred             CCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCCH-HHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHHH
Q 016159          291 DGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASE-GQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIVN  369 (394)
Q Consensus       291 ~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~~-~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii~  369 (394)
                      +|+||+++--|+++...++.+...|.-..-+.-+|+++.. ..+...++.+..||++++|.+.+-+ +.+....++...+
T Consensus        23 ~G~va~iSQSG~~~~~~~~~~~~~g~g~s~~~~~G~~~~~~~~~~d~l~~~~~D~~t~vI~l~~E~-~~~~~~f~~~~~~  101 (167)
T d1oi7a2          23 RGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEI-GGSDEEEAAAWVK  101 (167)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECS-SSSHHHHHHHHHH
T ss_pred             CCcEEEEEeccHHHHHHHHHHHHcCCCceeEEEecceeecCchHHHHHHHHhhccccceeeEeeec-cchHHHHHHHHHH
Confidence            5999999999999999999999998888888888888653 4466789999999999999987764 4555555544433

>d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.41  E-value=1.5  Score=36.25  Aligned_cols=88  Identities=14%  Similarity=0.176  Sum_probs=66.5

Q ss_pred             cCCceeEEecChhHHHHHHHHHHHcCCCccceeecCCCCC-HHHHHHHHHHHhcCCCccEEEEEccCCCCChHHHHHHHH
Q 016159          290 LDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNAS-EGQVVEAFKILTSDEKVKAILVNIFGGIMKCDVIASGIV  368 (394)
Q Consensus       290 l~G~Ig~~~nGaGl~m~t~D~i~~~gg~~aNflD~gG~a~-~~~~~~a~~~~l~~~~v~~i~vni~ggi~~~d~vA~gii  368 (394)
                      .+|+||+++--|+++...++.....|....-+.-+|++.. ...+...++.+.+||++++|.+.+-+. .+....++...
T Consensus        22 ~~G~iaivSQSG~l~~~l~~~~~~~g~g~~~~~~~g~~~~~~~~~~d~l~~~~~d~~t~~i~~~~E~~-~~~~~~~~~~~  100 (176)
T d1euca2          22 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIG-GNAEENAAEFL  100 (176)
T ss_dssp             CEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSCSSCSCCHHHHHHHHHHCTTCCEEEEEEESS-SSHHHHHHHHH
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHHhcCCceEEEEecccchhhhhHHHHHHHHHHhhccCcccceEEEee-ccchhhhHHHH
Confidence            4699999999999999999999999877777777777643 245667899999999999999866544 45555566666


Q ss_pred             HHHHHcCCcc
Q 016159          369 NAAKQVSALD  378 (394)
Q Consensus       369 ~a~~~~~~~~  378 (394)
                      ++.+....++
T Consensus       101 ~a~~~~~~~k  110 (176)
T d1euca2         101 KQHNSGPKSK  110 (176)
T ss_dssp             HHHSSSSSCC
T ss_pred             HHHHhccCCC
Confidence            6665544333